Bhi12G002116 (gene) Wax gourd (B227) v1

Overview
NameBhi12G002116
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Locationchr12: 75142040 .. 75142225 (-)
RNA-Seq ExpressionBhi12G002116
SyntenyBhi12G002116
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCGACGGAGGTTCAACTACATATCTGACATCCAGAATACTCCAGGGATCAGTCTTTTCTCGGATGGGGACATCGAAAAAGCTTTTCTTGACTTCTTTACTGATGTTTATAGGGGCTCATCAGAATGTGATTGGATGGTGGATAATCTTGATTGGCGGCCCATTGATTTTGCACAAGCCTGA

mRNA sequence

ATGGCTCGACGGAGGTTCAACTACATATCTGACATCCAGAATACTCCAGGGATCAGTCTTTTCTCGGATGGGGACATCGAAAAAGCTTTTCTTGACTTCTTTACTGATGTTTATAGGGGCTCATCAGAATGTGATTGGATGGTGGATAATCTTGATTGGCGGCCCATTGATTTTGCACAAGCCTGA

Coding sequence (CDS)

ATGGCTCGACGGAGGTTCAACTACATATCTGACATCCAGAATACTCCAGGGATCAGTCTTTTCTCGGATGGGGACATCGAAAAAGCTTTTCTTGACTTCTTTACTGATGTTTATAGGGGCTCATCAGAATGTGATTGGATGGTGGATAATCTTGATTGGCGGCCCATTGATTTTGCACAAGCCTGA

Protein sequence

MARRRFNYISDIQNTPGISLFSDGDIEKAFLDFFTDVYRGSSECDWMVDNLDWRPIDFAQA
Homology
BLAST of Bhi12G002116 vs. NCBI nr
Match: KAA0055398.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYJ99330.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 72.4 bits (176), Expect = 1.5e-09
Identity = 29/55 (52.73%), Postives = 40/55 (72.73%), Query Frame = 0

Query: 2   ARRRFNYISDIQNTPGISLFSDGDIEKAFLDFFTDVYRGSSECDWMVDNLDWRPI 57
           ARR+ N+IS+IQNT G++ ++D  IEK F D+F D+Y G S  +WM DNLDW  +
Sbjct: 73  ARRQINFISEIQNTQGVNFYTDPLIEKDFKDYFNDIYIGESNVEWMFDNLDWESL 127

BLAST of Bhi12G002116 vs. NCBI nr
Match: TYK10921.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 61.2 bits (147), Expect = 3.5e-06
Identity = 28/56 (50.00%), Postives = 41/56 (73.21%), Query Frame = 0

Query: 2  ARRRFNYISDIQNTPGISLFSDGDIEKAFLDFFTDVYRG-SSECDWMVDNLDWRPI 57
          AR+R ++IS+I +  G S  ++ +IEKAFLD F ++Y G SS+  W++DNLDW PI
Sbjct: 13 ARQRRSFISNIISNSGDSCSTNENIEKAFLDHFEEIYNGSSSDSPWLIDNLDWSPI 68

BLAST of Bhi12G002116 vs. NCBI nr
Match: KAA0067709.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 60.8 bits (146), Expect = 4.6e-06
Identity = 28/61 (45.90%), Postives = 41/61 (67.21%), Query Frame = 0

Query: 2   ARRRFNYISDIQNTPGISLFSDGDIEKAFLDFFTDVYRGSSE-CDWMVDNLDWRPIDFAQ 61
           AR+R + IS+I    GI   ++ +I KAFLD F D+Y G+ E   W+++NL+W PI F+Q
Sbjct: 264 ARQRRSIISNINLVDGIPCTTNDNIVKAFLDHFEDIYNGNGEDSPWLIENLNWSPIPFSQ 323

BLAST of Bhi12G002116 vs. NCBI nr
Match: KAA0041367.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 60.5 bits (145), Expect = 6.0e-06
Identity = 27/61 (44.26%), Postives = 39/61 (63.93%), Query Frame = 0

Query: 2  ARRRFNYISDIQNTPGISLFSDGDIEKAFLDFFTDVYR-GSSECDWMVDNLDWRPIDFAQ 61
          AR+R + IS+I++  G+   ++  I KAFLD F D+Y+ G  E  W++DNL W PI   Q
Sbjct: 35 ARQRRSIISNIKSVDGVPCSTNESIAKAFLDHFEDIYKGGGEESPWLIDNLSWSPISTTQ 94

BLAST of Bhi12G002116 vs. NCBI nr
Match: KAA0040038.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 60.1 bits (144), Expect = 7.8e-06
Identity = 27/61 (44.26%), Postives = 38/61 (62.30%), Query Frame = 0

Query: 2   ARRRFNYISDIQNTPGISLFSDGDIEKAFLDFFTDVYR-GSSECDWMVDNLDWRPIDFAQ 61
           AR+R + IS+I +  G+   ++  I KAFLD F D+Y+ G  E  W++DNL W PI   Q
Sbjct: 301 ARQRRSIISNINSVDGVPCSTNESIAKAFLDHFEDIYKGGGEESPWLIDNLSWSPISTTQ 360

BLAST of Bhi12G002116 vs. ExPASy TrEMBL
Match: A0A5D3BHR2 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005450 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 7.4e-10
Identity = 29/55 (52.73%), Postives = 40/55 (72.73%), Query Frame = 0

Query: 2   ARRRFNYISDIQNTPGISLFSDGDIEKAFLDFFTDVYRGSSECDWMVDNLDWRPI 57
           ARR+ N+IS+IQNT G++ ++D  IEK F D+F D+Y G S  +WM DNLDW  +
Sbjct: 73  ARRQINFISEIQNTQGVNFYTDPLIEKDFKDYFNDIYIGESNVEWMFDNLDWESL 127

BLAST of Bhi12G002116 vs. ExPASy TrEMBL
Match: A0A5D3CGJ3 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold231G001050 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.7e-06
Identity = 28/56 (50.00%), Postives = 41/56 (73.21%), Query Frame = 0

Query: 2  ARRRFNYISDIQNTPGISLFSDGDIEKAFLDFFTDVYRG-SSECDWMVDNLDWRPI 57
          AR+R ++IS+I +  G S  ++ +IEKAFLD F ++Y G SS+  W++DNLDW PI
Sbjct: 13 ARQRRSFISNIISNSGDSCSTNENIEKAFLDHFEEIYNGSSSDSPWLIDNLDWSPI 68

BLAST of Bhi12G002116 vs. ExPASy TrEMBL
Match: A0A5A7VRD2 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold352G00150 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.2e-06
Identity = 28/61 (45.90%), Postives = 41/61 (67.21%), Query Frame = 0

Query: 2   ARRRFNYISDIQNTPGISLFSDGDIEKAFLDFFTDVYRGSSE-CDWMVDNLDWRPIDFAQ 61
           AR+R + IS+I    GI   ++ +I KAFLD F D+Y G+ E   W+++NL+W PI F+Q
Sbjct: 264 ARQRRSIISNINLVDGIPCTTNDNIVKAFLDHFEDIYNGNGEDSPWLIENLNWSPIPFSQ 323

BLAST of Bhi12G002116 vs. ExPASy TrEMBL
Match: A0A5A7TI93 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00120 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.9e-06
Identity = 27/61 (44.26%), Postives = 39/61 (63.93%), Query Frame = 0

Query: 2  ARRRFNYISDIQNTPGISLFSDGDIEKAFLDFFTDVYR-GSSECDWMVDNLDWRPIDFAQ 61
          AR+R + IS+I++  G+   ++  I KAFLD F D+Y+ G  E  W++DNL W PI   Q
Sbjct: 35 ARQRRSIISNIKSVDGVPCSTNESIAKAFLDHFEDIYKGGGEESPWLIDNLSWSPISTTQ 94

BLAST of Bhi12G002116 vs. ExPASy TrEMBL
Match: A0A5D3DLM2 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00780 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.8e-06
Identity = 27/61 (44.26%), Postives = 38/61 (62.30%), Query Frame = 0

Query: 2   ARRRFNYISDIQNTPGISLFSDGDIEKAFLDFFTDVYR-GSSECDWMVDNLDWRPIDFAQ 61
           AR+R + IS+I +  G+   ++  I KAFLD F D+Y+ G  E  W++DNL W PI   Q
Sbjct: 301 ARQRRSIISNINSVDGVPCSTNESIAKAFLDHFEDIYKGGGEESPWLIDNLSWSPISTTQ 360

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAA0055398.11.5e-0952.73LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYJ993... [more]
TYK10921.13.5e-0650.00LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
KAA0067709.14.6e-0645.90LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
KAA0041367.16.0e-0644.26LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
KAA0040038.17.8e-0644.26LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
A0A5D3BHR27.4e-1052.73LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5D3CGJ31.7e-0650.00LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7VRD22.2e-0645.90LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7TI932.9e-0644.26LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5D3DLM23.8e-0644.26LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi12M002116Bhi12M002116mRNA