Carg04983 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg04983
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	RNA-binding protein 38
Location	Carg_Chr08: 850577 .. 852810 (+)
RNA-Seq Expression	Carg04983
Synteny	Carg04983

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCTCGCTGTTCTTCATCGATATCATATTGTCTTTAGATATATCGTATAATGTCCCTTTCATTTCAAATATAAATACACATTATTTTGCTGTTTTGCTGTTTTTAAACAAAATTTCATCCCAAAACAGTATTGATTTTCTCATTAATGGTGTCGCTGTTTGAGGAATCTGGGTAGTTGTCGCCGTTTGTGTATGTGGAGAAACGGGTAGTTTTTAGATTACCCTAAAAAAAAAAAAAAATTAAATTAAATCCTGAGAGAAAAATGGGAATCCATTGATTTGTTCTTCAAAACTTGTTCGTGTTCTTCCGGCTTCGATTCCTTCTCTGCATTTTGGGTCTCTGTTTTCTGGGAGAGAGGCAGATTTTTTGTGTTTCTTCTCTCTCCCTCTCTATATTTTGCCCTTATGTCTCAGCCGCGGCCATTTCATAGCAATAATAGCGTTGGCGGCCAATACAATGATACCACTTTCACCAAAATCTTCGTCGGAGGCTTGGCTTGGGAGACTCAGCGGCATACAATGAGAAGGTTTTTTGAGCAATTTGGTGAGATTTTGGAAGCTGTTGTTATTACTGACAAGAACACTGGCAGATCCAAGGGCTATGGATTTGTAAGTGTCCCCTTTCCCCTTCCGTTTTTTCTTTGTCGAAATGGGGATTTCATTTGGTGTTCTTCTGGGTTTTTTAGGTCACATTTAAGGATCCTGATGCTGCCATTAGAGCTTGTCAAAACCCTTCCCCTGTGATCGATGGAAGAAGGGCTAATTGCAATCTTGCTTCCCTTGGTGCTCATAAGCCTCAACATGGTTCTTGATTGTTCTTTCTTTTTGTTTTCGTCTCTTAAATGGATCATATTAGTTTATGCATGCAAGGTGTTTGATATTTTGCCTCTTCCAAAACCTGTGATGACTTCCTTCAATGGAGGCCTCTGAATCTGTGTTTTTTGTTGTGGAGGGATATATGAAATCTAAACAAACAAAGGAAGCCATGTTTTTCAAAGATTAACCACAAAAGATTGAACAAATTTGCAGGTGGTGGTGGAAGATTTAGAGGTCCATCTGGGATTGTGACCCCTCCTGCTTATCATGTTTCTTCATCGTCTTATGTTCATCAGCCCACTTCTCAATATCCATTCCCTCTTTCAGCTTATGGGTAAGGTTGCAAGAGGAATCATTAATGCATGAACAAACCCAAGTTCTCAATTTTCCTGTTTTTTTGATTCAATCTGTTCTTTTTGATTCTTTTGGCCTAATTTCAGCTATTCTGGATATTCACAAGACAGGATTTATCCAATGGTGCGAATGTTTTAATGTTGGTTTGTGTTTGTAATGTTCTTAGCATTGATTTGATCTGAGCTTGGTCGTGTTTTGTAAGCAGAACTATTATGGTGTTTATGGTGGCCAACAATTTTCTCCTTATTACTCTGCAAACGCGATTCCGGGACCAGCTGGAATGTTTCAAAATCTCTATCCGTATTACGCTCAAAGTAGCCAGGGATACGAGTTCGGAGTCCAGTATCCACACCTAATGCAGTACCCGTATCTTCCTCAGCAGCACGGTTCGACCGGTATCCTATCACTGCCTGTCTCGACCGCAACAGGAACAACCAGTGCAGGTGATTCTTGTAATCTAATCCTTGTTATCTAAAGAATGTCATTCGTTTGGAGCATGTTGGTTTTGAAAGTGAATGTAACAGGTGCAGCAGCAACGACGACGACGACAATGGCAGTTGGAGGATCGGGGCCTCTACAAACTTCTTCTGCGGTAGCAACCGAACCGAATTCTTCCGAGGTAATCTCAACTGGATGACACAAATGCCTTGTTGTCACACGCTAACCACATCGACAAAGCTTGAATACTGAATAACAATGGCAAGTTTTTAAGTCGTGTGATTCGATAAGAAGGATGAGGAAAAGGAAAAGGAAATTCACGTTCCAGCATCGTCAAGTCGTTCATGAAAACGTCGGTAACAAGCATATCCCATCTCTATCAAGTATCAACATTATTTACGTTTGGTCATCTGCCATTAGTTTGTTAGAACAATTAGCTTAAGAATTTTATTCATTCATGTATTATGCGAAAAGACGGGGAACCAAATGAAGGGTTTGGATTCTTCCCGTGTTTCGTTCTGACTGCAACAAGACGATCGTGTCGGGGAAGCACGTAGCCTCCTACGACACTGTCTTGTTTCGATATGATTAACCGTGTACGGTTCAAAAGATTGATTTTATATCTTT

mRNA sequence

CTCTCGCTGTTCTTCATCGATATCATATTGTCTTTAGATATATCGTATAATGTCCCTTTCATTTCAAATATAAATACACATTATTTTGCTGTTTTGCTGTTTTTAAACAAAATTTCATCCCAAAACAGTATTGATTTTCTCATTAATGGTGTCGCTGTTTGAGGAATCTGGGTAGTTGTCGCCGTTTGTGTATGTGGAGAAACGGGTAGTTTTTAGATTACCCTAAAAAAAAAAAAAAATTAAATTAAATCCTGAGAGAAAAATGGGAATCCATTGATTTGTTCTTCAAAACTTGTTCGTGTTCTTCCGGCTTCGATTCCTTCTCTGCATTTTGGGTCTCTGTTTTCTGGGAGAGAGGCAGATTTTTTGTGTTTCTTCTCTCTCCCTCTCTATATTTTGCCCTTATGTCTCAGCCGCGGCCATTTCATAGCAATAATAGCGTTGGCGGCCAATACAATGATACCACTTTCACCAAAATCTTCGTCGGAGGCTTGGCTTGGGAGACTCAGCGGCATACAATGAGAAGGTTTTTTGAGCAATTTGGTGAGATTTTGGAAGCTGTTGTTATTACTGACAAGAACACTGGCAGATCCAAGGGCTATGGATTTGTCACATTTAAGGATCCTGATGCTGCCATTAGAGCTTGTCAAAACCCTTCCCCTGTGATCGATGGAAGAAGGGCTAATTGCAATCTTGCTTCCCTTGGTGCTCATAAGCCTCAACATGGTGGTGGTGGAAGATTTAGAGGTCCATCTGGGATTGTGACCCCTCCTGCTTATCATGTTTCTTCATCGTCTTATGTTCATCAGCCCACTTCTCAATATCCATTCCCTCTTTCAGCTTATGGCTATTCTGGATATTCACAAGACAGGATTTATCCAATGAACTATTATGGTGTTTATGGTGGCCAACAATTTTCTCCTTATTACTCTGCAAACGCGATTCCGGGACCAGCTGGAATGTTTCAAAATCTCTATCCGTATTACGCTCAAAGTAGCCAGGGATACGAGTTCGGAGTCCAGTATCCACACCTAATGCAGTACCCGTATCTTCCTCAGCAGCACGGTTCGACCGGTATCCTATCACTGCCTGTCTCGACCGCAACAGGAACAACCAGTGCAGGTGCAGCAGCAACGACGACGACGACAATGGCAGTTGGAGGATCGGGGCCTCTACAAACTTCTTCTGCGGTAGCAACCGAACCGAATTCTTCCGAGGTAATCTCAACTGGATGACACAAATGCCTTGTTGTCACACGCTAACCACATCGACAAAGCTTGAATACTGAATAACAATGGCAAGTTTTTAAGTCGTGTGATTCGATAAGAAGGATGAGGAAAAGGAAAAGGAAATTCACGTTCCAGCATCGTCAAGTCGTTCATGAAAACGTCGGTAACAAGCATATCCCATCTCTATCAAGTATCAACATTATTTACGTTTGGTCATCTGCCATTAGTTTGTTAGAACAATTAGCTTAAGAATTTTATTCATTCATGTATTATGCGAAAAGACGGGGAACCAAATGAAGGGTTTGGATTCTTCCCGTGTTTCGTTCTGACTGCAACAAGACGATCGTGTCGGGGAAGCACGTAGCCTCCTACGACACTGTCTTGTTTCGATATGATTAACCGTGTACGGTTCAAAAGATTGATTTTATATCTTT

Coding sequence (CDS)

ATGTCTCAGCCGCGGCCATTTCATAGCAATAATAGCGTTGGCGGCCAATACAATGATACCACTTTCACCAAAATCTTCGTCGGAGGCTTGGCTTGGGAGACTCAGCGGCATACAATGAGAAGGTTTTTTGAGCAATTTGGTGAGATTTTGGAAGCTGTTGTTATTACTGACAAGAACACTGGCAGATCCAAGGGCTATGGATTTGTCACATTTAAGGATCCTGATGCTGCCATTAGAGCTTGTCAAAACCCTTCCCCTGTGATCGATGGAAGAAGGGCTAATTGCAATCTTGCTTCCCTTGGTGCTCATAAGCCTCAACATGGTGGTGGTGGAAGATTTAGAGGTCCATCTGGGATTGTGACCCCTCCTGCTTATCATGTTTCTTCATCGTCTTATGTTCATCAGCCCACTTCTCAATATCCATTCCCTCTTTCAGCTTATGGCTATTCTGGATATTCACAAGACAGGATTTATCCAATGAACTATTATGGTGTTTATGGTGGCCAACAATTTTCTCCTTATTACTCTGCAAACGCGATTCCGGGACCAGCTGGAATGTTTCAAAATCTCTATCCGTATTACGCTCAAAGTAGCCAGGGATACGAGTTCGGAGTCCAGTATCCACACCTAATGCAGTACCCGTATCTTCCTCAGCAGCACGGTTCGACCGGTATCCTATCACTGCCTGTCTCGACCGCAACAGGAACAACCAGTGCAGGTGCAGCAGCAACGACGACGACGACAATGGCAGTTGGAGGATCGGGGCCTCTACAAACTTCTTCTGCGGTAGCAACCGAACCGAATTCTTCCGAGGTAATCTCAACTGGATGA

Protein sequence

MSQPRPFHSNNSVGGQYNDTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPQHGGGGRFRGPSGIVTPPAYHVSSSSYVHQPTSQYPFPLSAYGYSGYSQDRIYPMNYYGVYGGQQFSPYYSANAIPGPAGMFQNLYPYYAQSSQGYEFGVQYPHLMQYPYLPQQHGSTGILSLPVSTATGTTSAGAAATTTTTMAVGGSGPLQTSSAVATEPNSSEVISTG

Homology

[Close]

BLAST of Carg04983 vs. NCBI nr
Match: KAG7025354.1 (putative RNA-binding protein ARP1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 555.1 bits (1429), Expect = 3.5e-154
Identity = 276/276 (100.00%), Postives = 276/276 (100.00%), Query Frame = 0


Query: 1   MSQPRPFHSNNSVGGQYNDTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEAVVITDKNT 60
           MSQPRPFHSNNSVGGQYNDTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEAVVITDKNT
Sbjct: 1   MSQPRPFHSNNSVGGQYNDTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEAVVITDKNT 60

Query: 61  GRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPQHGGGGRFRGPSGIV 120
           GRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPQHGGGGRFRGPSGIV
Sbjct: 61  GRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPQHGGGGRFRGPSGIV 120

Query: 121 TPPAYHVSSSSYVHQPTSQYPFPLSAYGYSGYSQDRIYPMNYYGVYGGQQFSPYYSANAI 180
           TPPAYHVSSSSYVHQPTSQYPFPLSAYGYSGYSQDRIYPMNYYGVYGGQQFSPYYSANAI
Sbjct: 121 TPPAYHVSSSSYVHQPTSQYPFPLSAYGYSGYSQDRIYPMNYYGVYGGQQFSPYYSANAI 180

Query: 181 PGPAGMFQNLYPYYAQSSQGYEFGVQYPHLMQYPYLPQQHGSTGILSLPVSTATGTTSAG 240
           PGPAGMFQNLYPYYAQSSQGYEFGVQYPHLMQYPYLPQQHGSTGILSLPVSTATGTTSAG
Sbjct: 181 PGPAGMFQNLYPYYAQSSQGYEFGVQYPHLMQYPYLPQQHGSTGILSLPVSTATGTTSAG 240

Query: 241 AAATTTTTMAVGGSGPLQTSSAVATEPNSSEVISTG 277
           AAATTTTTMAVGGSGPLQTSSAVATEPNSSEVISTG
Sbjct: 241 AAATTTTTMAVGGSGPLQTSSAVATEPNSSEVISTG 276

[Close]

BLAST of Carg04983 vs. NCBI nr
Match: XP_022960509.1 (RNA-binding protein 24 isoform X1 [Cucurbita moschata])

HSP 1 Score: 548.9 bits (1413), Expect = 2.5e-152
Identity = 273/276 (98.91%), Postives = 274/276 (99.28%), Query Frame = 0


Query: 1   MSQPRPFHSNNSVGGQYNDTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEAVVITDKNT 60
           MSQPRPFHSN SVGGQYNDTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEAVVITDKNT
Sbjct: 1   MSQPRPFHSNYSVGGQYNDTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEAVVITDKNT 60

Query: 61  GRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPQHGGGGRFRGPSGIV 120
           GRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPQHGGGGRFRGPSGIV
Sbjct: 61  GRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPQHGGGGRFRGPSGIV 120

Query: 121 TPPAYHVSSSSYVHQPTSQYPFPLSAYGYSGYSQDRIYPMNYYGVYGGQQFSPYYSANAI 180
           TPPAYHVSSSSYVHQPT+QYPFPLSAYGYSGYSQDRIYPMNYYGVYGGQQFSPYYSANAI
Sbjct: 121 TPPAYHVSSSSYVHQPTTQYPFPLSAYGYSGYSQDRIYPMNYYGVYGGQQFSPYYSANAI 180

Query: 181 PGPAGMFQNLYPYYAQSSQGYEFGVQYPHLMQYPYLPQQHGSTGILSLPVSTATGTTSAG 240
           PGPAGMFQNLYPYYAQSS GYEFGVQYPHLMQYPYLPQQHGSTGILSLPVSTATGTTSAG
Sbjct: 181 PGPAGMFQNLYPYYAQSSHGYEFGVQYPHLMQYPYLPQQHGSTGILSLPVSTATGTTSAG 240

Query: 241 AAATTTTTMAVGGSGPLQTSSAVATEPNSSEVISTG 277
           AAATTTTTMAVGGSGPLQTSSAVATEPNSSEVISTG
Sbjct: 241 AAATTTTTMAVGGSGPLQTSSAVATEPNSSEVISTG 276

[Close]

BLAST of Carg04983 vs. NCBI nr
Match: XP_023513417.1 (RNA-binding protein 38 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 543.1 bits (1398), Expect = 1.4e-150
Identity = 273/278 (98.20%), Postives = 273/278 (98.20%), Query Frame = 0


Query: 1   MSQPRPFHSNNSVGGQYNDTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEAVVITDKNT 60
           MSQPRPFHSNNSVGGQYNDTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEAVVITDKNT
Sbjct: 1   MSQPRPFHSNNSVGGQYNDTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEAVVITDKNT 60

Query: 61  GRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPQHGGGGRFRGPSGIV 120
           GRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPQHGGGGRFRGPSGIV
Sbjct: 61  GRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPQHGGGGRFRGPSGIV 120

Query: 121 TPPAYHVSSSSYVHQPTSQYPFPLSAYGYSGYSQDRIYPMNYYGVYGGQQFSPYYSANAI 180
           TPPAYHVSSSSYVHQPTSQYPFPLSAYGYSGYSQDRIYPMNYYGVYGGQQFSPYYSANAI
Sbjct: 121 TPPAYHVSSSSYVHQPTSQYPFPLSAYGYSGYSQDRIYPMNYYGVYGGQQFSPYYSANAI 180

Query: 181 PGPAGMFQNLYPYYAQSSQGYEFGVQYPHLMQYPYLPQQHGSTGILSLPVSTATGTTSAG 240
           PGPAGMFQNL PYYAQSSQGYEFGVQYPHLMQYPYLPQQHGSTGILSLPVSTA GTTSAG
Sbjct: 181 PGPAGMFQNLCPYYAQSSQGYEFGVQYPHLMQYPYLPQQHGSTGILSLPVSTAAGTTSAG 240

Query: 241 AAA--TTTTTMAVGGSGPLQTSSAVATEPNSSEVISTG 277
           AA   TTTTTMAVGGSGPLQTSSAVATEPNSSEVISTG
Sbjct: 241 AATTMTTTTTMAVGGSGPLQTSSAVATEPNSSEVISTG 278

[Close]

BLAST of Carg04983 vs. NCBI nr
Match: XP_022960510.1 (RNA-binding protein 24 isoform X2 [Cucurbita moschata])

HSP 1 Score: 543.1 bits (1398), Expect = 1.4e-150
Identity = 272/276 (98.55%), Postives = 273/276 (98.91%), Query Frame = 0


Query: 1   MSQPRPFHSNNSVGGQYNDTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEAVVITDKNT 60
           MSQPRPFHSN SVGGQYNDTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEAVVITDKNT
Sbjct: 1   MSQPRPFHSNYSVGGQYNDTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEAVVITDKNT 60

Query: 61  GRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPQHGGGGRFRGPSGIV 120
           GRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPQHGGGGRFRGPSGIV
Sbjct: 61  GRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPQHGGGGRFRGPSGIV 120

Query: 121 TPPAYHVSSSSYVHQPTSQYPFPLSAYGYSGYSQDRIYPMNYYGVYGGQQFSPYYSANAI 180
           TPPAYHVSSSSYVHQPT+QYPFPLSAYGYSGYSQDRIYPMNYYGVYGGQQFSPYYSANAI
Sbjct: 121 TPPAYHVSSSSYVHQPTTQYPFPLSAYGYSGYSQDRIYPMNYYGVYGGQQFSPYYSANAI 180

Query: 181 PGPAGMFQNLYPYYAQSSQGYEFGVQYPHLMQYPYLPQQHGSTGILSLPVSTATGTTSAG 240
           PGPAGMFQNLYPYYAQSS GYEFGVQYPHLMQYPYLPQQHGSTGILSLPVSTATGTTSAG
Sbjct: 181 PGPAGMFQNLYPYYAQSSHGYEFGVQYPHLMQYPYLPQQHGSTGILSLPVSTATGTTSAG 240

Query: 241 AAATTTTTMAVGGSGPLQTSSAVATEPNSSEVISTG 277
            AATTTTTMAVGGSGPLQTSSAVATEPNSSEVISTG
Sbjct: 241 -AATTTTTMAVGGSGPLQTSSAVATEPNSSEVISTG 275

[Close]

BLAST of Carg04983 vs. NCBI nr
Match: XP_023004764.1 (RNA-binding protein 38 [Cucurbita maxima])

HSP 1 Score: 533.1 bits (1372), Expect = 1.4e-147
Identity = 267/276 (96.74%), Postives = 269/276 (97.46%), Query Frame = 0


Query: 1   MSQPRPFHSNNSVGGQYNDTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEAVVITDKNT 60
           MSQ RPFHSNNSVGGQYNDTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEAVVITDKNT
Sbjct: 1   MSQQRPFHSNNSVGGQYNDTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEAVVITDKNT 60

Query: 61  GRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPQHGGGGRFRGPSGIV 120
           GRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPQHGGGGR RGPSGIV
Sbjct: 61  GRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPQHGGGGRSRGPSGIV 120

Query: 121 TPPAYHVSSSSYVHQPTSQYPFPLSAYGYSGYSQDRIYPMNYYGVYGGQQFSPYYSANAI 180
            PPAYHVSSSSYVHQPT+QYPFPLSAYGYSGYSQDRIYPMNYYGVYGGQQFSPYYSAN I
Sbjct: 121 NPPAYHVSSSSYVHQPTTQYPFPLSAYGYSGYSQDRIYPMNYYGVYGGQQFSPYYSANVI 180

Query: 181 PGPAGMFQNLYPYYAQSSQGYEFGVQYPHLMQYPYLPQQHGSTGILSLPVSTATGTTSAG 240
           PGPAGMFQNLYPYYAQSSQGYEFGVQYPHLMQYPYLPQQH STGILSLPVSTATGTTSAG
Sbjct: 181 PGPAGMFQNLYPYYAQSSQGYEFGVQYPHLMQYPYLPQQHSSTGILSLPVSTATGTTSAG 240

Query: 241 AAATTTTTMAVGGSGPLQTSSAVATEPNSSEVISTG 277
            A T+TTTMAVGGSGPLQTSSAVATEPNSSEVISTG
Sbjct: 241 -ATTSTTTMAVGGSGPLQTSSAVATEPNSSEVISTG 275

[Close]

BLAST of Carg04983 vs. ExPASy Swiss-Prot
Match: Q9H0Z9 (RNA-binding protein 38 OS=Homo sapiens OX=9606 GN=RBM38 PE=1 SV=2)

HSP 1 Score: 126.3 bits (316), Expect = 5.3e-28
Identity = 61/103 (59.22%), Postives = 79/103 (76.70%), Query Frame = 0


Query: 4   PRPFHSNNSVGGQYNDTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEAVVITDKNTGRS 63
           PRP  +  ++ G   DTTFTKIFVGGL + T   ++R++FE FG+I EAVVITD+ TG+S
Sbjct: 15  PRPLAAPGAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKS 74

Query: 64  KGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPQ 107
           +GYGFVT  D  AA RAC++P+P+IDGR+AN NLA LGA KP+
Sbjct: 75  RGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGA-KPR 116

[Close]

BLAST of Carg04983 vs. ExPASy Swiss-Prot
Match: Q62176 (RNA-binding protein 38 OS=Mus musculus OX=10090 GN=Rbm38 PE=1 SV=2)

HSP 1 Score: 125.9 bits (315), Expect = 6.9e-28
Identity = 61/103 (59.22%), Postives = 80/103 (77.67%), Query Frame = 0


Query: 4   PRPFHSNNSVGGQYNDTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEAVVITDKNTGRS 63
           PRP  + +++ G   DTTFTKIFVGGL + T   ++R++FE FG+I EAVVITD+ TG+S
Sbjct: 13  PRPSAAPSAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKS 72

Query: 64  KGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPQ 107
           +GYGFVT  D  AA RAC++P+P+IDGR+AN NLA LGA KP+
Sbjct: 73  RGYGFVTMADRAAADRACKDPNPIIDGRKANVNLAYLGA-KPR 114

[Close]

BLAST of Carg04983 vs. ExPASy Swiss-Prot
Match: Q9M1S3 (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 9.0e-28
Identity = 90/227 (39.65%), Postives = 115/227 (50.66%), Query Frame = 0


Query: 9   SNNSVGGQYNDTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEAVVITDKNTGRSKGYGF 68
           ++N+V G + DT  TK+FVGGLAW+T +  M   F ++G+ILEAV+I+DK T RSKGYGF
Sbjct: 3   TSNNVNGCFGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGF 62

Query: 69  VTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAH--------KPQHG--GGGRFRGPS- 128
           VTFKD  AA RAC++ +P+I+GRRANCNLASLG           PQ G   G R   P  
Sbjct: 63  VTFKDAKAATRACEDSTPIINGRRANCNLASLGGRLRKSPTMTSPQQGPKNGNRATPPHV 122

Query: 129 GIVTPPAYHVSSSSYVHQPTSQYPFPLSAYGY-SGYSQDRIYPMNYYGVYGGQQFSPYYS 188
           G  +   Y    ++  HQ  +    P   YGY S Y    +      G  GG   + YY 
Sbjct: 123 GNHSQWYYPSGFTNQQHQQQNHQAVPF--YGYPSAYVAPNMTFNQKVGYVGGTYMNGYY- 182

Query: 189 ANAIPGPAGMFQNLYPYYAQSSQGYEF----GVQYPHLMQYPYLPQQ 220
           A   P P    Q  Y ++     G           P    YPY   Q
Sbjct: 183 AQMQPQPQSQPQPQYYHHHMYGGGRVMVGAASPMVPFYTVYPYHQSQ 226

[Close]

BLAST of Carg04983 vs. ExPASy Swiss-Prot
Match: Q76LC6 (RNA-binding protein 24 OS=Danio rerio OX=7955 GN=rbm24 PE=2 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 3.8e-26
Identity = 86/212 (40.57%), Postives = 111/212 (52.36%), Query Frame = 0


Query: 19  DTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPDAAI 78
           DTT+TKIFVGGL + T   ++R++FE FGEI EAVVITD+ TG+S+GYGFVT  D  AA 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAAD 66

Query: 79  RACQNPSPVIDGRRANCNLASLGAHKPQHGGGGRFRGPSGIVTPPAYHVSSSSYVHQPTS 138
           RAC++P+P+IDGR+AN NLA LGA KP      R   P      P  H +     +   +
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGA-KP------RVMQPGFTFGVPQIHPAFIQRPYGIPT 126

Query: 139 QYPFPLSAYGYSGYSQDRIYP-------MNYYGVYGGQQFSPYYSANAIPGPAGMFQNLY 198
            Y +P  A+         I P        + Y  Y G  ++ Y SA      A   Q  Y
Sbjct: 127 HYVYP-QAFMQPSVVIPHIQPTATSATASSPYIDYTGAAYAQYASAATAAAAAAYEQ--Y 186

Query: 199 PYYAQ-SSQGYEFGVQYPHLMQYPYLPQQHGS 223
           PY A  ++ GY     Y + MQ P      GS
Sbjct: 187 PYAASPAATGYVAAAGYGYAMQQPLATAAPGS 208

[Close]

BLAST of Carg04983 vs. ExPASy Swiss-Prot
Match: Q5ZJX4 (RNA-binding protein 38 OS=Gallus gallus OX=9031 GN=RBM38 PE=2 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.2e-24
Identity = 89/231 (38.53%), Postives = 114/231 (49.35%), Query Frame = 0


Query: 19  DTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPDAAI 78
           DTTFTKIFVGGL + T   ++R++FE FG+I EAVVITD+ TG+S+GYGFVT  D  AA 
Sbjct: 7   DTTFTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 79  RACQNPSPVIDGRRANCNLASLGAHKPQHGGGGRFRGPSGIVTPPAYHVSSSSYVHQPTS 138
           RAC++P+P+IDGR+AN NLA LGA             P  I T     V     +H    
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAK------------PRSIQTGFTIGVQQ---LHPAFI 126

Query: 139 QYPFPLSAYGYSGYSQDRIYPMNYYGVYGGQQFSPYYSANAIPGPAGMFQNLYPYYAQSS 198
           Q PF L+ +    Y Q  I P                 +  IP P     + Y  Y  +S
Sbjct: 127 QRPFGLTPHYV--YPQAIIQP-----------------SVVIPTPVQSIASPYIDYTAAS 186

Query: 199 QGYEFGVQYPHLM--QYPYLPQQ------HGSTGILSLPVSTATGTTSAGA 242
           Q Y    QY      QYPY          +G TG +  P++ +T    A A
Sbjct: 187 QAYS---QYTTAAYDQYPYAASPAAGFVGYGYTGAVQPPITASTPAAPATA 200

[Close]

BLAST of Carg04983 vs. ExPASy TrEMBL
Match: A0A6J1HB82 (RNA-binding protein 24 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111461225 PE=4 SV=1)

HSP 1 Score: 548.9 bits (1413), Expect = 1.2e-152
Identity = 273/276 (98.91%), Postives = 274/276 (99.28%), Query Frame = 0


Query: 1   MSQPRPFHSNNSVGGQYNDTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEAVVITDKNT 60
           MSQPRPFHSN SVGGQYNDTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEAVVITDKNT
Sbjct: 1   MSQPRPFHSNYSVGGQYNDTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEAVVITDKNT 60

Query: 61  GRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPQHGGGGRFRGPSGIV 120
           GRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPQHGGGGRFRGPSGIV
Sbjct: 61  GRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPQHGGGGRFRGPSGIV 120

Query: 121 TPPAYHVSSSSYVHQPTSQYPFPLSAYGYSGYSQDRIYPMNYYGVYGGQQFSPYYSANAI 180
           TPPAYHVSSSSYVHQPT+QYPFPLSAYGYSGYSQDRIYPMNYYGVYGGQQFSPYYSANAI
Sbjct: 121 TPPAYHVSSSSYVHQPTTQYPFPLSAYGYSGYSQDRIYPMNYYGVYGGQQFSPYYSANAI 180

Query: 181 PGPAGMFQNLYPYYAQSSQGYEFGVQYPHLMQYPYLPQQHGSTGILSLPVSTATGTTSAG 240
           PGPAGMFQNLYPYYAQSS GYEFGVQYPHLMQYPYLPQQHGSTGILSLPVSTATGTTSAG
Sbjct: 181 PGPAGMFQNLYPYYAQSSHGYEFGVQYPHLMQYPYLPQQHGSTGILSLPVSTATGTTSAG 240

Query: 241 AAATTTTTMAVGGSGPLQTSSAVATEPNSSEVISTG 277
           AAATTTTTMAVGGSGPLQTSSAVATEPNSSEVISTG
Sbjct: 241 AAATTTTTMAVGGSGPLQTSSAVATEPNSSEVISTG 276

[Close]

BLAST of Carg04983 vs. ExPASy TrEMBL
Match: A0A6J1H998 (RNA-binding protein 24 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111461225 PE=4 SV=1)

HSP 1 Score: 543.1 bits (1398), Expect = 6.7e-151
Identity = 272/276 (98.55%), Postives = 273/276 (98.91%), Query Frame = 0


Query: 1   MSQPRPFHSNNSVGGQYNDTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEAVVITDKNT 60
           MSQPRPFHSN SVGGQYNDTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEAVVITDKNT
Sbjct: 1   MSQPRPFHSNYSVGGQYNDTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEAVVITDKNT 60

Query: 61  GRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPQHGGGGRFRGPSGIV 120
           GRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPQHGGGGRFRGPSGIV
Sbjct: 61  GRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPQHGGGGRFRGPSGIV 120

Query: 121 TPPAYHVSSSSYVHQPTSQYPFPLSAYGYSGYSQDRIYPMNYYGVYGGQQFSPYYSANAI 180
           TPPAYHVSSSSYVHQPT+QYPFPLSAYGYSGYSQDRIYPMNYYGVYGGQQFSPYYSANAI
Sbjct: 121 TPPAYHVSSSSYVHQPTTQYPFPLSAYGYSGYSQDRIYPMNYYGVYGGQQFSPYYSANAI 180

Query: 181 PGPAGMFQNLYPYYAQSSQGYEFGVQYPHLMQYPYLPQQHGSTGILSLPVSTATGTTSAG 240
           PGPAGMFQNLYPYYAQSS GYEFGVQYPHLMQYPYLPQQHGSTGILSLPVSTATGTTSAG
Sbjct: 181 PGPAGMFQNLYPYYAQSSHGYEFGVQYPHLMQYPYLPQQHGSTGILSLPVSTATGTTSAG 240

Query: 241 AAATTTTTMAVGGSGPLQTSSAVATEPNSSEVISTG 277
            AATTTTTMAVGGSGPLQTSSAVATEPNSSEVISTG
Sbjct: 241 -AATTTTTMAVGGSGPLQTSSAVATEPNSSEVISTG 275

[Close]

BLAST of Carg04983 vs. ExPASy TrEMBL
Match: A0A6J1KX91 (RNA-binding protein 38 OS=Cucurbita maxima OX=3661 GN=LOC111497969 PE=4 SV=1)

HSP 1 Score: 533.1 bits (1372), Expect = 6.9e-148
Identity = 267/276 (96.74%), Postives = 269/276 (97.46%), Query Frame = 0


Query: 1   MSQPRPFHSNNSVGGQYNDTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEAVVITDKNT 60
           MSQ RPFHSNNSVGGQYNDTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEAVVITDKNT
Sbjct: 1   MSQQRPFHSNNSVGGQYNDTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEAVVITDKNT 60

Query: 61  GRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPQHGGGGRFRGPSGIV 120
           GRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPQHGGGGR RGPSGIV
Sbjct: 61  GRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPQHGGGGRSRGPSGIV 120

Query: 121 TPPAYHVSSSSYVHQPTSQYPFPLSAYGYSGYSQDRIYPMNYYGVYGGQQFSPYYSANAI 180
            PPAYHVSSSSYVHQPT+QYPFPLSAYGYSGYSQDRIYPMNYYGVYGGQQFSPYYSAN I
Sbjct: 121 NPPAYHVSSSSYVHQPTTQYPFPLSAYGYSGYSQDRIYPMNYYGVYGGQQFSPYYSANVI 180

Query: 181 PGPAGMFQNLYPYYAQSSQGYEFGVQYPHLMQYPYLPQQHGSTGILSLPVSTATGTTSAG 240
           PGPAGMFQNLYPYYAQSSQGYEFGVQYPHLMQYPYLPQQH STGILSLPVSTATGTTSAG
Sbjct: 181 PGPAGMFQNLYPYYAQSSQGYEFGVQYPHLMQYPYLPQQHSSTGILSLPVSTATGTTSAG 240

Query: 241 AAATTTTTMAVGGSGPLQTSSAVATEPNSSEVISTG 277
            A T+TTTMAVGGSGPLQTSSAVATEPNSSEVISTG
Sbjct: 241 -ATTSTTTMAVGGSGPLQTSSAVATEPNSSEVISTG 275

[Close]

BLAST of Carg04983 vs. ExPASy TrEMBL
Match: A0A1S3CBZ0 (RNA-binding protein 24-B OS=Cucumis melo OX=3656 GN=LOC103498947 PE=4 SV=1)

HSP 1 Score: 470.7 bits (1210), Expect = 4.2e-129
Identity = 242/289 (83.74%), Postives = 256/289 (88.58%), Query Frame = 0


Query: 1   MSQPRPFH----SNN----SVGGQYNDTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEA 60
           MSQ R FH    SNN    S+GGQYNDTTFTKIFVGGLAWETQRHTMRR+FEQFGEILEA
Sbjct: 1   MSQQRQFHNINSSNNSSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA 60

Query: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHK-----PQH 120
           VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHK     PQH
Sbjct: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPTPQH 120

Query: 121 GGGGRFRGPSGIVTPPAYHVSSSSYVHQPTSQYPFPLSAYGYSGYSQDRIYPMNYYGVYG 180
           G GGRFRG SGIVTPPAYHVSSSSY+HQPTSQY FPLS YG++GYSQDRIYP+NYYGVYG
Sbjct: 121 GVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYG 180

Query: 181 GQQFSPYYSANAIPGPAGMFQNLYPYYAQSSQGYEFGVQYPHLMQYPYLPQQHGSTGILS 240
           GQQFSPYYSAN + GPAGMFQNLYPYYAQSSQGY FG+QYPHLMQYPYLPQQHGSTGILS
Sbjct: 181 GQQFSPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFGIQYPHLMQYPYLPQQHGSTGILS 240

Query: 241 LPVSTATGTTSAGAAATTTTTMAVGGSGPLQTSSAVATEPNSSEVISTG 277
           LP S A GTT++G  AT+TT +   GSGP Q SSAVA+EPNSSE+ISTG
Sbjct: 241 LPGSNALGTTTSGTTATSTTAV---GSGPSQASSAVASEPNSSELISTG 286

[Close]

BLAST of Carg04983 vs. ExPASy TrEMBL
Match: A0A0A0K998 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G087740 PE=4 SV=1)

HSP 1 Score: 464.9 bits (1195), Expect = 2.3e-127
Identity = 240/289 (83.04%), Postives = 253/289 (87.54%), Query Frame = 0


Query: 1   MSQPRPFH----SNN----SVGGQYNDTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEA 60
           MSQ R FH    SNN    S+GGQYNDTTFTKIFVGGLAWETQRHTMRR+FEQFGEILEA
Sbjct: 1   MSQQRQFHNINSSNNSSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA 60

Query: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHK-----PQH 120
           VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHK     PQH
Sbjct: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPTPQH 120

Query: 121 GGGGRFRGPSGIVTPPAYHVSSSSYVHQPTSQYPFPLSAYGYSGYSQDRIYPMNYYGVYG 180
           G GGRFRG SGIVTPPAYHVSSSSY+HQPTSQY FPLS YG++GYSQDRIYP+NYYGVYG
Sbjct: 121 GVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYG 180

Query: 181 GQQFSPYYSANAIPGPAGMFQNLYPYYAQSSQGYEFGVQYPHLMQYPYLPQQHGSTGILS 240
           GQQFSPYYSAN + GPAGMFQNLYPYYAQSSQGY FG+QYPHLMQYPYLPQQH STGILS
Sbjct: 181 GQQFSPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFGMQYPHLMQYPYLPQQHSSTGILS 240

Query: 241 LPVSTATGTTSAGAAATTTTTMAVGGSGPLQTSSAVATEPNSSEVISTG 277
           LP S A GTT++G  ATT T +   GSGP Q S AVA+EPNSSE+ISTG
Sbjct: 241 LPGSNALGTTTSGTTATTITAV---GSGPSQASPAVASEPNSSELISTG 286

[Close]

BLAST of Carg04983 vs. TAIR 10
Match: AT2G46780.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 246.1 bits (627), Expect = 3.2e-65
Identity = 170/337 (50.45%), Postives = 200/337 (59.35%), Query Frame = 0


Query: 1   MSQPRPFHSNNSVGGQYN--DTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEAVVITDK 60
           M+Q R F      GG  N  DT  TKIFVGGLAWETQR TMRR+FEQFGEI+EAVVITDK
Sbjct: 1   MAQQRQFQME---GGNNNTTDTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDK 60

Query: 61  NTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPQ-----HGGGGRF 120
           NTGRSKGYGFVTFK+ +AA+RACQN +PVIDGRRANCNLA LGA KP+       G GRF
Sbjct: 61  NTGRSKGYGFVTFKEAEAAMRACQNMNPVIDGRRANCNLACLGAQKPRPPTSPRHGTGRF 120

Query: 121 RGPS---GIVTP-PAYHVSSSS--YVHQP----TSQYPFPLSAYGYSGYSQDRIYPMNYY 180
           R P    G+V P P +  SSSS  +VHQ     T+Q+PFP S YG+SGYSQ+ +YPMNYY
Sbjct: 121 RSPGSGVGLVAPSPQFRGSSSSSAFVHQQQQQHTAQFPFPYSTYGFSGYSQEGMYPMNYY 180

Query: 181 G--VYGGQQFSPYYSANAIPGPAGMFQNLYPYY-----------------AQSSQGYEFG 240
              +YGGQQFSP Y  +   G  GMF   YPYY                 AQ  QG+ F 
Sbjct: 181 NHHLYGGQQFSP-YMGHPSAGSTGMFHGFYPYYPQYNAAQSSNQAQAQVQAQHHQGFSF- 240

Query: 241 VQY-----PHLMQYPYLPQQ-HGST-----------GILSLPVSTA---------TGTTS 276
            QY     P L+QYPYLP Q H S+            ILSLP S A         + +TS
Sbjct: 241 -QYTAPPAPPLLQYPYLPHQPHFSSQQQFSSQQPPPPILSLPTSLALSLPSSSSPSSSTS 300

[Close]

BLAST of Carg04983 vs. TAIR 10
Match: AT1G20880.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 174.9 bits (442), Expect = 9.2e-44
Identity = 104/216 (48.15%), Postives = 127/216 (58.80%), Query Frame = 0


Query: 7   FHSNNSVGGQYNDTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEAVVITDKNTGRSKGY 66
           FH  NS    + DTTFTK+FVGGLAWETQ  T+RR F+Q+G+ILEAVVITDKNTGRSKGY
Sbjct: 11  FHYLNS---PFGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGY 70

Query: 67  GFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKP--QHG----GGGRFRGPS--- 126
           GFVTF+DP+AA RAC +P+P+IDGRRANCNLASLG  +P  Q+       GR R PS   
Sbjct: 71  GFVTFRDPEAARRACVDPTPIIDGRRANCNLASLGRSRPPMQYAVIPHAPGRVRPPSPYV 130

Query: 127 -GIVTPPAYHVSSSSYVHQPTSQY-PFPLSAYGYSGYSQDRIYPMN--YYGVYGGQQFSP 186
             + +P   H  S  Y   PT  Y    +  YG + Y  D +Y  +  +YG Y GQQ+  
Sbjct: 131 GSVQSPRGLHFGSHPYHQPPTYNYQQGVVYPYGVTPYGPDYMYSQSQGFYGPYMGQQYLQ 190

Query: 187 YYSANAIPGPAGMFQNLYPYYAQSSQGYEFGVQYPH 210
            Y         G       +    + GY  G  Y H
Sbjct: 191 VYGVPGAVNSPGYQYGQLSHTIPGAHGYTAGQGYSH 223

[Close]

BLAST of Carg04983 vs. TAIR 10
Match: AT1G20880.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 174.9 bits (442), Expect = 9.2e-44
Identity = 104/216 (48.15%), Postives = 127/216 (58.80%), Query Frame = 0


Query: 7   FHSNNSVGGQYNDTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEAVVITDKNTGRSKGY 66
           FH  NS    + DTTFTK+FVGGLAWETQ  T+RR F+Q+G+ILEAVVITDKNTGRSKGY
Sbjct: 11  FHYLNS---PFGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGY 70

Query: 67  GFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKP--QHG----GGGRFRGPS--- 126
           GFVTF+DP+AA RAC +P+P+IDGRRANCNLASLG  +P  Q+       GR R PS   
Sbjct: 71  GFVTFRDPEAARRACVDPTPIIDGRRANCNLASLGRSRPPMQYAVIPHAPGRVRPPSPYV 130

Query: 127 -GIVTPPAYHVSSSSYVHQPTSQY-PFPLSAYGYSGYSQDRIYPMN--YYGVYGGQQFSP 186
             + +P   H  S  Y   PT  Y    +  YG + Y  D +Y  +  +YG Y GQQ+  
Sbjct: 131 GSVQSPRGLHFGSHPYHQPPTYNYQQGVVYPYGVTPYGPDYMYSQSQGFYGPYMGQQYLQ 190

Query: 187 YYSANAIPGPAGMFQNLYPYYAQSSQGYEFGVQYPH 210
            Y         G       +    + GY  G  Y H
Sbjct: 191 VYGVPGAVNSPGYQYGQLSHTIPGAHGYTAGQGYSH 223

[Close]

BLAST of Carg04983 vs. TAIR 10
Match: AT1G22910.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 164.5 bits (415), Expect = 1.2e-40
Identity = 105/230 (45.65%), Postives = 131/230 (56.96%), Query Frame = 0


Query: 19  DTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPDAAI 78
           DTT+TK+FVGGLAWET + TM++ FEQFGEILEAVVITDK +GRSKGYGFVTF++ +AA 
Sbjct: 9   DTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAAR 68

Query: 79  RACQNPSPVIDGRRANCNLASLGAHK-----PQHGGGGRFRGPSGIVTPPAYHVSSSSYV 138
            AC + +PVIDGRRANCNLASLG  +     P HGGGGR      +++            
Sbjct: 69  SACVDATPVIDGRRANCNLASLGLQRSKPSTPNHGGGGRINNMRVMMSTMQTGFGPPPPP 128

Query: 139 HQPT-SQYP-FPLSAYGYSGYSQD-RIYPMNYYGVYG---GQQFSPYYSANA----IPGP 198
             PT + YP  PL+ +GYS YS D   +P N YG+YG   G Q+  Y + N+    +   
Sbjct: 129 QPPTFTHYPHLPLNLFGYSPYSPDYSSFPTNLYGMYGCTSGGQYGVYGNRNSGGGGLTAA 188

Query: 199 AGMFQNLYP--------YYAQSSQGYEFGVQY-PHLMQYPYLPQQHGSTG 225
           A      YP         ++Q    Y     Y PH    P    Q G TG
Sbjct: 189 AASATPFYPCGGGHGGVQFSQPQPFYHHLSSYNPHHYSPPTFSMQQGVTG 238

[Close]

BLAST of Carg04983 vs. TAIR 10
Match: AT1G22910.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 164.1 bits (414), Expect = 1.6e-40
Identity = 106/233 (45.49%), Postives = 132/233 (56.65%), Query Frame = 0


Query: 19  DTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPDAAI 78
           DTT+TK+FVGGLAWET + TM++ FEQFGEILEAVVITDK +GRSKGYGFVTF++ +AA 
Sbjct: 9   DTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAAR 68

Query: 79  RACQNPSPVIDGRRANCNLASLGAHK-----PQHGGGGRFRGPSGIVTPPAYHVSSSSYV 138
            AC + +PVIDGRRANCNLASLG  +     P HGGGGR      +++            
Sbjct: 69  SACVDATPVIDGRRANCNLASLGLQRSKPSTPNHGGGGRINNMRVMMSTMQTGFGPPPPP 128

Query: 139 HQPT-SQYP-FPLSAYGYSGYSQD-RIYPMNYYGVYG---GQQFSPYYSANA----IPGP 198
             PT + YP  PL+ +GYS YS D   +P N YG+YG   G Q+  Y + N+    +   
Sbjct: 129 QPPTFTHYPHLPLNLFGYSPYSPDYSSFPTNLYGMYGCTSGGQYGVYGNRNSGGGGLTAA 188

Query: 199 AGMFQNLYP--------YYAQSSQGYEFGVQY-PHLMQYPYLPQQHGSTGILS 228
           A      YP         ++Q    Y     Y PH    P    Q GS   LS
Sbjct: 189 AASATPFYPCGGGHGGVQFSQPQPFYHHLSSYNPHHYSPPTFSMQQGSRNRLS 241

The following BLAST results are available for this feature:

BLAST of Carg04983 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7025354.1	3.5e-154	100.00	putative RNA-binding protein ARP1 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022960509.1	2.5e-152	98.91	RNA-binding protein 24 isoform X1 [Cucurbita moschata]	[more]
XP_023513417.1	1.4e-150	98.20	RNA-binding protein 38 [Cucurbita pepo subsp. pepo]	[more]
XP_022960510.1	1.4e-150	98.55	RNA-binding protein 24 isoform X2 [Cucurbita moschata]	[more]
XP_023004764.1	1.4e-147	96.74	RNA-binding protein 38 [Cucurbita maxima]	[more]

BLAST of Carg04983 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9H0Z9	5.3e-28	59.22	RNA-binding protein 38 OS=Homo sapiens OX=9606 GN=RBM38 PE=1 SV=2	[more]
Q62176	6.9e-28	59.22	RNA-binding protein 38 OS=Mus musculus OX=10090 GN=Rbm38 PE=1 SV=2	[more]
Q9M1S3	9.0e-28	39.65	Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 S...	[more]
Q76LC6	3.8e-26	40.57	RNA-binding protein 24 OS=Danio rerio OX=7955 GN=rbm24 PE=2 SV=1	[more]
Q5ZJX4	1.2e-24	38.53	RNA-binding protein 38 OS=Gallus gallus OX=9031 GN=RBM38 PE=2 SV=1	[more]

BLAST of Carg04983 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HB82	1.2e-152	98.91	RNA-binding protein 24 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111461225 ...	[more]
A0A6J1H998	6.7e-151	98.55	RNA-binding protein 24 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111461225 ...	[more]
A0A6J1KX91	6.9e-148	96.74	RNA-binding protein 38 OS=Cucurbita maxima OX=3661 GN=LOC111497969 PE=4 SV=1	[more]
A0A1S3CBZ0	4.2e-129	83.74	RNA-binding protein 24-B OS=Cucumis melo OX=3656 GN=LOC103498947 PE=4 SV=1	[more]
A0A0A0K998	2.3e-127	83.04	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G087740 PE=4 SV...	[more]

BLAST of Carg04983 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G46780.1	3.2e-65	50.45	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G20880.1	9.2e-44	48.15	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G20880.2	9.2e-44	48.15	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22910.1	1.2e-40	45.65	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22910.3	1.6e-40	45.49	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 24..96 e-value: 2.2E-24 score: 97.0
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 25..82 e-value: 1.8E-17 score: 62.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 23..100 score: 16.534245
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..116 e-value: 6.3E-26 score: 92.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 253..276
None	No IPR available	PANTHER	PTHR11176:SF33	SUBFAMILY NOT NAMED	coord: 2..264
None	No IPR available	CDD	cd12384	RRM_RBM24_RBM38_like	coord: 23..98 e-value: 8.60608E-46 score: 146.606
IPR037366	BOULE/DAZ family	PANTHER	PTHR11176	BOULE-RELATED	coord: 2..264
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 3..114

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg04983-RA	Carg04983-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030154	cell differentiation
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding