CSPI02G25850 (gene) Cucumber (PI 183967) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CAACTATCGTAGAAACCCCTCAGACCCAAAGTAGGGTTTTAGCTTTAACCCTCAGCAAGCCAGCCATGAAGCAAGAGTCAATTCCCTCTTGTTCATATTCCGAAACCAAGAAGAACAACCTTCTGAATCTACCATTTCTTCTCATAATCAATGGCCTCAATTGGTGCTCGGTCTGCTTTCCGCTCATTCTCCGGTTCGGCACGCCGTGCTGCTGCTCACATCGGTTCTCAACCCAAGGCCTCATCATCCTCTCCCTTTCGCATGGCAACTAACAAACCCCTCTCTCATCGTACTTTCAGGTTCGTTTCTTAATGATTTTGCATCCGTTTTAAGTGCGAAAAGTTTCTGAATCTAGAGCTCTTTGAGTTTTTTTTTATTCTCCTCAGAAGTAGAACAACGAAAACAGTGTCCAATCTTCATCTTTATTTCTCTCTTCAGTGTTTTAGTTGCGAAACGTTTCAGTAAAATAAGGTAATCTATTTTGCTTGAAGGTGTGCGCCTGAGATGAGCTTCTGTTTGGAGTCAATGATGCCATTTCACTCTGTGTCGTCCTCAGCTTTGATGACTTCAATGCTCTCTATCTCGCGCCACAGCTGCGGTTGGCTCCCCGAAGGTGCATAACTGATAATTTATTTCTTTACTTTCTTCATCTGTTATGTGCTACATCAAAAGAATTTAGATCATATCCATAATTTCAGAATGAATTCTTCCGTGGACAAGAAAGAGTTGATAATTTTCTGGAAGCTGATTTTCTATTTGCATATGGTTTTCGTTGGATGAATTTTAGCTTTATAATAATTTTCATGGATCAAGAAAAATCAAGTTTAAGTGGGAGTAATGATCAACTGTATTTTGAAATAGTGATATCTATATTTAGGTTCAGGGGTCACATTAGCCACAGTGATCTGATGTTTCTGGTGAATGAAATATCTATGCTTTATTCTATGATTGAGGTAGTTAATGTGTTTGAGTCATTAGAACCTACACCATGAAAAGCTTTCTTGTTTTGAAAATGAAACCTTTCGTTGATTGAATGGAATAGGGGCCAAAGTGCGGGCACCCAAAGGTGATTACAGGTAAAGATGCTAATGGGAGACAAGATAAGAAAGACTTAAAATGTTAAAAGGGTGTTTATTTCTACACCAATACAAAGCAAATAACCAAATCACGAAAAAGATCAAAACGAGTAGAATCATTACGAAAAAGACGCTTGTTCCAACTCTCCCAAAGAAGCCAAAAGAAAGCTTGAATGATCGCCATCCAAAGCATTTTCTTGCGACCAGTAAAAGGGTGACCCACCAACAAGCAAGATAGATTATCAAACATATTATGGGAAAGAACCACTGGCCAACCGAAAGCATCAAGAATATATCACCAAAAATAGGAAGCAAAAGTACAATGATTAAAAAGGCGGGCAGCAGATTCAGAATGAGCTTCACACATATGACACCAAGAAGGAGAGATAACCATTTATGGCATACGATCTTGAAGGCGGTCAGCAATAGCACTATGACTGAGCTCCCACAAGAAAATTTTTATTTTCTAAGGATAACAATCCAACCAAATAGCCGAATAGACATCCGAAGCAGGGCGAATATCATTTCTCGCCAAACCATCCATAAGAGATAAAACCGACAAAGAGGAAGAAGGTCCGATTATCCAAATCCAAGAATCAGCAACCTCACAAAAAAGACAGATTGTAAATTCTGTGATAAAGCCATCCTCAACAATTTTAGATTCTGTGAGATTACAGTGAATACGCAAATGCCAAGCAGCAGCATCCTCGACCCATACATCAGCCACTTTGATATCTGGAAAACGAGCCAAACGAAAGAGACGAGGGAGAACATTCGAGAGAATACCACAACTAAGCCAGGGAGCCTTCCAAACTGAGGTTGATGAATCATTGCCAAGATGATGCTGTGTGCGGCTGGCCACCAAATCAGTAGTTTGACAAAGAGTCTCCACGGAGATTTGGATGAACACCAAATAGGCGAAGGCCAAATACAGTTAAAAAGAATAGTATTGGGCCACAATGAGTTGTCTCCACAAGGCATTAGATTCCTGCAAAAACCACCAGATCCATGTGGCAAGAAAGGCATGGTTGCGACTTGCGAACACGATAATTACCAATACCCAAACCGCCCATCAGACGATCACGTTGTGTAGTCTCCCAATTAATTGTGTGCATACCATCCATGCCTTGAGCACCTTCCCAGAAAGAGCATGAAAAAGAGATAAGTAATAAGTTGGCAAGCAAGAGAGAGAAGCCTGAATCAGCATATGACGAACCCCTTTAGATATATAGGCATATTTCCAATTGTGAAGCTTATGATGCATGCATTCAATAACGGGATGCCAAAAAGTAGATGTAGAGTTACCATCTAAAGGCAAGCGAAGGTAAGTAGAAGGCCGATGACCAAGCTTGCAACCAAAGGAACAAGCCAAAGAGTCCATGGTGGATTAACCTAAATTATTACCCAAAAGCTCACTCTTTGAAAAATTAATAGTCAAACCGGAAGTCGCTTCAAAGATATATATCATCTCGAGAAGAAGCTGAAGAGCAGGAGTATTTGCAAAGGAAAAGATTAAAGTATCATAAAAAATTGTTAATGGCTAAGCACAAAATAAGAGTCATCAATAGGATGAGCAACAATGAGGCCCTTGGATAAACTATGATCCATAAGACGGCTAAGACAATCAGCAACTAGAATGAATAAGAAAGGTGAAAGAGGATCACCCTGTCTAATGCTACACGGAGGGATAATCTTACCTTGAGGCCGACCATTACTAATGATTGAAAAACTTGCACTAGAGATGCACCCACGAATACAAGACCGCCAAATAGGATCAAAACCTTTGATTTGGAAGATTATATATTCAATTTTATTCTGCAACTATATTGGACTACAGCCTACTAGATCGTTGTAGAATAAATTTGGCATCTACATAGTTTAAATATTGTTGTGCTTTGTTAATCAAGTATTTGGATCTGATGATTTGTTGTTATATTTTCATTTCTACTACTTCAGAAAGATGGAAGTTGCAAATTCATATATTACTATCCATAAGTAGCATGAGAAGAAGTTTAAAGTCTTCTTTATGAATGATACACTGAAACATCCTTTGCTTCCAACTAGAATGAATGTTTGTAGTTTCCATGACCCAAAATTAAGTCCTAAATTTCTATCTTTTAAGTTTAAACTTGGAAAATGTCAATCTACACATCACTTTGATGAGCATGCTCATCACCTACCAAATTATTTCTTGTTTTGATTAAAATATCAAATTGTCATTAATAACACACTGGTCACTTGTGTTCATCAGCATGGAATGATGATAAATGACAAGTGGATTTTACGGATGATGACTTCTATTAAGTAAGCTTCCATGCTCCAAAAGGTGGTTTGTGAAGAAGAGCTTCCGATCAATGGCAATGGATTATTGTTATTTGAAGACCGATTTGATTTTGATTTTTTAGTGTTGATTCTCTATTTCGTACTCATTGATAGTTAACATCTGTATGTGATCGTGTTGATTTTTTCATTGAGAAATTGACGACTTTGTTTTCTTGCTGGAAAAGTGGGTTTGTATTTTGTAGTAGCTTCGATAAAAGTGACTTGAAATCTGTGCTTGTGATGTACGGTTGAATACGAGTGTCTTGAATCTTGGTTGATTCAAAATATTAAAGTGAAGATTTTCAACCAGAAAGCACAGATTTTTCTATCGCATAACACTAGCCATCTTTGTTTTTCAGTTGGGGACTCGAGTCCATTGTGAAACTTGCCTTTACAATGTTGAGTTTTTGCTGTCTAACCGCCTCTTGTTTTGTTT CAACTATCGTAGAAACCCCTCAGACCCAAAGTAGGGTTTTAGCTTTAACCCTCAGCAAGCCAGCCATGAAGCAAGAGTCAATTCCCTCTTGTTCATATTCCGAAACCAAGAAGAACAACCTTCTGAATCTACCATTTCTTCTCATAATCAATGGCCTCAATTGGTGCTCGGTCTGCTTTCCGCTCATTCTCCGGTTCGGCACGCCGTGCTGCTGCTCACATCGGTTCTCAACCCAAGGCCTCATCATCCTCTCCCTTTCGCATGGCAACTAACAAACCCCTCTCTCATCGTACTTTCAGGTGTGCGCCTGAGATGAGCTTCTGTTTGGAGTCAATGATGCCATTTCACTCTGTGTCGTCCTCAGCTTTGATGACTTCAATGCTCTCTATCTCGCGCCACAGCTGCGGTTGGCTCCCCGAAGCATGGAATGATGATAAATGACAAGTGGATTTTACGGATGATGACTTCTATTAAGTAAGCTTCCATGCTCCAAAAGGTGGTTTGTGAAGAAGAGCTTCCGATCAATGGCAATGGATTATTGTTATTTGAAGACCGATTTGATTTTGATTTTTTAGTGTTGATTCTCTATTTCGTACTCATTGATAGTTAACATCTGTATGTGATCGTGTTGATTTTTTCATTGAGAAATTGACGACTTTGTTTTCTTGCTGGAAAAGTGGGTTTGTATTTTGTAGTAGCTTCGATAAAAGTGACTTGAAATCTGTGCTTGTGATGTACGGTTGAATACGAGTGTCTTGAATCTTGGTTGATTCAAAATATTAAAGTGAAGATTTTCAACCAGAAAGCACAGATTTTTCTATCGCATAACACTAGCCATCTTTGTTTTTCAGTTGGGGACTCGAGTCCATTGTGAAACTTGCCTTTACAATGTTGAGTTTTTGCTGTCTAACCGCCTCTTGTTTTGTTT ATGGCCTCAATTGGTGCTCGGTCTGCTTTCCGCTCATTCTCCGGTTCGGCACGCCGTGCTGCTGCTCACATCGGTTCTCAACCCAAGGCCTCATCATCCTCTCCCTTTCGCATGGCAACTAACAAACCCCTCTCTCATCGTACTTTCAGGTGTGCGCCTGAGATGAGCTTCTGTTTGGAGTCAATGATGCCATTTCACTCTGTGTCGTCCTCAGCTTTGATGACTTCAATGCTCTCTATCTCGCGCCACAGCTGCGGTTGGCTCCCCGAAGCATGGAATGATGATAAATGA MASIGARSAFRSFSGSARRAAAHIGSQPKASSSSPFRMATNKPLSHRTFRCAPEMSFCLESMMPFHSVSSSALMTSMLSISRHSCGWLPEAWNDDK* Homology
BLAST of CSPI02G25850 vs. ExPASy Swiss-Prot
Match: Q93ZJ3 (Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=NFD6 PE=3 SV=1) HSP 1 Score: 63.5 bits (153), Expect = 1.5e-09 Identity = 42/93 (45.16%), Postives = 56/93 (60.22%), Query Frame = 0
BLAST of CSPI02G25850 vs. ExPASy TrEMBL
Match: A0A0A0LMP1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G408410 PE=4 SV=1) HSP 1 Score: 181.4 bits (459), Expect = 1.8e-42 Identity = 94/95 (98.95%), Postives = 94/95 (98.95%), Query Frame = 0
BLAST of CSPI02G25850 vs. ExPASy TrEMBL
Match: A0A1S4E1L9 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496017 PE=4 SV=1) HSP 1 Score: 175.3 bits (443), Expect = 1.3e-40 Identity = 91/96 (94.79%), Postives = 92/96 (95.83%), Query Frame = 0
BLAST of CSPI02G25850 vs. ExPASy TrEMBL
Match: A0A0A0LN06 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G408390 PE=4 SV=1) HSP 1 Score: 173.3 bits (438), Expect = 4.9e-40 Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0
BLAST of CSPI02G25850 vs. ExPASy TrEMBL
Match: A0A1S4E0T5 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103496019 PE=4 SV=1) HSP 1 Score: 172.6 bits (436), Expect = 8.3e-40 Identity = 90/96 (93.75%), Postives = 91/96 (94.79%), Query Frame = 0
BLAST of CSPI02G25850 vs. ExPASy TrEMBL
Match: A0A0A0LT36 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G408420 PE=4 SV=1) HSP 1 Score: 169.5 bits (428), Expect = 7.0e-39 Identity = 88/90 (97.78%), Postives = 88/90 (97.78%), Query Frame = 0
BLAST of CSPI02G25850 vs. NCBI nr
Match: XP_011649977.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X1 [Cucumis sativus]) HSP 1 Score: 188.7 bits (478), Expect = 2.3e-44 Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0
BLAST of CSPI02G25850 vs. NCBI nr
Match: XP_011649975.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X1 [Cucumis sativus]) HSP 1 Score: 181.4 bits (459), Expect = 3.7e-42 Identity = 94/95 (98.95%), Postives = 94/95 (98.95%), Query Frame = 0
BLAST of CSPI02G25850 vs. NCBI nr
Match: XP_011649973.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X1 [Cucumis sativus]) HSP 1 Score: 179.9 bits (455), Expect = 1.1e-41 Identity = 93/96 (96.88%), Postives = 93/96 (96.88%), Query Frame = 0
BLAST of CSPI02G25850 vs. NCBI nr
Match: XP_016901880.1 (PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 [Cucumis melo]) HSP 1 Score: 175.3 bits (443), Expect = 2.6e-40 Identity = 91/96 (94.79%), Postives = 92/96 (95.83%), Query Frame = 0
BLAST of CSPI02G25850 vs. NCBI nr
Match: XP_011649976.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X3 [Cucumis sativus] >XP_011649978.1 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X2 [Cucumis sativus]) HSP 1 Score: 173.3 bits (438), Expect = 1.0e-39 Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0
BLAST of CSPI02G25850 vs. TAIR 10
Match: AT1G28395.4 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 68.6 bits (166), Expect = 3.2e-12 Identity = 40/93 (43.01%), Postives = 59/93 (63.44%), Query Frame = 0
BLAST of CSPI02G25850 vs. TAIR 10
Match: AT1G28395.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 64.3 bits (155), Expect = 6.1e-11 Identity = 37/94 (39.36%), Postives = 59/94 (62.77%), Query Frame = 0
BLAST of CSPI02G25850 vs. TAIR 10
Match: AT1G28395.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 64.3 bits (155), Expect = 6.1e-11 Identity = 37/94 (39.36%), Postives = 59/94 (62.77%), Query Frame = 0
BLAST of CSPI02G25850 vs. TAIR 10
Match: AT1G28395.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 64.3 bits (155), Expect = 6.1e-11 Identity = 37/94 (39.36%), Postives = 59/94 (62.77%), Query Frame = 0
BLAST of CSPI02G25850 vs. TAIR 10
Match: AT2G20585.1 (nuclear fusion defective 6 ) HSP 1 Score: 63.5 bits (153), Expect = 1.0e-10 Identity = 42/93 (45.16%), Postives = 56/93 (60.22%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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