Carg06829 (gene) Silver-seed gourd

NameCarg06829
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Description50s ribosomal protein l7/l12
LocationCucurbita_argyrosperma_scaffold_012 : 1260548 .. 1261183 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACTTAGTTTTAAGAACAAGGCTTCTCCTACCCGGTGTGTTTACTAACATCGTTCGTTCCCCTGTGGCTGCCTTCAACTTAAATGGATTACATAGAAATTACGCTCAACCTGCTCGGATAGAGGAGGAAGAGGAGGAAGTGGAAATTGACCAGAGAAGGCTTCCAGCTGATTACGATCCAGCAAATTTCGATCCAACACAGCATCGCAGTCCTCCAACTGATCGTGTTTTTAGGCTTGTGGATGAAATATCAGGACTCACATTAGTTGAAGTTGCTGAATTATCTTCCATTTTGAGGAAAAAATTAGGAATGACAGACATGCCAGTGGTTGGAGTTATGAAACCAGGAGCTGCCGGATTAGCTGGTATGGGTATGAAGGCATCAGCAGCAGCTGCCAAGGAGGAGAAGAAGCCGGAAAAGACTGTTTATGAATTGAAATTAGAGTCTTACGAAGCAGCTGCAAAGATTAAAATTATAAAGGAGGTAAGAAGTTTCACGGATTTAGGGCTTAAAGAAGCAAAGGATCTAGTGGAGAAAACGCCATCAGTGTTGAAGAAGGGATTGTCAAAGGAAGAGGGTGAACAATTGATTGAAAAGATGAAGGCACTCGGTGCAAAAGTCATCTTGGAATGA

mRNA sequence

ATGCACTTAGTTTTAAGAACAAGGCTTCTCCTACCCGGTGTGTTTACTAACATCGTTCGTTCCCCTGTGGCTGCCTTCAACTTAAATGGATTACATAGAAATTACGCTCAACCTGCTCGGATAGAGGAGGAAGAGGAGGAAGTGGAAATTGACCAGAGAAGGCTTCCAGCTGATTACGATCCAGCAAATTTCGATCCAACACAGCATCGCAGTCCTCCAACTGATCGTGTTTTTAGGCTTGTGGATGAAATATCAGGACTCACATTAGTTGAAGTTGCTGAATTATCTTCCATTTTGAGGAAAAAATTAGGAATGACAGACATGCCAGTGGTTGGAGTTATGAAACCAGGAGCTGCCGGATTAGCTGGTATGGGTATGAAGGCATCAGCAGCAGCTGCCAAGGAGGAGAAGAAGCCGGAAAAGACTGTTTATGAATTGAAATTAGAGTCTTACGAAGCAGCTGCAAAGATTAAAATTATAAAGGAGGTAAGAAGTTTCACGGATTTAGGGCTTAAAGAAGCAAAGGATCTAGTGGAGAAAACGCCATCAGTGTTGAAGAAGGGATTGTCAAAGGAAGAGGGTGAACAATTGATTGAAAAGATGAAGGCACTCGGTGCAAAAGTCATCTTGGAATGA

Coding sequence (CDS)

ATGCACTTAGTTTTAAGAACAAGGCTTCTCCTACCCGGTGTGTTTACTAACATCGTTCGTTCCCCTGTGGCTGCCTTCAACTTAAATGGATTACATAGAAATTACGCTCAACCTGCTCGGATAGAGGAGGAAGAGGAGGAAGTGGAAATTGACCAGAGAAGGCTTCCAGCTGATTACGATCCAGCAAATTTCGATCCAACACAGCATCGCAGTCCTCCAACTGATCGTGTTTTTAGGCTTGTGGATGAAATATCAGGACTCACATTAGTTGAAGTTGCTGAATTATCTTCCATTTTGAGGAAAAAATTAGGAATGACAGACATGCCAGTGGTTGGAGTTATGAAACCAGGAGCTGCCGGATTAGCTGGTATGGGTATGAAGGCATCAGCAGCAGCTGCCAAGGAGGAGAAGAAGCCGGAAAAGACTGTTTATGAATTGAAATTAGAGTCTTACGAAGCAGCTGCAAAGATTAAAATTATAAAGGAGGTAAGAAGTTTCACGGATTTAGGGCTTAAAGAAGCAAAGGATCTAGTGGAGAAAACGCCATCAGTGTTGAAGAAGGGATTGTCAAAGGAAGAGGGTGAACAATTGATTGAAAAGATGAAGGCACTCGGTGCAAAAGTCATCTTGGAATGA

Protein sequence

MHLVLRTRLLLPGVFTNIVRSPVAAFNLNGLHRNYAQPARIEEEEEEVEIDQRRLPADYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKPGAAGLAGMGMKASAAAAKEEKKPEKTVYELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE
BLAST of Carg06829 vs. NCBI nr
Match: XP_022954769.1 (uncharacterized protein LOC111456924 [Cucurbita moschata] >XP_022954770.1 uncharacterized protein LOC111456924 [Cucurbita moschata])

HSP 1 Score: 390.2 bits (1001), Expect = 4.5e-105
Identity = 210/211 (99.53%), Postives = 210/211 (99.53%), Query Frame = 0

Query: 1   MHLVLRTRLLLPGVFTNIVRSPVAAFNLNGLHRNYAQPARIEEEEEEVEIDQRRLPADYD 60
           MHLVLRTR LLPGVFTNIVRSPVAAFNLNGLHRNYAQPARIEEEEEEVEIDQRRLPADYD
Sbjct: 1   MHLVLRTRHLLPGVFTNIVRSPVAAFNLNGLHRNYAQPARIEEEEEEVEIDQRRLPADYD 60

Query: 61  PANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKPGAAG 120
           PANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKPGAAG
Sbjct: 61  PANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKPGAAG 120

Query: 121 LAGMGMKASAAAAKEEKKPEKTVYELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLVEK 180
           LAGMGMKASAAAAKEEKKPEKTVYELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLVEK
Sbjct: 121 LAGMGMKASAAAAKEEKKPEKTVYELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLVEK 180

Query: 181 TPSVLKKGLSKEEGEQLIEKMKALGAKVILE 212
           TPSVLKKGLSKEEGEQLIEKMKALGAKVILE
Sbjct: 181 TPSVLKKGLSKEEGEQLIEKMKALGAKVILE 211

BLAST of Carg06829 vs. NCBI nr
Match: XP_022994471.1 (uncharacterized protein LOC111490181 [Cucurbita maxima])

HSP 1 Score: 384.4 bits (986), Expect = 2.5e-103
Identity = 208/211 (98.58%), Postives = 208/211 (98.58%), Query Frame = 0

Query: 1   MHLVLRTRLLLPGVFTNIVRSPVAAFNLNGLHRNYAQPARIEEEEEEVEIDQRRLPADYD 60
           MHLVLRTR LLPGVFTNIVRSPVAAFNLNGLHRNYAQPA IEEEEEEVEIDQRRLPADYD
Sbjct: 1   MHLVLRTRHLLPGVFTNIVRSPVAAFNLNGLHRNYAQPAWIEEEEEEVEIDQRRLPADYD 60

Query: 61  PANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKPGAAG 120
           PANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKPGAAG
Sbjct: 61  PANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKPGAAG 120

Query: 121 LAGMGMKASAAAAKEEKKPEKTVYELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLVEK 180
           LAGMGMKASAAAAKE KKPEKTVYELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLVEK
Sbjct: 121 LAGMGMKASAAAAKEVKKPEKTVYELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLVEK 180

Query: 181 TPSVLKKGLSKEEGEQLIEKMKALGAKVILE 212
           TPSVLKKGLSKEEGEQLIEKMKALGAKVILE
Sbjct: 181 TPSVLKKGLSKEEGEQLIEKMKALGAKVILE 211

BLAST of Carg06829 vs. NCBI nr
Match: XP_023542773.1 (uncharacterized protein LOC111802581 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 384.4 bits (986), Expect = 2.5e-103
Identity = 207/211 (98.10%), Postives = 208/211 (98.58%), Query Frame = 0

Query: 1   MHLVLRTRLLLPGVFTNIVRSPVAAFNLNGLHRNYAQPARIEEEEEEVEIDQRRLPADYD 60
           MHLVLRTR LLPGVFTNIVRSPV AFNLNGL RNYAQPARIEEEEEEVEIDQRRLPADYD
Sbjct: 1   MHLVLRTRHLLPGVFTNIVRSPVVAFNLNGLRRNYAQPARIEEEEEEVEIDQRRLPADYD 60

Query: 61  PANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKPGAAG 120
           PANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKPGAAG
Sbjct: 61  PANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKPGAAG 120

Query: 121 LAGMGMKASAAAAKEEKKPEKTVYELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLVEK 180
           LAGMGMKASAAA+KEEKKPEKTVYELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLVEK
Sbjct: 121 LAGMGMKASAAASKEEKKPEKTVYELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLVEK 180

Query: 181 TPSVLKKGLSKEEGEQLIEKMKALGAKVILE 212
           TPSVLKKGLSKEEGEQLIEKMKALGAKVILE
Sbjct: 181 TPSVLKKGLSKEEGEQLIEKMKALGAKVILE 211

BLAST of Carg06829 vs. NCBI nr
Match: XP_022137691.1 (uncharacterized protein LOC111009067 [Momordica charantia])

HSP 1 Score: 352.1 bits (902), Expect = 1.4e-93
Identity = 193/214 (90.19%), Postives = 198/214 (92.52%), Query Frame = 0

Query: 1   MHLVLRTRLLLPGVFTNIVRSPVAA---FNLNGLHRNYAQPARIEEEEEEVEIDQRRLPA 60
           MHLVLR R LLP VF N +RSP  A    N NGLHRNYAQPARIEEEE+EVEIDQRRLPA
Sbjct: 1   MHLVLRIRHLLPNVFANTIRSPAVALNPLNSNGLHRNYAQPARIEEEEDEVEIDQRRLPA 60

Query: 61  DYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKPG 120
           DYDPANFDPT+HRSPPTDRVFRLVDEISGLTLVEVAELS+ILRKKLGMTDMPVVGVMKPG
Sbjct: 61  DYDPANFDPTEHRSPPTDRVFRLVDEISGLTLVEVAELSTILRKKLGMTDMPVVGVMKPG 120

Query: 121 AAGLAGMGMKASAAAAKEEKKPEKTVYELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDL 180
           AAGL GM MKAS  AAKEEKKPEKTVYELKLESYEA+AKIKIIKEVRSFTDLGLKEAKDL
Sbjct: 121 AAGLGGMAMKAS-TAAKEEKKPEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDL 180

Query: 181 VEKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 212
           VEKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE
Sbjct: 181 VEKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 213

BLAST of Carg06829 vs. NCBI nr
Match: XP_021606023.1 (uncharacterized protein LOC110610418 [Manihot esculenta] >XP_021606024.1 uncharacterized protein LOC110610418 [Manihot esculenta] >XP_021606025.1 uncharacterized protein LOC110610418 [Manihot esculenta] >OAY54430.1 hypothetical protein MANES_03G074200 [Manihot esculenta])

HSP 1 Score: 291.6 bits (745), Expect = 2.2e-75
Identity = 161/216 (74.54%), Postives = 185/216 (85.65%), Query Frame = 0

Query: 1   MHLVLRTRLLLPGVFTNIVR----SPVAAFNLNG-LHRNYAQPARIEEEEEEVEIDQRRL 60
           M+L+ R R  +P  F+         P+    LNG L R +AQPAR++ EEEEVEIDQRRL
Sbjct: 1   MNLIFRLRHNIPNGFSAKPSFRPLVPLNFMKLNGALSRGFAQPARVDGEEEEVEIDQRRL 60

Query: 61  PADYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMK 120
           PADYDPA FDPT+HRSPPT+RVF+LVDEI+GLTLVEVAELSSI+ +K GMT++PVVGVMK
Sbjct: 61  PADYDPATFDPTEHRSPPTERVFKLVDEIAGLTLVEVAELSSIILRKKGMTELPVVGVMK 120

Query: 121 PGAAGLAGMGMKASAAAAKEEKKPEKTVYELKLESYEAAAKIKIIKEVRSFTDLGLKEAK 180
            GAAGLAGM MKA  AAAKEEKKPEKTV+ELKLESYEAA+KIKIIKEVRSFTDLGLKEAK
Sbjct: 121 AGAAGLAGMTMKAPTAAAKEEKKPEKTVFELKLESYEAASKIKIIKEVRSFTDLGLKEAK 180

Query: 181 DLVEKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 212
           DLVEKTPS+LK G+SKEEGE++IEKMKALGAKV++E
Sbjct: 181 DLVEKTPSILKAGVSKEEGEKIIEKMKALGAKVVME 216

BLAST of Carg06829 vs. TAIR10
Match: AT1G70190.1 (Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like)

HSP 1 Score: 235.0 bits (598), Expect = 4.4e-62
Identity = 135/214 (63.08%), Postives = 164/214 (76.64%), Query Frame = 0

Query: 1   MHLVLRTRLLLPGVFTNIVRSPVAAFNLNGLHRNYAQPARIEEEEEEVEIDQRRLPADYD 60
           M LVLR R  L     +   S ++  +  G +R+Y QPA+IE+EEEE E DQR+LP DYD
Sbjct: 1   MSLVLRFRQHL-----SQTSSRLSLLSRIGGYRSYTQPAKIEDEEEE-EFDQRKLPTDYD 60

Query: 61  PANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKPGA-- 120
           PA FDPT+HRSPPTDRVFRLVDEIS LTL+E++EL SI+ KK GMT++P V VMKPGA  
Sbjct: 61  PATFDPTEHRSPPTDRVFRLVDEISSLTLLEISELGSIIMKKKGMTELPTVAVMKPGAXX 120

Query: 121 -AGLAGMGMKASAAAAKEEKKPEKTVYELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDL 180
                      S +   EE K EKTV+E+KLES+EA+AKIKIIKE+RSFTDLGLKEAK L
Sbjct: 121 XXXXXXXXXXVSQSGVSEEAKVEKTVFEIKLESFEASAKIKIIKELRSFTDLGLKEAKAL 180

Query: 181 VEKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 212
           VEKTP++LK GLSKEEGE+++EK+KALGAKV+LE
Sbjct: 181 VEKTPAILKAGLSKEEGEKILEKLKALGAKVVLE 208

BLAST of Carg06829 vs. TAIR10
Match: AT4G36420.1 (Ribosomal protein L12 family protein)

HSP 1 Score: 136.7 bits (343), Expect = 1.6e-32
Identity = 77/146 (52.74%), Postives = 111/146 (76.03%), Query Frame = 0

Query: 69  HRSPPT--DRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKPGAAGLAGMGM 128
           + SP T  + V ++V+E+S LTL+E  +L+ ILR+KL ++++PV+  M PG + L G G 
Sbjct: 35  YSSPATQSENVSKIVNELSNLTLLETMDLTEILRQKLNISELPVMAAMMPGMS-LPGSGA 94

Query: 129 KASAAA-AKEEKKPEKTVYELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVL 188
             SA    KE+KK  KT +++ L++Y+A +KIK+IKEVR+ T LGLKEAKDLVEK P++L
Sbjct: 95  SKSAGGEGKEKKKEAKTAFDVMLQAYDAVSKIKVIKEVRTITALGLKEAKDLVEKAPTLL 154

Query: 189 KKGLSKEEGEQLIEKMKALGAKVILE 212
           KKG+SKEE E++IEK+KA+GAKV +E
Sbjct: 155 KKGVSKEEAEKIIEKLKAVGAKVAME 179

BLAST of Carg06829 vs. TAIR10
Match: AT4G37660.1 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein)

HSP 1 Score: 107.1 bits (266), Expect = 1.4e-23
Identity = 63/138 (45.65%), Postives = 95/138 (68.84%), Query Frame = 0

Query: 74  TDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKPGAAGLAGMGMKASAAAA 133
           T ++ R+ D++  L  +E+ + S +   K+G+         + G+A +A  G    A+A+
Sbjct: 39  TKKLERIADDLLKLNRIELYDYSLLFSHKIGLN--------RYGSA-VAVTGSVGDASAS 98

Query: 134 KEEKKPEKTVYELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKGLSKEE 193
            E K  EKT +++KLE +EAA+KIK+IKE+R+FTDLGLKEAK LVEK P ++K GL+KEE
Sbjct: 99  TETKTAEKTTFDVKLEKFEAASKIKVIKEIRAFTDLGLKEAKALVEKAPVIVKNGLTKEE 158

Query: 194 GEQLIEKMKALGAKVILE 212
            E+++EK+KA+GA V LE
Sbjct: 159 AEKIMEKLKAVGAIVALE 167

BLAST of Carg06829 vs. TAIR10
Match: AT3G06040.1 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein)

HSP 1 Score: 104.8 bits (260), Expect = 6.8e-23
Identity = 58/151 (38.41%), Postives = 93/151 (61.59%), Query Frame = 0

Query: 61  PANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKPGAAG 120
           P+ +DP   R  P+ ++  L + I+ L+  E  ++   L + L +    ++         
Sbjct: 44  PSVYDPYGPRPQPSSKIMELAERIAALSPEERKQIGPALNEHLRLPKQQMI--------S 103

Query: 121 LAGMGMKASAAAAKEEKKPEKTVYELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLVEK 180
             G+G K    A   E+K EKT +++KLE + A+ KIK+IKEVR+FT LGLKEAK+LVEK
Sbjct: 104 SDGIGAKQDTGAGNVEEKKEKTAFDVKLEKFNASDKIKVIKEVRTFTSLGLKEAKELVEK 163

Query: 181 TPSVLKKGLSKEEGEQLIEKMKALGAKVILE 212
            P++LK+G++KEE  ++I K+KA+G   ++E
Sbjct: 164 VPAILKQGVTKEEANEIIAKIKAVGGIAVME 186

BLAST of Carg06829 vs. TAIR10
Match: AT2G03130.1 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein)

HSP 1 Score: 94.0 bits (232), Expect = 1.2e-19
Identity = 52/83 (62.65%), Postives = 64/83 (77.11%), Query Frame = 0

Query: 129 SAAAAKEEKKPEKTVYELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKG 188
           S   A E  K EKTV+E+KLES+EA AKIKIIKEVR    +GLKEA  LV K P+VLK G
Sbjct: 9   SGGGANEGAKAEKTVFEVKLESFEARAKIKIIKEVRRIIGVGLKEAMKLVVKAPTVLKTG 68

Query: 189 LSKEEGEQLIEKMKALGAKVILE 212
           LSKEEGE+++EK+ ALGA+ +L+
Sbjct: 69  LSKEEGEEVVEKLNALGAEAVLQ 91

BLAST of Carg06829 vs. Swiss-Prot
Match: sp|P41189|RL7_LIBAF (50S ribosomal protein L7/L12 OS=Liberibacter africanus OX=34020 GN=rplL PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.8e-17
Identity = 57/131 (43.51%), Postives = 82/131 (62.60%), Query Frame = 0

Query: 80  LVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKPGAAGLAGMGMKASAAAAKEEKKP 139
           +V+++S LTL++ AELS  L ++ G++    V V+             ASAA        
Sbjct: 7   IVEKLSSLTLLQAAELSKRLEEEWGVSAAAPVAVV-------------ASAAGESAAAVA 66

Query: 140 EKTVYELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKGLSKEEGEQLIE 199
           EKT +E+ LE ++A  KI +IKEVR+ T+LGLKEAKD VE  P  LK G+SK+E E+L +
Sbjct: 67  EKTEFEVFLEGFDAKKKISVIKEVRAITELGLKEAKDFVESAPKSLKTGVSKDEAEELKK 124

Query: 200 KMKALGAKVIL 211
           K++A GA +IL
Sbjct: 127 KLEAAGATIIL 124

BLAST of Carg06829 vs. Swiss-Prot
Match: sp|P53163|MNP1_YEAST (54S ribosomal protein L12, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=MNP1 PE=1 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.9e-15
Identity = 61/148 (41.22%), Postives = 93/148 (62.84%), Query Frame = 0

Query: 72  PPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTD--MPVVGVMKPGAAGLAGMGMKAS 131
           P   ++ ++V +IS LTL+E + L + L+  L + +  MP+ G M  GAAG AG G   S
Sbjct: 49  PVDPKISKIVQDISQLTLLETSSLINELKTVLNIPEISMPMGGFM-AGAAG-AGAGNVPS 108

Query: 132 A-----AAAKEEKKPE-KTVYELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLVEKTPS 191
           +     + A+EE KPE KTV+ +KL+S++   K K+IKEV+    L L EAK  VE  P 
Sbjct: 109 STGEAGSGAEEEAKPEAKTVFTVKLDSFDTKTKAKVIKEVKGLLGLSLVEAKKFVEAAPK 168

Query: 192 VLKKGLSKEEGEQLIEKMKALGAKVILE 212
           VLK+ ++K++ E++ + ++ LGAKV LE
Sbjct: 169 VLKENVAKDDAEKIKKTLEDLGAKVSLE 194

BLAST of Carg06829 vs. Swiss-Prot
Match: sp|Q9L5W4|RL7_LIBAC (50S ribosomal protein L7/L12 OS=Liberibacter africanus subsp. capensis OX=119494 GN=rplL PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 3.8e-15
Identity = 53/131 (40.46%), Postives = 80/131 (61.07%), Query Frame = 0

Query: 80  LVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKPGAAGLAGMGMKASAAAAKEEKKP 139
           +V+++S LTL++ AELS  L ++ G++    V  + P              A   +    
Sbjct: 7   IVEKLSSLTLIQAAELSKRLEEEWGVSASAPVAAVAP--------------AVXXDVAVA 66

Query: 140 EKTVYELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKGLSKEEGEQLIE 199
           EKT +E+ LES++A +KI +IKEVRS TDLGLKEAK+LVE     L+ G+SK+E  +L +
Sbjct: 67  EKTEFEVFLESFDAKSKISVIKEVRSITDLGLKEAKELVEALLKSLRTGVSKDEANELKK 123

Query: 200 KMKALGAKVIL 211
           K++A GA + L
Sbjct: 127 KLEAAGATISL 123

BLAST of Carg06829 vs. Swiss-Prot
Match: sp|P36247|RL7_LIBAS (50S ribosomal protein L7/L12 OS=Liberibacter asiaticus OX=34021 GN=rplL PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 5.0e-15
Identity = 56/128 (43.75%), Postives = 82/128 (64.06%), Query Frame = 0

Query: 80  LVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKPGAAGLAGMGMKASAAAAKEEKKP 139
           +V+++S LTL+E AELS  L K+ G++    V V+ P AA       +A +AA+      
Sbjct: 7   IVEKLSSLTLIEAAELSKRLEKEWGVSASAPVSVVAPVAA-------EAGSAAS------ 66

Query: 140 EKTVYELKLESY-EAAAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKGLSKEEGEQLI 199
           EKT +E+ L+ + +   KI +IKEVR+ TDLGLKEAK+LVE  P  LK GLSK+E  ++ 
Sbjct: 67  EKTEFEVVLKGFDDPKKKIAVIKEVRAITDLGLKEAKELVESAPKSLKTGLSKDEANEMK 121

Query: 200 EKMKALGA 207
           +K++  GA
Sbjct: 127 KKLEDAGA 121

BLAST of Carg06829 vs. Swiss-Prot
Match: sp|A1USC7|RL7_BARBK (50S ribosomal protein L7/L12 OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) OX=360095 GN=rplL PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.5e-14
Identity = 56/133 (42.11%), Postives = 84/133 (63.16%), Query Frame = 0

Query: 79  RLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKPGAAGLAGMGMKASAAAAKEEKK 138
           ++V+++S LT++E AELS +L +K G++    V V   G+A          AA A E   
Sbjct: 6   KIVEDLSNLTVLEAAELSKLLEEKWGVSAAAPVAVAAVGSA----------AAPAAE--- 65

Query: 139 PEKTVYELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKGLSKEEGEQLI 198
            EKT +++ L     A KI +IKEVR+ T LGLKEAKDLVE  P  +K+G+SK+E E++ 
Sbjct: 66  -EKTEFDVVLVD-GGAQKINVIKEVRALTGLGLKEAKDLVEGAPKPIKEGVSKDEAEKIK 123

Query: 199 EKMKALGAKVILE 212
            +++A GAK+ L+
Sbjct: 126 AQLEAAGAKIELK 123

BLAST of Carg06829 vs. TrEMBL
Match: tr|A0A2C9W5G7|A0A2C9W5G7_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_03G074200 PE=3 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 1.4e-75
Identity = 161/216 (74.54%), Postives = 185/216 (85.65%), Query Frame = 0

Query: 1   MHLVLRTRLLLPGVFTNIVR----SPVAAFNLNG-LHRNYAQPARIEEEEEEVEIDQRRL 60
           M+L+ R R  +P  F+         P+    LNG L R +AQPAR++ EEEEVEIDQRRL
Sbjct: 1   MNLIFRLRHNIPNGFSAKPSFRPLVPLNFMKLNGALSRGFAQPARVDGEEEEVEIDQRRL 60

Query: 61  PADYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMK 120
           PADYDPA FDPT+HRSPPT+RVF+LVDEI+GLTLVEVAELSSI+ +K GMT++PVVGVMK
Sbjct: 61  PADYDPATFDPTEHRSPPTERVFKLVDEIAGLTLVEVAELSSIILRKKGMTELPVVGVMK 120

Query: 121 PGAAGLAGMGMKASAAAAKEEKKPEKTVYELKLESYEAAAKIKIIKEVRSFTDLGLKEAK 180
            GAAGLAGM MKA  AAAKEEKKPEKTV+ELKLESYEAA+KIKIIKEVRSFTDLGLKEAK
Sbjct: 121 AGAAGLAGMTMKAPTAAAKEEKKPEKTVFELKLESYEAASKIKIIKEVRSFTDLGLKEAK 180

Query: 181 DLVEKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 212
           DLVEKTPS+LK G+SKEEGE++IEKMKALGAKV++E
Sbjct: 181 DLVEKTPSILKAGVSKEEGEKIIEKMKALGAKVVME 216

BLAST of Carg06829 vs. TrEMBL
Match: tr|W9S8M4|W9S8M4_9ROSA (50S ribosomal protein OS=Morus notabilis OX=981085 GN=L484_005958 PE=3 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 1.6e-74
Identity = 161/216 (74.54%), Postives = 180/216 (83.33%), Query Frame = 0

Query: 1   MHLVLRTRLLLP-GVFTNIVRSPVAAF---NLNGLHRNYAQPARIEEEEEEVEIDQRRLP 60
           M LVLR +  LP G +    RS V A    N+NGL +NY QPA  EEE+EEVE DQRRLP
Sbjct: 1   MSLVLRLKHHLPNGFYRKPFRSTVVALNPGNINGLWKNYGQPAIKEEEDEEVEFDQRRLP 60

Query: 61  ADYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKP 120
            DYDPA FDP++HRSPPT+RVFRLVDEISGLTL EVAEL +I  +K GMT+ P VGVMKP
Sbjct: 61  TDYDPATFDPSEHRSPPTERVFRLVDEISGLTLAEVAELGAIFMRKRGMTEPPSVGVMKP 120

Query: 121 GAAGLAGMGMKASAA-AAKEEKKPEKTVYELKLESYEAAAKIKIIKEVRSFTDLGLKEAK 180
           GAAGLAGM +   AA AAKEEKKPEKTV+ELKLESYEAA+KIK+IKEVRSFTDLGLKEAK
Sbjct: 121 GAAGLAGMALATKAATAAKEEKKPEKTVFELKLESYEAASKIKLIKEVRSFTDLGLKEAK 180

Query: 181 DLVEKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 212
           DLVEKTPS+LKKGLSKEEGEQL+EK+K LGAKV+LE
Sbjct: 181 DLVEKTPSILKKGLSKEEGEQLVEKLKELGAKVVLE 216

BLAST of Carg06829 vs. TrEMBL
Match: tr|A0A200QNQ0|A0A200QNQ0_9MAGN (Ribosomal protein L7/L12 OS=Macleaya cordata OX=56857 GN=BVC80_1771g22 PE=3 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 1.9e-72
Identity = 145/185 (78.38%), Postives = 172/185 (92.97%), Query Frame = 0

Query: 27  NLNGLHRNYAQPARIEEEEEEVEIDQRRLPADYDPANFDPTQHRSPPTDRVFRLVDEISG 86
           NL+ ++RN++ PA+++EEEE   IDQ++LPADYDP+NFDPT+HRSPP+DRVFRLVDE+S 
Sbjct: 28  NLDYVYRNFSLPAKVDEEEELEMIDQKKLPADYDPSNFDPTEHRSPPSDRVFRLVDEVSS 87

Query: 87  LTLVEVAELSSILRKKLGMTDMPVVGVMKPGAAGLAGMGMKASAAAAKEEKKPEKTVYEL 146
           LTLVE+AELSSIL KKLGM + PVVGVMKPGAAGLAG+ MKAS A+AKEEKKPEKTV+EL
Sbjct: 88  LTLVEIAELSSILMKKLGMKEAPVVGVMKPGAAGLAGINMKASTASAKEEKKPEKTVFEL 147

Query: 147 KLESYEAAAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKGLSKEEGEQLIEKMKALGA 206
           KLE++EAA+KIKIIKEVRSFTDLGLKEAKDLVEKTPSV+K G+SKEE EQ+IEKMKALGA
Sbjct: 148 KLEAFEAASKIKIIKEVRSFTDLGLKEAKDLVEKTPSVIKTGVSKEEAEQIIEKMKALGA 207

Query: 207 KVILE 212
           KV++E
Sbjct: 208 KVVME 212

BLAST of Carg06829 vs. TrEMBL
Match: tr|A0A2P4HL83|A0A2P4HL83_QUESU (50s ribosomal protein l7/l12 OS=Quercus suber OX=58331 GN=CFP56_02041 PE=3 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 1.9e-72
Identity = 155/214 (72.43%), Postives = 180/214 (84.11%), Query Frame = 0

Query: 1   MHLVLRTRLLLPGVFTNIVRSPVA---AFNLNGLHRNYAQPARIEEEEEEVEIDQRRLPA 60
           M  +LR R  LP     + R+PV    A N +G  R++ QPAR+ EEEEE EIDQRRLP 
Sbjct: 1   MSFILRFRHHLP---NGLSRNPVVALNAINFSGFTRSFGQPARV-EEEEEXEIDQRRLPT 60

Query: 61  DYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKPG 120
           DYDPA FDPT+HRSPPT+RVFRLVDE+SGLTL E AEL +I+ +K+GM + P VGV+KPG
Sbjct: 61  DYDPATFDPTEHRSPPTERVFRLVDEVSGLTLAEAAELGAIMMRKMGMKEPPTVGVLKPG 120

Query: 121 AAGLAGMGMKASAAAAKEEKKPEKTVYELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDL 180
           AAGLAGM +K S+AAAKEEKKPEKTV+E+KLESYEA+AKIKIIKEVR FTDLGLKEAKDL
Sbjct: 121 AAGLAGMAVK-SSAAAKEEKKPEKTVFEIKLESYEASAKIKIIKEVRGFTDLGLKEAKDL 180

Query: 181 VEKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 212
           VEKTPSVLK+GLSKEEGEQ+IEK+KALGAKV+LE
Sbjct: 181 VEKTPSVLKRGLSKEEGEQIIEKLKALGAKVVLE 209

BLAST of Carg06829 vs. TrEMBL
Match: tr|A0A2R6QMF2|A0A2R6QMF2_ACTCH (50S ribosomal protein like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc15365 PE=3 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 9.6e-72
Identity = 160/216 (74.07%), Postives = 180/216 (83.33%), Query Frame = 0

Query: 1   MHLVLRTRLLLP-GVFTNIVRSPVAAFNLNGLH---RNYAQPARIE-EEEEEVEIDQRRL 60
           M  + R R  LP G+    + S + A N   L+   R++ QPAR E EE+EEVEIDQRRL
Sbjct: 1   MSFIKRVRHHLPYGLCRKPILSSMVALNCVNLNVGIRHFTQPARNEDEEDEEVEIDQRRL 60

Query: 61  PADYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMK 120
           PADYDPA FDPTQHRSPPT RVFRLVDEI+GLTLVE+AELSSIL KKLGM D PVVGVMK
Sbjct: 61  PADYDPATFDPTQHRSPPTGRVFRLVDEIAGLTLVEIAELSSILMKKLGMKDPPVVGVMK 120

Query: 121 PGAAGLAGMGMKASAAAAKEEKKPEKTVYELKLESYEAAAKIKIIKEVRSFTDLGLKEAK 180
           PGAAGLAG  MKA   AAKEEKKPEKTV+ELKLESYEAA+KIKIIKE+RSFTDLGLKEAK
Sbjct: 121 PGAAGLAGATMKA-PTAAKEEKKPEKTVFELKLESYEAASKIKIIKEIRSFTDLGLKEAK 180

Query: 181 DLVEKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 212
           DLVEK P+V KKG+SKEEGEQ+I+KMKA+GAKV++E
Sbjct: 181 DLVEKAPAVFKKGVSKEEGEQIIDKMKAVGAKVVME 215

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022954769.14.5e-10599.53uncharacterized protein LOC111456924 [Cucurbita moschata] >XP_022954770.1 unchar... [more]
XP_022994471.12.5e-10398.58uncharacterized protein LOC111490181 [Cucurbita maxima][more]
XP_023542773.12.5e-10398.10uncharacterized protein LOC111802581 [Cucurbita pepo subsp. pepo][more]
XP_022137691.11.4e-9390.19uncharacterized protein LOC111009067 [Momordica charantia][more]
XP_021606023.12.2e-7574.54uncharacterized protein LOC110610418 [Manihot esculenta] >XP_021606024.1 unchara... [more]
Match NameE-valueIdentityDescription
AT1G70190.14.4e-6263.08Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/a... [more]
AT4G36420.11.6e-3252.74Ribosomal protein L12 family protein[more]
AT4G37660.11.4e-2345.65Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr... [more]
AT3G06040.16.8e-2338.41Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr... [more]
AT2G03130.11.2e-1962.65Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr... [more]
Match NameE-valueIdentityDescription
sp|P41189|RL7_LIBAF1.8e-1743.5150S ribosomal protein L7/L12 OS=Liberibacter africanus OX=34020 GN=rplL PE=3 SV=... [more]
sp|P53163|MNP1_YEAST2.9e-1541.2254S ribosomal protein L12, mitochondrial OS=Saccharomyces cerevisiae (strain ATC... [more]
sp|Q9L5W4|RL7_LIBAC3.8e-1540.4650S ribosomal protein L7/L12 OS=Liberibacter africanus subsp. capensis OX=119494... [more]
sp|P36247|RL7_LIBAS5.0e-1543.7550S ribosomal protein L7/L12 OS=Liberibacter asiaticus OX=34021 GN=rplL PE=3 SV=... [more]
sp|A1USC7|RL7_BARBK1.5e-1442.1150S ribosomal protein L7/L12 OS=Bartonella bacilliformis (strain ATCC 35685 / KC... [more]
Match NameE-valueIdentityDescription
tr|A0A2C9W5G7|A0A2C9W5G7_MANES1.4e-7574.54Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_03G074200 PE=3 SV=... [more]
tr|W9S8M4|W9S8M4_9ROSA1.6e-7474.5450S ribosomal protein OS=Morus notabilis OX=981085 GN=L484_005958 PE=3 SV=1[more]
tr|A0A200QNQ0|A0A200QNQ0_9MAGN1.9e-7278.38Ribosomal protein L7/L12 OS=Macleaya cordata OX=56857 GN=BVC80_1771g22 PE=3 SV=1[more]
tr|A0A2P4HL83|A0A2P4HL83_QUESU1.9e-7272.4350s ribosomal protein l7/l12 OS=Quercus suber OX=58331 GN=CFP56_02041 PE=3 SV=1[more]
tr|A0A2R6QMF2|A0A2R6QMF2_ACTCH9.6e-7274.0750S ribosomal protein like OS=Actinidia chinensis var. chinensis OX=1590841 GN=C... [more]
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR036235Ribosomal_L7/L12_oligo_N_sf
IPR000206Ribosomal_L7/12
IPR015608Put_Ribosomal_L7/L12_plants
IPR008932Ribosomal_L7/L12_oligo
IPR013823Ribosomal_L7/L12_C
IPR014719Ribosomal_L7/12_C/ClpS-like
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg06829-RACarg06829-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014719Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-likeGENE3DG3DSA:3.30.1390.10coord: 137..210
e-value: 1.1E-23
score: 85.0
IPR014719Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-likeSUPERFAMILYSSF54736ClpS-likecoord: 144..210
IPR013823Ribosomal protein L7/L12, C-terminalPFAMPF00542Ribosomal_L12coord: 145..210
e-value: 3.6E-20
score: 72.0
IPR013823Ribosomal protein L7/L12, C-terminalPRODOMPD001326coord: 148..210
e-value: 9.0E-22
score: 254.0
IPR008932Ribosomal protein L7/L12, oligomerisationPFAMPF16320Ribosomal_L12_Ncoord: 80..120
e-value: 1.1E-7
score: 31.4
IPR015608Putative ribosomal protein L7/L12, plantsPANTHERPTHR24089:SF38750S RIBOSOMAL PROTEIN L7/L12-RELATEDcoord: 55..211
NoneNo IPR availablePANTHERPTHR24089FAMILY NOT NAMEDcoord: 55..211
IPR000206Ribosomal protein L7/L12HAMAPMF_00368Ribosomal_L7_L12coord: 74..211
score: 17.422
IPR000206Ribosomal protein L7/L12CDDcd00387Ribosomal_L7_L12coord: 76..210
e-value: 1.47633E-41
score: 138.057
IPR036235Ribosomal protein L7/L12, oligomerisation domain superfamilySUPERFAMILYSSF48300Ribosomal protein L7/12, oligomerisation (N-terminal) domaincoord: 79..120