CSPI01G10090 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G10090
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
Description50S ribosomal protein L7/L12, putative
LocationChr1 : 6298875 .. 6299519 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGCTTAGTTTCAAGAATAAGTCATCTTCTACCCAATGTGTTTGCAAACACCATTCGCTCTTCTACAGTTGCCCTCAATCCTCTCAACAGAAATGGATTACATAGAAATTATGCTCAACCTTCTCGGATAGAGGAGGAAGAGGAGGAGGTGGAAATTGATCAGAGAAGGCTTCCAGCTGACTACGATCCTGCTAATTTTGATCCAACAGAGCATCGTAGTCCTCCAACCGATCGTGTTTTTAGGCTAGTGGATGAAATATCTGGACTCACATTAGTTGAAGTGGCTGAAATGTCTTCTATTTTGATGAAAAAATTGGGAATGACAGAGATGCCAGTTGCTGGATATATGAAACCAGGAGCTGTGGGGTTGGCTGGAATGGTGAAGAAGGGGTCATCAGCAACTGCCAAGGAGGAGAAGAAAGCAGAAAAGACTGTTTATGAGTTGAAACTAGAGTCTTACGAAGCGTCTGCGAAGATTAAAATTATCAAGGAGGTAAGAAGTCTCACTGATTTAGGTCTCAAAGAGGCAAAGGATTTAGTGGATAAAGCCCCATCGGTGTTGAAGAAGGGACTATCAAAGGAAGAGGGTGAACAAATAGTTGAAAAGATGAAAGCACTTGGTGCAAAAGTGATCTTGGAATGA

mRNA sequence

ATGCGCTTAGTTTCAAGAATAAGTCATCTTCTACCCAATGTGTTTGCAAACACCATTCGCTCTTCTACAGTTGCCCTCAATCCTCTCAACAGAAATGGATTACATAGAAATTATGCTCAACCTTCTCGGATAGAGGAGGAAGAGGAGGAGGTGGAAATTGATCAGAGAAGGCTTCCAGCTGACTACGATCCTGCTAATTTTGATCCAACAGAGCATCGTAGTCCTCCAACCGATCGTGTTTTTAGGCTAGTGGATGAAATATCTGGACTCACATTAGTTGAAGTGGCTGAAATGTCTTCTATTTTGATGAAAAAATTGGGAATGACAGAGATGCCAGTTGCTGGATATATGAAACCAGGAGCTGTGGGGTTGGCTGGAATGGTGAAGAAGGGGTCATCAGCAACTGCCAAGGAGGAGAAGAAAGCAGAAAAGACTGTTTATGAGTTGAAACTAGAGTCTTACGAAGCGTCTGCGAAGATTAAAATTATCAAGGAGGTAAGAAGTCTCACTGATTTAGGTCTCAAAGAGGCAAAGGATTTAGTGGATAAAGCCCCATCGGTGTTGAAGAAGGGACTATCAAAGGAAGAGGGTGAACAAATAGTTGAAAAGATGAAAGCACTTGGTGCAAAAGTGATCTTGGAATGA

Coding sequence (CDS)

ATGCGCTTAGTTTCAAGAATAAGTCATCTTCTACCCAATGTGTTTGCAAACACCATTCGCTCTTCTACAGTTGCCCTCAATCCTCTCAACAGAAATGGATTACATAGAAATTATGCTCAACCTTCTCGGATAGAGGAGGAAGAGGAGGAGGTGGAAATTGATCAGAGAAGGCTTCCAGCTGACTACGATCCTGCTAATTTTGATCCAACAGAGCATCGTAGTCCTCCAACCGATCGTGTTTTTAGGCTAGTGGATGAAATATCTGGACTCACATTAGTTGAAGTGGCTGAAATGTCTTCTATTTTGATGAAAAAATTGGGAATGACAGAGATGCCAGTTGCTGGATATATGAAACCAGGAGCTGTGGGGTTGGCTGGAATGGTGAAGAAGGGGTCATCAGCAACTGCCAAGGAGGAGAAGAAAGCAGAAAAGACTGTTTATGAGTTGAAACTAGAGTCTTACGAAGCGTCTGCGAAGATTAAAATTATCAAGGAGGTAAGAAGTCTCACTGATTTAGGTCTCAAAGAGGCAAAGGATTTAGTGGATAAAGCCCCATCGGTGTTGAAGAAGGGACTATCAAAGGAAGAGGGTGAACAAATAGTTGAAAAGATGAAAGCACTTGGTGCAAAAGTGATCTTGGAATGA
Homology
[Close]
BLAST of CSPI01G10090 vs. Swiss-Prot
Match: MNP1_SCHPO (54S ribosomal protein L12, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mrpl12 PE=3 SV=2)

HSP 1 Score: 92.8 bits (229), Expect = 4.9e-18
Identity = 57/136 (41.91%), Postives = 84/136 (61.76%), Query Frame = 1 

Query: 79  RVFRLVDEISGLTLVEVAEMSSILMKKLGMTEMPVAGYMKPGAVGLAGMVKKGSSATAKE 138
           ++  +VD+IS L+L+E +E+   L +KL + E+     + P     A   +K     A E
Sbjct: 43  QIGEMVDKISSLSLLETSELVKQLKEKLNIAEIAPMAAVAPAVASAAPSEEK-----APE 102

Query: 139 EKKAEKTVYELKLESYEASAKIKIIKEVRSLTDLGLKEAKDLVDKAPSVLKKGLSKEEGE 198
           EKK EKT + LKLES++A +K K+IKEV+SL  L L +AK  V+ AP VLK+ + KE+ E
Sbjct: 103 EKKEEKTTWNLKLESFDAGSKAKVIKEVKSLLGLSLVDAKKFVESAPKVLKENILKEDAE 162

Query: 199 QIVEKMKALGAKVILE 215
            I  K++ L  KV+LE
Sbjct: 163 AIKSKLEKLSCKVVLE 173

[Close]
BLAST of CSPI01G10090 vs. Swiss-Prot
Match: RL7_LIBAF (50S ribosomal protein L7/L12 OS=Liberibacter africanus GN=rplL PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 9.1e-17
Identity = 55/131 (41.98%), Postives = 84/131 (64.12%), Query Frame = 1 

Query: 83  LVDEISGLTLVEVAEMSSILMKKLGMTEMPVAGYMKPGAVGLAGMVKKGSSATAKEEKKA 142
           +V+++S LTL++ AE+S  L ++ G++       +   A         G SA A     A
Sbjct: 7   IVEKLSSLTLLQAAELSKRLEEEWGVSAAAPVAVVASAA---------GESAAAV----A 66

Query: 143 EKTVYELKLESYEASAKIKIIKEVRSLTDLGLKEAKDLVDKAPSVLKKGLSKEEGEQIVE 202
           EKT +E+ LE ++A  KI +IKEVR++T+LGLKEAKD V+ AP  LK G+SK+E E++ +
Sbjct: 67  EKTEFEVFLEGFDAKKKISVIKEVRAITELGLKEAKDFVESAPKSLKTGVSKDEAEELKK 124

Query: 203 KMKALGAKVIL 214
           K++A GA +IL
Sbjct: 127 KLEAAGATIIL 124

[Close]
BLAST of CSPI01G10090 vs. Swiss-Prot
Match: MNP1_YEAST (54S ribosomal protein L12, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MNP1 PE=1 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.7e-15
Identity = 58/146 (39.73%), Postives = 89/146 (60.96%), Query Frame = 1 

Query: 75  PPTDRVFRLVDEISGLTLVEVAEMSSILMKKLGMTE--MPVAGYMKPGAVGLAGMVKKGS 134
           P   ++ ++V +IS LTL+E + + + L   L + E  MP+ G+M   A   AG V   +
Sbjct: 49  PVDPKISKIVQDISQLTLLETSSLINELKTVLNIPEISMPMGGFMAGAAGAGAGNVPSST 108

Query: 135 SAT---AKEEKKAE-KTVYELKLESYEASAKIKIIKEVRSLTDLGLKEAKDLVDKAPSVL 194
                 A+EE K E KTV+ +KL+S++   K K+IKEV+ L  L L EAK  V+ AP VL
Sbjct: 109 GEAGSGAEEEAKPEAKTVFTVKLDSFDTKTKAKVIKEVKGLLGLSLVEAKKFVEAAPKVL 168

Query: 195 KKGLSKEEGEQIVEKMKALGAKVILE 215
           K+ ++K++ E+I + ++ LGAKV LE
Sbjct: 169 KENVAKDDAEKIKKTLEDLGAKVSLE 194

[Close]
BLAST of CSPI01G10090 vs. Swiss-Prot
Match: RL7_BRASB (50S ribosomal protein L7/L12 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=rplL PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 3.8e-15
Identity = 53/133 (39.85%), Postives = 84/133 (63.16%), Query Frame = 1 

Query: 82  RLVDEISGLTLVEVAEMSSILMKKLGMTEMPVAGYMKPGAVGLAGMVKKGSSATAKEEKK 141
           ++VD++S LT++E AE++ +L +K G++         PGA         G +A A  E+K
Sbjct: 6   KIVDDLSALTVLEAAELAKLLEEKWGVSAAAAVAVAAPGA---------GGAAAAPAEEK 65

Query: 142 AEKTVYELKLESYEASAKIKIIKEVRSLTDLGLKEAKDLVDKAPSVLKKGLSKEEGEQIV 201
            E TV    + +     KI++IKEVR++T LGLKEAKDLV+ AP  +K+G++K+E E+I 
Sbjct: 66  TEFTV----VLASAGDKKIEVIKEVRAITGLGLKEAKDLVEGAPKPVKEGVNKDEAEKIK 125

Query: 202 EKMKALGAKVILE 215
            +++  GAKV L+
Sbjct: 126 GQLEKAGAKVELK 125

[Close]
BLAST of CSPI01G10090 vs. Swiss-Prot
Match: RL7_BRUO2 (50S ribosomal protein L7/L12 OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=rplL PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 3.8e-15
Identity = 58/133 (43.61%), Postives = 88/133 (66.17%), Query Frame = 1 

Query: 82  RLVDEISGLTLVEVAEMSSILMKKLGMTEMPVAGYMKPGAVGLAGMVKKGSSATAKEEKK 141
           ++V+++S LT++E AE+S +L +K G++         P AV  AG    G++  A  E  
Sbjct: 6   KIVEDLSALTVLEAAELSKLLEEKWGVSAAA------PVAVAAAG----GAAPAAAAE-- 65

Query: 142 AEKTVYELKLESYEASAKIKIIKEVRSLTDLGLKEAKDLVDKAPSVLKKGLSKEEGEQIV 201
            EKT +++ L    A+ KI +IKEVR+LT LGLKEAKDLV+ AP  +K+G+SK+E E+I 
Sbjct: 66  -EKTEFDVVLADGGAN-KINVIKEVRALTGLGLKEAKDLVEGAPKAVKEGVSKDEAEKIK 124

Query: 202 EKMKALGAKVILE 215
            +++A GAKV L+
Sbjct: 126 AQLEAAGAKVELK 124

[Close]
BLAST of CSPI01G10090 vs. TrEMBL
Match: A0A0A0LU08_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G057000 PE=3 SV=1)

HSP 1 Score: 396.0 bits (1016), Expect = 3.0e-107
Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 1 

Query: 1   MRLVSRISHLLPNVFANTIRSSTVALNPLNRNGLHRNYAQPSRIEEEEEEVEIDQRRLPA 60
           MRLVSRISHLLPNVFANTIRSSTVALNPLNRNGLHRNYAQPSRIEEEEEEVEIDQRRLPA
Sbjct: 1   MRLVSRISHLLPNVFANTIRSSTVALNPLNRNGLHRNYAQPSRIEEEEEEVEIDQRRLPA 60

Query: 61  DYDPANFDPTEHRSPPTDRVFRLVDEISGLTLVEVAEMSSILMKKLGMTEMPVAGYMKPG 120
           DYDPANFDPTEHRSPPTDRVFRLVDEISGLTLVEVAEMSSILMKKLGMTEMPVAGYMKPG
Sbjct: 61  DYDPANFDPTEHRSPPTDRVFRLVDEISGLTLVEVAEMSSILMKKLGMTEMPVAGYMKPG 120

Query: 121 AVGLAGMVKKGSSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSLTDLGLKEAKDL 180
           AVGLAGMVKKGSSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSLTDLGLKEAKDL
Sbjct: 121 AVGLAGMVKKGSSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSLTDLGLKEAKDL 180

Query: 181 VDKAPSVLKKGLSKEEGEQIVEKMKALGAKVILE 215
           VDKAPSVLKKGLSKEEGEQIVEKMKALGAKVILE
Sbjct: 181 VDKAPSVLKKGLSKEEGEQIVEKMKALGAKVILE 214

[Close]
BLAST of CSPI01G10090 vs. TrEMBL
Match: W9S8M4_9ROSA (50S ribosomal protein OS=Morus notabilis GN=L484_005958 PE=3 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 1.3e-73
Identity = 157/216 (72.69%), Postives = 177/216 (81.94%), Query Frame = 1 

Query: 1   MRLVSRISHLLPNVF-ANTIRSSTVALNPLNRNGLHRNYAQPSRIEEEEEEVEIDQRRLP 60
           M LV R+ H LPN F     RS+ VALNP N NGL +NY QP+  EEE+EEVE DQRRLP
Sbjct: 1   MSLVLRLKHHLPNGFYRKPFRSTVVALNPGNINGLWKNYGQPAIKEEEDEEVEFDQRRLP 60

Query: 61  ADYDPANFDPTEHRSPPTDRVFRLVDEISGLTLVEVAEMSSILMKKLGMTEMPVAGYMKP 120
            DYDPA FDP+EHRSPPT+RVFRLVDEISGLTL EVAE+ +I M+K GMTE P  G MKP
Sbjct: 61  TDYDPATFDPSEHRSPPTERVFRLVDEISGLTLAEVAELGAIFMRKRGMTEPPSVGVMKP 120

Query: 121 GAVGLAGMVKKGSSAT-AKEEKKAEKTVYELKLESYEASAKIKIIKEVRSLTDLGLKEAK 180
           GA GLAGM     +AT AKEEKK EKTV+ELKLESYEA++KIK+IKEVRS TDLGLKEAK
Sbjct: 121 GAAGLAGMALATKAATAAKEEKKPEKTVFELKLESYEAASKIKLIKEVRSFTDLGLKEAK 180

Query: 181 DLVDKAPSVLKKGLSKEEGEQIVEKMKALGAKVILE 215
           DLV+K PS+LKKGLSKEEGEQ+VEK+K LGAKV+LE
Sbjct: 181 DLVEKTPSILKKGLSKEEGEQLVEKLKELGAKVVLE 216

[Close]
BLAST of CSPI01G10090 vs. TrEMBL
Match: M5WHF2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011350mg PE=3 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 1.3e-70
Identity = 156/216 (72.22%), Postives = 179/216 (82.87%), Query Frame = 1 

Query: 1   MRLVSRISHLLPNVFANT-IRSSTVALNPLNRNGLHRNYAQPSRI-EEEEEEVEIDQRRL 60
           M LV R+   LPN F    + S   ALNP + NG  +N++QP+R  EEEEEEVEIDQRRL
Sbjct: 1   MSLVLRLRQHLPNGFCRRPLISPLAALNPGSLNGFCQNFSQPARKEEEEEEEVEIDQRRL 60

Query: 61  PADYDPANFDPTEHRSPPTDRVFRLVDEISGLTLVEVAEMSSILMKKLGMTEMPVAGYMK 120
           PADYDPA FDPTEHRSPPTDRVFRLVDEIS LTL EVAE+ SI+M+K GM E P+ G MK
Sbjct: 61  PADYDPATFDPTEHRSPPTDRVFRLVDEISSLTLAEVAELGSIMMRKKGMKEPPIVGVMK 120

Query: 121 PGAVGLAGMVKKGSSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSLTDLGLKEAK 180
           PGA GL G+  KG +A AKEEKK EKTV+ELKLES+EA++KIK+IKEVRS TDLGLKEAK
Sbjct: 121 PGAAGL-GLAMKGPAA-AKEEKKPEKTVFELKLESFEAASKIKLIKEVRSFTDLGLKEAK 180

Query: 181 DLVDKAPSVLKKGLSKEEGEQIVEKMKALGAKVILE 215
           DLV+KAPSVLKKGLSKEEGEQ++EK+KALGAKV+LE
Sbjct: 181 DLVEKAPSVLKKGLSKEEGEQLIEKLKALGAKVVLE 214

[Close]
BLAST of CSPI01G10090 vs. TrEMBL
Match: A0A061DXQ8_THECC (Ribosomal protein L7/L12 isoform 1 OS=Theobroma cacao GN=TCM_006020 PE=3 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 2.9e-70
Identity = 156/221 (70.59%), Postives = 179/221 (81.00%), Query Frame = 1 

Query: 1   MRLVSRISHLLPNVF--ANTIRSSTVALNPLNRNGLHRNYAQPSRIEEE--EEEVEIDQR 60
           M LV R+ H L + F       S  V LN  + N L RN++QP++ E+E  EEEVEIDQR
Sbjct: 1   MSLVLRLRHHLHSGFFCRKPFESQIVTLNAFSSNRLSRNFSQPAKQEQEDEEEEVEIDQR 60

Query: 61  RLPADYDPANFDPTEHRSPPTDRVFRLVDEISGLTLVEVAEMSSILMKKLGMTEMPVAGY 120
           RLPADYDP+NFDPTEHRSPPT+RV+RLVDEISGLTL E+AE+ SI+MKK GMTE P  G 
Sbjct: 61  RLPADYDPSNFDPTEHRSPPTERVWRLVDEISGLTLSEIAELGSIIMKKRGMTEPPTVGV 120

Query: 121 MKPGAV-GLAGMVKK--GSSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSLTDLG 180
           MK GA  GLAGM KK  G  A AKEEKKAEKTV+ELKLESYEA++KIKIIKEVRS TDLG
Sbjct: 121 MKAGAAAGLAGMAKKAAGGGAAAKEEKKAEKTVFELKLESYEAASKIKIIKEVRSFTDLG 180

Query: 181 LKEAKDLVDKAPSVLKKGLSKEEGEQIVEKMKALGAKVILE 215
           LKEAKDLV+K P+VLKKG+SKEEGEQ++EKMKALGAKV+LE
Sbjct: 181 LKEAKDLVEKTPAVLKKGVSKEEGEQLIEKMKALGAKVVLE 221

[Close]
BLAST of CSPI01G10090 vs. TrEMBL
Match: A0A061DWT8_THECC (Ribosomal protein L7/L12 isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_006020 PE=3 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 3.2e-69
Identity = 149/199 (74.87%), Postives = 170/199 (85.43%), Query Frame = 1 

Query: 21  SSTVALNPLNRNGLHRNYAQPSRIEEE--EEEVEIDQRRLPADYDPANFDPTEHRSPPTD 80
           S  V LN  + N L RN++QP++ E+E  EEEVEIDQRRLPADYDP+NFDPTEHRSPPT+
Sbjct: 36  SQIVTLNAFSSNRLSRNFSQPAKQEQEDEEEEVEIDQRRLPADYDPSNFDPTEHRSPPTE 95

Query: 81  RVFRLVDEISGLTLVEVAEMSSILMKKLGMTEMPVAGYMKPGAV-GLAGMVKK--GSSAT 140
           RV+RLVDEISGLTL E+AE+ SI+MKK GMTE P  G MK GA  GLAGM KK  G  A 
Sbjct: 96  RVWRLVDEISGLTLSEIAELGSIIMKKRGMTEPPTVGVMKAGAAAGLAGMAKKAAGGGAA 155

Query: 141 AKEEKKAEKTVYELKLESYEASAKIKIIKEVRSLTDLGLKEAKDLVDKAPSVLKKGLSKE 200
           AKEEKKAEKTV+ELKLESYEA++KIKIIKEVRS TDLGLKEAKDLV+K P+VLKKG+SKE
Sbjct: 156 AKEEKKAEKTVFELKLESYEAASKIKIIKEVRSFTDLGLKEAKDLVEKTPAVLKKGVSKE 215

Query: 201 EGEQIVEKMKALGAKVILE 215
           EGEQ++EKMKALGAKV+LE
Sbjct: 216 EGEQLIEKMKALGAKVVLE 234

[Close]
BLAST of CSPI01G10090 vs. TAIR10
Match: AT1G70190.1 (AT1G70190.1 Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like)

HSP 1 Score: 239.6 bits (610), Expect = 1.8e-63
Identity = 132/203 (65.02%), Postives = 162/203 (79.80%), Query Frame = 1 

Query: 15  FANTIRSSTVALNPLNRNGLHRNYAQPSRIEEEEEEVEIDQRRLPADYDPANFDPTEHRS 74
           F   +  ++  L+ L+R G +R+Y QP++IE+EEEE E DQR+LP DYDPA FDPTEHRS
Sbjct: 7   FRQHLSQTSSRLSLLSRIGGYRSYTQPAKIEDEEEE-EFDQRKLPTDYDPATFDPTEHRS 66

Query: 75  PPTDRVFRLVDEISGLTLVEVAEMSSILMKKLGMTEMPVAGYMKPGA---VGLAGMVKKG 134
           PPTDRVFRLVDEIS LTL+E++E+ SI+MKK GMTE+P    MKPGA   VG+ G     
Sbjct: 67  PPTDRVFRLVDEISSLTLLEISELGSIIMKKKGMTELPTVAVMKPGAGGGVGVGGGGGMV 126

Query: 135 SSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSLTDLGLKEAKDLVDKAPSVLKKG 194
           S +   EE K EKTV+E+KLES+EASAKIKIIKE+RS TDLGLKEAK LV+K P++LK G
Sbjct: 127 SQSGVSEEAKVEKTVFEIKLESFEASAKIKIIKELRSFTDLGLKEAKALVEKTPAILKAG 186

Query: 195 LSKEEGEQIVEKMKALGAKVILE 215
           LSKEEGE+I+EK+KALGAKV+LE
Sbjct: 187 LSKEEGEKILEKLKALGAKVVLE 208

[Close]
BLAST of CSPI01G10090 vs. TAIR10
Match: AT4G36420.1 (AT4G36420.1 Ribosomal protein L12 family protein)

HSP 1 Score: 132.5 bits (332), Expect = 3.1e-31
Identity = 72/145 (49.66%), Postives = 107/145 (73.79%), Query Frame = 1 

Query: 72  HRSPPT--DRVFRLVDEISGLTLVEVAEMSSILMKKLGMTEMPVAGYMKPGAVGLAGMVK 131
           + SP T  + V ++V+E+S LTL+E  +++ IL +KL ++E+PV   M PG         
Sbjct: 35  YSSPATQSENVSKIVNELSNLTLLETMDLTEILRQKLNISELPVMAAMMPGMSLPGSGAS 94

Query: 132 KGSSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSLTDLGLKEAKDLVDKAPSVLK 191
           K +    KE+KK  KT +++ L++Y+A +KIK+IKEVR++T LGLKEAKDLV+KAP++LK
Sbjct: 95  KSAGGEGKEKKKEAKTAFDVMLQAYDAVSKIKVIKEVRTITALGLKEAKDLVEKAPTLLK 154

Query: 192 KGLSKEEGEQIVEKMKALGAKVILE 215
           KG+SKEE E+I+EK+KA+GAKV +E
Sbjct: 155 KGVSKEEAEKIIEKLKAVGAKVAME 179

[Close]
BLAST of CSPI01G10090 vs. TAIR10
Match: AT4G37660.1 (AT4G37660.1 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein)

HSP 1 Score: 107.1 bits (266), Expect = 1.4e-23
Identity = 63/138 (45.65%), Postives = 94/138 (68.12%), Query Frame = 1 

Query: 77  TDRVFRLVDEISGLTLVEVAEMSSILMKKLGMTEMPVAGYMKPGAVGLAGMVKKGSSATA 136
           T ++ R+ D++  L  +E+ + S +   K+G+            AV + G V   S++T 
Sbjct: 39  TKKLERIADDLLKLNRIELYDYSLLFSHKIGLNRYG-------SAVAVTGSVGDASAST- 98

Query: 137 KEEKKAEKTVYELKLESYEASAKIKIIKEVRSLTDLGLKEAKDLVDKAPSVLKKGLSKEE 196
            E K AEKT +++KLE +EA++KIK+IKE+R+ TDLGLKEAK LV+KAP ++K GL+KEE
Sbjct: 99  -ETKTAEKTTFDVKLEKFEAASKIKVIKEIRAFTDLGLKEAKALVEKAPVIVKNGLTKEE 158

Query: 197 GEQIVEKMKALGAKVILE 215
            E+I+EK+KA+GA V LE
Sbjct: 159 AEKIMEKLKAVGAIVALE 167

[Close]
BLAST of CSPI01G10090 vs. TAIR10
Match: AT2G03130.1 (AT2G03130.1 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein)

HSP 1 Score: 98.6 bits (244), Expect = 5.0e-21
Identity = 55/83 (66.27%), Postives = 67/83 (80.72%), Query Frame = 1 

Query: 132 SSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSLTDLGLKEAKDLVDKAPSVLKKG 191
           S   A E  KAEKTV+E+KLES+EA AKIKIIKEVR +  +GLKEA  LV KAP+VLK G
Sbjct: 9   SGGGANEGAKAEKTVFEVKLESFEARAKIKIIKEVRRIIGVGLKEAMKLVVKAPTVLKTG 68

Query: 192 LSKEEGEQIVEKMKALGAKVILE 215
           LSKEEGE++VEK+ ALGA+ +L+
Sbjct: 69  LSKEEGEEVVEKLNALGAEAVLQ 91

[Close]
BLAST of CSPI01G10090 vs. TAIR10
Match: AT3G06040.1 (AT3G06040.1 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein)

HSP 1 Score: 96.7 bits (239), Expect = 1.9e-20
Identity = 55/151 (36.42%), Postives = 92/151 (60.93%), Query Frame = 1 

Query: 64  PANFDPTEHRSPPTDRVFRLVDEISGLTLVEVAEMSSILMKKLGMTEMPVAGYMKPGAVG 123
           P+ +DP   R  P+ ++  L + I+ L+  E  ++   L + L + +  +        + 
Sbjct: 44  PSVYDPYGPRPQPSSKIMELAERIAALSPEERKQIGPALNEHLRLPKQQM--------IS 103

Query: 124 LAGMVKKGSSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSLTDLGLKEAKDLVDK 183
             G+  K  +     E+K EKT +++KLE + AS KIK+IKEVR+ T LGLKEAK+LV+K
Sbjct: 104 SDGIGAKQDTGAGNVEEKKEKTAFDVKLEKFNASDKIKVIKEVRTFTSLGLKEAKELVEK 163

Query: 184 APSVLKKGLSKEEGEQIVEKMKALGAKVILE 215
            P++LK+G++KEE  +I+ K+KA+G   ++E
Sbjct: 164 VPAILKQGVTKEEANEIIAKIKAVGGIAVME 186

[Close]
BLAST of CSPI01G10090 vs. NCBI nr
Match: gi|449454776|ref|XP_004145130.1| (PREDICTED: 54S ribosomal protein L12, mitochondrial [Cucumis sativus])

HSP 1 Score: 396.0 bits (1016), Expect = 4.3e-107
Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 1 

Query: 1   MRLVSRISHLLPNVFANTIRSSTVALNPLNRNGLHRNYAQPSRIEEEEEEVEIDQRRLPA 60
           MRLVSRISHLLPNVFANTIRSSTVALNPLNRNGLHRNYAQPSRIEEEEEEVEIDQRRLPA
Sbjct: 1   MRLVSRISHLLPNVFANTIRSSTVALNPLNRNGLHRNYAQPSRIEEEEEEVEIDQRRLPA 60

Query: 61  DYDPANFDPTEHRSPPTDRVFRLVDEISGLTLVEVAEMSSILMKKLGMTEMPVAGYMKPG 120
           DYDPANFDPTEHRSPPTDRVFRLVDEISGLTLVEVAEMSSILMKKLGMTEMPVAGYMKPG
Sbjct: 61  DYDPANFDPTEHRSPPTDRVFRLVDEISGLTLVEVAEMSSILMKKLGMTEMPVAGYMKPG 120

Query: 121 AVGLAGMVKKGSSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSLTDLGLKEAKDL 180
           AVGLAGMVKKGSSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSLTDLGLKEAKDL
Sbjct: 121 AVGLAGMVKKGSSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSLTDLGLKEAKDL 180

Query: 181 VDKAPSVLKKGLSKEEGEQIVEKMKALGAKVILE 215
           VDKAPSVLKKGLSKEEGEQIVEKMKALGAKVILE
Sbjct: 181 VDKAPSVLKKGLSKEEGEQIVEKMKALGAKVILE 214

[Close]
BLAST of CSPI01G10090 vs. NCBI nr
Match: gi|659067613|ref|XP_008440389.1| (PREDICTED: 54S ribosomal protein L12, mitochondrial [Cucumis melo])

HSP 1 Score: 389.8 bits (1000), Expect = 3.1e-105
Identity = 210/214 (98.13%), Postives = 213/214 (99.53%), Query Frame = 1 

Query: 1   MRLVSRISHLLPNVFANTIRSSTVALNPLNRNGLHRNYAQPSRIEEEEEEVEIDQRRLPA 60
           MRLVSRISHLLPNVFANTIRSSTVALNPLNRNG+HRNYAQPSRIEEEEEEVEIDQRRLPA
Sbjct: 1   MRLVSRISHLLPNVFANTIRSSTVALNPLNRNGVHRNYAQPSRIEEEEEEVEIDQRRLPA 60

Query: 61  DYDPANFDPTEHRSPPTDRVFRLVDEISGLTLVEVAEMSSILMKKLGMTEMPVAGYMKPG 120
           DYDPANFDPTEHRSPPTDRVFRLVDEISGLTLVEVAE+SSILMKKLGMTEMPVAGYMKPG
Sbjct: 61  DYDPANFDPTEHRSPPTDRVFRLVDEISGLTLVEVAELSSILMKKLGMTEMPVAGYMKPG 120

Query: 121 AVGLAGMVKKGSSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSLTDLGLKEAKDL 180
           AVGLAGMVKK SSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSLTDLGLKEAKDL
Sbjct: 121 AVGLAGMVKKVSSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSLTDLGLKEAKDL 180

Query: 181 VDKAPSVLKKGLSKEEGEQIVEKMKALGAKVILE 215
           VDKAPSVLKKGLSKEEGEQI+EKMKALGAKVILE
Sbjct: 181 VDKAPSVLKKGLSKEEGEQIIEKMKALGAKVILE 214

[Close]
BLAST of CSPI01G10090 vs. NCBI nr
Match: gi|703123768|ref|XP_010102896.1| (50S ribosomal protein [Morus notabilis])

HSP 1 Score: 284.3 bits (726), Expect = 1.8e-73
Identity = 157/216 (72.69%), Postives = 177/216 (81.94%), Query Frame = 1 

Query: 1   MRLVSRISHLLPNVF-ANTIRSSTVALNPLNRNGLHRNYAQPSRIEEEEEEVEIDQRRLP 60
           M LV R+ H LPN F     RS+ VALNP N NGL +NY QP+  EEE+EEVE DQRRLP
Sbjct: 1   MSLVLRLKHHLPNGFYRKPFRSTVVALNPGNINGLWKNYGQPAIKEEEDEEVEFDQRRLP 60

Query: 61  ADYDPANFDPTEHRSPPTDRVFRLVDEISGLTLVEVAEMSSILMKKLGMTEMPVAGYMKP 120
            DYDPA FDP+EHRSPPT+RVFRLVDEISGLTL EVAE+ +I M+K GMTE P  G MKP
Sbjct: 61  TDYDPATFDPSEHRSPPTERVFRLVDEISGLTLAEVAELGAIFMRKRGMTEPPSVGVMKP 120

Query: 121 GAVGLAGMVKKGSSAT-AKEEKKAEKTVYELKLESYEASAKIKIIKEVRSLTDLGLKEAK 180
           GA GLAGM     +AT AKEEKK EKTV+ELKLESYEA++KIK+IKEVRS TDLGLKEAK
Sbjct: 121 GAAGLAGMALATKAATAAKEEKKPEKTVFELKLESYEAASKIKLIKEVRSFTDLGLKEAK 180

Query: 181 DLVDKAPSVLKKGLSKEEGEQIVEKMKALGAKVILE 215
           DLV+K PS+LKKGLSKEEGEQ+VEK+K LGAKV+LE
Sbjct: 181 DLVEKTPSILKKGLSKEEGEQLVEKLKELGAKVVLE 216

[Close]
BLAST of CSPI01G10090 vs. NCBI nr
Match: gi|694326126|ref|XP_009353984.1| (PREDICTED: 50S ribosomal protein L12, cyanelle-like [Pyrus x bretschneideri])

HSP 1 Score: 278.1 bits (710), Expect = 1.3e-71
Identity = 158/216 (73.15%), Postives = 180/216 (83.33%), Query Frame = 1 

Query: 1   MRLVSRISHLLPN-VFANTIRSSTVALNPLNRNGLHRNYAQPSRI-EEEEEEVEIDQRRL 60
           M L+ R+ + LPN +    + SS  ALNP + NG  RN+ QP+R  EEEEEEV+IDQRRL
Sbjct: 1   MSLILRLRNHLPNGLCRRPLISSLGALNPGSLNGFCRNFGQPARREEEEEEEVDIDQRRL 60

Query: 61  PADYDPANFDPTEHRSPPTDRVFRLVDEISGLTLVEVAEMSSILMKKLGMTEMPVAGYMK 120
           PADYDPA FDPTEHRSPPTDRVFRLVDEIS LTLVEVAE+ SILM+K GMTE PV G MK
Sbjct: 61  PADYDPATFDPTEHRSPPTDRVFRLVDEISSLTLVEVAELGSILMRKKGMTEPPVVGVMK 120

Query: 121 PGAVGLAGMVKKGSSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSLTDLGLKEAK 180
           PGA GL G+  KG S+ AKEEKK EKTV+ELKLES+EA++KIK+IKEVRS TDLGLKEAK
Sbjct: 121 PGAAGL-GLAMKGPSSAAKEEKKPEKTVFELKLESFEAASKIKLIKEVRSFTDLGLKEAK 180

Query: 181 DLVDKAPSVLKKGLSKEEGEQIVEKMKALGAKVILE 215
           DLV+KAPSVLK G+SKEEGEQ+VEK+KALGAKV LE
Sbjct: 181 DLVEKAPSVLKTGVSKEEGEQLVEKLKALGAKVSLE 215

[Close]
BLAST of CSPI01G10090 vs. NCBI nr
Match: gi|694425094|ref|XP_009340300.1| (PREDICTED: 50S ribosomal protein L12, cyanelle-like [Pyrus x bretschneideri])

HSP 1 Score: 274.6 bits (701), Expect = 1.4e-70
Identity = 157/216 (72.69%), Postives = 178/216 (82.41%), Query Frame = 1 

Query: 1   MRLVSRISHLLPN-VFANTIRSSTVALNPLNRNGLHRNYAQPSRI-EEEEEEVEIDQRRL 60
           M L+ R+ + LPN +    + SS   LN  + NG  RN+ QP+R  EEEEEEVEIDQRRL
Sbjct: 1   MSLILRLRNHLPNGLCRRPLISSLGGLNTGSLNGFCRNFGQPARREEEEEEEVEIDQRRL 60

Query: 61  PADYDPANFDPTEHRSPPTDRVFRLVDEISGLTLVEVAEMSSILMKKLGMTEMPVAGYMK 120
           PADYDPA FDPTEHRSPPTDRVFRLVDEIS LTLVEVAE+ SILM+K GMTE PV G MK
Sbjct: 61  PADYDPATFDPTEHRSPPTDRVFRLVDEISSLTLVEVAELGSILMRKKGMTEPPVVGVMK 120

Query: 121 PGAVGLAGMVKKGSSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSLTDLGLKEAK 180
           PGA GL G+  KG S+ AKEEKK EKTV+ELKLES+EA++KIK+IKEVRS TDLGLKEAK
Sbjct: 121 PGAAGL-GLAMKGPSSAAKEEKKPEKTVFELKLESFEAASKIKLIKEVRSFTDLGLKEAK 180

Query: 181 DLVDKAPSVLKKGLSKEEGEQIVEKMKALGAKVILE 215
           DLV+KAPSVLK G+SKEEGEQ+VEK+KALGAKV LE
Sbjct: 181 DLVEKAPSVLKTGVSKEEGEQLVEKLKALGAKVSLE 215

The following BLAST results are available for this feature:
BLAST of CSPI01G10090 vs. Swiss-Prot
Match NameE-valueIdentityDescription
MNP1_SCHPO4.9e-1841.9154S ribosomal protein L12, mitochondrial OS=Schizosaccharomyces pombe (strain 97... [more]
RL7_LIBAF9.1e-1741.9850S ribosomal protein L7/L12 OS=Liberibacter africanus GN=rplL PE=3 SV=1[more]
MNP1_YEAST1.7e-1539.7354S ribosomal protein L12, mitochondrial OS=Saccharomyces cerevisiae (strain ATC... [more]
RL7_BRASB3.8e-1539.8550S ribosomal protein L7/L12 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182... [more]
RL7_BRUO23.8e-1543.6150S ribosomal protein L7/L12 OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC... [more]
BLAST of CSPI01G10090 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LU08_CUCSA3.0e-107100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G057000 PE=3 SV=1[more]
W9S8M4_9ROSA1.3e-7372.6950S ribosomal protein OS=Morus notabilis GN=L484_005958 PE=3 SV=1[more]
M5WHF2_PRUPE1.3e-7072.22Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011350mg PE=3 SV=1[more]
A0A061DXQ8_THECC2.9e-7070.59Ribosomal protein L7/L12 isoform 1 OS=Theobroma cacao GN=TCM_006020 PE=3 SV=1[more]
A0A061DWT8_THECC3.2e-6974.87Ribosomal protein L7/L12 isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_006020 P... [more]
BLAST of CSPI01G10090 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G70190.11.8e-6365.02 Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, ... [more]
AT4G36420.13.1e-3149.66 Ribosomal protein L12 family protein[more]
AT4G37660.11.4e-2345.65 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein Cl... [more]
AT2G03130.15.0e-2166.27 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein Cl... [more]
AT3G06040.11.9e-2036.42 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein Cl... [more]
BLAST of CSPI01G10090 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449454776|ref|XP_004145130.1|4.3e-107100.00PREDICTED: 54S ribosomal protein L12, mitochondrial [Cucumis sativus][more]
gi|659067613|ref|XP_008440389.1|3.1e-10598.13PREDICTED: 54S ribosomal protein L12, mitochondrial [Cucumis melo][more]
gi|703123768|ref|XP_010102896.1|1.8e-7372.6950S ribosomal protein [Morus notabilis][more]
gi|694326126|ref|XP_009353984.1|1.3e-7173.15PREDICTED: 50S ribosomal protein L12, cyanelle-like [Pyrus x bretschneideri][more]
gi|694425094|ref|XP_009340300.1|1.4e-7072.69PREDICTED: 50S ribosomal protein L12, cyanelle-like [Pyrus x bretschneideri][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000206Ribosomal_L7/12
IPR008932Ribosomal_L7/L12_oligo
IPR013823Ribosomal_L7/L12_C
IPR014719Ribosomal_L7/12_C/ClpS-like
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0006354 DNA-templated transcription, elongation
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G10090.1CSPI01G10090.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000206Ribosomal protein L7/L12HAMAPMF_00368Ribosomal_L7_L12coord: 77..214
score: 17
IPR008932Ribosomal protein L7/L12, oligomerisationPFAMPF16320Ribosomal_L12_Ncoord: 83..122
score: 1.
IPR008932Ribosomal protein L7/L12, oligomerisationunknownSSF48300Ribosomal protein L7/12, oligomerisation (N-terminal) domaincoord: 82..123
score: 1.0
IPR013823Ribosomal protein L7/L12, C-terminalPRODOMPD001326coord: 151..213
score: 9.0
IPR013823Ribosomal protein L7/L12, C-terminalPFAMPF00542Ribosomal_L12coord: 148..213
score: 3.3
IPR014719Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-likeGENE3DG3DSA:3.30.1390.10coord: 142..213
score: 1.3
IPR014719Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-likeunknownSSF54736ClpS-likecoord: 147..213
score: 3.14
NoneNo IPR availableunknownCoilCoilcoord: 137..157
scor
NoneNo IPR availablePANTHERPTHR24089FAMILY NOT NAMEDcoord: 44..214
score: 2.3
NoneNo IPR availablePANTHERPTHR24089:SF38750S RIBOSOMAL PROTEIN L7/L12-RELATEDcoord: 44..214
score: 2.3