Carg08871 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg08871
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	50S ribosomal protein L35
Location	Carg_Chr02: 9236654 .. 9239342 (-)
RNA-Seq Expression	Carg08871
Synteny	Carg08871

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCTCTTTAACAATTCCCTTTGGTCATACGACGGCGACGACGATGCTCAGGTGGTGTTCGAAGCTTCGATCTGCGGCGGCGAAACCATCTCAAATTGTACATAGCGTTTCTTCCACCCGCAGGATCTTTCACTCTGCTCCATCACTTTACCAGCCTCTCCATTTCTCTCCGAATAATTTGAGTTCCAGGTCCCTTCTCAATGCATCTTTACAGACTCATTCTTCACTTGCAGCTTACCAGTGCATTCGATCTCCGCTCTCACCTCTCTATGTAAGTTTAGTTTAGTTTCGTTTTCTTTGGTTATTTTGTTTAGTTCGTTGAGATGCTTGGAGTTATATATTGGATTCTCGGGAAATGCTTGGGAGGTAGGGGAATCGCTTGATTTTGAGCTGATGAAAGGAATTGTTTGGGAAAAATTGACTCACTGGAGTCTCTATTCCCGTATTTCTTTGTTTGCACCATTTGATATTAAACGATGTTCGGTTACATAATTAAGGCTGTTCAAGTGCGACATGTTTCGTCAAGAGAGCGAAAGAAGAGGAGAAAGCCGATGACGCCAGTTACTTCCAAATTGAAGAAAACGAAGATAAAATGTTACTCGTGAGTTTTCAAAATTATGGTTTTTATTAATGAATTTTGGTTCTTTATCATTATTGTCTTGCAAGTTTGTGAGTAAATGACACACTAAGATTTTCGATCAGGTCTTACAAGTCTAGGTTTTGGGTGAGGAAGGATGGGAGCATTAAACGTAGAAAGGAAGGGAAAAGGCACAATGCTCATTTGAAGGTTTGTCATTCTGTTTTATCAAATATGCTCCTTGGTTTAGTATTGTTTTGGCGTAGATATGTAAGTATTTGGAGGGCAGAGATTAGCTATACCATGTAAATTGGCCATTCTCTGAAAATTTCGTTTCAAGTTAGCTCTTGAAACGCAAATTATTATTAAGACGCGTAAAACATATAAACAAGCATTATATATATCTGCTTAAACCCAGAGGCCAGAGGCAATGTAGTGATAGACATCCACTTCTTTTGTTTAGAATTGTAACCCTTAAGCAGAATGATTGAGCCTTTGATCTTAGCATTACTGATAGATTTGTGATTTCGACCCCCCCCCCGCGGCGGGAATGATGCAACGATTTCTGCTCTTCATTTTCATTTCACAACTCCATGTTCCCTTTTATGAGTTCTGCTCTTCATTTTCATTTCACAACTCCCATGTCTTTTATGAAGCTTAATACTCATGCTAGGGCATCTTTCTTGTTCAAAAAGATAAAGTAAATGCTTTTGTGAACTATTTGTTTGCATTTTAATCCTAAAGCTATCGTCGAGCATTGTATGTCCATCAATAAGGTCTTATCCTTTAAGTTATCATTATGATTGAGCATCTTTTGTCCATCAATAAGCCCTTATCCCTAAAACTTATTATAGCTATAATTATTCGAGACACAATATGGGAGAATGTGGCTAACTCAACCTTCCATCAAGTTGTCTTTAGCATCATTTTATGGGAAAGTTGGGCTCCTTTAAGGACTCCTTGAATCTTGGAGTCTAGAAGTCATGGGGATATTAGGATCAAGAAGCAAGAGAATTGAGGATTAGGTTTCTGGATGGGCTTGTAAATATGGCCTCTTTGAGTGACTTCTTAAAGATGAACGAAGCCTATCTAAAAGCGTAGTTTGCGCAGGTAATTAGGAAAGAGGCGATAAGTTGGAGGCAAAAGCTTAAGTTAGATGGGTGGGGGAAGGAGATTGCGATTCTGAAGACTTCAATAAAATCACCAGCGGAGGGAGTAAGAACACTATATGCCCTTTGGAGAATGACAATGGCGAGAGGCTTCGAGGGGAAAAAGAGATTGAGAAGAAGATAGCCCTTTTTTTTGCTTCTCTCTATGCTTCAGTAGTTCTTAACTATGTATGTGTGAGATCCCACGTCGCAAAACATTCTTTATAAGGATATGAAGACTTCTCTCTAGCAGTCGTATTTTAAAAACTTTGAGGTGAAGCCCAAAAAGGAAAACCAAAAGAACAATATCTGCTAGCAGTAGACTTGGGTCGCTATAGTATGTATGAGACTATTTTCTCATCTATACACTAGAGTTGCATACACTAGCTTTTTAGCTATGTACCTCCGACATGCATCGGATGGCTCTTCACTCCTTTATTCCCTTCCATTTTATTTTTTCTCGCTATTTTAATATACTTCATTGAGCCAATTCAAAATGCAAAACTCAAACTTCTCGTAATTAACCATGTTGTTTGTATTTTCAATGCAGTCCAAAAAAGCAAAGCGTAGACTGAGACAGCCAGGCACTGTCCCATTGGCTTATGCCAAGGTAATGAAGAAGCTCAACTTTTGTGGTTAAATTATTGGTACAAGTCTCCTGTCGTGCTAGCTTCAAGATCACCATCGAGATATCAGTCCTTGCTCATCTTTTGGATTTTATATTAAGTGCCTTAGAACAAACTAAGAAAACAATTATTTCTTCTTTATTTGAAGTTTTGATGATAGAGATGATTGTGATTAAAAACGAGGTGATCTTTCAATTGTCTCCTTGTACCCTGAGTTAACCCCTAACAGTGTCCAATAATATTTATCTTTCGCATGGGATACGGTCCTACATGTGGCTTGCAATTAGCGATGTCCACGACACGAGGACCTCATCTCTACCTTCCATTTAATTTTCTAT

mRNA sequence

TCTCTCTTTAACAATTCCCTTTGGTCATACGACGGCGACGACGATGCTCAGGTGGTGTTCGAAGCTTCGATCTGCGGCGGCGAAACCATCTCAAATTGTACATAGCGTTTCTTCCACCCGCAGGATCTTTCACTCTGCTCCATCACTTTACCAGCCTCTCCATTTCTCTCCGAATAATTTGAGTTCCAGGTCCCTTCTCAATGCATCTTTACAGACTCATTCTTCACTTGCAGCTTACCAGTGCATTCGATCTCCGCTCTCACCTCTCTATGCTGTTCAAGTGCGACATGTTTCGTCAAGAGAGCGAAAGAAGAGGAGAAAGCCGATGACGCCAGTTACTTCCAAATTGAAGAAAACGAAGATAAAATGTTACTCGTCTTACAAGTCTAGGTTTTGGGTGAGGAAGGATGGGAGCATTAAACGTAGAAAGGAAGGGAAAAGGCACAATGCTCATTTGAAGTCCAAAAAAGCAAAGCGTAGACTGAGACAGCCAGGCACTGTCCCATTGGCTTATGCCAAGGTAATGAAGAAGCTCAACTTTTGTGGTTAAATTATTGGTACAAGTCTCCTGTCGTGCTAGCTTCAAGATCACCATCGAGATATCAGTCCTTGCTCATCTTTTGGATTTTATATTAAGTGCCTTAGAACAAACTAAGAAAACAATTATTTCTTCTTTATTTGAAGTTTTGATGATAGAGATGATTGTGATTAAAAACGAGGTGATCTTTCAATTGTCTCCTTGTACCCTGAGTTAACCCCTAACAGTGTCCAATAATATTTATCTTTCGCATGGGATACGGTCCTACATGTGGCTTGCAATTAGCGATGTCCACGACACGAGGACCTCATCTCTACCTTCCATTTAATTTTCTAT

Coding sequence (CDS)

ATGCTCAGGTGGTGTTCGAAGCTTCGATCTGCGGCGGCGAAACCATCTCAAATTGTACATAGCGTTTCTTCCACCCGCAGGATCTTTCACTCTGCTCCATCACTTTACCAGCCTCTCCATTTCTCTCCGAATAATTTGAGTTCCAGGTCCCTTCTCAATGCATCTTTACAGACTCATTCTTCACTTGCAGCTTACCAGTGCATTCGATCTCCGCTCTCACCTCTCTATGCTGTTCAAGTGCGACATGTTTCGTCAAGAGAGCGAAAGAAGAGGAGAAAGCCGATGACGCCAGTTACTTCCAAATTGAAGAAAACGAAGATAAAATGTTACTCGTCTTACAAGTCTAGGTTTTGGGTGAGGAAGGATGGGAGCATTAAACGTAGAAAGGAAGGGAAAAGGCACAATGCTCATTTGAAGTCCAAAAAAGCAAAGCGTAGACTGAGACAGCCAGGCACTGTCCCATTGGCTTATGCCAAGGTAATGAAGAAGCTCAACTTTTGTGGTTAA

Protein sequence

MLRWCSKLRSAAAKPSQIVHSVSSTRRIFHSAPSLYQPLHFSPNNLSSRSLLNASLQTHSSLAAYQCIRSPLSPLYAVQVRHVSSRERKKRRKPMTPVTSKLKKTKIKCYSSYKSRFWVRKDGSIKRRKEGKRHNAHLKSKKAKRRLRQPGTVPLAYAKVMKKLNFCG

Homology

[Close]

BLAST of Carg08871 vs. NCBI nr
Match: KAG7036224.1 (hypothetical protein SDJN02_03026 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 323.2 bits (827), Expect = 1.4e-84
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MLRWCSKLRSAAAKPSQIVHSVSSTRRIFHSAPSLYQPLHFSPNNLSSRSLLNASLQTHS 60
           MLRWCSKLRSAAAKPSQIVHSVSSTRRIFHSAPSLYQPLHFSPNNLSSRSLLNASLQTHS
Sbjct: 1   MLRWCSKLRSAAAKPSQIVHSVSSTRRIFHSAPSLYQPLHFSPNNLSSRSLLNASLQTHS 60

Query: 61  SLAAYQCIRSPLSPLYAVQVRHVSSRERKKRRKPMTPVTSKLKKTKIKCYSSYKSRFWVR 120
           SLAAYQCIRSPLSPLYAVQVRHVSSRERKKRRKPMTPVTSKLKKTKIKCYSSYKSRFWVR
Sbjct: 61  SLAAYQCIRSPLSPLYAVQVRHVSSRERKKRRKPMTPVTSKLKKTKIKCYSSYKSRFWVR 120

Query: 121 KDGSIKRRKEGKRHNAHLKSKKAKRRLRQPGTVPLAYAKVMKKLNFCG 169
           KDGSIKRRKEGKRHNAHLKSKKAKRRLRQPGTVPLAYAKVMKKLNFCG
Sbjct: 121 KDGSIKRRKEGKRHNAHLKSKKAKRRLRQPGTVPLAYAKVMKKLNFCG 168

[Close]

BLAST of Carg08871 vs. NCBI nr
Match: XP_022931031.1 (uncharacterized protein LOC111437349 [Cucurbita moschata] >KAG6606284.1 hypothetical protein SDJN03_03601, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 320.1 bits (819), Expect = 1.2e-83
Identity = 167/168 (99.40%), Postives = 167/168 (99.40%), Query Frame = 0


Query: 1   MLRWCSKLRSAAAKPSQIVHSVSSTRRIFHSAPSLYQPLHFSPNNLSSRSLLNASLQTHS 60
           MLRWCSKLRSAAAKPSQIVHSVSSTRRIFHSAPSLYQPLHFSPNNLSSRSLLNASLQTHS
Sbjct: 1   MLRWCSKLRSAAAKPSQIVHSVSSTRRIFHSAPSLYQPLHFSPNNLSSRSLLNASLQTHS 60

Query: 61  SLAAYQCIRSPLSPLYAVQVRHVSSRERKKRRKPMTPVTSKLKKTKIKCYSSYKSRFWVR 120
           SLAAYQCIRS LSPLYAVQVRHVSSRERKKRRKPMTPVTSKLKKTKIKCYSSYKSRFWVR
Sbjct: 61  SLAAYQCIRSSLSPLYAVQVRHVSSRERKKRRKPMTPVTSKLKKTKIKCYSSYKSRFWVR 120

Query: 121 KDGSIKRRKEGKRHNAHLKSKKAKRRLRQPGTVPLAYAKVMKKLNFCG 169
           KDGSIKRRKEGKRHNAHLKSKKAKRRLRQPGTVPLAYAKVMKKLNFCG
Sbjct: 121 KDGSIKRRKEGKRHNAHLKSKKAKRRLRQPGTVPLAYAKVMKKLNFCG 168

[Close]

BLAST of Carg08871 vs. NCBI nr
Match: XP_023532529.1 (uncharacterized protein LOC111794661 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 317.8 bits (813), Expect = 5.7e-83
Identity = 166/168 (98.81%), Postives = 166/168 (98.81%), Query Frame = 0


Query: 1   MLRWCSKLRSAAAKPSQIVHSVSSTRRIFHSAPSLYQPLHFSPNNLSSRSLLNASLQTHS 60
           MLRWCSKLRSAAAKPSQIVHSVSSTRRIFHSAPSLYQPLHFSPNNLSSRSLLNASLQTHS
Sbjct: 1   MLRWCSKLRSAAAKPSQIVHSVSSTRRIFHSAPSLYQPLHFSPNNLSSRSLLNASLQTHS 60

Query: 61  SLAAYQCIRSPLSPLYAVQVRHVSSRERKKRRKPMTPVTSKLKKTKIKCYSSYKSRFWVR 120
           SLAAYQCIRS LSPLYAVQVRHVSSRERKKRRKPMTPVTSKLKKTKIKCYSSYKSRFWVR
Sbjct: 61  SLAAYQCIRSSLSPLYAVQVRHVSSRERKKRRKPMTPVTSKLKKTKIKCYSSYKSRFWVR 120

Query: 121 KDGSIKRRKEGKRHNAHLKSKKAKRRLRQPGTVPLAYAKVMKKLNFCG 169
           KDGSIKRRKEGKRHNAHLKSKKAKRRLRQP TVPLAYAKVMKKLNFCG
Sbjct: 121 KDGSIKRRKEGKRHNAHLKSKKAKRRLRQPATVPLAYAKVMKKLNFCG 168

[Close]

BLAST of Carg08871 vs. NCBI nr
Match: XP_022996248.1 (uncharacterized protein LOC111491530 [Cucurbita maxima])

HSP 1 Score: 312.0 bits (798), Expect = 3.1e-81
Identity = 164/168 (97.62%), Postives = 164/168 (97.62%), Query Frame = 0


Query: 1   MLRWCSKLRSAAAKPSQIVHSVSSTRRIFHSAPSLYQPLHFSPNNLSSRSLLNASLQTHS 60
           MLRWCSKLRSAAAKPSQIVHSVSSTRRIFHS PSLYQPLHFSPNNLSSRSLLNASLQTHS
Sbjct: 1   MLRWCSKLRSAAAKPSQIVHSVSSTRRIFHSVPSLYQPLHFSPNNLSSRSLLNASLQTHS 60

Query: 61  SLAAYQCIRSPLSPLYAVQVRHVSSRERKKRRKPMTPVTSKLKKTKIKCYSSYKSRFWVR 120
           SLAAYQCIRS LSPLYAVQVRHVSSRERKKRRKPMTPVTSKLKKTKIK YSSYKSRFWVR
Sbjct: 61  SLAAYQCIRSSLSPLYAVQVRHVSSRERKKRRKPMTPVTSKLKKTKIKFYSSYKSRFWVR 120

Query: 121 KDGSIKRRKEGKRHNAHLKSKKAKRRLRQPGTVPLAYAKVMKKLNFCG 169
           KDGSIKRRKEGKRHNAHLKSKKAKRRLRQP TVPLAYAKVMKKLNFCG
Sbjct: 121 KDGSIKRRKEGKRHNAHLKSKKAKRRLRQPATVPLAYAKVMKKLNFCG 168

[Close]

BLAST of Carg08871 vs. NCBI nr
Match: XP_022156090.1 (uncharacterized protein LOC111023059 [Momordica charantia])

HSP 1 Score: 290.0 bits (741), Expect = 1.3e-74
Identity = 150/168 (89.29%), Postives = 159/168 (94.64%), Query Frame = 0


Query: 1   MLRWCSKLRSAAAKPSQIVHSVSSTRRIFHSAPSLYQPLHFSPNNLSSRSLLNASLQTHS 60
           MLRWC+KLRSAAAKPSQ+VHSVSSTRRIFHS+PSLYQPLHF+PNNLSSRS+ NASLQTHS
Sbjct: 1   MLRWCAKLRSAAAKPSQLVHSVSSTRRIFHSSPSLYQPLHFAPNNLSSRSIFNASLQTHS 60

Query: 61  SLAAYQCIRSPLSPLYAVQVRHVSSRERKKRRKPMTPVTSKLKKTKIKCYSSYKSRFWVR 120
           SLAAYQCIRS   PL  VQVRHVSSRER+KRRKPMTPVTSKLKKTK+K YSSYKSRFW+ 
Sbjct: 61  SLAAYQCIRSSPLPLSVVQVRHVSSRERRKRRKPMTPVTSKLKKTKMKFYSSYKSRFWMM 120

Query: 121 KDGSIKRRKEGKRHNAHLKSKKAKRRLRQPGTVPLAYAKVMKKLNFCG 169
           KDGSIKRRKEGKRHNAHLKSKK+KRRLRQP TVPLAYAKVMKKLNFCG
Sbjct: 121 KDGSIKRRKEGKRHNAHLKSKKSKRRLRQPATVPLAYAKVMKKLNFCG 168

[Close]

BLAST of Carg08871 vs. ExPASy TrEMBL
Match: A0A6J1ESK5 (uncharacterized protein LOC111437349 OS=Cucurbita moschata OX=3662 GN=LOC111437349 PE=4 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 5.6e-84
Identity = 167/168 (99.40%), Postives = 167/168 (99.40%), Query Frame = 0


Query: 1   MLRWCSKLRSAAAKPSQIVHSVSSTRRIFHSAPSLYQPLHFSPNNLSSRSLLNASLQTHS 60
           MLRWCSKLRSAAAKPSQIVHSVSSTRRIFHSAPSLYQPLHFSPNNLSSRSLLNASLQTHS
Sbjct: 1   MLRWCSKLRSAAAKPSQIVHSVSSTRRIFHSAPSLYQPLHFSPNNLSSRSLLNASLQTHS 60

Query: 61  SLAAYQCIRSPLSPLYAVQVRHVSSRERKKRRKPMTPVTSKLKKTKIKCYSSYKSRFWVR 120
           SLAAYQCIRS LSPLYAVQVRHVSSRERKKRRKPMTPVTSKLKKTKIKCYSSYKSRFWVR
Sbjct: 61  SLAAYQCIRSSLSPLYAVQVRHVSSRERKKRRKPMTPVTSKLKKTKIKCYSSYKSRFWVR 120

Query: 121 KDGSIKRRKEGKRHNAHLKSKKAKRRLRQPGTVPLAYAKVMKKLNFCG 169
           KDGSIKRRKEGKRHNAHLKSKKAKRRLRQPGTVPLAYAKVMKKLNFCG
Sbjct: 121 KDGSIKRRKEGKRHNAHLKSKKAKRRLRQPGTVPLAYAKVMKKLNFCG 168

[Close]

BLAST of Carg08871 vs. ExPASy TrEMBL
Match: A0A6J1KAA4 (uncharacterized protein LOC111491530 OS=Cucurbita maxima OX=3661 GN=LOC111491530 PE=4 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 1.5e-81
Identity = 164/168 (97.62%), Postives = 164/168 (97.62%), Query Frame = 0


Query: 1   MLRWCSKLRSAAAKPSQIVHSVSSTRRIFHSAPSLYQPLHFSPNNLSSRSLLNASLQTHS 60
           MLRWCSKLRSAAAKPSQIVHSVSSTRRIFHS PSLYQPLHFSPNNLSSRSLLNASLQTHS
Sbjct: 1   MLRWCSKLRSAAAKPSQIVHSVSSTRRIFHSVPSLYQPLHFSPNNLSSRSLLNASLQTHS 60

Query: 61  SLAAYQCIRSPLSPLYAVQVRHVSSRERKKRRKPMTPVTSKLKKTKIKCYSSYKSRFWVR 120
           SLAAYQCIRS LSPLYAVQVRHVSSRERKKRRKPMTPVTSKLKKTKIK YSSYKSRFWVR
Sbjct: 61  SLAAYQCIRSSLSPLYAVQVRHVSSRERKKRRKPMTPVTSKLKKTKIKFYSSYKSRFWVR 120

Query: 121 KDGSIKRRKEGKRHNAHLKSKKAKRRLRQPGTVPLAYAKVMKKLNFCG 169
           KDGSIKRRKEGKRHNAHLKSKKAKRRLRQP TVPLAYAKVMKKLNFCG
Sbjct: 121 KDGSIKRRKEGKRHNAHLKSKKAKRRLRQPATVPLAYAKVMKKLNFCG 168

[Close]

BLAST of Carg08871 vs. ExPASy TrEMBL
Match: A0A6J1DPB8 (uncharacterized protein LOC111023059 OS=Momordica charantia OX=3673 GN=LOC111023059 PE=4 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 6.2e-75
Identity = 150/168 (89.29%), Postives = 159/168 (94.64%), Query Frame = 0


Query: 1   MLRWCSKLRSAAAKPSQIVHSVSSTRRIFHSAPSLYQPLHFSPNNLSSRSLLNASLQTHS 60
           MLRWC+KLRSAAAKPSQ+VHSVSSTRRIFHS+PSLYQPLHF+PNNLSSRS+ NASLQTHS
Sbjct: 1   MLRWCAKLRSAAAKPSQLVHSVSSTRRIFHSSPSLYQPLHFAPNNLSSRSIFNASLQTHS 60

Query: 61  SLAAYQCIRSPLSPLYAVQVRHVSSRERKKRRKPMTPVTSKLKKTKIKCYSSYKSRFWVR 120
           SLAAYQCIRS   PL  VQVRHVSSRER+KRRKPMTPVTSKLKKTK+K YSSYKSRFW+ 
Sbjct: 61  SLAAYQCIRSSPLPLSVVQVRHVSSRERRKRRKPMTPVTSKLKKTKMKFYSSYKSRFWMM 120

Query: 121 KDGSIKRRKEGKRHNAHLKSKKAKRRLRQPGTVPLAYAKVMKKLNFCG 169
           KDGSIKRRKEGKRHNAHLKSKK+KRRLRQP TVPLAYAKVMKKLNFCG
Sbjct: 121 KDGSIKRRKEGKRHNAHLKSKKSKRRLRQPATVPLAYAKVMKKLNFCG 168

[Close]

BLAST of Carg08871 vs. ExPASy TrEMBL
Match: A0A1S3CDR4 (uncharacterized protein LOC103499252 OS=Cucumis melo OX=3656 GN=LOC103499252 PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 1.8e-66
Identity = 138/167 (82.63%), Postives = 149/167 (89.22%), Query Frame = 0


Query: 1   MLRWCSKLRSAAAKPSQIVHSVSSTRRIFHSAPSLYQPLHFSPNNLSSRSLLNASLQTHS 60
           MLRWC+KLRSAAAKPSQIV SVSSTRRIFHSAPSLYQPLHFSPNNL+SRSL NA  QTHS
Sbjct: 1   MLRWCAKLRSAAAKPSQIVKSVSSTRRIFHSAPSLYQPLHFSPNNLNSRSLFNA--QTHS 60

Query: 61  SLAAYQCIRSPLSPLYAVQVRHVSSRERKKRRKPMTPVTSKLKKTKIKCYSSYKSRFWVR 120
            LAAYQCIRS L PL  VQVRHVSSR+R+ +RKP TP TSKLKKTK+K YSSYKSRFW+ 
Sbjct: 61  PLAAYQCIRSSLLPLSVVQVRHVSSRDRRNKRKPTTPATSKLKKTKLKAYSSYKSRFWLM 120

Query: 121 KDGSIKRRKEGKRHNAHLKSKKAKRRLRQPGTVPLAYAKVMKKLNFC 168
           KDGSIKRR EGKRHNAH KSK++KR+LR+P  VPLAYAKVMKKLNFC
Sbjct: 121 KDGSIKRRMEGKRHNAHSKSKRSKRKLRKPAIVPLAYAKVMKKLNFC 165

[Close]

BLAST of Carg08871 vs. ExPASy TrEMBL
Match: A0A0A0LBT5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G638010 PE=4 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 7.6e-65
Identity = 135/167 (80.84%), Postives = 148/167 (88.62%), Query Frame = 0


Query: 1   MLRWCSKLRSAAAKPSQIVHSVSSTRRIFHSAPSLYQPLHFSPNNLSSRSLLNASLQTHS 60
           MLR C+KLRSAAAKPSQI++SVSSTRRIFHSAPSLYQPLHFS NNL+SRSL NAS QTHS
Sbjct: 1   MLRCCAKLRSAAAKPSQILNSVSSTRRIFHSAPSLYQPLHFSSNNLNSRSLFNASQQTHS 60

Query: 61  SLAAYQCIRSPLSPLYAVQVRHVSSRERKKRRKPMTPVTSKLKKTKIKCYSSYKSRFWVR 120
            LAAYQCIRS   PL  VQVRHVSSR+R+ +RKP TP TSKLKKTK+K YSSYKSRFW+ 
Sbjct: 61  PLAAYQCIRSSPLPLSVVQVRHVSSRDRRNKRKPTTPATSKLKKTKLKAYSSYKSRFWLM 120

Query: 121 KDGSIKRRKEGKRHNAHLKSKKAKRRLRQPGTVPLAYAKVMKKLNFC 168
           KDGSIKRR EGKRHNAH KSK++KR+LR+P  VPLAYAKVMKKLNFC
Sbjct: 121 KDGSIKRRMEGKRHNAHSKSKRSKRKLRKPAIVPLAYAKVMKKLNFC 167

[Close]

BLAST of Carg08871 vs. TAIR 10
Match: AT5G45590.1 (Ribosomal protein L35 )

HSP 1 Score: 126.3 bits (316), Expect = 2.3e-29
Identity = 87/181 (48.07%), Postives = 116/181 (64.09%), Query Frame = 0


Query: 1   MLRWCSKLRSAAAKPSQIVHSVSSTRRIFHSAPSLYQPLHFSPN---NLSSRSLLNASLQ 60
           M R+C+KLRS          S+ S R +     S ++ +H SP+   +L++ +L  A+  
Sbjct: 1   MQRFCTKLRSI---------SLQSNRNLSFYGASPHRLIHHSPSPSRHLTTTTLGFANST 60

Query: 61  THSSLAAYQCIRSPLS-------PLYAVQVRHVSSRER----KKRRKPMTPVTSKLKKTK 120
             S + A     S +S       P + VQVR+++S+E+    KK+ +P TP+TSK+KK K
Sbjct: 61  KWSFVPAAGVFPSNVSSMGTTFVPHHFVQVRNITSKEKMAKWKKKWRPRTPITSKVKKVK 120

Query: 121 IKCYSSYKSRFWVRKDGSIKRRKEGKRHNAHLKSKKAKRRLRQPGTVPLAYAKVMKKLNF 168
           IK YSS+K RF    DG+I+R KEGKRHNAHLKSKK+KRRLRQPG VP AYAKVMKKLNF
Sbjct: 121 IKFYSSFKDRFKPLNDGTIRRWKEGKRHNAHLKSKKSKRRLRQPGLVPPAYAKVMKKLNF 172

The following BLAST results are available for this feature:

BLAST of Carg08871 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7036224.1	1.4e-84	100.00	hypothetical protein SDJN02_03026 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022931031.1	1.2e-83	99.40	uncharacterized protein LOC111437349 [Cucurbita moschata] >KAG6606284.1 hypothet...	[more]
XP_023532529.1	5.7e-83	98.81	uncharacterized protein LOC111794661 [Cucurbita pepo subsp. pepo]	[more]
XP_022996248.1	3.1e-81	97.62	uncharacterized protein LOC111491530 [Cucurbita maxima]	[more]
XP_022156090.1	1.3e-74	89.29	uncharacterized protein LOC111023059 [Momordica charantia]	[more]

BLAST of Carg08871 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg08871 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ESK5	5.6e-84	99.40	uncharacterized protein LOC111437349 OS=Cucurbita moschata OX=3662 GN=LOC1114373...	[more]
A0A6J1KAA4	1.5e-81	97.62	uncharacterized protein LOC111491530 OS=Cucurbita maxima OX=3661 GN=LOC111491530...	[more]
A0A6J1DPB8	6.2e-75	89.29	uncharacterized protein LOC111023059 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A1S3CDR4	1.8e-66	82.63	uncharacterized protein LOC103499252 OS=Cucumis melo OX=3656 GN=LOC103499252 PE=...	[more]
A0A0A0LBT5	7.6e-65	80.84	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G638010 PE=4 SV=1	[more]

BLAST of Carg08871 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G45590.1	2.3e-29	48.07	Ribosomal protein L35	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021137	Ribosomal protein L35	PFAM	PF01632	Ribosomal_L35p	coord: 106..164 e-value: 1.3E-11 score: 44.8
IPR037229	Ribosomal protein L35 superfamily	GENE3D	4.10.410.60		coord: 106..165 e-value: 3.3E-12 score: 48.8
IPR037229	Ribosomal protein L35 superfamily	SUPERFAMILY	143034	L35p-like	coord: 106..164
None	No IPR available	PANTHER	PTHR36400	RIBOSOMAL PROTEIN L35	coord: 1..167

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg08871-RA	Carg08871-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome