CSPI02G25850 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI02G25850
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptionprotein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like
LocationChr2: 21940193 .. 21944026 (-)
RNA-Seq ExpressionCSPI02G25850
SyntenyCSPI02G25850
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAACTATCGTAGAAACCCCTCAGACCCAAAGTAGGGTTTTAGCTTTAACCCTCAGCAAGCCAGCCATGAAGCAAGAGTCAATTCCCTCTTGTTCATATTCCGAAACCAAGAAGAACAACCTTCTGAATCTACCATTTCTTCTCATAATCAATGGCCTCAATTGGTGCTCGGTCTGCTTTCCGCTCATTCTCCGGTTCGGCACGCCGTGCTGCTGCTCACATCGGTTCTCAACCCAAGGCCTCATCATCCTCTCCCTTTCGCATGGCAACTAACAAACCCCTCTCTCATCGTACTTTCAGGTTCGTTTCTTAATGATTTTGCATCCGTTTTAAGTGCGAAAAGTTTCTGAATCTAGAGCTCTTTGAGTTTTTTTTTATTCTCCTCAGAAGTAGAACAACGAAAACAGTGTCCAATCTTCATCTTTATTTCTCTCTTCAGTGTTTTAGTTGCGAAACGTTTCAGTAAAATAAGGTAATCTATTTTGCTTGAAGGTGTGCGCCTGAGATGAGCTTCTGTTTGGAGTCAATGATGCCATTTCACTCTGTGTCGTCCTCAGCTTTGATGACTTCAATGCTCTCTATCTCGCGCCACAGCTGCGGTTGGCTCCCCGAAGGTGCATAACTGATAATTTATTTCTTTACTTTCTTCATCTGTTATGTGCTACATCAAAAGAATTTAGATCATATCCATAATTTCAGAATGAATTCTTCCGTGGACAAGAAAGAGTTGATAATTTTCTGGAAGCTGATTTTCTATTTGCATATGGTTTTCGTTGGATGAATTTTAGCTTTATAATAATTTTCATGGATCAAGAAAAATCAAGTTTAAGTGGGAGTAATGATCAACTGTATTTTGAAATAGTGATATCTATATTTAGGTTCAGGGGTCACATTAGCCACAGTGATCTGATGTTTCTGGTGAATGAAATATCTATGCTTTATTCTATGATTGAGGTAGTTAATGTGTTTGAGTCATTAGAACCTACACCATGAAAAGCTTTCTTGTTTTGAAAATGAAACCTTTCGTTGATTGAATGGAATAGGGGCCAAAGTGCGGGCACCCAAAGGTGATTACAGGTAAAGATGCTAATGGGAGACAAGATAAGAAAGACTTAAAATGTTAAAAGGGTGTTTATTTCTACACCAATACAAAGCAAATAACCAAATCACGAAAAAGATCAAAACGAGTAGAATCATTACGAAAAAGACGCTTGTTCCAACTCTCCCAAAGAAGCCAAAAGAAAGCTTGAATGATCGCCATCCAAAGCATTTTCTTGCGACCAGTAAAAGGGTGACCCACCAACAAGCAAGATAGATTATCAAACATATTATGGGAAAGAACCACTGGCCAACCGAAAGCATCAAGAATATATCACCAAAAATAGGAAGCAAAAGTACAATGATTAAAAAGGCGGGCAGCAGATTCAGAATGAGCTTCACACATATGACACCAAGAAGGAGAGATAACCATTTATGGCATACGATCTTGAAGGCGGTCAGCAATAGCACTATGACTGAGCTCCCACAAGAAAATTTTTATTTTCTAAGGATAACAATCCAACCAAATAGCCGAATAGACATCCGAAGCAGGGCGAATATCATTTCTCGCCAAACCATCCATAAGAGATAAAACCGACAAAGAGGAAGAAGGTCCGATTATCCAAATCCAAGAATCAGCAACCTCACAAAAAAGACAGATTGTAAATTCTGTGATAAAGCCATCCTCAACAATTTTAGATTCTGTGAGATTACAGTGAATACGCAAATGCCAAGCAGCAGCATCCTCGACCCATACATCAGCCACTTTGATATCTGGAAAACGAGCCAAACGAAAGAGACGAGGGAGAACATTCGAGAGAATACCACAACTAAGCCAGGGAGCCTTCCAAACTGAGGTTGATGAATCATTGCCAAGATGATGCTGTGTGCGGCTGGCCACCAAATCAGTAGTTTGACAAAGAGTCTCCACGGAGATTTGGATGAACACCAAATAGGCGAAGGCCAAATACAGTTAAAAAGAATAGTATTGGGCCACAATGAGTTGTCTCCACAAGGCATTAGATTCCTGCAAAAACCACCAGATCCATGTGGCAAGAAAGGCATGGTTGCGACTTGCGAACACGATAATTACCAATACCCAAACCGCCCATCAGACGATCACGTTGTGTAGTCTCCCAATTAATTGTGTGCATACCATCCATGCCTTGAGCACCTTCCCAGAAAGAGCATGAAAAAGAGATAAGTAATAAGTTGGCAAGCAAGAGAGAGAAGCCTGAATCAGCATATGACGAACCCCTTTAGATATATAGGCATATTTCCAATTGTGAAGCTTATGATGCATGCATTCAATAACGGGATGCCAAAAAGTAGATGTAGAGTTACCATCTAAAGGCAAGCGAAGGTAAGTAGAAGGCCGATGACCAAGCTTGCAACCAAAGGAACAAGCCAAAGAGTCCATGGTGGATTAACCTAAATTATTACCCAAAAGCTCACTCTTTGAAAAATTAATAGTCAAACCGGAAGTCGCTTCAAAGATATATATCATCTCGAGAAGAAGCTGAAGAGCAGGAGTATTTGCAAAGGAAAAGATTAAAGTATCATAAAAAATTGTTAATGGCTAAGCACAAAATAAGAGTCATCAATAGGATGAGCAACAATGAGGCCCTTGGATAAACTATGATCCATAAGACGGCTAAGACAATCAGCAACTAGAATGAATAAGAAAGGTGAAAGAGGATCACCCTGTCTAATGCTACACGGAGGGATAATCTTACCTTGAGGCCGACCATTACTAATGATTGAAAAACTTGCACTAGAGATGCACCCACGAATACAAGACCGCCAAATAGGATCAAAACCTTTGATTTGGAAGATTATATATTCAATTTTATTCTGCAACTATATTGGACTACAGCCTACTAGATCGTTGTAGAATAAATTTGGCATCTACATAGTTTAAATATTGTTGTGCTTTGTTAATCAAGTATTTGGATCTGATGATTTGTTGTTATATTTTCATTTCTACTACTTCAGAAAGATGGAAGTTGCAAATTCATATATTACTATCCATAAGTAGCATGAGAAGAAGTTTAAAGTCTTCTTTATGAATGATACACTGAAACATCCTTTGCTTCCAACTAGAATGAATGTTTGTAGTTTCCATGACCCAAAATTAAGTCCTAAATTTCTATCTTTTAAGTTTAAACTTGGAAAATGTCAATCTACACATCACTTTGATGAGCATGCTCATCACCTACCAAATTATTTCTTGTTTTGATTAAAATATCAAATTGTCATTAATAACACACTGGTCACTTGTGTTCATCAGCATGGAATGATGATAAATGACAAGTGGATTTTACGGATGATGACTTCTATTAAGTAAGCTTCCATGCTCCAAAAGGTGGTTTGTGAAGAAGAGCTTCCGATCAATGGCAATGGATTATTGTTATTTGAAGACCGATTTGATTTTGATTTTTTAGTGTTGATTCTCTATTTCGTACTCATTGATAGTTAACATCTGTATGTGATCGTGTTGATTTTTTCATTGAGAAATTGACGACTTTGTTTTCTTGCTGGAAAAGTGGGTTTGTATTTTGTAGTAGCTTCGATAAAAGTGACTTGAAATCTGTGCTTGTGATGTACGGTTGAATACGAGTGTCTTGAATCTTGGTTGATTCAAAATATTAAAGTGAAGATTTTCAACCAGAAAGCACAGATTTTTCTATCGCATAACACTAGCCATCTTTGTTTTTCAGTTGGGGACTCGAGTCCATTGTGAAACTTGCCTTTACAATGTTGAGTTTTTGCTGTCTAACCGCCTCTTGTTTTGTTT

mRNA sequence

CAACTATCGTAGAAACCCCTCAGACCCAAAGTAGGGTTTTAGCTTTAACCCTCAGCAAGCCAGCCATGAAGCAAGAGTCAATTCCCTCTTGTTCATATTCCGAAACCAAGAAGAACAACCTTCTGAATCTACCATTTCTTCTCATAATCAATGGCCTCAATTGGTGCTCGGTCTGCTTTCCGCTCATTCTCCGGTTCGGCACGCCGTGCTGCTGCTCACATCGGTTCTCAACCCAAGGCCTCATCATCCTCTCCCTTTCGCATGGCAACTAACAAACCCCTCTCTCATCGTACTTTCAGGTGTGCGCCTGAGATGAGCTTCTGTTTGGAGTCAATGATGCCATTTCACTCTGTGTCGTCCTCAGCTTTGATGACTTCAATGCTCTCTATCTCGCGCCACAGCTGCGGTTGGCTCCCCGAAGCATGGAATGATGATAAATGACAAGTGGATTTTACGGATGATGACTTCTATTAAGTAAGCTTCCATGCTCCAAAAGGTGGTTTGTGAAGAAGAGCTTCCGATCAATGGCAATGGATTATTGTTATTTGAAGACCGATTTGATTTTGATTTTTTAGTGTTGATTCTCTATTTCGTACTCATTGATAGTTAACATCTGTATGTGATCGTGTTGATTTTTTCATTGAGAAATTGACGACTTTGTTTTCTTGCTGGAAAAGTGGGTTTGTATTTTGTAGTAGCTTCGATAAAAGTGACTTGAAATCTGTGCTTGTGATGTACGGTTGAATACGAGTGTCTTGAATCTTGGTTGATTCAAAATATTAAAGTGAAGATTTTCAACCAGAAAGCACAGATTTTTCTATCGCATAACACTAGCCATCTTTGTTTTTCAGTTGGGGACTCGAGTCCATTGTGAAACTTGCCTTTACAATGTTGAGTTTTTGCTGTCTAACCGCCTCTTGTTTTGTTT

Coding sequence (CDS)

ATGGCCTCAATTGGTGCTCGGTCTGCTTTCCGCTCATTCTCCGGTTCGGCACGCCGTGCTGCTGCTCACATCGGTTCTCAACCCAAGGCCTCATCATCCTCTCCCTTTCGCATGGCAACTAACAAACCCCTCTCTCATCGTACTTTCAGGTGTGCGCCTGAGATGAGCTTCTGTTTGGAGTCAATGATGCCATTTCACTCTGTGTCGTCCTCAGCTTTGATGACTTCAATGCTCTCTATCTCGCGCCACAGCTGCGGTTGGCTCCCCGAAGCATGGAATGATGATAAATGA

Protein sequence

MASIGARSAFRSFSGSARRAAAHIGSQPKASSSSPFRMATNKPLSHRTFRCAPEMSFCLESMMPFHSVSSSALMTSMLSISRHSCGWLPEAWNDDK*
Homology
[Close]
BLAST of CSPI02G25850 vs. ExPASy Swiss-Prot
Match: Q93ZJ3 (Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=NFD6 PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.5e-09
Identity = 42/93 (45.16%), Postives = 56/93 (60.22%), Query Frame = 0 

Query: 5  GARSAFRSFSGSARRAAAHIGSQPKASSSSP--FRMATNKPLSHRTFRCAPEMSFCLESM 64
          GARS  R  + S+R AAA  G     + S+P  FR    +       R   E+SFC+ES+
Sbjct: 9  GARSMLR--AASSRSAAASTGRFASQAKSAPPLFRATARRSPLLSPLRNPVELSFCVESL 68

Query: 65 MPFHSVSSSALMTSMLSISRHSCGWLPEAWNDD 96
          +P+HS ++SALMTS LSIS  + GWL +A NDD
Sbjct: 69 LPYHSATASALMTSKLSISGQTYGWLSDACNDD 99

[Close]
BLAST of CSPI02G25850 vs. ExPASy TrEMBL
Match: A0A0A0LMP1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G408410 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.8e-42
Identity = 94/95 (98.95%), Postives = 94/95 (98.95%), Query Frame = 0 

Query: 1  MASIGARSAFRSFSGSARRAAAHIGSQPKASSSSPFRMATNKPLSHRTFRCAPEMSFCLE 60
          MASIGARSAFRSFSGSARRAAAHIGSQPKASSSSPFRMATNKPLSHRTFRCAPEMSFCLE
Sbjct: 1  MASIGARSAFRSFSGSARRAAAHIGSQPKASSSSPFRMATNKPLSHRTFRCAPEMSFCLE 60

Query: 61 SMMPFHSVSSSALMTSMLSISRHSCGWLPEAWNDD 96
          SMMPFHSVSSSALMTSMLSISRHSCGWLPEA NDD
Sbjct: 61 SMMPFHSVSSSALMTSMLSISRHSCGWLPEACNDD 95

[Close]
BLAST of CSPI02G25850 vs. ExPASy TrEMBL
Match: A0A1S4E1L9 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496017 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.3e-40
Identity = 91/96 (94.79%), Postives = 92/96 (95.83%), Query Frame = 0 

Query: 1  MASIGARSAFRSFSGSARRAAAHIGSQPKASSSSPFRMATNKPLSHRTFRCAPEMSFCLE 60
          MASIGARSAFRSFSGSARRAAAHIGSQPK SS+SPFRMATNKPLSH TFRCAP MSFCLE
Sbjct: 1  MASIGARSAFRSFSGSARRAAAHIGSQPKPSSTSPFRMATNKPLSHPTFRCAPVMSFCLE 60

Query: 61 SMMPFHSVSSSALMTSMLSISRHSCGWLPEAWNDDK 97
          SMMPFHSVSSSALMTSMLSISRHSCGWLPEA NDDK
Sbjct: 61 SMMPFHSVSSSALMTSMLSISRHSCGWLPEACNDDK 96

[Close]
BLAST of CSPI02G25850 vs. ExPASy TrEMBL
Match: A0A0A0LN06 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G408390 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 4.9e-40
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0 

Query: 1  MASIGARSAFRSFSGSARRAAAHIGSQPKASSSSPFRMATNKPLSHRTFRCAPEMSFCLE 60
          MASIGARSAFRSFSGSARRAAAHIGSQPKASSSSPFRMATNKPLSHRTFRCAPEMSFCLE
Sbjct: 1  MASIGARSAFRSFSGSARRAAAHIGSQPKASSSSPFRMATNKPLSHRTFRCAPEMSFCLE 60

Query: 61 SMMPFHSVSSSALMTSMLSISRHSCGWLPE 91
          SMMPFHSVSSSALMTSMLSISRHSCGWLPE
Sbjct: 61 SMMPFHSVSSSALMTSMLSISRHSCGWLPE 90

[Close]
BLAST of CSPI02G25850 vs. ExPASy TrEMBL
Match: A0A1S4E0T5 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103496019 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 8.3e-40
Identity = 90/96 (93.75%), Postives = 91/96 (94.79%), Query Frame = 0 

Query: 1  MASIGARSAFRSFSGSARRAAAHIGSQPKASSSSPFRMATNKPLSHRTFRCAPEMSFCLE 60
          MASIGARSAFRSFSGSARRAAAHIGSQPK SS+SPFRMATNKPLSH TFR AP MSFCLE
Sbjct: 1  MASIGARSAFRSFSGSARRAAAHIGSQPKPSSTSPFRMATNKPLSHPTFRRAPVMSFCLE 60

Query: 61 SMMPFHSVSSSALMTSMLSISRHSCGWLPEAWNDDK 97
          SMMPFHSVSSSALMTSMLSISR SCGWLPEAWNDDK
Sbjct: 61 SMMPFHSVSSSALMTSMLSISRQSCGWLPEAWNDDK 96

[Close]
BLAST of CSPI02G25850 vs. ExPASy TrEMBL
Match: A0A0A0LT36 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G408420 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 7.0e-39
Identity = 88/90 (97.78%), Postives = 88/90 (97.78%), Query Frame = 0 

Query: 1  MASIGARSAFRSFSGSARRAAAHIGSQPKASSSSPFRMATNKPLSHRTFRCAPEMSFCLE 60
          MASIGARSAFRSFSGSARRAAAHIGSQPK S SSPFRMATNKPLSHRTFRCAPEMSFCLE
Sbjct: 1  MASIGARSAFRSFSGSARRAAAHIGSQPKPSPSSPFRMATNKPLSHRTFRCAPEMSFCLE 60

Query: 61 SMMPFHSVSSSALMTSMLSISRHSCGWLPE 91
          SMMPFHSVSSSALMTSMLSISRHSCGWLPE
Sbjct: 61 SMMPFHSVSSSALMTSMLSISRHSCGWLPE 90

[Close]
BLAST of CSPI02G25850 vs. NCBI nr
Match: XP_011649977.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X1 [Cucumis sativus])

HSP 1 Score: 188.7 bits (478), Expect = 2.3e-44
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 1  MASIGARSAFRSFSGSARRAAAHIGSQPKASSSSPFRMATNKPLSHRTFRCAPEMSFCLE 60
          MASIGARSAFRSFSGSARRAAAHIGSQPKASSSSPFRMATNKPLSHRTFRCAPEMSFCLE
Sbjct: 1  MASIGARSAFRSFSGSARRAAAHIGSQPKASSSSPFRMATNKPLSHRTFRCAPEMSFCLE 60

Query: 61 SMMPFHSVSSSALMTSMLSISRHSCGWLPEAWNDDK 97
          SMMPFHSVSSSALMTSMLSISRHSCGWLPEAWNDDK
Sbjct: 61 SMMPFHSVSSSALMTSMLSISRHSCGWLPEAWNDDK 96

[Close]
BLAST of CSPI02G25850 vs. NCBI nr
Match: XP_011649975.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X1 [Cucumis sativus])

HSP 1 Score: 181.4 bits (459), Expect = 3.7e-42
Identity = 94/95 (98.95%), Postives = 94/95 (98.95%), Query Frame = 0 

Query: 1  MASIGARSAFRSFSGSARRAAAHIGSQPKASSSSPFRMATNKPLSHRTFRCAPEMSFCLE 60
          MASIGARSAFRSFSGSARRAAAHIGSQPKASSSSPFRMATNKPLSHRTFRCAPEMSFCLE
Sbjct: 1  MASIGARSAFRSFSGSARRAAAHIGSQPKASSSSPFRMATNKPLSHRTFRCAPEMSFCLE 60

Query: 61 SMMPFHSVSSSALMTSMLSISRHSCGWLPEAWNDD 96
          SMMPFHSVSSSALMTSMLSISRHSCGWLPEA NDD
Sbjct: 61 SMMPFHSVSSSALMTSMLSISRHSCGWLPEACNDD 95

[Close]
BLAST of CSPI02G25850 vs. NCBI nr
Match: XP_011649973.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X1 [Cucumis sativus])

HSP 1 Score: 179.9 bits (455), Expect = 1.1e-41
Identity = 93/96 (96.88%), Postives = 93/96 (96.88%), Query Frame = 0 

Query: 1  MASIGARSAFRSFSGSARRAAAHIGSQPKASSSSPFRMATNKPLSHRTFRCAPEMSFCLE 60
          MASIGARSAFRSFSGSARRAAAHIGSQPK S SSPFRMATNKPLSHRTFRCAPEMSFCLE
Sbjct: 1  MASIGARSAFRSFSGSARRAAAHIGSQPKPSPSSPFRMATNKPLSHRTFRCAPEMSFCLE 60

Query: 61 SMMPFHSVSSSALMTSMLSISRHSCGWLPEAWNDDK 97
          SMMPFHSVSSSALMTSMLSISRHSCGWLPEA NDDK
Sbjct: 61 SMMPFHSVSSSALMTSMLSISRHSCGWLPEACNDDK 96

[Close]
BLAST of CSPI02G25850 vs. NCBI nr
Match: XP_016901880.1 (PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 [Cucumis melo])

HSP 1 Score: 175.3 bits (443), Expect = 2.6e-40
Identity = 91/96 (94.79%), Postives = 92/96 (95.83%), Query Frame = 0 

Query: 1  MASIGARSAFRSFSGSARRAAAHIGSQPKASSSSPFRMATNKPLSHRTFRCAPEMSFCLE 60
          MASIGARSAFRSFSGSARRAAAHIGSQPK SS+SPFRMATNKPLSH TFRCAP MSFCLE
Sbjct: 1  MASIGARSAFRSFSGSARRAAAHIGSQPKPSSTSPFRMATNKPLSHPTFRCAPVMSFCLE 60

Query: 61 SMMPFHSVSSSALMTSMLSISRHSCGWLPEAWNDDK 97
          SMMPFHSVSSSALMTSMLSISRHSCGWLPEA NDDK
Sbjct: 61 SMMPFHSVSSSALMTSMLSISRHSCGWLPEACNDDK 96

[Close]
BLAST of CSPI02G25850 vs. NCBI nr
Match: XP_011649976.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X3 [Cucumis sativus] >XP_011649978.1 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X2 [Cucumis sativus])

HSP 1 Score: 173.3 bits (438), Expect = 1.0e-39
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0 

Query: 1  MASIGARSAFRSFSGSARRAAAHIGSQPKASSSSPFRMATNKPLSHRTFRCAPEMSFCLE 60
          MASIGARSAFRSFSGSARRAAAHIGSQPKASSSSPFRMATNKPLSHRTFRCAPEMSFCLE
Sbjct: 1  MASIGARSAFRSFSGSARRAAAHIGSQPKASSSSPFRMATNKPLSHRTFRCAPEMSFCLE 60

Query: 61 SMMPFHSVSSSALMTSMLSISRHSCGWLPE 91
          SMMPFHSVSSSALMTSMLSISRHSCGWLPE
Sbjct: 61 SMMPFHSVSSSALMTSMLSISRHSCGWLPE 90

[Close]
BLAST of CSPI02G25850 vs. TAIR 10
Match: AT1G28395.4 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 68.6 bits (166), Expect = 3.2e-12
Identity = 40/93 (43.01%), Postives = 59/93 (63.44%), Query Frame = 0 

Query: 6  ARSAFRSFSGSARRAAAHIGSQPK---ASSSSPFRMATNKPLSHRTFRCAPEMSFCLESM 65
          ARS FRS +  A   A    + PK   +S+ + FRM    PL++R FR   E+S C+E+M
Sbjct: 4  ARSVFRSAASRASSTAFRFSAGPKPMPSSARTAFRMPKQSPLTNRIFRSPVELSCCVETM 63

Query: 66 MPFHSVSSSALMTSMLSISRHSCGWLPEAWNDD 96
          +P+H+ ++SAL+ SMLS+SR   GW+ +  NDD
Sbjct: 64 LPYHTATASALLNSMLSVSRR--GWIVDDCNDD 94

[Close]
BLAST of CSPI02G25850 vs. TAIR 10
Match: AT1G28395.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 64.3 bits (155), Expect = 6.1e-11
Identity = 37/94 (39.36%), Postives = 59/94 (62.77%), Query Frame = 0 

Query: 6  ARSAFRSFSGSARRAAAHIGSQPK---ASSSSPFRMATNKPLSHRTFRCAPEMSFCLESM 65
          ARS FRS +  A   A    + PK   +S+ + FRM    PL++R FR   E+S C+E+M
Sbjct: 4  ARSVFRSAASRASSTAFRFSAGPKPMPSSARTAFRMPKQSPLTNRIFRSPVELSCCVETM 63

Query: 66 MPFHSVSSSALMTSMLSISRHSCGWLPEAWNDDK 97
          +P+H+ ++SAL+ SMLS+SR   GW+ +  ++ +
Sbjct: 64 LPYHTATASALLNSMLSVSRR--GWIVDGLDETR 95

[Close]
BLAST of CSPI02G25850 vs. TAIR 10
Match: AT1G28395.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 64.3 bits (155), Expect = 6.1e-11
Identity = 37/94 (39.36%), Postives = 59/94 (62.77%), Query Frame = 0 

Query: 6  ARSAFRSFSGSARRAAAHIGSQPK---ASSSSPFRMATNKPLSHRTFRCAPEMSFCLESM 65
          ARS FRS +  A   A    + PK   +S+ + FRM    PL++R FR   E+S C+E+M
Sbjct: 4  ARSVFRSAASRASSTAFRFSAGPKPMPSSARTAFRMPKQSPLTNRIFRSPVELSCCVETM 63

Query: 66 MPFHSVSSSALMTSMLSISRHSCGWLPEAWNDDK 97
          +P+H+ ++SAL+ SMLS+SR   GW+ +  ++ +
Sbjct: 64 LPYHTATASALLNSMLSVSRR--GWIVDGLDETR 95

[Close]
BLAST of CSPI02G25850 vs. TAIR 10
Match: AT1G28395.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 64.3 bits (155), Expect = 6.1e-11
Identity = 37/94 (39.36%), Postives = 59/94 (62.77%), Query Frame = 0 

Query: 6  ARSAFRSFSGSARRAAAHIGSQPK---ASSSSPFRMATNKPLSHRTFRCAPEMSFCLESM 65
          ARS FRS +  A   A    + PK   +S+ + FRM    PL++R FR   E+S C+E+M
Sbjct: 4  ARSVFRSAASRASSTAFRFSAGPKPMPSSARTAFRMPKQSPLTNRIFRSPVELSCCVETM 63

Query: 66 MPFHSVSSSALMTSMLSISRHSCGWLPEAWNDDK 97
          +P+H+ ++SAL+ SMLS+SR   GW+ +  ++ +
Sbjct: 64 LPYHTATASALLNSMLSVSRR--GWIVDGLDETR 95

[Close]
BLAST of CSPI02G25850 vs. TAIR 10
Match: AT2G20585.1 (nuclear fusion defective 6 )

HSP 1 Score: 63.5 bits (153), Expect = 1.0e-10
Identity = 42/93 (45.16%), Postives = 56/93 (60.22%), Query Frame = 0 

Query: 5  GARSAFRSFSGSARRAAAHIGSQPKASSSSP--FRMATNKPLSHRTFRCAPEMSFCLESM 64
          GARS  R  + S+R AAA  G     + S+P  FR    +       R   E+SFC+ES+
Sbjct: 9  GARSMLR--AASSRSAAASTGRFASQAKSAPPLFRATARRSPLLSPLRNPVELSFCVESL 68

Query: 65 MPFHSVSSSALMTSMLSISRHSCGWLPEAWNDD 96
          +P+HS ++SALMTS LSIS  + GWL +A NDD
Sbjct: 69 LPYHSATASALMTSKLSISGQTYGWLSDACNDD 99

The following BLAST results are available for this feature:
BLAST of CSPI02G25850 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q93ZJ31.5e-0945.16Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial OS=Arabidopsis thaliana OX=370... [more]
BLAST of CSPI02G25850 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LMP11.8e-4298.95Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G408410 PE=4 SV=1[more]
A0A1S4E1L91.3e-4094.79protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 ... [more]
A0A0A0LN064.9e-40100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G408390 PE=4 SV=1[more]
A0A1S4E0T58.3e-4093.75protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like OS=Cucumis ... [more]
A0A0A0LT367.0e-3997.78Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G408420 PE=4 SV=1[more]
BLAST of CSPI02G25850 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011649977.12.3e-44100.00protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X1 [Cucu... [more]
XP_011649975.13.7e-4298.95protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X1 [Cucu... [more]
XP_011649973.11.1e-4196.88protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X1 [Cucu... [more]
XP_016901880.12.6e-4094.79PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like ... [more]
XP_011649976.11.0e-39100.00protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X3 [Cucu... [more]
BLAST of CSPI02G25850 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G28395.43.2e-1243.01unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G28395.26.1e-1139.36unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G28395.16.1e-1139.36unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G28395.36.1e-1139.36unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT2G20585.11.0e-1045.16nuclear fusion defective 6 [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 20..39
IPR043459NFD6/NOXY2-likePANTHERPTHR33156OS02G0230000 PROTEINcoord: 3..90
IPR033251Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrialPANTHERPTHR33156:SF48PROTEIN NUCLEAR FUSION DEFECTIVE 6, CHLOROPLASTIC/MITOCHONDRIALcoord: 3..90

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI02G25850.1CSPI02G25850.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000741 karyogamy