Homology
BLAST of Carg04983 vs. NCBI nr
Match:
KAG7025354.1 (putative RNA-binding protein ARP1 [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 555.1 bits (1429), Expect = 3.5e-154
Identity = 276/276 (100.00%), Postives = 276/276 (100.00%), Query Frame = 0
Query: 1 MSQPRPFHSNNSVGGQYNDTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEAVVITDKNT 60
MSQPRPFHSNNSVGGQYNDTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEAVVITDKNT
Sbjct: 1 MSQPRPFHSNNSVGGQYNDTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEAVVITDKNT 60
Query: 61 GRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPQHGGGGRFRGPSGIV 120
GRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPQHGGGGRFRGPSGIV
Sbjct: 61 GRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPQHGGGGRFRGPSGIV 120
Query: 121 TPPAYHVSSSSYVHQPTSQYPFPLSAYGYSGYSQDRIYPMNYYGVYGGQQFSPYYSANAI 180
TPPAYHVSSSSYVHQPTSQYPFPLSAYGYSGYSQDRIYPMNYYGVYGGQQFSPYYSANAI
Sbjct: 121 TPPAYHVSSSSYVHQPTSQYPFPLSAYGYSGYSQDRIYPMNYYGVYGGQQFSPYYSANAI 180
Query: 181 PGPAGMFQNLYPYYAQSSQGYEFGVQYPHLMQYPYLPQQHGSTGILSLPVSTATGTTSAG 240
PGPAGMFQNLYPYYAQSSQGYEFGVQYPHLMQYPYLPQQHGSTGILSLPVSTATGTTSAG
Sbjct: 181 PGPAGMFQNLYPYYAQSSQGYEFGVQYPHLMQYPYLPQQHGSTGILSLPVSTATGTTSAG 240
Query: 241 AAATTTTTMAVGGSGPLQTSSAVATEPNSSEVISTG 277
AAATTTTTMAVGGSGPLQTSSAVATEPNSSEVISTG
Sbjct: 241 AAATTTTTMAVGGSGPLQTSSAVATEPNSSEVISTG 276
BLAST of Carg04983 vs. NCBI nr
Match:
XP_022960509.1 (RNA-binding protein 24 isoform X1 [Cucurbita moschata])
HSP 1 Score: 548.9 bits (1413), Expect = 2.5e-152
Identity = 273/276 (98.91%), Postives = 274/276 (99.28%), Query Frame = 0
Query: 1 MSQPRPFHSNNSVGGQYNDTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEAVVITDKNT 60
MSQPRPFHSN SVGGQYNDTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEAVVITDKNT
Sbjct: 1 MSQPRPFHSNYSVGGQYNDTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEAVVITDKNT 60
Query: 61 GRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPQHGGGGRFRGPSGIV 120
GRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPQHGGGGRFRGPSGIV
Sbjct: 61 GRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPQHGGGGRFRGPSGIV 120
Query: 121 TPPAYHVSSSSYVHQPTSQYPFPLSAYGYSGYSQDRIYPMNYYGVYGGQQFSPYYSANAI 180
TPPAYHVSSSSYVHQPT+QYPFPLSAYGYSGYSQDRIYPMNYYGVYGGQQFSPYYSANAI
Sbjct: 121 TPPAYHVSSSSYVHQPTTQYPFPLSAYGYSGYSQDRIYPMNYYGVYGGQQFSPYYSANAI 180
Query: 181 PGPAGMFQNLYPYYAQSSQGYEFGVQYPHLMQYPYLPQQHGSTGILSLPVSTATGTTSAG 240
PGPAGMFQNLYPYYAQSS GYEFGVQYPHLMQYPYLPQQHGSTGILSLPVSTATGTTSAG
Sbjct: 181 PGPAGMFQNLYPYYAQSSHGYEFGVQYPHLMQYPYLPQQHGSTGILSLPVSTATGTTSAG 240
Query: 241 AAATTTTTMAVGGSGPLQTSSAVATEPNSSEVISTG 277
AAATTTTTMAVGGSGPLQTSSAVATEPNSSEVISTG
Sbjct: 241 AAATTTTTMAVGGSGPLQTSSAVATEPNSSEVISTG 276
BLAST of Carg04983 vs. NCBI nr
Match:
XP_023513417.1 (RNA-binding protein 38 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 543.1 bits (1398), Expect = 1.4e-150
Identity = 273/278 (98.20%), Postives = 273/278 (98.20%), Query Frame = 0
Query: 1 MSQPRPFHSNNSVGGQYNDTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEAVVITDKNT 60
MSQPRPFHSNNSVGGQYNDTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEAVVITDKNT
Sbjct: 1 MSQPRPFHSNNSVGGQYNDTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEAVVITDKNT 60
Query: 61 GRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPQHGGGGRFRGPSGIV 120
GRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPQHGGGGRFRGPSGIV
Sbjct: 61 GRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPQHGGGGRFRGPSGIV 120
Query: 121 TPPAYHVSSSSYVHQPTSQYPFPLSAYGYSGYSQDRIYPMNYYGVYGGQQFSPYYSANAI 180
TPPAYHVSSSSYVHQPTSQYPFPLSAYGYSGYSQDRIYPMNYYGVYGGQQFSPYYSANAI
Sbjct: 121 TPPAYHVSSSSYVHQPTSQYPFPLSAYGYSGYSQDRIYPMNYYGVYGGQQFSPYYSANAI 180
Query: 181 PGPAGMFQNLYPYYAQSSQGYEFGVQYPHLMQYPYLPQQHGSTGILSLPVSTATGTTSAG 240
PGPAGMFQNL PYYAQSSQGYEFGVQYPHLMQYPYLPQQHGSTGILSLPVSTA GTTSAG
Sbjct: 181 PGPAGMFQNLCPYYAQSSQGYEFGVQYPHLMQYPYLPQQHGSTGILSLPVSTAAGTTSAG 240
Query: 241 AAA--TTTTTMAVGGSGPLQTSSAVATEPNSSEVISTG 277
AA TTTTTMAVGGSGPLQTSSAVATEPNSSEVISTG
Sbjct: 241 AATTMTTTTTMAVGGSGPLQTSSAVATEPNSSEVISTG 278
BLAST of Carg04983 vs. NCBI nr
Match:
XP_022960510.1 (RNA-binding protein 24 isoform X2 [Cucurbita moschata])
HSP 1 Score: 543.1 bits (1398), Expect = 1.4e-150
Identity = 272/276 (98.55%), Postives = 273/276 (98.91%), Query Frame = 0
Query: 1 MSQPRPFHSNNSVGGQYNDTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEAVVITDKNT 60
MSQPRPFHSN SVGGQYNDTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEAVVITDKNT
Sbjct: 1 MSQPRPFHSNYSVGGQYNDTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEAVVITDKNT 60
Query: 61 GRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPQHGGGGRFRGPSGIV 120
GRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPQHGGGGRFRGPSGIV
Sbjct: 61 GRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPQHGGGGRFRGPSGIV 120
Query: 121 TPPAYHVSSSSYVHQPTSQYPFPLSAYGYSGYSQDRIYPMNYYGVYGGQQFSPYYSANAI 180
TPPAYHVSSSSYVHQPT+QYPFPLSAYGYSGYSQDRIYPMNYYGVYGGQQFSPYYSANAI
Sbjct: 121 TPPAYHVSSSSYVHQPTTQYPFPLSAYGYSGYSQDRIYPMNYYGVYGGQQFSPYYSANAI 180
Query: 181 PGPAGMFQNLYPYYAQSSQGYEFGVQYPHLMQYPYLPQQHGSTGILSLPVSTATGTTSAG 240
PGPAGMFQNLYPYYAQSS GYEFGVQYPHLMQYPYLPQQHGSTGILSLPVSTATGTTSAG
Sbjct: 181 PGPAGMFQNLYPYYAQSSHGYEFGVQYPHLMQYPYLPQQHGSTGILSLPVSTATGTTSAG 240
Query: 241 AAATTTTTMAVGGSGPLQTSSAVATEPNSSEVISTG 277
AATTTTTMAVGGSGPLQTSSAVATEPNSSEVISTG
Sbjct: 241 -AATTTTTMAVGGSGPLQTSSAVATEPNSSEVISTG 275
BLAST of Carg04983 vs. NCBI nr
Match:
XP_023004764.1 (RNA-binding protein 38 [Cucurbita maxima])
HSP 1 Score: 533.1 bits (1372), Expect = 1.4e-147
Identity = 267/276 (96.74%), Postives = 269/276 (97.46%), Query Frame = 0
Query: 1 MSQPRPFHSNNSVGGQYNDTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEAVVITDKNT 60
MSQ RPFHSNNSVGGQYNDTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEAVVITDKNT
Sbjct: 1 MSQQRPFHSNNSVGGQYNDTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEAVVITDKNT 60
Query: 61 GRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPQHGGGGRFRGPSGIV 120
GRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPQHGGGGR RGPSGIV
Sbjct: 61 GRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPQHGGGGRSRGPSGIV 120
Query: 121 TPPAYHVSSSSYVHQPTSQYPFPLSAYGYSGYSQDRIYPMNYYGVYGGQQFSPYYSANAI 180
PPAYHVSSSSYVHQPT+QYPFPLSAYGYSGYSQDRIYPMNYYGVYGGQQFSPYYSAN I
Sbjct: 121 NPPAYHVSSSSYVHQPTTQYPFPLSAYGYSGYSQDRIYPMNYYGVYGGQQFSPYYSANVI 180
Query: 181 PGPAGMFQNLYPYYAQSSQGYEFGVQYPHLMQYPYLPQQHGSTGILSLPVSTATGTTSAG 240
PGPAGMFQNLYPYYAQSSQGYEFGVQYPHLMQYPYLPQQH STGILSLPVSTATGTTSAG
Sbjct: 181 PGPAGMFQNLYPYYAQSSQGYEFGVQYPHLMQYPYLPQQHSSTGILSLPVSTATGTTSAG 240
Query: 241 AAATTTTTMAVGGSGPLQTSSAVATEPNSSEVISTG 277
A T+TTTMAVGGSGPLQTSSAVATEPNSSEVISTG
Sbjct: 241 -ATTSTTTMAVGGSGPLQTSSAVATEPNSSEVISTG 275
BLAST of Carg04983 vs. ExPASy Swiss-Prot
Match:
Q9H0Z9 (RNA-binding protein 38 OS=Homo sapiens OX=9606 GN=RBM38 PE=1 SV=2)
HSP 1 Score: 126.3 bits (316), Expect = 5.3e-28
Identity = 61/103 (59.22%), Postives = 79/103 (76.70%), Query Frame = 0
Query: 4 PRPFHSNNSVGGQYNDTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEAVVITDKNTGRS 63
PRP + ++ G DTTFTKIFVGGL + T ++R++FE FG+I EAVVITD+ TG+S
Sbjct: 15 PRPLAAPGAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKS 74
Query: 64 KGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPQ 107
+GYGFVT D AA RAC++P+P+IDGR+AN NLA LGA KP+
Sbjct: 75 RGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGA-KPR 116
BLAST of Carg04983 vs. ExPASy Swiss-Prot
Match:
Q62176 (RNA-binding protein 38 OS=Mus musculus OX=10090 GN=Rbm38 PE=1 SV=2)
HSP 1 Score: 125.9 bits (315), Expect = 6.9e-28
Identity = 61/103 (59.22%), Postives = 80/103 (77.67%), Query Frame = 0
Query: 4 PRPFHSNNSVGGQYNDTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEAVVITDKNTGRS 63
PRP + +++ G DTTFTKIFVGGL + T ++R++FE FG+I EAVVITD+ TG+S
Sbjct: 13 PRPSAAPSAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKS 72
Query: 64 KGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPQ 107
+GYGFVT D AA RAC++P+P+IDGR+AN NLA LGA KP+
Sbjct: 73 RGYGFVTMADRAAADRACKDPNPIIDGRKANVNLAYLGA-KPR 114
BLAST of Carg04983 vs. ExPASy Swiss-Prot
Match:
Q9M1S3 (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 SV=1)
HSP 1 Score: 125.6 bits (314), Expect = 9.0e-28
Identity = 90/227 (39.65%), Postives = 115/227 (50.66%), Query Frame = 0
Query: 9 SNNSVGGQYNDTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEAVVITDKNTGRSKGYGF 68
++N+V G + DT TK+FVGGLAW+T + M F ++G+ILEAV+I+DK T RSKGYGF
Sbjct: 3 TSNNVNGCFGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGF 62
Query: 69 VTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAH--------KPQHG--GGGRFRGPS- 128
VTFKD AA RAC++ +P+I+GRRANCNLASLG PQ G G R P
Sbjct: 63 VTFKDAKAATRACEDSTPIINGRRANCNLASLGGRLRKSPTMTSPQQGPKNGNRATPPHV 122
Query: 129 GIVTPPAYHVSSSSYVHQPTSQYPFPLSAYGY-SGYSQDRIYPMNYYGVYGGQQFSPYYS 188
G + Y ++ HQ + P YGY S Y + G GG + YY
Sbjct: 123 GNHSQWYYPSGFTNQQHQQQNHQAVPF--YGYPSAYVAPNMTFNQKVGYVGGTYMNGYY- 182
Query: 189 ANAIPGPAGMFQNLYPYYAQSSQGYEF----GVQYPHLMQYPYLPQQ 220
A P P Q Y ++ G P YPY Q
Sbjct: 183 AQMQPQPQSQPQPQYYHHHMYGGGRVMVGAASPMVPFYTVYPYHQSQ 226
BLAST of Carg04983 vs. ExPASy Swiss-Prot
Match:
Q76LC6 (RNA-binding protein 24 OS=Danio rerio OX=7955 GN=rbm24 PE=2 SV=1)
HSP 1 Score: 120.2 bits (300), Expect = 3.8e-26
Identity = 86/212 (40.57%), Postives = 111/212 (52.36%), Query Frame = 0
Query: 19 DTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPDAAI 78
DTT+TKIFVGGL + T ++R++FE FGEI EAVVITD+ TG+S+GYGFVT D AA
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAAD 66
Query: 79 RACQNPSPVIDGRRANCNLASLGAHKPQHGGGGRFRGPSGIVTPPAYHVSSSSYVHQPTS 138
RAC++P+P+IDGR+AN NLA LGA KP R P P H + + +
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGA-KP------RVMQPGFTFGVPQIHPAFIQRPYGIPT 126
Query: 139 QYPFPLSAYGYSGYSQDRIYP-------MNYYGVYGGQQFSPYYSANAIPGPAGMFQNLY 198
Y +P A+ I P + Y Y G ++ Y SA A Q Y
Sbjct: 127 HYVYP-QAFMQPSVVIPHIQPTATSATASSPYIDYTGAAYAQYASAATAAAAAAYEQ--Y 186
Query: 199 PYYAQ-SSQGYEFGVQYPHLMQYPYLPQQHGS 223
PY A ++ GY Y + MQ P GS
Sbjct: 187 PYAASPAATGYVAAAGYGYAMQQPLATAAPGS 208
BLAST of Carg04983 vs. ExPASy Swiss-Prot
Match:
Q5ZJX4 (RNA-binding protein 38 OS=Gallus gallus OX=9031 GN=RBM38 PE=2 SV=1)
HSP 1 Score: 115.2 bits (287), Expect = 1.2e-24
Identity = 89/231 (38.53%), Postives = 114/231 (49.35%), Query Frame = 0
Query: 19 DTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPDAAI 78
DTTFTKIFVGGL + T ++R++FE FG+I EAVVITD+ TG+S+GYGFVT D AA
Sbjct: 7 DTTFTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 79 RACQNPSPVIDGRRANCNLASLGAHKPQHGGGGRFRGPSGIVTPPAYHVSSSSYVHQPTS 138
RAC++P+P+IDGR+AN NLA LGA P I T V +H
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAK------------PRSIQTGFTIGVQQ---LHPAFI 126
Query: 139 QYPFPLSAYGYSGYSQDRIYPMNYYGVYGGQQFSPYYSANAIPGPAGMFQNLYPYYAQSS 198
Q PF L+ + Y Q I P + IP P + Y Y +S
Sbjct: 127 QRPFGLTPHYV--YPQAIIQP-----------------SVVIPTPVQSIASPYIDYTAAS 186
Query: 199 QGYEFGVQYPHLM--QYPYLPQQ------HGSTGILSLPVSTATGTTSAGA 242
Q Y QY QYPY +G TG + P++ +T A A
Sbjct: 187 QAYS---QYTTAAYDQYPYAASPAAGFVGYGYTGAVQPPITASTPAAPATA 200
BLAST of Carg04983 vs. ExPASy TrEMBL
Match:
A0A6J1HB82 (RNA-binding protein 24 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111461225 PE=4 SV=1)
HSP 1 Score: 548.9 bits (1413), Expect = 1.2e-152
Identity = 273/276 (98.91%), Postives = 274/276 (99.28%), Query Frame = 0
Query: 1 MSQPRPFHSNNSVGGQYNDTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEAVVITDKNT 60
MSQPRPFHSN SVGGQYNDTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEAVVITDKNT
Sbjct: 1 MSQPRPFHSNYSVGGQYNDTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEAVVITDKNT 60
Query: 61 GRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPQHGGGGRFRGPSGIV 120
GRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPQHGGGGRFRGPSGIV
Sbjct: 61 GRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPQHGGGGRFRGPSGIV 120
Query: 121 TPPAYHVSSSSYVHQPTSQYPFPLSAYGYSGYSQDRIYPMNYYGVYGGQQFSPYYSANAI 180
TPPAYHVSSSSYVHQPT+QYPFPLSAYGYSGYSQDRIYPMNYYGVYGGQQFSPYYSANAI
Sbjct: 121 TPPAYHVSSSSYVHQPTTQYPFPLSAYGYSGYSQDRIYPMNYYGVYGGQQFSPYYSANAI 180
Query: 181 PGPAGMFQNLYPYYAQSSQGYEFGVQYPHLMQYPYLPQQHGSTGILSLPVSTATGTTSAG 240
PGPAGMFQNLYPYYAQSS GYEFGVQYPHLMQYPYLPQQHGSTGILSLPVSTATGTTSAG
Sbjct: 181 PGPAGMFQNLYPYYAQSSHGYEFGVQYPHLMQYPYLPQQHGSTGILSLPVSTATGTTSAG 240
Query: 241 AAATTTTTMAVGGSGPLQTSSAVATEPNSSEVISTG 277
AAATTTTTMAVGGSGPLQTSSAVATEPNSSEVISTG
Sbjct: 241 AAATTTTTMAVGGSGPLQTSSAVATEPNSSEVISTG 276
BLAST of Carg04983 vs. ExPASy TrEMBL
Match:
A0A6J1H998 (RNA-binding protein 24 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111461225 PE=4 SV=1)
HSP 1 Score: 543.1 bits (1398), Expect = 6.7e-151
Identity = 272/276 (98.55%), Postives = 273/276 (98.91%), Query Frame = 0
Query: 1 MSQPRPFHSNNSVGGQYNDTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEAVVITDKNT 60
MSQPRPFHSN SVGGQYNDTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEAVVITDKNT
Sbjct: 1 MSQPRPFHSNYSVGGQYNDTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEAVVITDKNT 60
Query: 61 GRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPQHGGGGRFRGPSGIV 120
GRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPQHGGGGRFRGPSGIV
Sbjct: 61 GRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPQHGGGGRFRGPSGIV 120
Query: 121 TPPAYHVSSSSYVHQPTSQYPFPLSAYGYSGYSQDRIYPMNYYGVYGGQQFSPYYSANAI 180
TPPAYHVSSSSYVHQPT+QYPFPLSAYGYSGYSQDRIYPMNYYGVYGGQQFSPYYSANAI
Sbjct: 121 TPPAYHVSSSSYVHQPTTQYPFPLSAYGYSGYSQDRIYPMNYYGVYGGQQFSPYYSANAI 180
Query: 181 PGPAGMFQNLYPYYAQSSQGYEFGVQYPHLMQYPYLPQQHGSTGILSLPVSTATGTTSAG 240
PGPAGMFQNLYPYYAQSS GYEFGVQYPHLMQYPYLPQQHGSTGILSLPVSTATGTTSAG
Sbjct: 181 PGPAGMFQNLYPYYAQSSHGYEFGVQYPHLMQYPYLPQQHGSTGILSLPVSTATGTTSAG 240
Query: 241 AAATTTTTMAVGGSGPLQTSSAVATEPNSSEVISTG 277
AATTTTTMAVGGSGPLQTSSAVATEPNSSEVISTG
Sbjct: 241 -AATTTTTMAVGGSGPLQTSSAVATEPNSSEVISTG 275
BLAST of Carg04983 vs. ExPASy TrEMBL
Match:
A0A6J1KX91 (RNA-binding protein 38 OS=Cucurbita maxima OX=3661 GN=LOC111497969 PE=4 SV=1)
HSP 1 Score: 533.1 bits (1372), Expect = 6.9e-148
Identity = 267/276 (96.74%), Postives = 269/276 (97.46%), Query Frame = 0
Query: 1 MSQPRPFHSNNSVGGQYNDTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEAVVITDKNT 60
MSQ RPFHSNNSVGGQYNDTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEAVVITDKNT
Sbjct: 1 MSQQRPFHSNNSVGGQYNDTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEAVVITDKNT 60
Query: 61 GRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPQHGGGGRFRGPSGIV 120
GRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPQHGGGGR RGPSGIV
Sbjct: 61 GRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPQHGGGGRSRGPSGIV 120
Query: 121 TPPAYHVSSSSYVHQPTSQYPFPLSAYGYSGYSQDRIYPMNYYGVYGGQQFSPYYSANAI 180
PPAYHVSSSSYVHQPT+QYPFPLSAYGYSGYSQDRIYPMNYYGVYGGQQFSPYYSAN I
Sbjct: 121 NPPAYHVSSSSYVHQPTTQYPFPLSAYGYSGYSQDRIYPMNYYGVYGGQQFSPYYSANVI 180
Query: 181 PGPAGMFQNLYPYYAQSSQGYEFGVQYPHLMQYPYLPQQHGSTGILSLPVSTATGTTSAG 240
PGPAGMFQNLYPYYAQSSQGYEFGVQYPHLMQYPYLPQQH STGILSLPVSTATGTTSAG
Sbjct: 181 PGPAGMFQNLYPYYAQSSQGYEFGVQYPHLMQYPYLPQQHSSTGILSLPVSTATGTTSAG 240
Query: 241 AAATTTTTMAVGGSGPLQTSSAVATEPNSSEVISTG 277
A T+TTTMAVGGSGPLQTSSAVATEPNSSEVISTG
Sbjct: 241 -ATTSTTTMAVGGSGPLQTSSAVATEPNSSEVISTG 275
BLAST of Carg04983 vs. ExPASy TrEMBL
Match:
A0A1S3CBZ0 (RNA-binding protein 24-B OS=Cucumis melo OX=3656 GN=LOC103498947 PE=4 SV=1)
HSP 1 Score: 470.7 bits (1210), Expect = 4.2e-129
Identity = 242/289 (83.74%), Postives = 256/289 (88.58%), Query Frame = 0
Query: 1 MSQPRPFH----SNN----SVGGQYNDTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEA 60
MSQ R FH SNN S+GGQYNDTTFTKIFVGGLAWETQRHTMRR+FEQFGEILEA
Sbjct: 1 MSQQRQFHNINSSNNSSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA 60
Query: 61 VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHK-----PQH 120
VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHK PQH
Sbjct: 61 VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPTPQH 120
Query: 121 GGGGRFRGPSGIVTPPAYHVSSSSYVHQPTSQYPFPLSAYGYSGYSQDRIYPMNYYGVYG 180
G GGRFRG SGIVTPPAYHVSSSSY+HQPTSQY FPLS YG++GYSQDRIYP+NYYGVYG
Sbjct: 121 GVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYG 180
Query: 181 GQQFSPYYSANAIPGPAGMFQNLYPYYAQSSQGYEFGVQYPHLMQYPYLPQQHGSTGILS 240
GQQFSPYYSAN + GPAGMFQNLYPYYAQSSQGY FG+QYPHLMQYPYLPQQHGSTGILS
Sbjct: 181 GQQFSPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFGIQYPHLMQYPYLPQQHGSTGILS 240
Query: 241 LPVSTATGTTSAGAAATTTTTMAVGGSGPLQTSSAVATEPNSSEVISTG 277
LP S A GTT++G AT+TT + GSGP Q SSAVA+EPNSSE+ISTG
Sbjct: 241 LPGSNALGTTTSGTTATSTTAV---GSGPSQASSAVASEPNSSELISTG 286
BLAST of Carg04983 vs. ExPASy TrEMBL
Match:
A0A0A0K998 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G087740 PE=4 SV=1)
HSP 1 Score: 464.9 bits (1195), Expect = 2.3e-127
Identity = 240/289 (83.04%), Postives = 253/289 (87.54%), Query Frame = 0
Query: 1 MSQPRPFH----SNN----SVGGQYNDTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEA 60
MSQ R FH SNN S+GGQYNDTTFTKIFVGGLAWETQRHTMRR+FEQFGEILEA
Sbjct: 1 MSQQRQFHNINSSNNSSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA 60
Query: 61 VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHK-----PQH 120
VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHK PQH
Sbjct: 61 VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPTPQH 120
Query: 121 GGGGRFRGPSGIVTPPAYHVSSSSYVHQPTSQYPFPLSAYGYSGYSQDRIYPMNYYGVYG 180
G GGRFRG SGIVTPPAYHVSSSSY+HQPTSQY FPLS YG++GYSQDRIYP+NYYGVYG
Sbjct: 121 GVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYG 180
Query: 181 GQQFSPYYSANAIPGPAGMFQNLYPYYAQSSQGYEFGVQYPHLMQYPYLPQQHGSTGILS 240
GQQFSPYYSAN + GPAGMFQNLYPYYAQSSQGY FG+QYPHLMQYPYLPQQH STGILS
Sbjct: 181 GQQFSPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFGMQYPHLMQYPYLPQQHSSTGILS 240
Query: 241 LPVSTATGTTSAGAAATTTTTMAVGGSGPLQTSSAVATEPNSSEVISTG 277
LP S A GTT++G ATT T + GSGP Q S AVA+EPNSSE+ISTG
Sbjct: 241 LPGSNALGTTTSGTTATTITAV---GSGPSQASPAVASEPNSSELISTG 286
BLAST of Carg04983 vs. TAIR 10
Match:
AT2G46780.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )
HSP 1 Score: 246.1 bits (627), Expect = 3.2e-65
Identity = 170/337 (50.45%), Postives = 200/337 (59.35%), Query Frame = 0
Query: 1 MSQPRPFHSNNSVGGQYN--DTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEAVVITDK 60
M+Q R F GG N DT TKIFVGGLAWETQR TMRR+FEQFGEI+EAVVITDK
Sbjct: 1 MAQQRQFQME---GGNNNTTDTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDK 60
Query: 61 NTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPQ-----HGGGGRF 120
NTGRSKGYGFVTFK+ +AA+RACQN +PVIDGRRANCNLA LGA KP+ G GRF
Sbjct: 61 NTGRSKGYGFVTFKEAEAAMRACQNMNPVIDGRRANCNLACLGAQKPRPPTSPRHGTGRF 120
Query: 121 RGPS---GIVTP-PAYHVSSSS--YVHQP----TSQYPFPLSAYGYSGYSQDRIYPMNYY 180
R P G+V P P + SSSS +VHQ T+Q+PFP S YG+SGYSQ+ +YPMNYY
Sbjct: 121 RSPGSGVGLVAPSPQFRGSSSSSAFVHQQQQQHTAQFPFPYSTYGFSGYSQEGMYPMNYY 180
Query: 181 G--VYGGQQFSPYYSANAIPGPAGMFQNLYPYY-----------------AQSSQGYEFG 240
+YGGQQFSP Y + G GMF YPYY AQ QG+ F
Sbjct: 181 NHHLYGGQQFSP-YMGHPSAGSTGMFHGFYPYYPQYNAAQSSNQAQAQVQAQHHQGFSF- 240
Query: 241 VQY-----PHLMQYPYLPQQ-HGST-----------GILSLPVSTA---------TGTTS 276
QY P L+QYPYLP Q H S+ ILSLP S A + +TS
Sbjct: 241 -QYTAPPAPPLLQYPYLPHQPHFSSQQQFSSQQPPPPILSLPTSLALSLPSSSSPSSSTS 300
BLAST of Carg04983 vs. TAIR 10
Match:
AT1G20880.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )
HSP 1 Score: 174.9 bits (442), Expect = 9.2e-44
Identity = 104/216 (48.15%), Postives = 127/216 (58.80%), Query Frame = 0
Query: 7 FHSNNSVGGQYNDTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEAVVITDKNTGRSKGY 66
FH NS + DTTFTK+FVGGLAWETQ T+RR F+Q+G+ILEAVVITDKNTGRSKGY
Sbjct: 11 FHYLNS---PFGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGY 70
Query: 67 GFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKP--QHG----GGGRFRGPS--- 126
GFVTF+DP+AA RAC +P+P+IDGRRANCNLASLG +P Q+ GR R PS
Sbjct: 71 GFVTFRDPEAARRACVDPTPIIDGRRANCNLASLGRSRPPMQYAVIPHAPGRVRPPSPYV 130
Query: 127 -GIVTPPAYHVSSSSYVHQPTSQY-PFPLSAYGYSGYSQDRIYPMN--YYGVYGGQQFSP 186
+ +P H S Y PT Y + YG + Y D +Y + +YG Y GQQ+
Sbjct: 131 GSVQSPRGLHFGSHPYHQPPTYNYQQGVVYPYGVTPYGPDYMYSQSQGFYGPYMGQQYLQ 190
Query: 187 YYSANAIPGPAGMFQNLYPYYAQSSQGYEFGVQYPH 210
Y G + + GY G Y H
Sbjct: 191 VYGVPGAVNSPGYQYGQLSHTIPGAHGYTAGQGYSH 223
BLAST of Carg04983 vs. TAIR 10
Match:
AT1G20880.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )
HSP 1 Score: 174.9 bits (442), Expect = 9.2e-44
Identity = 104/216 (48.15%), Postives = 127/216 (58.80%), Query Frame = 0
Query: 7 FHSNNSVGGQYNDTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEAVVITDKNTGRSKGY 66
FH NS + DTTFTK+FVGGLAWETQ T+RR F+Q+G+ILEAVVITDKNTGRSKGY
Sbjct: 11 FHYLNS---PFGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGY 70
Query: 67 GFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKP--QHG----GGGRFRGPS--- 126
GFVTF+DP+AA RAC +P+P+IDGRRANCNLASLG +P Q+ GR R PS
Sbjct: 71 GFVTFRDPEAARRACVDPTPIIDGRRANCNLASLGRSRPPMQYAVIPHAPGRVRPPSPYV 130
Query: 127 -GIVTPPAYHVSSSSYVHQPTSQY-PFPLSAYGYSGYSQDRIYPMN--YYGVYGGQQFSP 186
+ +P H S Y PT Y + YG + Y D +Y + +YG Y GQQ+
Sbjct: 131 GSVQSPRGLHFGSHPYHQPPTYNYQQGVVYPYGVTPYGPDYMYSQSQGFYGPYMGQQYLQ 190
Query: 187 YYSANAIPGPAGMFQNLYPYYAQSSQGYEFGVQYPH 210
Y G + + GY G Y H
Sbjct: 191 VYGVPGAVNSPGYQYGQLSHTIPGAHGYTAGQGYSH 223
BLAST of Carg04983 vs. TAIR 10
Match:
AT1G22910.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )
HSP 1 Score: 164.5 bits (415), Expect = 1.2e-40
Identity = 105/230 (45.65%), Postives = 131/230 (56.96%), Query Frame = 0
Query: 19 DTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPDAAI 78
DTT+TK+FVGGLAWET + TM++ FEQFGEILEAVVITDK +GRSKGYGFVTF++ +AA
Sbjct: 9 DTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAAR 68
Query: 79 RACQNPSPVIDGRRANCNLASLGAHK-----PQHGGGGRFRGPSGIVTPPAYHVSSSSYV 138
AC + +PVIDGRRANCNLASLG + P HGGGGR +++
Sbjct: 69 SACVDATPVIDGRRANCNLASLGLQRSKPSTPNHGGGGRINNMRVMMSTMQTGFGPPPPP 128
Query: 139 HQPT-SQYP-FPLSAYGYSGYSQD-RIYPMNYYGVYG---GQQFSPYYSANA----IPGP 198
PT + YP PL+ +GYS YS D +P N YG+YG G Q+ Y + N+ +
Sbjct: 129 QPPTFTHYPHLPLNLFGYSPYSPDYSSFPTNLYGMYGCTSGGQYGVYGNRNSGGGGLTAA 188
Query: 199 AGMFQNLYP--------YYAQSSQGYEFGVQY-PHLMQYPYLPQQHGSTG 225
A YP ++Q Y Y PH P Q G TG
Sbjct: 189 AASATPFYPCGGGHGGVQFSQPQPFYHHLSSYNPHHYSPPTFSMQQGVTG 238
BLAST of Carg04983 vs. TAIR 10
Match:
AT1G22910.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )
HSP 1 Score: 164.1 bits (414), Expect = 1.6e-40
Identity = 106/233 (45.49%), Postives = 132/233 (56.65%), Query Frame = 0
Query: 19 DTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPDAAI 78
DTT+TK+FVGGLAWET + TM++ FEQFGEILEAVVITDK +GRSKGYGFVTF++ +AA
Sbjct: 9 DTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAAR 68
Query: 79 RACQNPSPVIDGRRANCNLASLGAHK-----PQHGGGGRFRGPSGIVTPPAYHVSSSSYV 138
AC + +PVIDGRRANCNLASLG + P HGGGGR +++
Sbjct: 69 SACVDATPVIDGRRANCNLASLGLQRSKPSTPNHGGGGRINNMRVMMSTMQTGFGPPPPP 128
Query: 139 HQPT-SQYP-FPLSAYGYSGYSQD-RIYPMNYYGVYG---GQQFSPYYSANA----IPGP 198
PT + YP PL+ +GYS YS D +P N YG+YG G Q+ Y + N+ +
Sbjct: 129 QPPTFTHYPHLPLNLFGYSPYSPDYSSFPTNLYGMYGCTSGGQYGVYGNRNSGGGGLTAA 188
Query: 199 AGMFQNLYP--------YYAQSSQGYEFGVQY-PHLMQYPYLPQQHGSTGILS 228
A YP ++Q Y Y PH P Q GS LS
Sbjct: 189 AASATPFYPCGGGHGGVQFSQPQPFYHHLSSYNPHHYSPPTFSMQQGSRNRLS 241
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Q9H0Z9 | 5.3e-28 | 59.22 | RNA-binding protein 38 OS=Homo sapiens OX=9606 GN=RBM38 PE=1 SV=2 | [more] |
Q62176 | 6.9e-28 | 59.22 | RNA-binding protein 38 OS=Mus musculus OX=10090 GN=Rbm38 PE=1 SV=2 | [more] |
Q9M1S3 | 9.0e-28 | 39.65 | Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 S... | [more] |
Q76LC6 | 3.8e-26 | 40.57 | RNA-binding protein 24 OS=Danio rerio OX=7955 GN=rbm24 PE=2 SV=1 | [more] |
Q5ZJX4 | 1.2e-24 | 38.53 | RNA-binding protein 38 OS=Gallus gallus OX=9031 GN=RBM38 PE=2 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
A0A6J1HB82 | 1.2e-152 | 98.91 | RNA-binding protein 24 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111461225 ... | [more] |
A0A6J1H998 | 6.7e-151 | 98.55 | RNA-binding protein 24 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111461225 ... | [more] |
A0A6J1KX91 | 6.9e-148 | 96.74 | RNA-binding protein 38 OS=Cucurbita maxima OX=3661 GN=LOC111497969 PE=4 SV=1 | [more] |
A0A1S3CBZ0 | 4.2e-129 | 83.74 | RNA-binding protein 24-B OS=Cucumis melo OX=3656 GN=LOC103498947 PE=4 SV=1 | [more] |
A0A0A0K998 | 2.3e-127 | 83.04 | RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G087740 PE=4 SV... | [more] |
Match Name | E-value | Identity | Description | |
AT2G46780.1 | 3.2e-65 | 50.45 | RNA-binding (RRM/RBD/RNP motifs) family protein | [more] |
AT1G20880.1 | 9.2e-44 | 48.15 | RNA-binding (RRM/RBD/RNP motifs) family protein | [more] |
AT1G20880.2 | 9.2e-44 | 48.15 | RNA-binding (RRM/RBD/RNP motifs) family protein | [more] |
AT1G22910.1 | 1.2e-40 | 45.65 | RNA-binding (RRM/RBD/RNP motifs) family protein | [more] |
AT1G22910.3 | 1.6e-40 | 45.49 | RNA-binding (RRM/RBD/RNP motifs) family protein | [more] |