BhiUN316G60 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	BhiUN316G60
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	50s ribosomal protein l7/l12
Location	Contig316 : 832012 .. 834135 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTGGTATTATTGTTTTTTATTTCTTTTTTGGAGAAACGAATTGGGAGCCCTAATTTCCCATTGCCATTGATCTGCAGCACTGTATCTCTGAAGCTCACTCACCTCCATTTCTGGACGAGATTGAAGCTTCTTCAGCCATTATCATCGGTAATCCACCAATCCTCACGGCGCACTTCAAACCACCACATTCCCTGCCTTAGCGCCTATTTCTCATCTCATAGCGTAAGTTTTCATATTTTTGTGCTTTCTGCAACTCTGTTATTCCATTAGTGTTTCGATATATTGGTCTTCGATAAAGTCTTTTTTTGATGTTTTGTTTGAAGTCGACGTTGGGAAAGATCAGTTGTTTGAGTGGACTATTTGATTTATCACACTATAGGTTAACTGTCTTGGTTGAGAAACATGGCATTACTCGGTTTCGGTTTGCTTGTTGTACTATGATTAGCTTTGATTTGTAATCGTCTAATTCTTCGAATCTGGTAGTGTAGAAACAAGGGTTCTGCTATGAATTTGACCATTAGTGTTTTCTTCGTATAGGAATGCGGACTTATGAGTTCGTTATAAACAGTAATATTTGCCTTATTATGCCTGTGAGCTGACGACTAAGTTCTATAAATTTATATAGATAGCTTAAAATGGGGCTTATTAAAGAGTGTGAAGGTTGATGTCAAAATTTTTGTAGTGAAGTTTCTCTCGTCATTTTTTCTGGATAATCTGTATTGAAAATTTTACTTGTATCTGAAGGCCTAAATGAAAACTAATTACTTGTTCTCTTGATTCCCCACGGCACTCCTTTGAATAAAAGATAAAACCTACCTAGAGTCGCATGTTCGATTTTTGGGTAAGCTTGATGAAGAAAAGCCTCAAGTCGGGGGATTGGGGACCCGGGGTGAGCATGGACTTTGATGGGGGTGGAAAAAAAGGAGAAAGAAATACTTGTCTTCTTGACTGGCATCTAGTCTATAGTTCATTGTTCTCGATAGGTGTTAATAATGTCAATTAGTTTGTTGACTTAGTTTTTCTTTTCTATCCAGGCCACTGACTTGCCCTTCTGAAAGCCAAAAATGGGTTTGAACTAAATAGCTTGCTACCTCAAGGGGGAAGTTAATTTGGCAACTTGAGAAATGCACTTAGTTTTAAGAATAAGGCATCTCCTACCCAATGTGTTTGCAAACACCATTCGCTCTCCTGCAGTTGCCCTCAATCCTCTCAACATAAATGGATTACATAGAAATTATGCTCAACCTGCTCGGATAGAGGATGAAGAGGAAGAGTTGGAAATTGACCAGAGAAGGCTTCCAGCTGATTACGATCCTGCTAATTTTGATCCAACACAGCATCGTAGTCCTCCAACTGATCGTGTTTTTAGGCTTGTAGATGAAATATCTGGACTTACATTAGTTGAAGTTGCTGAATTATCTTCCATTTTGAGGAAAAAGTTAGGAATGACAGACATGCCAGTTGTTGGAGTTATGAAACCAGGAGCTGCCGGATTGGCTGGAATGGCAATGAAAGCATCATCATCAGCAACTGCTAAGGAGGAGAAGAAGGCAGAAAAGACTGTTTATGAGCTGAAACTAGAGTCGTACGAAGCGTCTGCAAAGATTAAAATTATCAAGGAAGTAAGAAGTTTCACTGATTTAGGTCTCAAAGAGGCAAAGGATTTAGTGGAGAAAACCCCGTCGGTGTTGAAGAAGGGACTATCAAAGGAAGAGGGTGAAAAAATAATTGAAAAGATGAAGGCACTTGGTGCAAAAGTGATCTTGGAATGAATGTATGCTTTCGGTCATCCCATCCACTGTCTCTCATGTTATTTTGTTCTTGCTTCGTTAGACTTGATGCTTTTTATAATAATATCTTGCAATTTTCATGTCTTGATTTTCTCGCTAAATAGCATCACAACAACCATCTCCAAACGAATGGAAGAGGAGAAACATCTTCTGTCCCTTCCCATGCCTCAATAGTCAAACAAACCAACTTATACATGTATTGCTGCTTTTCCTTTTTTTCATGTATTGTTTACGGGCAATTTGTAGAACTCAAGAGCCTCGGCCAGTTGATGAATCCAACTTAATTTTGAAAATTTTGAATTAGACTGTGTTTTGCTAGGCTTTTTCTTTAAA

mRNA sequence

ATTGGTATTATTGTTTTTTATTTCTTTTTTGGAGAAACGAATTGGGAGCCCTAATTTCCCATTGCCATTGATCTGCAGCACTGTATCTCTGAAGCTCACTCACCTCCATTTCTGGACGAGATTGAAGCTTCTTCAGCCATTATCATCGGTAATCCACCAATCCTCACGGCGCACTTCAAACCACCACATTCCCTGCCTTAGCGCCTATTTCTCATCTCATAGCGCCACTGACTTGCCCTTCTGAAAGCCAAAAATGGGTTTGAACTAAATAGCTTGCTACCTCAAGGGGGAAGTTAATTTGGCAACTTGAGAAATGCACTTAGTTTTAAGAATAAGGCATCTCCTACCCAATGTGTTTGCAAACACCATTCGCTCTCCTGCAGTTGCCCTCAATCCTCTCAACATAAATGGATTACATAGAAATTATGCTCAACCTGCTCGGATAGAGGATGAAGAGGAAGAGTTGGAAATTGACCAGAGAAGGCTTCCAGCTGATTACGATCCTGCTAATTTTGATCCAACACAGCATCGTAGTCCTCCAACTGATCGTGTTTTTAGGCTTGTAGATGAAATATCTGGACTTACATTAGTTGAAGTTGCTGAATTATCTTCCATTTTGAGGAAAAAGTTAGGAATGACAGACATGCCAGTTGTTGGAGTTATGAAACCAGGAGCTGCCGGATTGGCTGGAATGGCAATGAAAGCATCATCATCAGCAACTGCTAAGGAGGAGAAGAAGGCAGAAAAGACTGTTTATGAGCTGAAACTAGAGTCGTACGAAGCGTCTGCAAAGATTAAAATTATCAAGGAAGTAAGAAGTTTCACTGATTTAGGTCTCAAAGAGGCAAAGGATTTAGTGGAGAAAACCCCGTCGGTGTTGAAGAAGGGACTATCAAAGGAAGAGGGTGAAAAAATAATTGAAAAGATGAAGGCACTTGGTGCAAAAGTGATCTTGGAATGAATGTATGCTTTCGGTCATCCCATCCACTGTCTCTCATGTTATTTTGTTCTTGCTTCGTTAGACTTGATGCTTTTTATAATAATATCTTGCAATTTTCATGTCTTGATTTTCTCGCTAAATAGCATCACAACAACCATCTCCAAACGAATGGAAGAGGAGAAACATCTTCTGTCCCTTCCCATGCCTCAATAGTCAAACAAACCAACTTATACATGTATTGCTGCTTTTCCTTTTTTTCATGTATTGTTTACGGGCAATTTGTAGAACTCAAGAGCCTCGGCCAGTTGATGAATCCAACTTAATTTTGAAAATTTTGAATTAGACTGTGTTTTGCTAGGCTTTTTCTTTAAA

Coding sequence (CDS)

ATGCACTTAGTTTTAAGAATAAGGCATCTCCTACCCAATGTGTTTGCAAACACCATTCGCTCTCCTGCAGTTGCCCTCAATCCTCTCAACATAAATGGATTACATAGAAATTATGCTCAACCTGCTCGGATAGAGGATGAAGAGGAAGAGTTGGAAATTGACCAGAGAAGGCTTCCAGCTGATTACGATCCTGCTAATTTTGATCCAACACAGCATCGTAGTCCTCCAACTGATCGTGTTTTTAGGCTTGTAGATGAAATATCTGGACTTACATTAGTTGAAGTTGCTGAATTATCTTCCATTTTGAGGAAAAAGTTAGGAATGACAGACATGCCAGTTGTTGGAGTTATGAAACCAGGAGCTGCCGGATTGGCTGGAATGGCAATGAAAGCATCATCATCAGCAACTGCTAAGGAGGAGAAGAAGGCAGAAAAGACTGTTTATGAGCTGAAACTAGAGTCGTACGAAGCGTCTGCAAAGATTAAAATTATCAAGGAAGTAAGAAGTTTCACTGATTTAGGTCTCAAAGAGGCAAAGGATTTAGTGGAGAAAACCCCGTCGGTGTTGAAGAAGGGACTATCAAAGGAAGAGGGTGAAAAAATAATTGAAAAGATGAAGGCACTTGGTGCAAAAGTGATCTTGGAATGA

Protein sequence

MHLVLRIRHLLPNVFANTIRSPAVALNPLNINGLHRNYAQPARIEDEEEELEIDQRRLPADYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKPGAAGLAGMAMKASSSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKGLSKEEGEKIIEKMKALGAKVILE

Homology

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BLAST of BhiUN316G60 vs. TAIR10
Match: AT1G70190.1 (Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like)

HSP 1 Score: 240.7 bits (613), Expect = 8.1e-64
Identity = 144/217 (66.36%), Postives = 167/217 (76.96%), Query Frame = 0


Query: 1   MHLVLRIRHLLPNVFANTIRSPAVALNPLNINGLHRNYAQPARIEDEEEELEIDQRRLPA 60
           M LVLR R  L    +         L+ L+  G +R+Y QPA+IEDEEEE E DQR+LP 
Sbjct: 1   MSLVLRFRQHLSQTSSR--------LSLLSRIGGYRSYTQPAKIEDEEEE-EFDQRKLPT 60

Query: 61  DYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKPG 120
           DYDPA FDPT+HRSPPTDRVFRLVDEIS LTL+E++EL SI+ KK GMT++P V VMKPG
Sbjct: 61  DYDPATFDPTEHRSPPTDRVFRLVDEISSLTLLEISELGSIIMKKKGMTELPTVAVMKPG 120

Query: 121 A--AGLAGXXXXXXXXXXXXEEKKAEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEA 180
           A       XXXXX       EE K EKTV+E+KLES+EASAKIKIIKE+RSFTDLGLKEA
Sbjct: 121 AXXXXXXXXXXXXVSQSGVSEEAKVEKTVFEIKLESFEASAKIKIIKELRSFTDLGLKEA 180

Query: 181 KDLVEKTPSVLKKGLSKEEGEKIIEKMKALGAKVILE 216
           K LVEKTP++LK GLSKEEGEKI+EK+KALGAKV+LE
Sbjct: 181 KALVEKTPAILKAGLSKEEGEKILEKLKALGAKVVLE 208

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BLAST of BhiUN316G60 vs. TAIR10
Match: AT4G36420.1 (Ribosomal protein L12 family protein)

HSP 1 Score: 135.2 bits (339), Expect = 4.8e-32
Identity = 75/146 (51.37%), Postives = 107/146 (73.29%), Query Frame = 0


Query: 72  HRSPPT--DRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKPGAAGLAGXXX 131
           + SP T  + V ++V+E+S LTL+E  +L+ ILR+KL ++++PV+  M PG + L G   
Sbjct: 35  YSSPATQSENVSKIVNELSNLTLLETMDLTEILRQKLNISELPVMAAMMPGMS-LPGSGA 94

Query: 132 XXXXXXXXXEEKKAEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVL 191
                    E+KK  KT +++ L++Y+A +KIK+IKEVR+ T LGLKEAKDLVEK P++L
Sbjct: 95  SKSAGGEGKEKKKEAKTAFDVMLQAYDAVSKIKVIKEVRTITALGLKEAKDLVEKAPTLL 154

Query: 192 KKGLSKEEGEKIIEKMKALGAKVILE 216
           KKG+SKEE EKIIEK+KA+GAKV +E
Sbjct: 155 KKGVSKEEAEKIIEKLKAVGAKVAME 179

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BLAST of BhiUN316G60 vs. TAIR10
Match: AT4G37660.1 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein)

HSP 1 Score: 104.4 bits (259), Expect = 9.1e-23
Identity = 63/139 (45.32%), Postives = 90/139 (64.75%), Query Frame = 0


Query: 77  TDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKPGAAGLAGXXXXXXXXXX 136
           T ++ R+ D++  L  +E+ + S +   K+G+       V   G+ G A           
Sbjct: 39  TKKLERIADDLLKLNRIELYDYSLLFSHKIGLNRYG-SAVAVTGSVGDAS---------A 98

Query: 137 XXEEKKAEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKGLSKE 196
             E K AEKT +++KLE +EA++KIK+IKE+R+FTDLGLKEAK LVEK P ++K GL+KE
Sbjct: 99  STETKTAEKTTFDVKLEKFEAASKIKVIKEIRAFTDLGLKEAKALVEKAPVIVKNGLTKE 158

Query: 197 EGEKIIEKMKALGAKVILE 216
           E EKI+EK+KA+GA V LE
Sbjct: 159 EAEKIMEKLKAVGAIVALE 167

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BLAST of BhiUN316G60 vs. TAIR10
Match: AT3G06040.1 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein)

HSP 1 Score: 100.5 bits (249), Expect = 1.3e-21
Identity = 59/152 (38.82%), Postives = 91/152 (59.87%), Query Frame = 0


Query: 64  PANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKPGAAG 123
           P+ +DP   R  P+ ++  L + I+ L+  E  ++   L + L +    ++     GA  
Sbjct: 44  PSVYDPYGPRPQPSSKIMELAERIAALSPEERKQIGPALNEHLRLPKQQMISSDGIGAKQ 103

Query: 124 LAGXXXXXXXXXXXXEEKKAEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDLVE 183
             G             E+K EKT +++KLE + AS KIK+IKEVR+FT LGLKEAK+LVE
Sbjct: 104 DTGAGNV---------EEKKEKTAFDVKLEKFNASDKIKVIKEVRTFTSLGLKEAKELVE 163

Query: 184 KTPSVLKKGLSKEEGEKIIEKMKALGAKVILE 216
           K P++LK+G++KEE  +II K+KA+G   ++E
Sbjct: 164 KVPAILKQGVTKEEANEIIAKIKAVGGIAVME 186

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BLAST of BhiUN316G60 vs. TAIR10
Match: AT2G03130.1 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein)

HSP 1 Score: 94.4 bits (233), Expect = 9.4e-20
Identity = 51/77 (66.23%), Postives = 63/77 (81.82%), Query Frame = 0


Query: 139 EEKKAEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKGLSKEEG 198
           E  KAEKTV+E+KLES+EA AKIKIIKEVR    +GLKEA  LV K P+VLK GLSKEEG
Sbjct: 15  EGAKAEKTVFEVKLESFEARAKIKIIKEVRRIIGVGLKEAMKLVVKAPTVLKTGLSKEEG 74

Query: 199 EKIIEKMKALGAKVILE 216
           E+++EK+ ALGA+ +L+
Sbjct: 75  EEVVEKLNALGAEAVLQ 91

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BLAST of BhiUN316G60 vs. Swiss-Prot
Match: sp|P41189|RL7_LIBAF (50S ribosomal protein L7/L12 OS=Liberibacter africanus OX=34020 GN=rplL PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 4.2e-17
Identity = 55/132 (41.67%), Postives = 81/132 (61.36%), Query Frame = 0


Query: 83  LVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKPGAAGLAGXXXXXXXXXXXXEEKK 142
           +V+++S LTL++ AELS  L ++ G++    V V+   A   A                 
Sbjct: 7   IVEKLSSLTLLQAAELSKRLEEEWGVSAAAPVAVVASAAGESAAAV-------------- 66

Query: 143 AEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKGLSKEEGEKII 202
           AEKT +E+ LE ++A  KI +IKEVR+ T+LGLKEAKD VE  P  LK G+SK+E E++ 
Sbjct: 67  AEKTEFEVFLEGFDAKKKISVIKEVRAITELGLKEAKDFVESAPKSLKTGVSKDEAEELK 124

Query: 203 EKMKALGAKVIL 215
           +K++A GA +IL
Sbjct: 127 KKLEAAGATIIL 124

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BLAST of BhiUN316G60 vs. Swiss-Prot
Match: sp|Q9L5W4|RL7_LIBAC (50S ribosomal protein L7/L12 OS=Liberibacter africanus subsp. capensis OX=119494 GN=rplL PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 3.0e-15
Identity = 54/132 (40.91%), Postives = 82/132 (62.12%), Query Frame = 0


Query: 83  LVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKPGAAGLAGXXXXXXXXXXXXEEKK 142
           +V+++S LTL++ AELS  L ++ G++    V  + P                 XX+   
Sbjct: 7   IVEKLSSLTLIQAAELSKRLEEEWGVSASAPVAAVAPAV---------------XXDVAV 66

Query: 143 AEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKGLSKEEGEKII 202
           AEKT +E+ LES++A +KI +IKEVRS TDLGLKEAK+LVE     L+ G+SK+E  ++ 
Sbjct: 67  AEKTEFEVFLESFDAKSKISVIKEVRSITDLGLKEAKELVEALLKSLRTGVSKDEANELK 123

Query: 203 EKMKALGAKVIL 215
           +K++A GA + L
Sbjct: 127 KKLEAAGATISL 123

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BLAST of BhiUN316G60 vs. Swiss-Prot
Match: sp|P53163|MNP1_YEAST (54S ribosomal protein L12, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=MNP1 PE=1 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.9e-14
Identity = 54/146 (36.99%), Postives = 84/146 (57.53%), Query Frame = 0


Query: 75  PPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTD--MPVVGVMKPGAAGLAGXXXXXX 134
           P   ++ ++V +IS LTL+E + L + L+  L + +  MP+ G M   A   AG      
Sbjct: 49  PVDPKISKIVQDISQLTLLETSSLINELKTVLNIPEISMPMGGFMAGAAGAGAGNVPSST 108

Query: 135 XXXXXXEEKKAE---KTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVL 194
                  E++A+   KTV+ +KL+S++   K K+IKEV+    L L EAK  VE  P VL
Sbjct: 109 GEAGSGAEEEAKPEAKTVFTVKLDSFDTKTKAKVIKEVKGLLGLSLVEAKKFVEAAPKVL 168

Query: 195 KKGLSKEEGEKIIEKMKALGAKVILE 216
           K+ ++K++ EKI + ++ LGAKV LE
Sbjct: 169 KENVAKDDAEKIKKTLEDLGAKVSLE 194

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BLAST of BhiUN316G60 vs. Swiss-Prot
Match: sp|A1USC7|RL7_BARBK (50S ribosomal protein L7/L12 OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) OX=360095 GN=rplL PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.9e-14
Identity = 54/134 (40.30%), Postives = 80/134 (59.70%), Query Frame = 0


Query: 82  RLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKPGAAGLAGXXXXXXXXXXXXEEK 141
           ++V+++S LT++E AELS +L +K G++    V V   G+A                   
Sbjct: 6   KIVEDLSNLTVLEAAELSKLLEEKWGVSAAAPVAVAAVGSAAAPA--------------- 65

Query: 142 KAEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKGLSKEEGEKI 201
             EKT +++ L    A  KI +IKEVR+ T LGLKEAKDLVE  P  +K+G+SK+E EKI
Sbjct: 66  AEEKTEFDVVLVDGGAQ-KINVIKEVRALTGLGLKEAKDLVEGAPKPIKEGVSKDEAEKI 123

Query: 202 IEKMKALGAKVILE 216
             +++A GAK+ L+
Sbjct: 126 KAQLEAAGAKIELK 123

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BLAST of BhiUN316G60 vs. Swiss-Prot
Match: sp|Q6FZL8|RL7_BARQU (50S ribosomal protein L7/L12 OS=Bartonella quintana (strain Toulouse) OX=283165 GN=rplL PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.9e-14
Identity = 57/132 (43.18%), Postives = 78/132 (59.09%), Query Frame = 0


Query: 82  RLVDEISGLTLVEVAELSSILRKKLGMT-DMPVVGVMKPGAAGLAGXXXXXXXXXXXXEE 141
           ++V+++S LTL+E AELS +L +K G++   PV      GAA  A               
Sbjct: 6   KIVEDLSNLTLLEAAELSKLLEEKWGVSAAAPVAVATVAGAAAPAA-------------- 65

Query: 142 KKAEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKGLSKEEGEK 201
              EKT +++ L    A  KI +IKEVR+ T LGLKEAKDLVE  P  +K+G SK+E EK
Sbjct: 66  --EEKTEFDVILVDCGAQ-KINVIKEVRALTGLGLKEAKDLVEGAPKPIKEGASKDEAEK 120

Query: 202 IIEKMKALGAKV 213
           I  +++A GAKV
Sbjct: 126 IKSQLEAAGAKV 120

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BLAST of BhiUN316G60 vs. TrEMBL
Match: tr|W9S8M4|W9S8M4_9ROSA (50S ribosomal protein OS=Morus notabilis OX=981085 GN=L484_005958 PE=3 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 5.6e-75
Identity = 155/216 (71.76%), Postives = 177/216 (81.94%), Query Frame = 0


Query: 1   MHLVLRIRHLLPNVF-ANTIRSPAVALNPLNINGLHRNYAQPARIEDEEEELEIDQRRLP 60
           M LVLR++H LPN F     RS  VALNP NINGL +NY QPA  E+E+EE+E DQRRLP
Sbjct: 1   MSLVLRLKHHLPNGFYRKPFRSTVVALNPGNINGLWKNYGQPAIKEEEDEEVEFDQRRLP 60

Query: 61  ADYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKP 120
            DYDPA FDP++HRSPPT+RVFRLVDEISGLTL EVAEL +I  +K GMT+ P VGVMKP
Sbjct: 61  TDYDPATFDPSEHRSPPTERVFRLVDEISGLTLAEVAELGAIFMRKRGMTEPPSVGVMKP 120

Query: 121 GAAGLAGXXXXXXXXXXXXEEKKAEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAK 180
           GAAGLAG            EEKK EKTV+ELKLESYEA++KIK+IKEVRSFTDLGLKEAK
Sbjct: 121 GAAGLAGMALATKAATAAKEEKKPEKTVFELKLESYEAASKIKLIKEVRSFTDLGLKEAK 180

Query: 181 DLVEKTPSVLKKGLSKEEGEKIIEKMKALGAKVILE 216
           DLVEKTPS+LKKGLSKEEGE+++EK+K LGAKV+LE
Sbjct: 181 DLVEKTPSILKKGLSKEEGEQLVEKLKELGAKVVLE 216

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BLAST of BhiUN316G60 vs. TrEMBL
Match: tr|A0A2C9W5G7|A0A2C9W5G7_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_03G074200 PE=3 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 1.0e-73
Identity = 157/217 (72.35%), Postives = 182/217 (83.87%), Query Frame = 0


Query: 1   MHLVLRIRHLLPNVF-ANTIRSPAVALNPLNING-LHRNYAQPARIEDEEEELEIDQRRL 60
           M+L+ R+RH +PN F A     P V LN + +NG L R +AQPAR++ EEEE+EIDQRRL
Sbjct: 1   MNLIFRLRHNIPNGFSAKPSFRPLVPLNFMKLNGALSRGFAQPARVDGEEEEVEIDQRRL 60

Query: 61  PADYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMK 120
           PADYDPA FDPT+HRSPPT+RVF+LVDEI+GLTLVEVAELSSI+ +K GMT++PVVGVMK
Sbjct: 61  PADYDPATFDPTEHRSPPTERVFKLVDEIAGLTLVEVAELSSIILRKKGMTELPVVGVMK 120

Query: 121 PGAAGLAGXXXXXXXXXXXXEEKKAEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEA 180
            GAAGLAG            EEKK EKTV+ELKLESYEA++KIKIIKEVRSFTDLGLKEA
Sbjct: 121 AGAAGLAG-MTMKAPTAAAKEEKKPEKTVFELKLESYEAASKIKIIKEVRSFTDLGLKEA 180

Query: 181 KDLVEKTPSVLKKGLSKEEGEKIIEKMKALGAKVILE 216
           KDLVEKTPS+LK G+SKEEGEKIIEKMKALGAKV++E
Sbjct: 181 KDLVEKTPSILKAGVSKEEGEKIIEKMKALGAKVVME 216

[Close]

BLAST of BhiUN316G60 vs. TrEMBL
Match: tr|A0A2P4HL83|A0A2P4HL83_QUESU (50s ribosomal protein l7/l12 OS=Quercus suber OX=58331 GN=CFP56_02041 PE=3 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 4.4e-72
Identity = 152/215 (70.70%), Postives = 175/215 (81.40%), Query Frame = 0


Query: 1   MHLVLRIRHLLPNVFANTIRSPAVALNPLNINGLHRNYAQPARIEDEEEELEIDQRRLPA 60
           M  +LR RH LPN  +   R+P VALN +N +G  R++ QPAR+E EEEE EIDQRRLP 
Sbjct: 1   MSFILRFRHHLPNGLS---RNPVVALNAINFSGFTRSFGQPARVE-EEEEXEIDQRRLPT 60

Query: 61  DYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKPG 120
           DYDPA FDPT+HRSPPT+RVFRLVDE+SGLTL E AEL +I+ +K+GM + P VGV+KPG
Sbjct: 61  DYDPATFDPTEHRSPPTERVFRLVDEVSGLTLAEAAELGAIMMRKMGMKEPPTVGVLKPG 120

Query: 121 AAGLAGXXXXXXXXXXXXEEKKAEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKD 180
           AAGLAG            EEKK EKTV+E+KLESYEASAKIKIIKEVR FTDLGLKEAKD
Sbjct: 121 AAGLAG--MAVKSSAAAKEEKKPEKTVFEIKLESYEASAKIKIIKEVRGFTDLGLKEAKD 180

Query: 181 LVEKTPSVLKKGLSKEEGEKIIEKMKALGAKVILE 216
           LVEKTPSVLK+GLSKEEGE+IIEK+KALGAKV+LE
Sbjct: 181 LVEKTPSVLKRGLSKEEGEQIIEKLKALGAKVVLE 209

[Close]

BLAST of BhiUN316G60 vs. TrEMBL
Match: tr|A0A2R6QMF2|A0A2R6QMF2_ACTCH (50S ribosomal protein like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc15365 PE=3 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 4.9e-71
Identity = 156/217 (71.89%), Postives = 177/217 (81.57%), Query Frame = 0


Query: 1   MHLVLRIRHLLP-NVFANTIRSPAVALNPLNINGLHRNYAQPARIEDEE-EELEIDQRRL 60
           M  + R+RH LP  +    I S  VALN +N+N   R++ QPAR EDEE EE+EIDQRRL
Sbjct: 1   MSFIKRVRHHLPYGLCRKPILSSMVALNCVNLNVGIRHFTQPARNEDEEDEEVEIDQRRL 60

Query: 61  PADYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMK 120
           PADYDPA FDPTQHRSPPT RVFRLVDEI+GLTLVE+AELSSIL KKLGM D PVVGVMK
Sbjct: 61  PADYDPATFDPTQHRSPPTGRVFRLVDEIAGLTLVEIAELSSILMKKLGMKDPPVVGVMK 120

Query: 121 PGAAGLAGXXXXXXXXXXXXEEKKAEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEA 180
           PGAAGLAG            EEKK EKTV+ELKLESYEA++KIKIIKE+RSFTDLGLKEA
Sbjct: 121 PGAAGLAG--ATMKAPTAAKEEKKPEKTVFELKLESYEAASKIKIIKEIRSFTDLGLKEA 180

Query: 181 KDLVEKTPSVLKKGLSKEEGEKIIEKMKALGAKVILE 216
           KDLVEK P+V KKG+SKEEGE+II+KMKA+GAKV++E
Sbjct: 181 KDLVEKAPAVFKKGVSKEEGEQIIDKMKAVGAKVVME 215

[Close]

BLAST of BhiUN316G60 vs. TrEMBL
Match: tr|A0A2P4HL58|A0A2P4HL58_QUESU (50s ribosomal protein l7/l12 OS=Quercus suber OX=58331 GN=CFP56_02040 PE=4 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 2.4e-70
Identity = 149/211 (70.62%), Postives = 171/211 (81.04%), Query Frame = 0


Query: 1   MHLVLRIRHLLPNVFANTIRSPAVALNPLNINGLHRNYAQPARIEDEEEELEIDQRRLPA 60
           M  +LR RH LPN  +   R+P VALN +N +G  R++ QPAR+E EEEE EIDQRRLP 
Sbjct: 1   MSFILRFRHHLPNGLS---RNPVVALNAINFSGFTRSFGQPARVE-EEEEXEIDQRRLPT 60

Query: 61  DYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKPG 120
           DYDPA FDPT+HRSPPT+RVFRLVDE+SGLTL E AEL +I+ +K+GM + P VGV+KPG
Sbjct: 61  DYDPATFDPTEHRSPPTERVFRLVDEVSGLTLAEAAELGAIMMRKMGMKEPPTVGVLKPG 120

Query: 121 AAGLAGXXXXXXXXXXXXEEKKAEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKD 180
           AAGLAG            EEKK EKTV+E+KLESYEASAKIKIIKEVR FTDLGLKEAKD
Sbjct: 121 AAGLAG--MAVKSSAAAKEEKKPEKTVFEIKLESYEASAKIKIIKEVRGFTDLGLKEAKD 180

Query: 181 LVEKTPSVLKKGLSKEEGEKIIEKMKALGAK 212
           LVEKTPSVLK+GLSKEEGE+IIEK+KALGAK
Sbjct: 181 LVEKTPSVLKRGLSKEEGEQIIEKLKALGAK 205

[Close]

BLAST of BhiUN316G60 vs. NCBI nr
Match: XP_022137691.1 (uncharacterized protein LOC111009067 [Momordica charantia])

HSP 1 Score: 359.4 bits (921), Expect = 8.6e-96
Identity = 193/215 (89.77%), Postives = 200/215 (93.02%), Query Frame = 0


Query: 1   MHLVLRIRHLLPNVFANTIRSPAVALNPLNINGLHRNYAQPARIEDEEEELEIDQRRLPA 60
           MHLVLRIRHLLPNVFANTIRSPAVALNPLN NGLHRNYAQPARIE+EE+E+EIDQRRLPA
Sbjct: 1   MHLVLRIRHLLPNVFANTIRSPAVALNPLNSNGLHRNYAQPARIEEEEDEVEIDQRRLPA 60

Query: 61  DYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKPG 120
           DYDPANFDPT+HRSPPTDRVFRLVDEISGLTLVEVAELS+ILRKKLGMTDMPVVGVMKPG
Sbjct: 61  DYDPANFDPTEHRSPPTDRVFRLVDEISGLTLVEVAELSTILRKKLGMTDMPVVGVMKPG 120

Query: 121 AAGLAGXXXXXXXXXXXXEEKKAEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKD 180
           AAGL G            EEKK EKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKD
Sbjct: 121 AAGLGG--MAMKASTAAKEEKKPEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKD 180

Query: 181 LVEKTPSVLKKGLSKEEGEKIIEKMKALGAKVILE 216
           LVEKTPSVLKKGLSKEEGE++IEKMKALGAKVILE
Sbjct: 181 LVEKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 213

[Close]

BLAST of BhiUN316G60 vs. NCBI nr
Match: XP_022954769.1 (uncharacterized protein LOC111456924 [Cucurbita moschata] >XP_022954770.1 uncharacterized protein LOC111456924 [Cucurbita moschata])

HSP 1 Score: 339.7 bits (870), Expect = 7.1e-90
Identity = 185/215 (86.05%), Postives = 192/215 (89.30%), Query Frame = 0


Query: 1   MHLVLRIRHLLPNVFANTIRSPAVALNPLNINGLHRNYAQPARIEDEEEELEIDQRRLPA 60
           MHLVLR RHLLP VF N +RSP  A    N+NGLHRNYAQPARIE+EEEE+EIDQRRLPA
Sbjct: 1   MHLVLRTRHLLPGVFTNIVRSPVAA---FNLNGLHRNYAQPARIEEEEEEVEIDQRRLPA 60

Query: 61  DYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKPG 120
           DYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKPG
Sbjct: 61  DYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKPG 120

Query: 121 AAGLAGXXXXXXXXXXXXEEKKAEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKD 180
           AAGLAG            EEKK EKTVYELKLESYEA+AKIKIIKEVRSFTDLGLKEAKD
Sbjct: 121 AAGLAG-MGMKASAAAAKEEKKPEKTVYELKLESYEAAAKIKIIKEVRSFTDLGLKEAKD 180

Query: 181 LVEKTPSVLKKGLSKEEGEKIIEKMKALGAKVILE 216
           LVEKTPSVLKKGLSKEEGE++IEKMKALGAKVILE
Sbjct: 181 LVEKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 211

[Close]

BLAST of BhiUN316G60 vs. NCBI nr
Match: XP_023542773.1 (uncharacterized protein LOC111802581 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 338.2 bits (866), Expect = 2.1e-89
Identity = 185/215 (86.05%), Postives = 192/215 (89.30%), Query Frame = 0


Query: 1   MHLVLRIRHLLPNVFANTIRSPAVALNPLNINGLHRNYAQPARIEDEEEELEIDQRRLPA 60
           MHLVLR RHLLP VF N +RSP VA    N+NGL RNYAQPARIE+EEEE+EIDQRRLPA
Sbjct: 1   MHLVLRTRHLLPGVFTNIVRSPVVA---FNLNGLRRNYAQPARIEEEEEEVEIDQRRLPA 60

Query: 61  DYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKPG 120
           DYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKPG
Sbjct: 61  DYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKPG 120

Query: 121 AAGLAGXXXXXXXXXXXXEEKKAEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKD 180
           AAGLAG            EEKK EKTVYELKLESYEA+AKIKIIKEVRSFTDLGLKEAKD
Sbjct: 121 AAGLAG-MGMKASAAASKEEKKPEKTVYELKLESYEAAAKIKIIKEVRSFTDLGLKEAKD 180

Query: 181 LVEKTPSVLKKGLSKEEGEKIIEKMKALGAKVILE 216
           LVEKTPSVLKKGLSKEEGE++IEKMKALGAKVILE
Sbjct: 181 LVEKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 211

[Close]

BLAST of BhiUN316G60 vs. NCBI nr
Match: XP_022994471.1 (uncharacterized protein LOC111490181 [Cucurbita maxima])

HSP 1 Score: 334.0 bits (855), Expect = 3.9e-88
Identity = 183/215 (85.12%), Postives = 190/215 (88.37%), Query Frame = 0


Query: 1   MHLVLRIRHLLPNVFANTIRSPAVALNPLNINGLHRNYAQPARIEDEEEELEIDQRRLPA 60
           MHLVLR RHLLP VF N +RSP  A    N+NGLHRNYAQPA IE+EEEE+EIDQRRLPA
Sbjct: 1   MHLVLRTRHLLPGVFTNIVRSPVAA---FNLNGLHRNYAQPAWIEEEEEEVEIDQRRLPA 60

Query: 61  DYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKPG 120
           DYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKPG
Sbjct: 61  DYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKPG 120

Query: 121 AAGLAGXXXXXXXXXXXXEEKKAEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKD 180
           AAGLAG            E KK EKTVYELKLESYEA+AKIKIIKEVRSFTDLGLKEAKD
Sbjct: 121 AAGLAG-MGMKASAAAAKEVKKPEKTVYELKLESYEAAAKIKIIKEVRSFTDLGLKEAKD 180

Query: 181 LVEKTPSVLKKGLSKEEGEKIIEKMKALGAKVILE 216
           LVEKTPSVLKKGLSKEEGE++IEKMKALGAKVILE
Sbjct: 181 LVEKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 211

[Close]

BLAST of BhiUN316G60 vs. NCBI nr
Match: XP_023001011.1 (uncharacterized protein LOC111495277 [Cucurbita maxima] >XP_023001013.1 uncharacterized protein LOC111495277 [Cucurbita maxima])

HSP 1 Score: 304.3 bits (778), Expect = 3.3e-79
Identity = 183/215 (85.12%), Postives = 192/215 (89.30%), Query Frame = 0


Query: 1   MHLVLRIRHLLPNVFANTIRSPAVALNPLNINGLHRNYAQPARIEDEEEELEIDQRRLPA 60
           M LVLRI HLLPNV ANT RSPA+ALNPLN+NGLHRN+AQPARI  EEEE+EIDQRRLPA
Sbjct: 1   MRLVLRISHLLPNVLANTFRSPALALNPLNVNGLHRNFAQPARI--EEEEVEIDQRRLPA 60

Query: 61  DYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKPG 120
           DYD ANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLG+TDMPVVGVMK  
Sbjct: 61  DYDLANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGLTDMPVVGVMK-X 120

Query: 121 AAGLAGXXXXXXXXXXXXEEKKAEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKD 180
                 XXXXXXXXXXXX        V+ELKLESYEA+AKIKIIKEVRSFTDLGLKEAKD
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKD 180

Query: 181 LVEKTPSVLKKGLSKEEGEKIIEKMKALGAKVILE 216
           LVEKTPSVLKKGLSKEEGE++IEKMKALGAKVILE
Sbjct: 181 LVEKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 212

The following BLAST results are available for this feature:

BLAST of BhiUN316G60 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G70190.1	8.1e-64	66.36	Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/a...	[more]
AT4G36420.1	4.8e-32	51.37	Ribosomal protein L12 family protein	[more]
AT4G37660.1	9.1e-23	45.32	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr...	[more]
AT3G06040.1	1.3e-21	38.82	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr...	[more]
AT2G03130.1	9.4e-20	66.23	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr...	[more]

BLAST of BhiUN316G60 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P41189\|RL7_LIBAF	4.2e-17	41.67	50S ribosomal protein L7/L12 OS=Liberibacter africanus OX=34020 GN=rplL PE=3 SV=...	[more]
sp\|Q9L5W4\|RL7_LIBAC	3.0e-15	40.91	50S ribosomal protein L7/L12 OS=Liberibacter africanus subsp. capensis OX=119494...	[more]
sp\|P53163\|MNP1_YEAST	1.9e-14	36.99	54S ribosomal protein L12, mitochondrial OS=Saccharomyces cerevisiae (strain ATC...	[more]
sp\|A1USC7\|RL7_BARBK	1.9e-14	40.30	50S ribosomal protein L7/L12 OS=Bartonella bacilliformis (strain ATCC 35685 / KC...	[more]
sp\|Q6FZL8\|RL7_BARQU	1.9e-14	43.18	50S ribosomal protein L7/L12 OS=Bartonella quintana (strain Toulouse) OX=283165 ...	[more]

BLAST of BhiUN316G60 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|W9S8M4\|W9S8M4_9ROSA	5.6e-75	71.76	50S ribosomal protein OS=Morus notabilis OX=981085 GN=L484_005958 PE=3 SV=1	[more]
tr\|A0A2C9W5G7\|A0A2C9W5G7_MANES	1.0e-73	72.35	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_03G074200 PE=3 SV=...	[more]
tr\|A0A2P4HL83\|A0A2P4HL83_QUESU	4.4e-72	70.70	50s ribosomal protein l7/l12 OS=Quercus suber OX=58331 GN=CFP56_02041 PE=3 SV=1	[more]
tr\|A0A2R6QMF2\|A0A2R6QMF2_ACTCH	4.9e-71	71.89	50S ribosomal protein like OS=Actinidia chinensis var. chinensis OX=1590841 GN=C...	[more]
tr\|A0A2P4HL58\|A0A2P4HL58_QUESU	2.4e-70	70.62	50s ribosomal protein l7/l12 OS=Quercus suber OX=58331 GN=CFP56_02040 PE=4 SV=1	[more]

BLAST of BhiUN316G60 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022137691.1	8.6e-96	89.77	uncharacterized protein LOC111009067 [Momordica charantia]	[more]
XP_022954769.1	7.1e-90	86.05	uncharacterized protein LOC111456924 [Cucurbita moschata] >XP_022954770.1 unchar...	[more]
XP_023542773.1	2.1e-89	86.05	uncharacterized protein LOC111802581 [Cucurbita pepo subsp. pepo]	[more]
XP_022994471.1	3.9e-88	85.12	uncharacterized protein LOC111490181 [Cucurbita maxima]	[more]
XP_023001011.1	3.3e-79	85.12	uncharacterized protein LOC111495277 [Cucurbita maxima] >XP_023001013.1 uncharac...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **INTERPRO**
Term	Definition
IPR036235	Ribosomal_L7/L12_oligo_N_sf
IPR000206	Ribosomal_L7/12
IPR015608	Put_Ribosomal_L7/L12_plants
IPR008932	Ribosomal_L7/L12_oligo
IPR014719	Ribosomal_L7/12_C/ClpS-like
IPR013823	Ribosomal_L7/L12_C

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006354	DNA-templated transcription, elongation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
BhiUN316M60	BhiUN316M60	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 138..158
None	No IPR available	PANTHER	PTHR24089	FAMILY NOT NAMED	coord: 57..215
IPR013823	Ribosomal protein L7/L12, C-terminal	PFAM	PF00542	Ribosomal_L12	coord: 149..214 e-value: 2.3E-20 score: 72.6
IPR013823	Ribosomal protein L7/L12, C-terminal	PRODOM	PD001326		coord: 152..214 e-value: 1.0E-12 score: 176.0
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	GENE3D	G3DSA:3.30.1390.10		coord: 141..214 e-value: 1.5E-23 score: 84.5
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	SUPERFAMILY	SSF54736	ClpS-like	coord: 148..214
IPR008932	Ribosomal protein L7/L12, oligomerisation	PFAM	PF16320	Ribosomal_L12_N	coord: 83..123 e-value: 8.5E-10 score: 38.1
IPR015608	Putative ribosomal protein L7/L12, plants	PANTHER	PTHR24089:SF387	50S RIBOSOMAL PROTEIN L7/L12-RELATED	coord: 57..215
IPR000206	Ribosomal protein L7/L12	HAMAP	MF_00368	Ribosomal_L7_L12	coord: 77..215 score: 17.242
IPR000206	Ribosomal protein L7/L12	CDD	cd00387	Ribosomal_L7_L12	coord: 79..214 e-value: 3.62351E-45 score: 147.687
IPR036235	Ribosomal protein L7/L12, oligomerisation domain superfamily	SUPERFAMILY	SSF48300	Ribosomal protein L7/12, oligomerisation (N-terminal) domain	coord: 82..123

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
BhiUN316G60	Csa1G057000	Cucumber (Chinese Long) v2	cuwgoB026
BhiUN316G60	MELO3C002405	Melon (DHL92) v3.5.1	mewgoB159
BhiUN316G60	ClCG03G004220	Watermelon (Charleston Gray)	wcgwgoB338
BhiUN316G60	CSPI01G10090	Wild cucumber (PI 183967)	cpiwgoB026
BhiUN316G60	Cucsa.134520	Cucumber (Gy14) v1	cgywgoB258
BhiUN316G60	CmaCh13G008480	Cucurbita maxima (Rimu)	cmawgoB0250
BhiUN316G60	CmaCh18G002830	Cucurbita maxima (Rimu)	cmawgoB0519
BhiUN316G60	CmoCh18G002480	Cucurbita moschata (Rifu)	cmowgoB0515
BhiUN316G60	CmoCh13G008740	Cucurbita moschata (Rifu)	cmowgoB0243
BhiUN316G60	Lsi02G005450	Bottle gourd (USVL1VR-Ls)	lsiwgoB236
BhiUN316G60	Cp4.1LG09g09420	Cucurbita pepo (Zucchini)	cpewgoB0037
BhiUN316G60	Cp4.1LG20g02850	Cucurbita pepo (Zucchini)	cpewgoB0634
BhiUN316G60	MELO3C002405.2	Melon (DHL92) v3.6.1	medwgoB162
BhiUN316G60	Carg06829	Silver-seed gourd	carwgoB0599
BhiUN316G60	Carg07640	Silver-seed gourd	carwgoB1176
BhiUN316G60	CsaV3_1G010160	Cucumber (Chinese Long) v3	cucwgoB029
BhiUN316G60	Cla019335	Watermelon (97103) v1	wgowmB465
BhiUN316G60	Cla97C03G055380	Watermelon (97103) v2	wgowmbB448

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
BhiUN316G60	Cucumber (Gy14) v2	cgybwgoB023