Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTCCTGCACTTTGTTAGCAATGTGATTCTTAACAAAGTGAAATACAACCTTACAACTCTCTTCAACGAGTTGCAGACATACCAATCTTTACTGAAAAGTAAGGAGAGACAGAAGGGTAAGGCAAATGTTGCTTCATCCTCCAGGACGTTCCATAAAGGTTCGACCTTAGGAATGAAGTCTGCACCTTCTGCTTCTAACTCTAAAAAGGGGAAAAAGAAGAAGGGTGGTAAGGGAAAAGGGAAGGCACTTGCTAACCCACCGTCTGTCGCCCCAAGGAGGTGTCCACAAATTGATAAGGGAAAGTGTTTCCACTACAACCAAGATGGACACTGGAAGAGGAACTGTCCTTGGTATCTGAAAGAGAAGAAAGCAGCCAAGGCTATGACCAAGGCGGATAAAGATTTACTTATGCTTGAAACTTGTTTGGTGGAGAATGAT
mRNA sequence
CTTCCTGCACTTTGTTAGCAATGTGATTCTTAACAAAGTGAAATACAACCTTACAACTCTCTTCAACGAGTTGCAGACATACCAATCTTTACTGAAAAGTAAGGAGAGACAGAAGGGTAAGGCAAATGTTGCTTCATCCTCCAGGACGTTCCATAAAGGTTCGACCTTAGGAATGAAGTCTGCACCTTCTGCTTCTAACTCTAAAAAGGGGAAAAAGAAGAAGGGTGGTAAGGGAAAAGGGAAGGCACTTGCTAACCCACCGTCTGTCGCCCCAAGGAGGTGTCCACAAATTGATAAGGGAAAGTGTTTCCACTACAACCAAGATGGACACTGGAAGAGGAACTGTCCTTGGTATCTGAAAGAGAAGAAAGCAGCCAAGGCTATGACCAAGGCGGATAAAGATTTACTTATGCTTGAAACTTGTTTGGTGGAGAATGAT
Coding sequence (CDS)
CTTCCTGCACTTTGTTAGCAATGTGATTCTTAACAAAGTGAAATACAACCTTACAACTCTCTTCAACGAGTTGCAGACATACCAATCTTTACTGAAAAGTAAGGAGAGACAGAAGGGTAAGGCAAATGTTGCTTCATCCTCCAGGACGTTCCATAAAGGTTCGACCTTAGGAATGAAGTCTGCACCTTCTGCTTCTAACTCTAAAAAGGGGAAAAAGAAGAAGGGTGGTAAGGGAAAAGGGAAGGCACTTGCTAACCCACCGTCTGTCGCCCCAAGGAGGTGTCCACAAATTGATAAGGGAAAGTGTTTCCACTACAACCAAGATGGACACTGGAAGAGGAACTGTCCTTGGTATCTGAAAGAGAAGAAAGCAGCCAAGGCTATGACCAAGGCGGATAAAGATTTACTTATGCTTGAAACTTGTTTGGTGGAGAATGAT
Protein sequence
FLHFVSNVILNKVKYNLTTLFNELQTYQSLLKSKERQKGKANVASSSRTFHKGSTLGMKSAPSASNSKKGKKKKGGKGKGKALANPPSVAPRRCPQIDKGKCFHYNQDGHWKRNCPWYLKEKKAAKAMTKADKDLLMLETCLVEND
Homology
BLAST of Bhi01G002244 vs. NCBI nr
Match:
KAA0035452.1 (gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 149.8 bits (377), Expect = 1.8e-32
Identity = 86/146 (58.90%), Postives = 105/146 (71.92%), Query Frame = 0
Query: 1 FLHFVSNVILNKVKYNLTTLFNELQTYQSLLKSKERQKGKANVASSSRTFHKGSTLGMKS 60
FLHF SN ++NK+ Y LTTL NELQT++SL+K K QKG+ANVA+ +R FH+GST G KS
Sbjct: 79 FLHFRSNAVMNKIAYTLTTLLNELQTFESLMKIK-GQKGEANVATFTRKFHRGSTSGTKS 138
Query: 61 APSASNSKKGKKKKGGKGKGKALANPPSVAPRRCPQIDKGKCFHYNQDGHWKRNCPWYLK 120
PS+S +KK KKKKGG+G AN + + + KG CFH NQ+GHWKRNCP YL
Sbjct: 139 MPSSSGNKKWKKKKGGQGN---KANLAAAKTTKKAKAAKGICFHCNQEGHWKRNCPKYLA 198
Query: 121 EKKAAKAMTKADKDLLMLETCLVEND 147
EKK AK + DLL+LETCLVEND
Sbjct: 199 EKKKAK---QGKYDLLVLETCLVEND 217
BLAST of Bhi01G002244 vs. NCBI nr
Match:
KAA0044955.1 (gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 149.1 bits (375), Expect = 3.1e-32
Identity = 86/146 (58.90%), Postives = 105/146 (71.92%), Query Frame = 0
Query: 1 FLHFVSNVILNKVKYNLTTLFNELQTYQSLLKSKERQKGKANVASSSRTFHKGSTLGMKS 60
FL F SN ++NK+ Y LTTL NELQT++SL+K K QKG+ANVA+S+R FH+GST G KS
Sbjct: 166 FLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIK-GQKGEANVATSTRKFHRGSTSGTKS 225
Query: 61 APSASNSKKGKKKKGGKGKGKALANPPSVAPRRCPQIDKGKCFHYNQDGHWKRNCPWYLK 120
PS+S +KK KKKKGG+G AN + + + KG CFH NQ+GHWKRNCP YL
Sbjct: 226 MPSSSGNKKWKKKKGGQGN---KANLAAAKTTKKAKAAKGICFHCNQEGHWKRNCPKYLA 285
Query: 121 EKKAAKAMTKADKDLLMLETCLVEND 147
EKK AK + DLL+LETCLVEND
Sbjct: 286 EKKKAK---QGKYDLLVLETCLVEND 304
BLAST of Bhi01G002244 vs. NCBI nr
Match:
KAA0048404.1 (gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 149.1 bits (375), Expect = 3.1e-32
Identity = 86/146 (58.90%), Postives = 105/146 (71.92%), Query Frame = 0
Query: 1 FLHFVSNVILNKVKYNLTTLFNELQTYQSLLKSKERQKGKANVASSSRTFHKGSTLGMKS 60
FL F SN ++NK+ Y LTTL NELQT++SL+K K QKG+ANVA+S+R FH+GST G KS
Sbjct: 165 FLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIK-GQKGEANVATSTRKFHRGSTSGTKS 224
Query: 61 APSASNSKKGKKKKGGKGKGKALANPPSVAPRRCPQIDKGKCFHYNQDGHWKRNCPWYLK 120
PS+S +KK KKKKGG+G AN + + + KG CFH NQ+GHWKRNCP YL
Sbjct: 225 MPSSSGNKKWKKKKGGQGN---KANLAAAKTTKKAKAAKGICFHCNQEGHWKRNCPKYLA 284
Query: 121 EKKAAKAMTKADKDLLMLETCLVEND 147
EKK AK + DLL+LETCLVEND
Sbjct: 285 EKKKAK---QGKYDLLVLETCLVEND 303
BLAST of Bhi01G002244 vs. NCBI nr
Match:
TYK14550.1 (gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 149.1 bits (375), Expect = 3.1e-32
Identity = 86/146 (58.90%), Postives = 105/146 (71.92%), Query Frame = 0
Query: 1 FLHFVSNVILNKVKYNLTTLFNELQTYQSLLKSKERQKGKANVASSSRTFHKGSTLGMKS 60
FL F SN ++NK+ Y LTTL NELQT++SL+K K QKG+ANVA+S+R FH+GST G KS
Sbjct: 166 FLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIK-GQKGEANVATSTRKFHRGSTSGTKS 225
Query: 61 APSASNSKKGKKKKGGKGKGKALANPPSVAPRRCPQIDKGKCFHYNQDGHWKRNCPWYLK 120
PS+S +KK KKKKGG+G AN + + + KG CFH NQ+GHWKRNCP YL
Sbjct: 226 MPSSSGNKKWKKKKGGQGN---KANLAAAKTTKKTKAAKGICFHCNQEGHWKRNCPKYLA 285
Query: 121 EKKAAKAMTKADKDLLMLETCLVEND 147
EKK AK + DLL+LETCLVEND
Sbjct: 286 EKKKAK---QGKYDLLVLETCLVEND 304
BLAST of Bhi01G002244 vs. NCBI nr
Match:
KAA0054490.1 (gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 149.1 bits (375), Expect = 3.1e-32
Identity = 86/146 (58.90%), Postives = 105/146 (71.92%), Query Frame = 0
Query: 1 FLHFVSNVILNKVKYNLTTLFNELQTYQSLLKSKERQKGKANVASSSRTFHKGSTLGMKS 60
FL F SN ++NK+ Y LTTL NELQT++SL+K K QKG+ANVA+S+R FH+GST G KS
Sbjct: 166 FLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIK-GQKGEANVATSTRKFHRGSTSGTKS 225
Query: 61 APSASNSKKGKKKKGGKGKGKALANPPSVAPRRCPQIDKGKCFHYNQDGHWKRNCPWYLK 120
PS+S +KK KKKKGG+G AN + + + KG CFH NQ+GHWKRNCP YL
Sbjct: 226 MPSSSGNKKWKKKKGGQGN---KANLAAAKTTKKAKAAKGICFHCNQEGHWKRNCPKYLA 285
Query: 121 EKKAAKAMTKADKDLLMLETCLVEND 147
EKK AK + DLL+LETCLVEND
Sbjct: 286 EKKKAK---QGKYDLLVLETCLVEND 304
BLAST of Bhi01G002244 vs. ExPASy TrEMBL
Match:
A0A5A7SW12 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G00790 PE=4 SV=1)
HSP 1 Score: 149.8 bits (377), Expect = 8.7e-33
Identity = 86/146 (58.90%), Postives = 105/146 (71.92%), Query Frame = 0
Query: 1 FLHFVSNVILNKVKYNLTTLFNELQTYQSLLKSKERQKGKANVASSSRTFHKGSTLGMKS 60
FLHF SN ++NK+ Y LTTL NELQT++SL+K K QKG+ANVA+ +R FH+GST G KS
Sbjct: 79 FLHFRSNAVMNKIAYTLTTLLNELQTFESLMKIK-GQKGEANVATFTRKFHRGSTSGTKS 138
Query: 61 APSASNSKKGKKKKGGKGKGKALANPPSVAPRRCPQIDKGKCFHYNQDGHWKRNCPWYLK 120
PS+S +KK KKKKGG+G AN + + + KG CFH NQ+GHWKRNCP YL
Sbjct: 139 MPSSSGNKKWKKKKGGQGN---KANLAAAKTTKKAKAAKGICFHCNQEGHWKRNCPKYLA 198
Query: 121 EKKAAKAMTKADKDLLMLETCLVEND 147
EKK AK + DLL+LETCLVEND
Sbjct: 199 EKKKAK---QGKYDLLVLETCLVEND 217
BLAST of Bhi01G002244 vs. ExPASy TrEMBL
Match:
A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)
HSP 1 Score: 149.1 bits (375), Expect = 1.5e-32
Identity = 86/146 (58.90%), Postives = 105/146 (71.92%), Query Frame = 0
Query: 1 FLHFVSNVILNKVKYNLTTLFNELQTYQSLLKSKERQKGKANVASSSRTFHKGSTLGMKS 60
FL F SN ++NK+ Y LTTL NELQT++SL+K K QKG+ANVA+S+R FH+GST G KS
Sbjct: 166 FLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIK-GQKGEANVATSTRKFHRGSTSGTKS 225
Query: 61 APSASNSKKGKKKKGGKGKGKALANPPSVAPRRCPQIDKGKCFHYNQDGHWKRNCPWYLK 120
PS+S +KK KKKKGG+G AN + + + KG CFH NQ+GHWKRNCP YL
Sbjct: 226 MPSSSGNKKWKKKKGGQGN---KANLAAAKTTKKAKAAKGICFHCNQEGHWKRNCPKYLA 285
Query: 121 EKKAAKAMTKADKDLLMLETCLVEND 147
EKK AK + DLL+LETCLVEND
Sbjct: 286 EKKKAK---QGKYDLLVLETCLVEND 304
BLAST of Bhi01G002244 vs. ExPASy TrEMBL
Match:
A0A5D3CPJ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00040 PE=4 SV=1)
HSP 1 Score: 149.1 bits (375), Expect = 1.5e-32
Identity = 86/146 (58.90%), Postives = 105/146 (71.92%), Query Frame = 0
Query: 1 FLHFVSNVILNKVKYNLTTLFNELQTYQSLLKSKERQKGKANVASSSRTFHKGSTLGMKS 60
FL F SN ++NK+ Y LTTL NELQT++SL+K K QKG+ANVA+S+R FH+GST G KS
Sbjct: 166 FLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIK-GQKGEANVATSTRKFHRGSTSGTKS 225
Query: 61 APSASNSKKGKKKKGGKGKGKALANPPSVAPRRCPQIDKGKCFHYNQDGHWKRNCPWYLK 120
PS+S +KK KKKKGG+G AN + + + KG CFH NQ+GHWKRNCP YL
Sbjct: 226 MPSSSGNKKWKKKKGGQGN---KANLAAAKTTKKTKAAKGICFHCNQEGHWKRNCPKYLA 285
Query: 121 EKKAAKAMTKADKDLLMLETCLVEND 147
EKK AK + DLL+LETCLVEND
Sbjct: 286 EKKKAK---QGKYDLLVLETCLVEND 304
BLAST of Bhi01G002244 vs. ExPASy TrEMBL
Match:
A0A5A7V4M1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G00930 PE=4 SV=1)
HSP 1 Score: 149.1 bits (375), Expect = 1.5e-32
Identity = 86/146 (58.90%), Postives = 105/146 (71.92%), Query Frame = 0
Query: 1 FLHFVSNVILNKVKYNLTTLFNELQTYQSLLKSKERQKGKANVASSSRTFHKGSTLGMKS 60
FL F SN ++NK+ Y LTTL NELQT++SL+K K QKG+ANVA+S+R FH+GST G KS
Sbjct: 283 FLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIK-GQKGEANVATSTRKFHRGSTSGTKS 342
Query: 61 APSASNSKKGKKKKGGKGKGKALANPPSVAPRRCPQIDKGKCFHYNQDGHWKRNCPWYLK 120
PS+S +KK KKKKGG+G AN + + + KG CFH NQ+GHWKRNCP YL
Sbjct: 343 MPSSSGNKKWKKKKGGQGN---KANLAAAKTTKKAKAAKGICFHCNQEGHWKRNCPKYLA 402
Query: 121 EKKAAKAMTKADKDLLMLETCLVEND 147
EKK AK + DLL+LETCLVEND
Sbjct: 403 EKKKAK---QGKYDLLVLETCLVEND 421
BLAST of Bhi01G002244 vs. ExPASy TrEMBL
Match:
A0A5A7TU93 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002590 PE=4 SV=1)
HSP 1 Score: 149.1 bits (375), Expect = 1.5e-32
Identity = 86/146 (58.90%), Postives = 105/146 (71.92%), Query Frame = 0
Query: 1 FLHFVSNVILNKVKYNLTTLFNELQTYQSLLKSKERQKGKANVASSSRTFHKGSTLGMKS 60
FL F SN ++NK+ Y LTTL NELQT++SL+K K QKG+ANVA+S+R FH+GST G KS
Sbjct: 166 FLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIK-GQKGEANVATSTRKFHRGSTSGTKS 225
Query: 61 APSASNSKKGKKKKGGKGKGKALANPPSVAPRRCPQIDKGKCFHYNQDGHWKRNCPWYLK 120
PS+S +KK KKKKGG+G AN + + + KG CFH NQ+GHWKRNCP YL
Sbjct: 226 MPSSSGNKKWKKKKGGQGN---KANLAAAKTTKKAKAAKGICFHCNQEGHWKRNCPKYLA 285
Query: 121 EKKAAKAMTKADKDLLMLETCLVEND 147
EKK AK + DLL+LETCLVEND
Sbjct: 286 EKKKAK---QGKYDLLVLETCLVEND 304
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7SW12 | 8.7e-33 | 58.90 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G0079... | [more] |
A0A5A7SMH8 | 1.5e-32 | 58.90 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025... | [more] |
A0A5D3CPJ6 | 1.5e-32 | 58.90 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G0004... | [more] |
A0A5A7V4M1 | 1.5e-32 | 58.90 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G0093... | [more] |
A0A5A7TU93 | 1.5e-32 | 58.90 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G00259... | [more] |