Cla019335 (gene) Watermelon (97103) v1

Overview
NameCla019335
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
Description50S ribosomal protein L12-2 (AHRD V1 ***- B6SHT7_MAIZE); contains Interpro domain(s) IPR015608 Ribosomal protein L12, chloroplast
LocationChr3 : 4301411 .. 4302055 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGCTTAGTTTTAAGAATAAGGCATCTTCTACCCAATGTGTTTGCAAACACCATTCGCTCTCCTGCTGTAGCCCTCAATCCTCTCAACATAAATGGATTACATAGAAATTATGCTCAACCTGCTCGGATAGAGGAGGAAGAGGAAGAGGTAGAAATTGACCAGAGAAGGCTTCCAGCTGATTACGATCCTGCTAATTTTGATCCAACACAGCACCGTAGTCCTCCGACTGATCGTGTTTTTAGGCTTGTAGATGAAATATCTGGGCTCACATTAGTTGAAATTTCTGAATTATCTTCCATTTTGAGGAAAAAATTGGGAATGACAGACATGCCAGTTGTTGGAGTTATGAAACCAGGAGCTGCTGGATTGGCTGGAATGGGAATGAAGGCATCATCAGCAACTGCCAAGGAGGAGAAGAAGGCAGAAAAGACTGTTTACGAGTTGAAACTAGAGTCTTACGAAGCATCTGCAAAGATTAAAATTATCAAGGAGGTAAGAAGTTTCACTGATTTAGGTCTGAAAGAGGCAAAGGATTTAGTGGAGAAAACCCCATCAGTGTTGAAGAAGGGACTATCAAAGGAAGAGGGTGAACAAATAATTGAAAAGATGAAGGCACTTGGTGCAAAAGTGATCTTGGAATGA

mRNA sequence

ATGCGCTTAGTTTTAAGAATAAGGCATCTTCTACCCAATGTGTTTGCAAACACCATTCGCTCTCCTGCTGTAGCCCTCAATCCTCTCAACATAAATGGATTACATAGAAATTATGCTCAACCTGCTCGGATAGAGGAGGAAGAGGAAGAGGTAGAAATTGACCAGAGAAGGCTTCCAGCTGATTACGATCCTGCTAATTTTGATCCAACACAGCACCGTAGTCCTCCGACTGATCGTGTTTTTAGGCTTGTAGATGAAATATCTGGGCTCACATTAGTTGAAATTTCTGAATTATCTTCCATTTTGAGGAAAAAATTGGGAATGACAGACATGCCAGTTGTTGGAGTTATGAAACCAGGAGCTGCTGGATTGGCTGGAATGGGAATGAAGGCATCATCAGCAACTGCCAAGGAGGAGAAGAAGGCAGAAAAGACTGTTTACGAGTTGAAACTAGAGTCTTACGAAGCATCTGCAAAGATTAAAATTATCAAGGAGGTAAGAAGTTTCACTGATTTAGGTCTGAAAGAGGCAAAGGATTTAGTGGAGAAAACCCCATCAGTGTTGAAGAAGGGACTATCAAAGGAAGAGGGTGAACAAATAATTGAAAAGATGAAGGCACTTGGTGCAAAAGTGATCTTGGAATGA

Coding sequence (CDS)

ATGCGCTTAGTTTTAAGAATAAGGCATCTTCTACCCAATGTGTTTGCAAACACCATTCGCTCTCCTGCTGTAGCCCTCAATCCTCTCAACATAAATGGATTACATAGAAATTATGCTCAACCTGCTCGGATAGAGGAGGAAGAGGAAGAGGTAGAAATTGACCAGAGAAGGCTTCCAGCTGATTACGATCCTGCTAATTTTGATCCAACACAGCACCGTAGTCCTCCGACTGATCGTGTTTTTAGGCTTGTAGATGAAATATCTGGGCTCACATTAGTTGAAATTTCTGAATTATCTTCCATTTTGAGGAAAAAATTGGGAATGACAGACATGCCAGTTGTTGGAGTTATGAAACCAGGAGCTGCTGGATTGGCTGGAATGGGAATGAAGGCATCATCAGCAACTGCCAAGGAGGAGAAGAAGGCAGAAAAGACTGTTTACGAGTTGAAACTAGAGTCTTACGAAGCATCTGCAAAGATTAAAATTATCAAGGAGGTAAGAAGTTTCACTGATTTAGGTCTGAAAGAGGCAAAGGATTTAGTGGAGAAAACCCCATCAGTGTTGAAGAAGGGACTATCAAAGGAAGAGGGTGAACAAATAATTGAAAAGATGAAGGCACTTGGTGCAAAAGTGATCTTGGAATGA

Protein sequence

MRLVLRIRHLLPNVFANTIRSPAVALNPLNINGLHRNYAQPARIEEEEEEVEIDQRRLPADYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEISELSSILRKKLGMTDMPVVGVMKPGAAGLAGMGMKASSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKGLSKEEGEQIIEKMKALGAKVILE
Homology
[Close]
BLAST of Cla019335 vs. Swiss-Prot
Match: MNP1_SCHPO (54S ribosomal protein L12, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mrpl12 PE=3 SV=2)

HSP 1 Score: 105.1 bits (261), Expect = 9.4e-22
Identity = 58/136 (42.65%), Postives = 82/136 (60.29%), Query Frame = 1 

Query: 79  RVFRLVDEISGLTLVEISELSSILRKKLGMTDMPVVGVMKPGAAGLAGMGMKASSATAKE 138
           ++  +VD+IS L+L+E SEL   L++KL + ++  +  + P  A  A      S   A E
Sbjct: 43  QIGEMVDKISSLSLLETSELVKQLKEKLNIAEIAPMAAVAPAVASAA-----PSEEKAPE 102

Query: 139 EKKAEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKGLSKEEGE 198
           EKK EKT + LKLES++A +K K+IKEV+S   L L +AK  VE  P VLK+ + KE+ E
Sbjct: 103 EKKEEKTTWNLKLESFDAGSKAKVIKEVKSLLGLSLVDAKKFVESAPKVLKENILKEDAE 162

Query: 199 QIIEKMKALGAKVILE 215
            I  K++ L  KV+LE
Sbjct: 163 AIKSKLEKLSCKVVLE 173

[Close]
BLAST of Cla019335 vs. Swiss-Prot
Match: RL7_LIBAF (50S ribosomal protein L7/L12 OS=Liberibacter africanus GN=rplL PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.5e-19
Identity = 55/131 (41.98%), Postives = 81/131 (61.83%), Query Frame = 1 

Query: 83  LVDEISGLTLVEISELSSILRKKLGMTDMPVVGVMKPGAAGLAGMGMKASSATAKEEKKA 142
           +V+++S LTL++ +ELS  L ++ G++    V V+             AS+A       A
Sbjct: 7   IVEKLSSLTLLQAAELSKRLEEEWGVSAAAPVAVV-------------ASAAGESAAAVA 66

Query: 143 EKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKGLSKEEGEQIIE 202
           EKT +E+ LE ++A  KI +IKEVR+ T+LGLKEAKD VE  P  LK G+SK+E E++ +
Sbjct: 67  EKTEFEVFLEGFDAKKKISVIKEVRAITELGLKEAKDFVESAPKSLKTGVSKDEAEELKK 124

Query: 203 KMKALGAKVIL 214
           K++A GA +IL
Sbjct: 127 KLEAAGATIIL 124

[Close]
BLAST of Cla019335 vs. Swiss-Prot
Match: RL7_BRASB (50S ribosomal protein L7/L12 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=rplL PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 2.8e-18
Identity = 55/133 (41.35%), Postives = 82/133 (61.65%), Query Frame = 1 

Query: 82  RLVDEISGLTLVEISELSSILRKKLGMTDMPVVGVMKPGAAGLAGMGMKASSATAKEEKK 141
           ++VD++S LT++E +EL+ +L +K G++    V V  PGA G         +A A  E+K
Sbjct: 6   KIVDDLSALTVLEAAELAKLLEEKWGVSAAAAVAVAAPGAGG---------AAAAPAEEK 65

Query: 142 AEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKGLSKEEGEQII 201
            E TV    + +     KI++IKEVR+ T LGLKEAKDLVE  P  +K+G++K+E E+I 
Sbjct: 66  TEFTV----VLASAGDKKIEVIKEVRAITGLGLKEAKDLVEGAPKPVKEGVNKDEAEKIK 125

Query: 202 EKMKALGAKVILE 215
            +++  GAKV L+
Sbjct: 126 GQLEKAGAKVELK 125

[Close]
BLAST of Cla019335 vs. Swiss-Prot
Match: MNP1_YEAST (54S ribosomal protein L12, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MNP1 PE=1 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 2.8e-18
Identity = 63/148 (42.57%), Postives = 90/148 (60.81%), Query Frame = 1 

Query: 75  PPTDRVFRLVDEISGLTLVEISELSSILRKKLGMTD--MPVVGVMKPGAAGLAGMGMKAS 134
           P   ++ ++V +IS LTL+E S L + L+  L + +  MP+ G M  GAAG AG G   S
Sbjct: 49  PVDPKISKIVQDISQLTLLETSSLINELKTVLNIPEISMPMGGFMA-GAAG-AGAGNVPS 108

Query: 135 S-----ATAKEEKKAE-KTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDLVEKTPS 194
           S     + A+EE K E KTV+ +KL+S++   K K+IKEV+    L L EAK  VE  P 
Sbjct: 109 STGEAGSGAEEEAKPEAKTVFTVKLDSFDTKTKAKVIKEVKGLLGLSLVEAKKFVEAAPK 168

Query: 195 VLKKGLSKEEGEQIIEKMKALGAKVILE 215
           VLK+ ++K++ E+I + ++ LGAKV LE
Sbjct: 169 VLKENVAKDDAEKIKKTLEDLGAKVSLE 194

[Close]
BLAST of Cla019335 vs. Swiss-Prot
Match: RL7_BRASO (50S ribosomal protein L7/L12 OS=Bradyrhizobium sp. (strain ORS278) GN=rplL PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 3.7e-18
Identity = 55/133 (41.35%), Postives = 81/133 (60.90%), Query Frame = 1 

Query: 82  RLVDEISGLTLVEISELSSILRKKLGMTDMPVVGVMKPGAAGLAGMGMKASSATAKEEKK 141
           ++VD++S LT++E +EL+ +L +K G++    V V  PG  G         +A A  E+K
Sbjct: 6   KIVDDLSSLTVLEAAELAKLLEEKWGVSAAAAVAVAAPGGGG---------AAAAPAEEK 65

Query: 142 AEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKGLSKEEGEQII 201
            E TV    + +     KI++IKEVR+ T LGLKEAKDLVE  P  +K+G++KEE E+I 
Sbjct: 66  TEFTV----VLASAGDKKIEVIKEVRAITGLGLKEAKDLVEGAPKPVKEGVNKEEAEKIK 125

Query: 202 EKMKALGAKVILE 215
            +++  GAKV L+
Sbjct: 126 GQLEKAGAKVELK 125

[Close]
BLAST of Cla019335 vs. TrEMBL
Match: A0A0A0LU08_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G057000 PE=3 SV=1)

HSP 1 Score: 373.6 bits (958), Expect = 1.6e-100
Identity = 192/214 (89.72%), Postives = 200/214 (93.46%), Query Frame = 1 

Query: 1   MRLVLRIRHLLPNVFANTIRSPAVALNPLNINGLHRNYAQPARIEEEEEEVEIDQRRLPA 60
           MRLV RI HLLPNVFANTIRS  VALNPLN NGLHRNYAQP+RIEEEEEEVEIDQRRLPA
Sbjct: 1   MRLVSRISHLLPNVFANTIRSSTVALNPLNRNGLHRNYAQPSRIEEEEEEVEIDQRRLPA 60

Query: 61  DYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEISELSSILRKKLGMTDMPVVGVMKPG 120
           DYDPANFDPT+HRSPPTDRVFRLVDEISGLTLVE++E+SSIL KKLGMT+MPV G MKPG
Sbjct: 61  DYDPANFDPTEHRSPPTDRVFRLVDEISGLTLVEVAEMSSILMKKLGMTEMPVAGYMKPG 120

Query: 121 AAGLAGMGMKASSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDL 180
           A GLAGM  K SSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRS TDLGLKEAKDL
Sbjct: 121 AVGLAGMVKKGSSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSLTDLGLKEAKDL 180

Query: 181 VEKTPSVLKKGLSKEEGEQIIEKMKALGAKVILE 215
           V+K PSVLKKGLSKEEGEQI+EKMKALGAKVILE
Sbjct: 181 VDKAPSVLKKGLSKEEGEQIVEKMKALGAKVILE 214

[Close]
BLAST of Cla019335 vs. TrEMBL
Match: W9S8M4_9ROSA (50S ribosomal protein OS=Morus notabilis GN=L484_005958 PE=3 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 2.5e-82
Identity = 161/216 (74.54%), Postives = 184/216 (85.19%), Query Frame = 1 

Query: 1   MRLVLRIRHLLPNVF-ANTIRSPAVALNPLNINGLHRNYAQPARIEEEEEEVEIDQRRLP 60
           M LVLR++H LPN F     RS  VALNP NINGL +NY QPA  EEE+EEVE DQRRLP
Sbjct: 1   MSLVLRLKHHLPNGFYRKPFRSTVVALNPGNINGLWKNYGQPAIKEEEDEEVEFDQRRLP 60

Query: 61  ADYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEISELSSILRKKLGMTDMPVVGVMKP 120
            DYDPA FDP++HRSPPT+RVFRLVDEISGLTL E++EL +I  +K GMT+ P VGVMKP
Sbjct: 61  TDYDPATFDPSEHRSPPTERVFRLVDEISGLTLAEVAELGAIFMRKRGMTEPPSVGVMKP 120

Query: 121 GAAGLAGMGMKASSAT-AKEEKKAEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAK 180
           GAAGLAGM +   +AT AKEEKK EKTV+ELKLESYEA++KIK+IKEVRSFTDLGLKEAK
Sbjct: 121 GAAGLAGMALATKAATAAKEEKKPEKTVFELKLESYEAASKIKLIKEVRSFTDLGLKEAK 180

Query: 181 DLVEKTPSVLKKGLSKEEGEQIIEKMKALGAKVILE 215
           DLVEKTPS+LKKGLSKEEGEQ++EK+K LGAKV+LE
Sbjct: 181 DLVEKTPSILKKGLSKEEGEQLVEKLKELGAKVVLE 216

[Close]
BLAST of Cla019335 vs. TrEMBL
Match: M5WHF2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011350mg PE=3 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 4.5e-79
Identity = 161/216 (74.54%), Postives = 185/216 (85.65%), Query Frame = 1 

Query: 1   MRLVLRIRHLLPNVFANT-IRSPAVALNPLNINGLHRNYAQPARIEEEEEE-VEIDQRRL 60
           M LVLR+R  LPN F    + SP  ALNP ++NG  +N++QPAR EEEEEE VEIDQRRL
Sbjct: 1   MSLVLRLRQHLPNGFCRRPLISPLAALNPGSLNGFCQNFSQPARKEEEEEEEVEIDQRRL 60

Query: 61  PADYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEISELSSILRKKLGMTDMPVVGVMK 120
           PADYDPA FDPT+HRSPPTDRVFRLVDEIS LTL E++EL SI+ +K GM + P+VGVMK
Sbjct: 61  PADYDPATFDPTEHRSPPTDRVFRLVDEISSLTLAEVAELGSIMMRKKGMKEPPIVGVMK 120

Query: 121 PGAAGLAGMGMKASSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAK 180
           PGAAGL G+ MK  +A AKEEKK EKTV+ELKLES+EA++KIK+IKEVRSFTDLGLKEAK
Sbjct: 121 PGAAGL-GLAMKGPAA-AKEEKKPEKTVFELKLESFEAASKIKLIKEVRSFTDLGLKEAK 180

Query: 181 DLVEKTPSVLKKGLSKEEGEQIIEKMKALGAKVILE 215
           DLVEK PSVLKKGLSKEEGEQ+IEK+KALGAKV+LE
Sbjct: 181 DLVEKAPSVLKKGLSKEEGEQLIEKLKALGAKVVLE 214

[Close]
BLAST of Cla019335 vs. TrEMBL
Match: A0A061DXQ8_THECC (Ribosomal protein L7/L12 isoform 1 OS=Theobroma cacao GN=TCM_006020 PE=3 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 1.4e-77
Identity = 163/221 (73.76%), Postives = 185/221 (83.71%), Query Frame = 1 

Query: 1   MRLVLRIRHLLPNVF--ANTIRSPAVALNPLNINGLHRNYAQPARIEEE--EEEVEIDQR 60
           M LVLR+RH L + F       S  V LN  + N L RN++QPA+ E+E  EEEVEIDQR
Sbjct: 1   MSLVLRLRHHLHSGFFCRKPFESQIVTLNAFSSNRLSRNFSQPAKQEQEDEEEEVEIDQR 60

Query: 61  RLPADYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEISELSSILRKKLGMTDMPVVGV 120
           RLPADYDP+NFDPT+HRSPPT+RV+RLVDEISGLTL EI+EL SI+ KK GMT+ P VGV
Sbjct: 61  RLPADYDPSNFDPTEHRSPPTERVWRLVDEISGLTLSEIAELGSIIMKKRGMTEPPTVGV 120

Query: 121 MKPGAA-GLAGMGMKASS--ATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSFTDLG 180
           MK GAA GLAGM  KA+   A AKEEKKAEKTV+ELKLESYEA++KIKIIKEVRSFTDLG
Sbjct: 121 MKAGAAAGLAGMAKKAAGGGAAAKEEKKAEKTVFELKLESYEAASKIKIIKEVRSFTDLG 180

Query: 181 LKEAKDLVEKTPSVLKKGLSKEEGEQIIEKMKALGAKVILE 215
           LKEAKDLVEKTP+VLKKG+SKEEGEQ+IEKMKALGAKV+LE
Sbjct: 181 LKEAKDLVEKTPAVLKKGVSKEEGEQLIEKMKALGAKVVLE 221

[Close]
BLAST of Cla019335 vs. TrEMBL
Match: B9GY19_POPTR (Ribosomal protein L12 OS=Populus trichocarpa GN=POPTR_0003s07240g PE=3 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 2.7e-76
Identity = 157/219 (71.69%), Postives = 188/219 (85.84%), Query Frame = 1 

Query: 1   MRLVLRIRHLLPNVFANTIRSPAVA-LNPLNING-LHRNYAQPAR-IE-EEEEEVEIDQR 60
           M L+ R+RH LPN F+     P ++ L PLN N  L R +A+ AR +E EEEEEVEIDQR
Sbjct: 1   MSLISRLRHCLPNGFST---KPTISPLMPLNFNAVLSRGFAEAARKVEAEEEEEVEIDQR 60

Query: 61  RLPADYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEISELSSILRKKLGMTDMPVVGV 120
           RLP DYDPA FDPT+HRSPPT+RVF+LV+EI+GLTL+EISEL +I+ K++ MT+ P +GV
Sbjct: 61  RLPTDYDPATFDPTEHRSPPTERVFKLVEEIAGLTLMEISELGTIIMKRMKMTEPPTIGV 120

Query: 121 MKPGAAGLAGMGMKA-SSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSFTDLGLK 180
           +K GAAGLAGM MKA ++A AKEEKKAEKTV+ELKLES+EA++KIK+IKEVRSFTDLGLK
Sbjct: 121 LKGGAAGLAGMAMKAPAAAAAKEEKKAEKTVFELKLESFEAASKIKVIKEVRSFTDLGLK 180

Query: 181 EAKDLVEKTPSVLKKGLSKEEGEQIIEKMKALGAKVILE 215
           EAKDLVEKTPSVLKKG+SKEEGEQIIEKMKA+GAKV+LE
Sbjct: 181 EAKDLVEKTPSVLKKGVSKEEGEQIIEKMKAIGAKVVLE 216

[Close]
BLAST of Cla019335 vs. NCBI nr
Match: gi|449454776|ref|XP_004145130.1| (PREDICTED: 54S ribosomal protein L12, mitochondrial [Cucumis sativus])

HSP 1 Score: 373.6 bits (958), Expect = 2.3e-100
Identity = 192/214 (89.72%), Postives = 200/214 (93.46%), Query Frame = 1 

Query: 1   MRLVLRIRHLLPNVFANTIRSPAVALNPLNINGLHRNYAQPARIEEEEEEVEIDQRRLPA 60
           MRLV RI HLLPNVFANTIRS  VALNPLN NGLHRNYAQP+RIEEEEEEVEIDQRRLPA
Sbjct: 1   MRLVSRISHLLPNVFANTIRSSTVALNPLNRNGLHRNYAQPSRIEEEEEEVEIDQRRLPA 60

Query: 61  DYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEISELSSILRKKLGMTDMPVVGVMKPG 120
           DYDPANFDPT+HRSPPTDRVFRLVDEISGLTLVE++E+SSIL KKLGMT+MPV G MKPG
Sbjct: 61  DYDPANFDPTEHRSPPTDRVFRLVDEISGLTLVEVAEMSSILMKKLGMTEMPVAGYMKPG 120

Query: 121 AAGLAGMGMKASSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDL 180
           A GLAGM  K SSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRS TDLGLKEAKDL
Sbjct: 121 AVGLAGMVKKGSSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSLTDLGLKEAKDL 180

Query: 181 VEKTPSVLKKGLSKEEGEQIIEKMKALGAKVILE 215
           V+K PSVLKKGLSKEEGEQI+EKMKALGAKVILE
Sbjct: 181 VDKAPSVLKKGLSKEEGEQIVEKMKALGAKVILE 214

[Close]
BLAST of Cla019335 vs. NCBI nr
Match: gi|659067613|ref|XP_008440389.1| (PREDICTED: 54S ribosomal protein L12, mitochondrial [Cucumis melo])

HSP 1 Score: 373.6 bits (958), Expect = 2.3e-100
Identity = 193/214 (90.19%), Postives = 200/214 (93.46%), Query Frame = 1 

Query: 1   MRLVLRIRHLLPNVFANTIRSPAVALNPLNINGLHRNYAQPARIEEEEEEVEIDQRRLPA 60
           MRLV RI HLLPNVFANTIRS  VALNPLN NG+HRNYAQP+RIEEEEEEVEIDQRRLPA
Sbjct: 1   MRLVSRISHLLPNVFANTIRSSTVALNPLNRNGVHRNYAQPSRIEEEEEEVEIDQRRLPA 60

Query: 61  DYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEISELSSILRKKLGMTDMPVVGVMKPG 120
           DYDPANFDPT+HRSPPTDRVFRLVDEISGLTLVE++ELSSIL KKLGMT+MPV G MKPG
Sbjct: 61  DYDPANFDPTEHRSPPTDRVFRLVDEISGLTLVEVAELSSILMKKLGMTEMPVAGYMKPG 120

Query: 121 AAGLAGMGMKASSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDL 180
           A GLAGM  K SSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRS TDLGLKEAKDL
Sbjct: 121 AVGLAGMVKKVSSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSLTDLGLKEAKDL 180

Query: 181 VEKTPSVLKKGLSKEEGEQIIEKMKALGAKVILE 215
           V+K PSVLKKGLSKEEGEQIIEKMKALGAKVILE
Sbjct: 181 VDKAPSVLKKGLSKEEGEQIIEKMKALGAKVILE 214

[Close]
BLAST of Cla019335 vs. NCBI nr
Match: gi|703123768|ref|XP_010102896.1| (50S ribosomal protein [Morus notabilis])

HSP 1 Score: 313.2 bits (801), Expect = 3.6e-82
Identity = 161/216 (74.54%), Postives = 184/216 (85.19%), Query Frame = 1 

Query: 1   MRLVLRIRHLLPNVF-ANTIRSPAVALNPLNINGLHRNYAQPARIEEEEEEVEIDQRRLP 60
           M LVLR++H LPN F     RS  VALNP NINGL +NY QPA  EEE+EEVE DQRRLP
Sbjct: 1   MSLVLRLKHHLPNGFYRKPFRSTVVALNPGNINGLWKNYGQPAIKEEEDEEVEFDQRRLP 60

Query: 61  ADYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEISELSSILRKKLGMTDMPVVGVMKP 120
            DYDPA FDP++HRSPPT+RVFRLVDEISGLTL E++EL +I  +K GMT+ P VGVMKP
Sbjct: 61  TDYDPATFDPSEHRSPPTERVFRLVDEISGLTLAEVAELGAIFMRKRGMTEPPSVGVMKP 120

Query: 121 GAAGLAGMGMKASSAT-AKEEKKAEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAK 180
           GAAGLAGM +   +AT AKEEKK EKTV+ELKLESYEA++KIK+IKEVRSFTDLGLKEAK
Sbjct: 121 GAAGLAGMALATKAATAAKEEKKPEKTVFELKLESYEAASKIKLIKEVRSFTDLGLKEAK 180

Query: 181 DLVEKTPSVLKKGLSKEEGEQIIEKMKALGAKVILE 215
           DLVEKTPS+LKKGLSKEEGEQ++EK+K LGAKV+LE
Sbjct: 181 DLVEKTPSILKKGLSKEEGEQLVEKLKELGAKVVLE 216

[Close]
BLAST of Cla019335 vs. NCBI nr
Match: gi|1000939117|ref|XP_015583414.1| (PREDICTED: 50S ribosomal protein L7/L12 isoform X1 [Ricinus communis])

HSP 1 Score: 305.8 bits (782), Expect = 5.8e-80
Identity = 161/218 (73.85%), Postives = 186/218 (85.32%), Query Frame = 1 

Query: 1   MRLVLRI-RHLLPNVFANTIRSPAVALNPLNING--LHRNYAQPARI-EEEEEEVEIDQR 60
           M L+LR+  HL   V    + SP V LN +N+NG  L R YAQ AR  EEEEEEVEIDQR
Sbjct: 1   MSLILRLSHHLTSGVSKKPLFSPLVQLNLVNVNGVLLSRGYAQAARKDEEEEEEVEIDQR 60

Query: 61  RLPADYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEISELSSILRKKLGMTDMPVVGV 120
           RLPADYDPA FDPT+HRSPPT+RVF+LVDE++GLTLVE++ELSSI+ KK GMT++P VGV
Sbjct: 61  RLPADYDPATFDPTEHRSPPTERVFKLVDEVAGLTLVEVAELSSIIMKKRGMTELPTVGV 120

Query: 121 MKPGAAGLAGMGMKASSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKE 180
           +K GAAGLAGM MKA +A AKEEKK EKTV+ELKLESYEA++KIKIIKEVRSFTDLGLKE
Sbjct: 121 LKGGAAGLAGMAMKAPAAAAKEEKKPEKTVFELKLESYEAASKIKIIKEVRSFTDLGLKE 180

Query: 181 AKDLVEKTPSVLKKGLSKEEGEQIIEKMKALGAKVILE 215
           AKDLVEKTPS+LK G+SKEE EQIIEKMKA+GAKV++E
Sbjct: 181 AKDLVEKTPSILKAGVSKEEAEQIIEKMKAVGAKVVME 218

[Close]
BLAST of Cla019335 vs. NCBI nr
Match: gi|802551114|ref|XP_012064624.1| (PREDICTED: 50S ribosomal protein L12, cyanelle [Jatropha curcas])

HSP 1 Score: 303.5 bits (776), Expect = 2.9e-79
Identity = 159/217 (73.27%), Postives = 192/217 (88.48%), Query Frame = 1 

Query: 1   MRLVLRIRHLLPNVFAN-TIRSPAVALNPLNING-LHRNYAQPARI-EEEEEEVEIDQRR 60
           M L+ R+R+ LPN F+  ++ SP V L+ +++NG L R +AQ  R  E+EEEEVEIDQRR
Sbjct: 8   MSLIFRLRNHLPNGFSTKSLFSPLVPLSFMSLNGVLCRGFAQSLRKDEDEEEEVEIDQRR 67

Query: 61  LPADYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEISELSSILRKKLGMTDMPVVGVM 120
           LP DYDPA FDPT+HRSPPT+RVFRLVDEISGLTLVE++ELSSI+ +K GMT++PVVG+M
Sbjct: 68  LPTDYDPATFDPTEHRSPPTERVFRLVDEISGLTLVEVAELSSIIMRKKGMTELPVVGIM 127

Query: 121 KPGAAGLAGMGMKASSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEA 180
           K GAAGLAGM +KAS+A+AKEEKK EKTV+ELKLES+EA++KIKIIKEVRSFTDLGLKEA
Sbjct: 128 KGGAAGLAGMAVKASAASAKEEKKPEKTVFELKLESFEAASKIKIIKEVRSFTDLGLKEA 187

Query: 181 KDLVEKTPSVLKKGLSKEEGEQIIEKMKALGAKVILE 215
           KDLVEKTPSVLK G+SKEEGE+IIEKMKA+GAKV++E
Sbjct: 188 KDLVEKTPSVLKTGVSKEEGEKIIEKMKAVGAKVVME 224

The following BLAST results are available for this feature:
BLAST of Cla019335 vs. Swiss-Prot
Match NameE-valueIdentityDescription
MNP1_SCHPO9.4e-2242.6554S ribosomal protein L12, mitochondrial OS=Schizosaccharomyces pombe (strain 97... [more]
RL7_LIBAF1.5e-1941.9850S ribosomal protein L7/L12 OS=Liberibacter africanus GN=rplL PE=3 SV=1[more]
RL7_BRASB2.8e-1841.3550S ribosomal protein L7/L12 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182... [more]
MNP1_YEAST2.8e-1842.5754S ribosomal protein L12, mitochondrial OS=Saccharomyces cerevisiae (strain ATC... [more]
RL7_BRASO3.7e-1841.3550S ribosomal protein L7/L12 OS=Bradyrhizobium sp. (strain ORS278) GN=rplL PE=3 ... [more]
BLAST of Cla019335 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LU08_CUCSA1.6e-10089.72Uncharacterized protein OS=Cucumis sativus GN=Csa_1G057000 PE=3 SV=1[more]
W9S8M4_9ROSA2.5e-8274.5450S ribosomal protein OS=Morus notabilis GN=L484_005958 PE=3 SV=1[more]
M5WHF2_PRUPE4.5e-7974.54Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011350mg PE=3 SV=1[more]
A0A061DXQ8_THECC1.4e-7773.76Ribosomal protein L7/L12 isoform 1 OS=Theobroma cacao GN=TCM_006020 PE=3 SV=1[more]
B9GY19_POPTR2.7e-7671.69Ribosomal protein L12 OS=Populus trichocarpa GN=POPTR_0003s07240g PE=3 SV=1[more]
BLAST of Cla019335 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449454776|ref|XP_004145130.1|2.3e-10089.72PREDICTED: 54S ribosomal protein L12, mitochondrial [Cucumis sativus][more]
gi|659067613|ref|XP_008440389.1|2.3e-10090.19PREDICTED: 54S ribosomal protein L12, mitochondrial [Cucumis melo][more]
gi|703123768|ref|XP_010102896.1|3.6e-8274.5450S ribosomal protein [Morus notabilis][more]
gi|1000939117|ref|XP_015583414.1|5.8e-8073.85PREDICTED: 50S ribosomal protein L7/L12 isoform X1 [Ricinus communis][more]
gi|802551114|ref|XP_012064624.1|2.9e-7973.27PREDICTED: 50S ribosomal protein L12, cyanelle [Jatropha curcas][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000206Ribosomal_L7/12
IPR008932Ribosomal_L7/L12_oligo
IPR013823Ribosomal_L7/L12_C
IPR014719Ribosomal_L7/12_C/ClpS-like
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0006354 DNA-templated transcription, elongation
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU15204watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU15740watermelon EST collection version 2.0transcribed_cluster
WMU42140watermelon EST collection version 2.0transcribed_cluster
WMU64977watermelon EST collection version 2.0transcribed_cluster
WMU71329watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla019335Cla019335.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU42140WMU42140transcribed_cluster
WMU71329WMU71329transcribed_cluster
WMU64977WMU64977transcribed_cluster
WMU15204WMU15204transcribed_cluster
WMU15740WMU15740transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000206Ribosomal protein L7/L12HAMAPMF_00368Ribosomal_L7_L12coord: 77..214
score: 17
IPR008932Ribosomal protein L7/L12, oligomerisationPFAMPF16320Ribosomal_L12_Ncoord: 83..123
score: 5.5
IPR008932Ribosomal protein L7/L12, oligomerisationunknownSSF48300Ribosomal protein L7/12, oligomerisation (N-terminal) domaincoord: 82..123
score: 1.1
IPR013823Ribosomal protein L7/L12, C-terminalPRODOMPD001326coord: 151..213
score: 1.0
IPR013823Ribosomal protein L7/L12, C-terminalPFAMPF00542Ribosomal_L12coord: 148..213
score: 1.4
IPR014719Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-likeGENE3DG3DSA:3.30.1390.10coord: 142..213
score: 4.3
IPR014719Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-likeunknownSSF54736ClpS-likecoord: 147..213
score: 3.66
NoneNo IPR availableunknownCoilCoilcoord: 137..157
scor
NoneNo IPR availableGENE3DG3DSA:1.20.5.710coord: 83..125
score: 8.
NoneNo IPR availablePANTHERPTHR24089FAMILY NOT NAMEDcoord: 44..214
score: 3.3
NoneNo IPR availablePANTHERPTHR24089:SF38750S RIBOSOMAL PROTEIN L7/L12-RELATEDcoord: 44..214
score: 3.3