Carg21265-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CGCGGCATTGTTTACGATTCCTGGTTGATTTCCGCCATGGGTGAACCTCGATCTCAGCCGGTTTGCGCTCAGGAAGCTCTCGATTTGCTTAATTGCGTTACGGAATCTCCCTTCGATCAACAGAAATGCTACCGTCTCCTTCATTCTTTGCGAGAATGCGTGATTAGCAAGGTAGTCATTCCCTCTCTTCAATTTTCCCTATGACTTCATTGTTTATTTCCATGTTCTTGTAATCAATTGGTGCTGTATTTGGAATTCTCGAATTAGGTCGTCCAGCTCTCGGAATAGGATTTGCCGAGTATTTGTTGAAATTTTGTTGCGTTGTTCTCATCGGAGTTCAAATTGTGATTCACCTATTATGTTTGGATTGAAATAGTTCTTTTAACTGTTCTGGAATGACATTTGATTTCATGCGAGTTTTCTTATTATGAATTTTCTTTGAATCGTTCCTTCGACGGAAAGTGAAGAAGTTCTCTCTGGCTGATGAAGAACAAACAAAACAAATGAAGAATGCTTGAAGGAATTTTGTAAGAGAAGGATATTGTTCATCTTAAAGTAAGTTCTGTTGTTGATTGTATTTGAAGTTTCCATTTCTAGGAGATATTTATACCTTTCCTTCCAATTACTGAGAATTGAATTATAACTTGTTTCATTTATAATTTTAAGTGTAGGGATCAAATAGACACAAACCTCAAAAACCTCAAATCTTAGAGAGATTTATCAAAAATAGGCATAAGCATTAAACAGCAAGCATTCAAATTAGAGGTTTGAAAGTTTGTAGTCCAAAAAGATAGTCTGCATTATGATTGCATTCTTCTACATGTAAAGCTCAGTTCTTGACATTAAACCAGAAAGC CGCGGCATTGTTTACGATTCCTGGTTGATTTCCGCCATGGGTGAACCTCGATCTCAGCCGGTTTGCGCTCAGGAAGCTCTCGATTTGCTTAATTGCGTTACGGAATCTCCCTTCGATCAACAGAAATGCTACCGTCTCCTTCATTCTTTGCGAGAATGCGTGATTAGCAAGAAGTTCTCTCTGGCTGATGAAGAACAAACAAAACAAATGAAGAATGCTTGAAGGAATTTTGTAAGAGAAGGATATTGTTCATCTTAAAGTAAGTTCTGTTGTTGATTGTATTTGAAGTTTCCATTTCTAGGAGATATTTATACCTTTCCTTCCAATTACTGAGAATTGAATTATAACTTGTTTCATTTATAATTTTAAGTGTAGGGATCAAATAGACACAAACCTCAAAAACCTCAAATCTTAGAGAGATTTATCAAAAATAGGCATAAGCATTAAACAGCAAGCATTCAAATTAGAGGTTTGAAAGTTTGTAGTCCAAAAAGATAGTCTGCATTATGATTGCATTCTTCTACATGTAAAGCTCAGTTCTTGACATTAAACCAGAAAGC CGCGGCATTGTTTACGATTCCTGGTTGATTTCCGCCATGGGTGAACCTCGATCTCAGCCGGTTTGCGCTCAGGAAGCTCTCGATTTGCTTAATTGCGTTACGGAATCTCCCTTCGATCAACAGAAATGCTACCGTCTCCTTCATTCTTTGCGAGAATGCGTGATTAGCAAGAAGTTCTCTCTGGCTGATGAAGAACAAACAAAACAAATGAAGAATGCTTGA RGIVYDSWLISAMGEPRSQPVCAQEALDLLNCVTESPFDQQKCYRLLHSLRECVISKKFSLADEEQTKQMKNA Homology
BLAST of Carg21265-RA vs. NCBI nr
Match: KAG7017003.1 (hypothetical protein SDJN02_22114, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 153.3 bits (386), Expect = 8.1e-34 Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0
BLAST of Carg21265-RA vs. NCBI nr
Match: KGN50036.1 (hypothetical protein Csa_000619 [Cucumis sativus]) HSP 1 Score: 102.1 bits (253), Expect = 2.1e-18 Identity = 52/66 (78.79%), Postives = 58/66 (87.88%), Query Frame = 0
BLAST of Carg21265-RA vs. NCBI nr
Match: KAA0042698.1 (Cox19-like CHCH family protein [Cucumis melo var. makuwa] >TYK06102.1 Cox19-like CHCH family protein [Cucumis melo var. makuwa]) HSP 1 Score: 101.3 bits (251), Expect = 3.7e-18 Identity = 49/59 (83.05%), Postives = 53/59 (89.83%), Query Frame = 0
BLAST of Carg21265-RA vs. NCBI nr
Match: KAG6606053.1 (hypothetical protein SDJN03_03370, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 97.4 bits (241), Expect = 5.3e-17 Identity = 46/60 (76.67%), Postives = 54/60 (90.00%), Query Frame = 0
BLAST of Carg21265-RA vs. NCBI nr
Match: KAF5734209.1 (hypothetical protein HS088_TW16G00654 [Tripterygium wilfordii]) HSP 1 Score: 86.7 bits (213), Expect = 9.3e-14 Identity = 41/56 (73.21%), Postives = 50/56 (89.29%), Query Frame = 0
BLAST of Carg21265-RA vs. ExPASy TrEMBL
Match: A0A0A0KQS7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G151520 PE=4 SV=1) HSP 1 Score: 102.1 bits (253), Expect = 1.0e-18 Identity = 52/66 (78.79%), Postives = 58/66 (87.88%), Query Frame = 0
BLAST of Carg21265-RA vs. ExPASy TrEMBL
Match: A0A5D3C4E2 (Cox19-like CHCH family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G002030 PE=4 SV=1) HSP 1 Score: 101.3 bits (251), Expect = 1.8e-18 Identity = 49/59 (83.05%), Postives = 53/59 (89.83%), Query Frame = 0
BLAST of Carg21265-RA vs. ExPASy TrEMBL
Match: A0A7J7CJI7 (Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW16G00654 PE=4 SV=1) HSP 1 Score: 86.7 bits (213), Expect = 4.5e-14 Identity = 41/56 (73.21%), Postives = 50/56 (89.29%), Query Frame = 0
BLAST of Carg21265-RA vs. ExPASy TrEMBL
Match: A0A5N6R867 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_012852 PE=4 SV=1) HSP 1 Score: 84.0 bits (206), Expect = 2.9e-13 Identity = 40/56 (71.43%), Postives = 46/56 (82.14%), Query Frame = 0
BLAST of Carg21265-RA vs. ExPASy TrEMBL
Match: A0A314V446 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_25850 PE=4 SV=1) HSP 1 Score: 83.6 bits (205), Expect = 3.8e-13 Identity = 40/57 (70.18%), Postives = 48/57 (84.21%), Query Frame = 0
BLAST of Carg21265-RA vs. TAIR 10
Match: AT4G23760.1 (Cox19-like CHCH family protein ) HSP 1 Score: 75.1 bits (183), Expect = 2.6e-14 Identity = 35/63 (55.56%), Postives = 45/63 (71.43%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
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