Bhi01G002244 (gene) Wax gourd (B227) v1

Overview


Name	Bhi01G002244
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Gag/pol protein
Location	chr1: 71363248 .. 71363686 (+)
RNA-Seq Expression	Bhi01G002244
Synteny	Bhi01G002244

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCCTGCACTTTGTTAGCAATGTGATTCTTAACAAAGTGAAATACAACCTTACAACTCTCTTCAACGAGTTGCAGACATACCAATCTTTACTGAAAAGTAAGGAGAGACAGAAGGGTAAGGCAAATGTTGCTTCATCCTCCAGGACGTTCCATAAAGGTTCGACCTTAGGAATGAAGTCTGCACCTTCTGCTTCTAACTCTAAAAAGGGGAAAAAGAAGAAGGGTGGTAAGGGAAAAGGGAAGGCACTTGCTAACCCACCGTCTGTCGCCCCAAGGAGGTGTCCACAAATTGATAAGGGAAAGTGTTTCCACTACAACCAAGATGGACACTGGAAGAGGAACTGTCCTTGGTATCTGAAAGAGAAGAAAGCAGCCAAGGCTATGACCAAGGCGGATAAAGATTTACTTATGCTTGAAACTTGTTTGGTGGAGAATGAT

mRNA sequence

CTTCCTGCACTTTGTTAGCAATGTGATTCTTAACAAAGTGAAATACAACCTTACAACTCTCTTCAACGAGTTGCAGACATACCAATCTTTACTGAAAAGTAAGGAGAGACAGAAGGGTAAGGCAAATGTTGCTTCATCCTCCAGGACGTTCCATAAAGGTTCGACCTTAGGAATGAAGTCTGCACCTTCTGCTTCTAACTCTAAAAAGGGGAAAAAGAAGAAGGGTGGTAAGGGAAAAGGGAAGGCACTTGCTAACCCACCGTCTGTCGCCCCAAGGAGGTGTCCACAAATTGATAAGGGAAAGTGTTTCCACTACAACCAAGATGGACACTGGAAGAGGAACTGTCCTTGGTATCTGAAAGAGAAGAAAGCAGCCAAGGCTATGACCAAGGCGGATAAAGATTTACTTATGCTTGAAACTTGTTTGGTGGAGAATGAT

Coding sequence (CDS)

CTTCCTGCACTTTGTTAGCAATGTGATTCTTAACAAAGTGAAATACAACCTTACAACTCTCTTCAACGAGTTGCAGACATACCAATCTTTACTGAAAAGTAAGGAGAGACAGAAGGGTAAGGCAAATGTTGCTTCATCCTCCAGGACGTTCCATAAAGGTTCGACCTTAGGAATGAAGTCTGCACCTTCTGCTTCTAACTCTAAAAAGGGGAAAAAGAAGAAGGGTGGTAAGGGAAAAGGGAAGGCACTTGCTAACCCACCGTCTGTCGCCCCAAGGAGGTGTCCACAAATTGATAAGGGAAAGTGTTTCCACTACAACCAAGATGGACACTGGAAGAGGAACTGTCCTTGGTATCTGAAAGAGAAGAAAGCAGCCAAGGCTATGACCAAGGCGGATAAAGATTTACTTATGCTTGAAACTTGTTTGGTGGAGAATGAT

Protein sequence

FLHFVSNVILNKVKYNLTTLFNELQTYQSLLKSKERQKGKANVASSSRTFHKGSTLGMKSAPSASNSKKGKKKKGGKGKGKALANPPSVAPRRCPQIDKGKCFHYNQDGHWKRNCPWYLKEKKAAKAMTKADKDLLMLETCLVEND

Homology

[Close]

BLAST of Bhi01G002244 vs. NCBI nr
Match: KAA0035452.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 149.8 bits (377), Expect = 1.8e-32
Identity = 86/146 (58.90%), Postives = 105/146 (71.92%), Query Frame = 0


Query: 1   FLHFVSNVILNKVKYNLTTLFNELQTYQSLLKSKERQKGKANVASSSRTFHKGSTLGMKS 60
           FLHF SN ++NK+ Y LTTL NELQT++SL+K K  QKG+ANVA+ +R FH+GST G KS
Sbjct: 79  FLHFRSNAVMNKIAYTLTTLLNELQTFESLMKIK-GQKGEANVATFTRKFHRGSTSGTKS 138

Query: 61  APSASNSKKGKKKKGGKGKGKALANPPSVAPRRCPQIDKGKCFHYNQDGHWKRNCPWYLK 120
            PS+S +KK KKKKGG+G     AN  +    +  +  KG CFH NQ+GHWKRNCP YL 
Sbjct: 139 MPSSSGNKKWKKKKGGQGN---KANLAAAKTTKKAKAAKGICFHCNQEGHWKRNCPKYLA 198

Query: 121 EKKAAKAMTKADKDLLMLETCLVEND 147
           EKK AK   +   DLL+LETCLVEND
Sbjct: 199 EKKKAK---QGKYDLLVLETCLVEND 217

[Close]

BLAST of Bhi01G002244 vs. NCBI nr
Match: KAA0044955.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 149.1 bits (375), Expect = 3.1e-32
Identity = 86/146 (58.90%), Postives = 105/146 (71.92%), Query Frame = 0


Query: 1   FLHFVSNVILNKVKYNLTTLFNELQTYQSLLKSKERQKGKANVASSSRTFHKGSTLGMKS 60
           FL F SN ++NK+ Y LTTL NELQT++SL+K K  QKG+ANVA+S+R FH+GST G KS
Sbjct: 166 FLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIK-GQKGEANVATSTRKFHRGSTSGTKS 225

Query: 61  APSASNSKKGKKKKGGKGKGKALANPPSVAPRRCPQIDKGKCFHYNQDGHWKRNCPWYLK 120
            PS+S +KK KKKKGG+G     AN  +    +  +  KG CFH NQ+GHWKRNCP YL 
Sbjct: 226 MPSSSGNKKWKKKKGGQGN---KANLAAAKTTKKAKAAKGICFHCNQEGHWKRNCPKYLA 285

Query: 121 EKKAAKAMTKADKDLLMLETCLVEND 147
           EKK AK   +   DLL+LETCLVEND
Sbjct: 286 EKKKAK---QGKYDLLVLETCLVEND 304

[Close]

BLAST of Bhi01G002244 vs. NCBI nr
Match: KAA0048404.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 149.1 bits (375), Expect = 3.1e-32
Identity = 86/146 (58.90%), Postives = 105/146 (71.92%), Query Frame = 0


Query: 1   FLHFVSNVILNKVKYNLTTLFNELQTYQSLLKSKERQKGKANVASSSRTFHKGSTLGMKS 60
           FL F SN ++NK+ Y LTTL NELQT++SL+K K  QKG+ANVA+S+R FH+GST G KS
Sbjct: 165 FLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIK-GQKGEANVATSTRKFHRGSTSGTKS 224

Query: 61  APSASNSKKGKKKKGGKGKGKALANPPSVAPRRCPQIDKGKCFHYNQDGHWKRNCPWYLK 120
            PS+S +KK KKKKGG+G     AN  +    +  +  KG CFH NQ+GHWKRNCP YL 
Sbjct: 225 MPSSSGNKKWKKKKGGQGN---KANLAAAKTTKKAKAAKGICFHCNQEGHWKRNCPKYLA 284

Query: 121 EKKAAKAMTKADKDLLMLETCLVEND 147
           EKK AK   +   DLL+LETCLVEND
Sbjct: 285 EKKKAK---QGKYDLLVLETCLVEND 303

[Close]

BLAST of Bhi01G002244 vs. NCBI nr
Match: TYK14550.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 149.1 bits (375), Expect = 3.1e-32
Identity = 86/146 (58.90%), Postives = 105/146 (71.92%), Query Frame = 0


Query: 1   FLHFVSNVILNKVKYNLTTLFNELQTYQSLLKSKERQKGKANVASSSRTFHKGSTLGMKS 60
           FL F SN ++NK+ Y LTTL NELQT++SL+K K  QKG+ANVA+S+R FH+GST G KS
Sbjct: 166 FLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIK-GQKGEANVATSTRKFHRGSTSGTKS 225

Query: 61  APSASNSKKGKKKKGGKGKGKALANPPSVAPRRCPQIDKGKCFHYNQDGHWKRNCPWYLK 120
            PS+S +KK KKKKGG+G     AN  +    +  +  KG CFH NQ+GHWKRNCP YL 
Sbjct: 226 MPSSSGNKKWKKKKGGQGN---KANLAAAKTTKKTKAAKGICFHCNQEGHWKRNCPKYLA 285

Query: 121 EKKAAKAMTKADKDLLMLETCLVEND 147
           EKK AK   +   DLL+LETCLVEND
Sbjct: 286 EKKKAK---QGKYDLLVLETCLVEND 304

[Close]

BLAST of Bhi01G002244 vs. NCBI nr
Match: KAA0054490.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 149.1 bits (375), Expect = 3.1e-32
Identity = 86/146 (58.90%), Postives = 105/146 (71.92%), Query Frame = 0


Query: 1   FLHFVSNVILNKVKYNLTTLFNELQTYQSLLKSKERQKGKANVASSSRTFHKGSTLGMKS 60
           FL F SN ++NK+ Y LTTL NELQT++SL+K K  QKG+ANVA+S+R FH+GST G KS
Sbjct: 166 FLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIK-GQKGEANVATSTRKFHRGSTSGTKS 225

Query: 61  APSASNSKKGKKKKGGKGKGKALANPPSVAPRRCPQIDKGKCFHYNQDGHWKRNCPWYLK 120
            PS+S +KK KKKKGG+G     AN  +    +  +  KG CFH NQ+GHWKRNCP YL 
Sbjct: 226 MPSSSGNKKWKKKKGGQGN---KANLAAAKTTKKAKAAKGICFHCNQEGHWKRNCPKYLA 285

Query: 121 EKKAAKAMTKADKDLLMLETCLVEND 147
           EKK AK   +   DLL+LETCLVEND
Sbjct: 286 EKKKAK---QGKYDLLVLETCLVEND 304

[Close]

BLAST of Bhi01G002244 vs. ExPASy TrEMBL
Match: A0A5A7SW12 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G00790 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 8.7e-33
Identity = 86/146 (58.90%), Postives = 105/146 (71.92%), Query Frame = 0


Query: 1   FLHFVSNVILNKVKYNLTTLFNELQTYQSLLKSKERQKGKANVASSSRTFHKGSTLGMKS 60
           FLHF SN ++NK+ Y LTTL NELQT++SL+K K  QKG+ANVA+ +R FH+GST G KS
Sbjct: 79  FLHFRSNAVMNKIAYTLTTLLNELQTFESLMKIK-GQKGEANVATFTRKFHRGSTSGTKS 138

Query: 61  APSASNSKKGKKKKGGKGKGKALANPPSVAPRRCPQIDKGKCFHYNQDGHWKRNCPWYLK 120
            PS+S +KK KKKKGG+G     AN  +    +  +  KG CFH NQ+GHWKRNCP YL 
Sbjct: 139 MPSSSGNKKWKKKKGGQGN---KANLAAAKTTKKAKAAKGICFHCNQEGHWKRNCPKYLA 198

Query: 121 EKKAAKAMTKADKDLLMLETCLVEND 147
           EKK AK   +   DLL+LETCLVEND
Sbjct: 199 EKKKAK---QGKYDLLVLETCLVEND 217

[Close]

BLAST of Bhi01G002244 vs. ExPASy TrEMBL
Match: A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.5e-32
Identity = 86/146 (58.90%), Postives = 105/146 (71.92%), Query Frame = 0


Query: 1   FLHFVSNVILNKVKYNLTTLFNELQTYQSLLKSKERQKGKANVASSSRTFHKGSTLGMKS 60
           FL F SN ++NK+ Y LTTL NELQT++SL+K K  QKG+ANVA+S+R FH+GST G KS
Sbjct: 166 FLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIK-GQKGEANVATSTRKFHRGSTSGTKS 225

Query: 61  APSASNSKKGKKKKGGKGKGKALANPPSVAPRRCPQIDKGKCFHYNQDGHWKRNCPWYLK 120
            PS+S +KK KKKKGG+G     AN  +    +  +  KG CFH NQ+GHWKRNCP YL 
Sbjct: 226 MPSSSGNKKWKKKKGGQGN---KANLAAAKTTKKAKAAKGICFHCNQEGHWKRNCPKYLA 285

Query: 121 EKKAAKAMTKADKDLLMLETCLVEND 147
           EKK AK   +   DLL+LETCLVEND
Sbjct: 286 EKKKAK---QGKYDLLVLETCLVEND 304

[Close]

BLAST of Bhi01G002244 vs. ExPASy TrEMBL
Match: A0A5D3CPJ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00040 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.5e-32
Identity = 86/146 (58.90%), Postives = 105/146 (71.92%), Query Frame = 0


Query: 1   FLHFVSNVILNKVKYNLTTLFNELQTYQSLLKSKERQKGKANVASSSRTFHKGSTLGMKS 60
           FL F SN ++NK+ Y LTTL NELQT++SL+K K  QKG+ANVA+S+R FH+GST G KS
Sbjct: 166 FLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIK-GQKGEANVATSTRKFHRGSTSGTKS 225

Query: 61  APSASNSKKGKKKKGGKGKGKALANPPSVAPRRCPQIDKGKCFHYNQDGHWKRNCPWYLK 120
            PS+S +KK KKKKGG+G     AN  +    +  +  KG CFH NQ+GHWKRNCP YL 
Sbjct: 226 MPSSSGNKKWKKKKGGQGN---KANLAAAKTTKKTKAAKGICFHCNQEGHWKRNCPKYLA 285

Query: 121 EKKAAKAMTKADKDLLMLETCLVEND 147
           EKK AK   +   DLL+LETCLVEND
Sbjct: 286 EKKKAK---QGKYDLLVLETCLVEND 304

[Close]

BLAST of Bhi01G002244 vs. ExPASy TrEMBL
Match: A0A5A7V4M1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G00930 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.5e-32
Identity = 86/146 (58.90%), Postives = 105/146 (71.92%), Query Frame = 0


Query: 1   FLHFVSNVILNKVKYNLTTLFNELQTYQSLLKSKERQKGKANVASSSRTFHKGSTLGMKS 60
           FL F SN ++NK+ Y LTTL NELQT++SL+K K  QKG+ANVA+S+R FH+GST G KS
Sbjct: 283 FLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIK-GQKGEANVATSTRKFHRGSTSGTKS 342

Query: 61  APSASNSKKGKKKKGGKGKGKALANPPSVAPRRCPQIDKGKCFHYNQDGHWKRNCPWYLK 120
            PS+S +KK KKKKGG+G     AN  +    +  +  KG CFH NQ+GHWKRNCP YL 
Sbjct: 343 MPSSSGNKKWKKKKGGQGN---KANLAAAKTTKKAKAAKGICFHCNQEGHWKRNCPKYLA 402

Query: 121 EKKAAKAMTKADKDLLMLETCLVEND 147
           EKK AK   +   DLL+LETCLVEND
Sbjct: 403 EKKKAK---QGKYDLLVLETCLVEND 421

[Close]

BLAST of Bhi01G002244 vs. ExPASy TrEMBL
Match: A0A5A7TU93 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002590 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.5e-32
Identity = 86/146 (58.90%), Postives = 105/146 (71.92%), Query Frame = 0


Query: 1   FLHFVSNVILNKVKYNLTTLFNELQTYQSLLKSKERQKGKANVASSSRTFHKGSTLGMKS 60
           FL F SN ++NK+ Y LTTL NELQT++SL+K K  QKG+ANVA+S+R FH+GST G KS
Sbjct: 166 FLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIK-GQKGEANVATSTRKFHRGSTSGTKS 225

Query: 61  APSASNSKKGKKKKGGKGKGKALANPPSVAPRRCPQIDKGKCFHYNQDGHWKRNCPWYLK 120
            PS+S +KK KKKKGG+G     AN  +    +  +  KG CFH NQ+GHWKRNCP YL 
Sbjct: 226 MPSSSGNKKWKKKKGGQGN---KANLAAAKTTKKAKAAKGICFHCNQEGHWKRNCPKYLA 285

Query: 121 EKKAAKAMTKADKDLLMLETCLVEND 147
           EKK AK   +   DLL+LETCLVEND
Sbjct: 286 EKKKAK---QGKYDLLVLETCLVEND 304

The following BLAST results are available for this feature:

BLAST of Bhi01G002244 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi01G002244 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi01G002244 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0035452.1	1.8e-32	58.90	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0044955.1	3.1e-32	58.90	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0048404.1	3.1e-32	58.90	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK14550.1	3.1e-32	58.90	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0054490.1	3.1e-32	58.90	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Bhi01G002244 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SW12	8.7e-33	58.90	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G0079...	[more]
A0A5A7SMH8	1.5e-32	58.90	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025...	[more]
A0A5D3CPJ6	1.5e-32	58.90	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G0004...	[more]
A0A5A7V4M1	1.5e-32	58.90	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G0093...	[more]
A0A5A7TU93	1.5e-32	58.90	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G00259...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 17..37
None	No IPR available	GENE3D	4.10.60.10		coord: 91..126 e-value: 4.2E-6 score: 28.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..92
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..65
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 90..124

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi01M002244	Bhi01M002244	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043170	macromolecule metabolic process
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0044238	primary metabolic process
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding