Carg07640 (gene) Silver-seed gourd

Overview
NameCarg07640
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Description50s ribosomal protein l7/l12
LocationCucurbita_argyrosperma_scaffold_024 : 712939 .. 713580 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGCTTAGTTTTAAGAATAAGTCATCTCCTACCCAATGTGTTGGCAAACACCTTTCGCTCTCCTGCACTTGCCCTCAATCCTCTCAATGTAAATGGATTACATAGAAATTTTTCTCAACCTGCTCGGATAGAGGAGGAGGAGGAGGTGGAAATTGACCAGAGAAGGCTTCCAGCTGACTACGATCCAGCTAATTTTGATCCAACACAGCATCGTAGTCCTCCAACCGATCGCGTTTTTAGGCTTGTAGATGAAATATCTGGACTCACATTAGTTGAAGTTGCTGAATTATCTTCCATTTTGAGGAAAAAATTAGGAATGACAGACATGCCAGTTGTTGGAGTTATGAAGGCAGGAGCTGCCGGATTGGCTGGAATGGCAACAAAGGCCTCATCAGCAACTGCCAAGGAGGAGAAGAAGACAGAAAAGACTGTTTTTGAGTTGAAACTAGAGTCTTATGAAGCGGCTGCAAAGATTAAAATTATCAAGGAGGTAAGAAGTTTCACTGATTTAGGCCTTAAAGAAGCGAAGGATCTAGTGGAGAAAACCCCGTCGGTGTTGAAGAAGGGACTATCAAAGGAAGAGGGTGAACAACTAATTGAAAAAATGAAGGCTCTTGGTGCAAAGGTGATTTTGGAATGA

mRNA sequence

ATGCGCTTAGTTTTAAGAATAAGTCATCTCCTACCCAATGTGTTGGCAAACACCTTTCGCTCTCCTGCACTTGCCCTCAATCCTCTCAATGTAAATGGATTACATAGAAATTTTTCTCAACCTGCTCGGATAGAGGAGGAGGAGGAGGTGGAAATTGACCAGAGAAGGCTTCCAGCTGACTACGATCCAGCTAATTTTGATCCAACACAGCATCGTAGTCCTCCAACCGATCGCGTTTTTAGGCTTGTAGATGAAATATCTGGACTCACATTAGTTGAAGTTGCTGAATTATCTTCCATTTTGAGGAAAAAATTAGGAATGACAGACATGCCAGTTGTTGGAGTTATGAAGGCAGGAGCTGCCGGATTGGCTGGAATGGCAACAAAGGCCTCATCAGCAACTGCCAAGGAGGAGAAGAAGACAGAAAAGACTGTTTTTGAGTTGAAACTAGAGTCTTATGAAGCGGCTGCAAAGATTAAAATTATCAAGGAGGTAAGAAGTTTCACTGATTTAGGCCTTAAAGAAGCGAAGGATCTAGTGGAGAAAACCCCGTCGGTGTTGAAGAAGGGACTATCAAAGGAAGAGGGTGAACAACTAATTGAAAAAATGAAGGCTCTTGGTGCAAAGGTGATTTTGGAATGA

Coding sequence (CDS)

ATGCGCTTAGTTTTAAGAATAAGTCATCTCCTACCCAATGTGTTGGCAAACACCTTTCGCTCTCCTGCACTTGCCCTCAATCCTCTCAATGTAAATGGATTACATAGAAATTTTTCTCAACCTGCTCGGATAGAGGAGGAGGAGGAGGTGGAAATTGACCAGAGAAGGCTTCCAGCTGACTACGATCCAGCTAATTTTGATCCAACACAGCATCGTAGTCCTCCAACCGATCGCGTTTTTAGGCTTGTAGATGAAATATCTGGACTCACATTAGTTGAAGTTGCTGAATTATCTTCCATTTTGAGGAAAAAATTAGGAATGACAGACATGCCAGTTGTTGGAGTTATGAAGGCAGGAGCTGCCGGATTGGCTGGAATGGCAACAAAGGCCTCATCAGCAACTGCCAAGGAGGAGAAGAAGACAGAAAAGACTGTTTTTGAGTTGAAACTAGAGTCTTATGAAGCGGCTGCAAAGATTAAAATTATCAAGGAGGTAAGAAGTTTCACTGATTTAGGCCTTAAAGAAGCGAAGGATCTAGTGGAGAAAACCCCGTCGGTGTTGAAGAAGGGACTATCAAAGGAAGAGGGTGAACAACTAATTGAAAAAATGAAGGCTCTTGGTGCAAAGGTGATTTTGGAATGA

Protein sequence

MRLVLRISHLLPNVLANTFRSPALALNPLNVNGLHRNFSQPARIEEEEEVEIDQRRLPADYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKAGAAGLAGMATKASSATAKEEKKTEKTVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE
Homology
[Close]
BLAST of Carg07640 vs. NCBI nr
Match: XP_023519323.1 (uncharacterized protein LOC111782753 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 327.0 bits (837), Expect = 4.7e-86
Identity = 210/213 (98.59%), Postives = 211/213 (99.06%), Query Frame = 0 

Query: 1   MRLVLRISHLLPNVLANTFRSPALALNPLNVNGLHRNFSQPARIEEEEEVEIDQRRLPAD 60
           MRLVLRISHLLPNVLANTFRSPALA NPLNVNGLHRNF+Q ARIEEEEEVEIDQRRLPAD
Sbjct: 1   MRLVLRISHLLPNVLANTFRSPALAFNPLNVNGLHRNFAQSARIEEEEEVEIDQRRLPAD 60

Query: 61  YDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGXXXXXX 120
           YDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGXXXXXX
Sbjct: 61  YDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLV 180
           XXXXXXXXXXXXXXXXXXXXXXXXVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLV
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLV 180

Query: 181 EKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 214
           EKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE
Sbjct: 181 EKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 213

[Close]
BLAST of Carg07640 vs. NCBI nr
Match: XP_022924112.1 (uncharacterized protein LOC111431646 [Cucurbita moschata])

HSP 1 Score: 326.6 bits (836), Expect = 6.1e-86
Identity = 210/213 (98.59%), Postives = 212/213 (99.53%), Query Frame = 0 

Query: 1   MRLVLRISHLLPNVLANTFRSPALALNPLNVNGLHRNFSQPARIEEEEEVEIDQRRLPAD 60
           MRLVLRISHLLPNVLANTFRSPALALNPLNVNGLHR+FSQPA IEEEEEVEIDQRRLPAD
Sbjct: 1   MRLVLRISHLLPNVLANTFRSPALALNPLNVNGLHRDFSQPAWIEEEEEVEIDQRRLPAD 60

Query: 61  YDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGXXXXXX 120
           YDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRK+LGMTDMPVVGXXXXXX
Sbjct: 61  YDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKRLGMTDMPVVGXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLV 180
           XXXXXXXXXXXXXXXXXXXXXXXXVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLV
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLV 180

Query: 181 EKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 214
           EKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE
Sbjct: 181 EKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 213

[Close]
BLAST of Carg07640 vs. NCBI nr
Match: XP_023001011.1 (uncharacterized protein LOC111495277 [Cucurbita maxima] >XP_023001013.1 uncharacterized protein LOC111495277 [Cucurbita maxima])

HSP 1 Score: 320.5 bits (820), Expect = 4.4e-84
Identity = 206/213 (96.71%), Postives = 208/213 (97.65%), Query Frame = 0 

Query: 1   MRLVLRISHLLPNVLANTFRSPALALNPLNVNGLHRNFSQPARIEEEEEVEIDQRRLPAD 60
           MRLVLRISHLLPNVLANTFRSPALALNPLNVNGLHRNF+QPARI EEEEVEIDQRRLPAD
Sbjct: 1   MRLVLRISHLLPNVLANTFRSPALALNPLNVNGLHRNFAQPARI-EEEEVEIDQRRLPAD 60

Query: 61  YDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGXXXXXX 120
           YD ANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLG+TDMPVVG   XXX
Sbjct: 61  YDLANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGLTDMPVVGVMKXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLV 180
           XXXXXXXXXXXXXXXXXXXXXXXXVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLV
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLV 180

Query: 181 EKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 214
           EKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE
Sbjct: 181 EKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 212

[Close]
BLAST of Carg07640 vs. NCBI nr
Match: XP_022137691.1 (uncharacterized protein LOC111009067 [Momordica charantia])

HSP 1 Score: 305.8 bits (782), Expect = 1.1e-79
Identity = 171/214 (79.91%), Postives = 178/214 (83.18%), Query Frame = 0 

Query: 1   MRLVLRISHLLPNVLANTFRSPALALNPLNVNGLHRNFSQPARIEEEE-EVEIDQRRLPA 60
           M LVLRI HLLPNV ANT RSPA+ALNPLN NGLHRN++QPARIEEEE EVEIDQRRLPA
Sbjct: 1   MHLVLRIRHLLPNVFANTIRSPAVALNPLNSNGLHRNYAQPARIEEEEDEVEIDQRRLPA 60

Query: 61  DYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGXXXXX 120
           DYDPANFDPT+HRSPPTDRVFRLVDEISGLTLVEVAELS+ILRKKLGMTDMPVVG     
Sbjct: 61  DYDPANFDPTEHRSPPTDRVFRLVDEISGLTLVEVAELSTILRKKLGMTDMPVVG-VMKP 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDL 180
                                    V+ELKLESYEA+AKIKIIKEVRSFTDLGLKEAKDL
Sbjct: 121 GAAGLGGMAMKASTAAKEEKKPEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDL 180

Query: 181 VEKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 214
           VEKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE
Sbjct: 181 VEKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 213

[Close]
BLAST of Carg07640 vs. NCBI nr
Match: XP_022954769.1 (uncharacterized protein LOC111456924 [Cucurbita moschata] >XP_022954770.1 uncharacterized protein LOC111456924 [Cucurbita moschata])

HSP 1 Score: 290.8 bits (743), Expect = 3.7e-75
Identity = 165/214 (77.10%), Postives = 169/214 (78.97%), Query Frame = 0 

Query: 1   MRLVLRISHLLPNVLANTFRSPALALNPLNVNGLHRNFSQPARI-EEEEEVEIDQRRLPA 60
           M LVLR  HLLP V  N  RSP  A    N+NGLHRN++QPARI EEEEEVEIDQRRLPA
Sbjct: 1   MHLVLRTRHLLPGVFTNIVRSPVAA---FNLNGLHRNYAQPARIEEEEEEVEIDQRRLPA 60

Query: 61  DYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGXXXXX 120
           DYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVG     
Sbjct: 61  DYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKPG 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDL 180
                                    V+ELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDL
Sbjct: 121 AAGLAGMGMKASAAAAKEEKKPEKTVYELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDL 180

Query: 181 VEKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 214
           VEKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE
Sbjct: 181 VEKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 211

[Close]
BLAST of Carg07640 vs. TAIR10
Match: AT1G70190.1 (Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like)

HSP 1 Score: 212.2 bits (539), Expect = 3.1e-55
Identity = 127/191 (66.49%), Postives = 154/191 (80.63%), Query Frame = 0 

Query: 26  LNPLNVNGLHRNFSQPARIEEEEEVEIDQRRLPADYDPANFDPTQHRSPPTDRVFRLVDE 85
           L+ L+  G +R+++QPA+IE+EEE E DQR+LP DYDPA FDPT+HRSPPTDRVFRLVDE
Sbjct: 18  LSLLSRIGGYRSYTQPAKIEDEEEEEFDQRKLPTDYDPATFDPTEHRSPPTDRVFRLVDE 77

Query: 86  ISGLTLVEVAELSSILRKKLGMTDMPVVG---XXXXXXXXXXXXXXXXXXXXXXXXXXXX 145
           IS LTL+E++EL SI+ KK GMT++P V       XXXXXXXXXXXX             
Sbjct: 78  ISSLTLLEISELGSIIMKKKGMTELPTVAVMKPGAXXXXXXXXXXXXVSQSGVSEEAKVE 137

Query: 146 XXVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKGLSKEEGEQLIEK 205
             VFE+KLES+EA+AKIKIIKE+RSFTDLGLKEAK LVEKTP++LK GLSKEEGE+++EK
Sbjct: 138 KTVFEIKLESFEASAKIKIIKELRSFTDLGLKEAKALVEKTPAILKAGLSKEEGEKILEK 197

Query: 206 MKALGAKVILE 214
           +KALGAKV+LE
Sbjct: 198 LKALGAKVVLE 208

[Close]
BLAST of Carg07640 vs. TAIR10
Match: AT4G36420.1 (Ribosomal protein L12 family protein)

HSP 1 Score: 115.9 bits (289), Expect = 3.0e-26
Identity = 64/145 (44.14%), Postives = 95/145 (65.52%), Query Frame = 0 

Query: 71  HRSPPT--DRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGXXXXXXXXXXXXXX 130
           + SP T  + V ++V+E+S LTL+E  +L+ ILR+KL ++++PV+               
Sbjct: 35  YSSPATQSENVSKIVNELSNLTLLETMDLTEILRQKLNISELPVMAAMMPGMSLPGSGAS 94

Query: 131 XXXXXXXXXXXXXXXXVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLK 190
                            F++ L++Y+A +KIK+IKEVR+ T LGLKEAKDLVEK P++LK
Sbjct: 95  KSAGGEGKEKKKEAKTAFDVMLQAYDAVSKIKVIKEVRTITALGLKEAKDLVEKAPTLLK 154

Query: 191 KGLSKEEGEQLIEKMKALGAKVILE 214
           KG+SKEE E++IEK+KA+GAKV +E
Sbjct: 155 KGVSKEEAEKIIEKLKAVGAKVAME 179

[Close]
BLAST of Carg07640 vs. TAIR10
Match: AT4G37660.1 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein)

HSP 1 Score: 90.9 bits (224), Expect = 1.0e-18
Identity = 45/68 (66.18%), Postives = 60/68 (88.24%), Query Frame = 0 

Query: 146 FELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKGLSKEEGEQLIEKMKA 205
           F++KLE +EAA+KIK+IKE+R+FTDLGLKEAK LVEK P ++K GL+KEE E+++EK+KA
Sbjct: 100 FDVKLEKFEAASKIKVIKEIRAFTDLGLKEAKALVEKAPVIVKNGLTKEEAEKIMEKLKA 159

Query: 206 LGAKVILE 214
           +GA V LE
Sbjct: 160 VGAIVALE 167

[Close]
BLAST of Carg07640 vs. TAIR10
Match: AT2G03130.1 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein)

HSP 1 Score: 87.4 bits (215), Expect = 1.1e-17
Identity = 46/69 (66.67%), Postives = 57/69 (82.61%), Query Frame = 0 

Query: 145 VFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKGLSKEEGEQLIEKMK 204
           VFE+KLES+EA AKIKIIKEVR    +GLKEA  LV K P+VLK GLSKEEGE+++EK+ 
Sbjct: 23  VFEVKLESFEARAKIKIIKEVRRIIGVGLKEAMKLVVKAPTVLKTGLSKEEGEEVVEKLN 82

Query: 205 ALGAKVILE 214
           ALGA+ +L+
Sbjct: 83  ALGAEAVLQ 91

[Close]
BLAST of Carg07640 vs. TAIR10
Match: AT3G06040.1 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein)

HSP 1 Score: 87.4 bits (215), Expect = 1.1e-17
Identity = 50/151 (33.11%), Postives = 82/151 (54.30%), Query Frame = 0 

Query: 63  PANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGXXXXXXXX 122
           P+ +DP   R  P+ ++  L + I+ L+  E  ++   L + L +    ++         
Sbjct: 44  PSVYDPYGPRPQPSSKIMELAERIAALSPEERKQIGPALNEHLRLPKQQMIS-------- 103

Query: 123 XXXXXXXXXXXXXXXXXXXXXXVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLVEK 182
                                  F++KLE + A+ KIK+IKEVR+FT LGLKEAK+LVEK
Sbjct: 104 SDGIGAKQDTGAGNVEEKKEKTAFDVKLEKFNASDKIKVIKEVRTFTSLGLKEAKELVEK 163

Query: 183 TPSVLKKGLSKEEGEQLIEKMKALGAKVILE 214
            P++LK+G++KEE  ++I K+KA+G   ++E
Sbjct: 164 VPAILKQGVTKEEANEIIAKIKAVGGIAVME 186

[Close]
BLAST of Carg07640 vs. Swiss-Prot
Match: sp|P41189|RL7_LIBAF (50S ribosomal protein L7/L12 OS=Liberibacter africanus OX=34020 GN=rplL PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 5.6e-14
Identity = 50/131 (38.17%), Postives = 73/131 (55.73%), Query Frame = 0 

Query: 82  LVDEISGLTLVEVAELSSILRKKLGMTDMPVVGXXXXXXXXXXXXXXXXXXXXXXXXXXX 141
           +V+++S LTL++ AELS  L ++ G++    V                            
Sbjct: 7   IVEKLSSLTLLQAAELSKRLEEEWGVSAAAPVAVVASAAGESAAAVAEKTE--------- 66

Query: 142 XXXVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKGLSKEEGEQLIE 201
               FE+ LE ++A  KI +IKEVR+ T+LGLKEAKD VE  P  LK G+SK+E E+L +
Sbjct: 67  ----FEVFLEGFDAKKKISVIKEVRAITELGLKEAKDFVESAPKSLKTGVSKDEAEELKK 124

Query: 202 KMKALGAKVIL 213
           K++A GA +IL
Sbjct: 127 KLEAAGATIIL 124

[Close]
BLAST of Carg07640 vs. Swiss-Prot
Match: sp|Q9L5W4|RL7_LIBAC (50S ribosomal protein L7/L12 OS=Liberibacter africanus subsp. capensis OX=119494 GN=rplL PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.1e-12
Identity = 51/131 (38.93%), Postives = 75/131 (57.25%), Query Frame = 0 

Query: 82  LVDEISGLTLVEVAELSSILRKKLGMTDMPVVGXXXXXXXXXXXXXXXXXXXXXXXXXXX 141
           +V+++S LTL++ AELS  L ++ G++    V       XX                   
Sbjct: 7   IVEKLSSLTLIQAAELSKRLEEEWGVSASAPVAAVAPAVXXDVAVAEKTE---------- 66

Query: 142 XXXVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKGLSKEEGEQLIE 201
               FE+ LES++A +KI +IKEVRS TDLGLKEAK+LVE     L+ G+SK+E  +L +
Sbjct: 67  ----FEVFLESFDAKSKISVIKEVRSITDLGLKEAKELVEALLKSLRTGVSKDEANELKK 123

Query: 202 KMKALGAKVIL 213
           K++A GA + L
Sbjct: 127 KLEAAGATISL 123

[Close]
BLAST of Carg07640 vs. Swiss-Prot
Match: sp|A9ISF8|RL7_BART1 (50S ribosomal protein L7/L12 OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) OX=382640 GN=rplL PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.2e-11
Identity = 60/133 (45.11%), Postives = 82/133 (61.65%), Query Frame = 0 

Query: 81  RLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGXXXXXXXXXXXXXXXXXXXXXXXXXX 140
           ++V+++S LTL+E AELS +L +K G++    V  XXXXXXXXXX               
Sbjct: 6   KIVEDLSNLTLLEAAELSKLLEEKWGVSAAAPVAVXXXXXXXXXXAEEKTE--------- 65

Query: 141 XXXXVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKGLSKEEGEQLI 200
                F++ L     A KI +IKEVR+ T LGLKEAKDLVE  P  +K+G SKEE E++ 
Sbjct: 66  -----FDVILVE-GGAQKINVIKEVRALTGLGLKEAKDLVEGAPKPIKEGASKEEAEKIK 123

Query: 201 EKMKALGAKVILE 214
            +++A GAKV L+
Sbjct: 126 SQLEAAGAKVELK 123

[Close]
BLAST of Carg07640 vs. Swiss-Prot
Match: sp|A1USC7|RL7_BARBK (50S ribosomal protein L7/L12 OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) OX=360095 GN=rplL PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 4.4e-11
Identity = 47/133 (35.34%), Postives = 73/133 (54.89%), Query Frame = 0 

Query: 81  RLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGXXXXXXXXXXXXXXXXXXXXXXXXXX 140
           ++V+++S LT++E AELS +L +K G++    V                           
Sbjct: 6   KIVEDLSNLTVLEAAELSKLLEEKWGVSAAAPVAVAAVGSAAAPAAEEKTE--------- 65

Query: 141 XXXXVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKGLSKEEGEQLI 200
                F++ L     A KI +IKEVR+ T LGLKEAKDLVE  P  +K+G+SK+E E++ 
Sbjct: 66  -----FDVVLVD-GGAQKINVIKEVRALTGLGLKEAKDLVEGAPKPIKEGVSKDEAEKIK 123

Query: 201 EKMKALGAKVILE 214
            +++A GAK+ L+
Sbjct: 126 AQLEAAGAKIELK 123

[Close]
BLAST of Carg07640 vs. Swiss-Prot
Match: sp|Q6FZL8|RL7_BARQU (50S ribosomal protein L7/L12 OS=Bartonella quintana (strain Toulouse) OX=283165 GN=rplL PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 4.4e-11
Identity = 48/130 (36.92%), Postives = 70/130 (53.85%), Query Frame = 0 

Query: 81  RLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGXXXXXXXXXXXXXXXXXXXXXXXXXX 140
           ++V+++S LTL+E AELS +L +K G++    V                           
Sbjct: 6   KIVEDLSNLTLLEAAELSKLLEEKWGVSAAAPVAVATVAGAAAPAAEEKTE--------- 65

Query: 141 XXXXVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKGLSKEEGEQLI 200
                F++ L     A KI +IKEVR+ T LGLKEAKDLVE  P  +K+G SK+E E++ 
Sbjct: 66  -----FDVILVDC-GAQKINVIKEVRALTGLGLKEAKDLVEGAPKPIKEGASKDEAEKIK 120

Query: 201 EKMKALGAKV 211
            +++A GAKV
Sbjct: 126 SQLEAAGAKV 120

[Close]
BLAST of Carg07640 vs. TrEMBL
Match: tr|A0A2P5EUS3|A0A2P5EUS3_9ROSA (Ribosomal protein OS=Trema orientalis OX=63057 GN=TorRG33x02_149550 PE=3 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 1.4e-62
Identity = 140/214 (65.42%), Postives = 158/214 (73.83%), Query Frame = 0 

Query: 1   MRLVLRISHLLPNVLA-NTFRSPALALNPLNVNGLHRNFSQPARIEEEEEVEIDQRRLPA 60
           M LVLR+ H LPN L    F    +A+NP  +NG+ +NFSQPAR E +EEVEIDQRRLP 
Sbjct: 1   MSLVLRLKHHLPNGLCRKPFLPSVVAINPGKLNGIWKNFSQPARNEADEEVEIDQRRLPT 60

Query: 61  DYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGXXXXX 120
           DYDPA FDPT+HRSPPTDRVFRLVDEISGLTL EVAEL +IL ++ GMT+ P VG     
Sbjct: 61  DYDPAKFDPTEHRSPPTDRVFRLVDEISGLTLAEVAELGTILMRRRGMTESPSVG--VMK 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDL 180
                                    VFE+KLESYEAA+KIK+IKEVRSFTDLGLKEAKDL
Sbjct: 121 PGAGGIPMAIKSPTAAKEEKKPEKTVFEIKLESYEAASKIKLIKEVRSFTDLGLKEAKDL 180

Query: 181 VEKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 214
           VEKTPSVLKKGLSKEEGEQ+IEK+ ALGAKV+LE
Sbjct: 181 VEKTPSVLKKGLSKEEGEQIIEKLTALGAKVVLE 212

[Close]
BLAST of Carg07640 vs. TrEMBL
Match: tr|A0A2P4HL83|A0A2P4HL83_QUESU (50s ribosomal protein l7/l12 OS=Quercus suber OX=58331 GN=CFP56_02041 PE=3 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 4.1e-62
Identity = 135/213 (63.38%), Postives = 157/213 (73.71%), Query Frame = 0 

Query: 1   MRLVLRISHLLPNVLANTFRSPALALNPLNVNGLHRNFSQPARIEEEEEVEIDQRRLPAD 60
           M  +LR  H LPN L+   R+P +ALN +N +G  R+F QPAR+EEEEE EIDQRRLP D
Sbjct: 1   MSFILRFRHHLPNGLS---RNPVVALNAINFSGFTRSFGQPARVEEEEEXEIDQRRLPTD 60

Query: 61  YDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGXXXXXX 120
           YDPA FDPT+HRSPPT+RVFRLVDE+SGLTL E AEL +I+ +K+GM + P VG      
Sbjct: 61  YDPATFDPTEHRSPPTERVFRLVDEVSGLTLAEAAELGAIMMRKMGMKEPPTVG-VLKPG 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLV 180
                                   VFE+KLESYEA+AKIKIIKEVR FTDLGLKEAKDLV
Sbjct: 121 AAGLAGMAVKSSAAAKEEKKPEKTVFEIKLESYEASAKIKIIKEVRGFTDLGLKEAKDLV 180

Query: 181 EKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 214
           EKTPSVLK+GLSKEEGEQ+IEK+KALGAKV+LE
Sbjct: 181 EKTPSVLKRGLSKEEGEQIIEKLKALGAKVVLE 209

[Close]
BLAST of Carg07640 vs. TrEMBL
Match: tr|W9S8M4|W9S8M4_9ROSA (50S ribosomal protein OS=Morus notabilis OX=981085 GN=L484_005958 PE=3 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 1.2e-61
Identity = 139/216 (64.35%), Postives = 158/216 (73.15%), Query Frame = 0 

Query: 1   MRLVLRISHLLPN-VLANTFRSPALALNPLNVNGLHRNFSQPA-RIEEEEEVEIDQRRLP 60
           M LVLR+ H LPN      FRS  +ALNP N+NGL +N+ QPA + EE+EEVE DQRRLP
Sbjct: 1   MSLVLRLKHHLPNGFYRKPFRSTVVALNPGNINGLWKNYGQPAIKEEEDEEVEFDQRRLP 60

Query: 61  ADYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVG-XXX 120
            DYDPA FDP++HRSPPT+RVFRLVDEISGLTL EVAEL +I  +K GMT+ P VG    
Sbjct: 61  TDYDPATFDPSEHRSPPTERVFRLVDEISGLTLAEVAELGAIFMRKRGMTEPPSVGVMKP 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAK 180
                                      VFELKLESYEAA+KIK+IKEVRSFTDLGLKEAK
Sbjct: 121 GAAGLAGMALATKAATAAKEEKKPEKTVFELKLESYEAASKIKLIKEVRSFTDLGLKEAK 180

Query: 181 DLVEKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 214
           DLVEKTPS+LKKGLSKEEGEQL+EK+K LGAKV+LE
Sbjct: 181 DLVEKTPSILKKGLSKEEGEQLVEKLKELGAKVVLE 216

[Close]
BLAST of Carg07640 vs. TrEMBL
Match: tr|A0A2C9W5G7|A0A2C9W5G7_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_03G074200 PE=3 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 1.6e-61
Identity = 139/217 (64.06%), Postives = 165/217 (76.04%), Query Frame = 0 

Query: 1   MRLVLRISHLLPNVLA--NTFRSPALALNPLNVNG-LHRNFSQPARIE-EEEEVEIDQRR 60
           M L+ R+ H +PN  +   +FR P + LN + +NG L R F+QPAR++ EEEEVEIDQRR
Sbjct: 1   MNLIFRLRHNIPNGFSAKPSFR-PLVPLNFMKLNGALSRGFAQPARVDGEEEEVEIDQRR 60

Query: 61  LPADYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGXX 120
           LPADYDPA FDPT+HRSPPT+RVF+LVDEI+GLTLVEVAELSSI+ +K GMT++PVVG  
Sbjct: 61  LPADYDPATFDPTEHRSPPTERVFKLVDEIAGLTLVEVAELSSIILRKKGMTELPVVGVM 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXVFELKLESYEAAAKIKIIKEVRSFTDLGLKEA 180
                                       VFELKLESYEAA+KIKIIKEVRSFTDLGLKEA
Sbjct: 121 KAGAAGLAGMTMKAPTAAAKEEKKPEKTVFELKLESYEAASKIKIIKEVRSFTDLGLKEA 180

Query: 181 KDLVEKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 214
           KDLVEKTPS+LK G+SKEEGE++IEKMKALGAKV++E
Sbjct: 181 KDLVEKTPSILKAGVSKEEGEKIIEKMKALGAKVVME 216

[Close]
BLAST of Carg07640 vs. TrEMBL
Match: tr|A0A2N9HFH4|A0A2N9HFH4_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS38302 PE=3 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 7.7e-61
Identity = 133/213 (62.44%), Postives = 155/213 (72.77%), Query Frame = 0 

Query: 1   MRLVLRISHLLPNVLANTFRSPALALNPLNVNGLHRNFSQPARIEEEEEVEIDQRRLPAD 60
           M  +LR  H LPN L+   R P +ALN +N NG  R+F QPA+ EEEEEVEIDQRRLP D
Sbjct: 1   MSFILRFRHHLPNGLS---RKPVVALNAINFNGFSRSFCQPAKEEEEEEVEIDQRRLPTD 60

Query: 61  YDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGXXXXXX 120
           YDPA FDPT+HRSPP++RVFRL+DE++GLTL E AEL  I+ +K+GM + P VG      
Sbjct: 61  YDPATFDPTEHRSPPSERVFRLIDEVAGLTLAEAAELGGIMMRKMGMKEPPTVG-VLKPG 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLV 180
                                   VFELKLESYEAA+KIKIIKEVR FTDLGLKEAKDLV
Sbjct: 121 AAGLAGMGVKAPIASKEEMKPEKTVFELKLESYEAASKIKIIKEVRGFTDLGLKEAKDLV 180

Query: 181 EKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 214
           EK+PSVLKKG+SKEEGEQ+IEK+KALGAKV+LE
Sbjct: 181 EKSPSVLKKGVSKEEGEQIIEKLKALGAKVVLE 209

The following BLAST results are available for this feature:
BLAST of Carg07640 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023519323.14.7e-8698.59uncharacterized protein LOC111782753 [Cucurbita pepo subsp. pepo][more]
XP_022924112.16.1e-8698.59uncharacterized protein LOC111431646 [Cucurbita moschata][more]
XP_023001011.14.4e-8496.71uncharacterized protein LOC111495277 [Cucurbita maxima] >XP_023001013.1 uncharac... [more]
XP_022137691.11.1e-7979.91uncharacterized protein LOC111009067 [Momordica charantia][more]
XP_022954769.13.7e-7577.10uncharacterized protein LOC111456924 [Cucurbita moschata] >XP_022954770.1 unchar... [more]
BLAST of Carg07640 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G70190.13.1e-5566.49Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/a... [more]
AT4G36420.13.0e-2644.14Ribosomal protein L12 family protein[more]
AT4G37660.11.0e-1866.18Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr... [more]
AT2G03130.11.1e-1766.67Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr... [more]
AT3G06040.11.1e-1733.11Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr... [more]
BLAST of Carg07640 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P41189|RL7_LIBAF5.6e-1438.1750S ribosomal protein L7/L12 OS=Liberibacter africanus OX=34020 GN=rplL PE=3 SV=... [more]
sp|Q9L5W4|RL7_LIBAC1.1e-1238.9350S ribosomal protein L7/L12 OS=Liberibacter africanus subsp. capensis OX=119494... [more]
sp|A9ISF8|RL7_BART11.2e-1145.1150S ribosomal protein L7/L12 OS=Bartonella tribocorum (strain CIP 105476 / IBS 5... [more]
sp|A1USC7|RL7_BARBK4.4e-1135.3450S ribosomal protein L7/L12 OS=Bartonella bacilliformis (strain ATCC 35685 / KC... [more]
sp|Q6FZL8|RL7_BARQU4.4e-1136.9250S ribosomal protein L7/L12 OS=Bartonella quintana (strain Toulouse) OX=283165 ... [more]
BLAST of Carg07640 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A2P5EUS3|A0A2P5EUS3_9ROSA1.4e-6265.42Ribosomal protein OS=Trema orientalis OX=63057 GN=TorRG33x02_149550 PE=3 SV=1[more]
tr|A0A2P4HL83|A0A2P4HL83_QUESU4.1e-6263.3850s ribosomal protein l7/l12 OS=Quercus suber OX=58331 GN=CFP56_02041 PE=3 SV=1[more]
tr|W9S8M4|W9S8M4_9ROSA1.2e-6164.3550S ribosomal protein OS=Morus notabilis OX=981085 GN=L484_005958 PE=3 SV=1[more]
tr|A0A2C9W5G7|A0A2C9W5G7_MANES1.6e-6164.06Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_03G074200 PE=3 SV=... [more]
tr|A0A2N9HFH4|A0A2N9HFH4_FAGSY7.7e-6162.44Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS38302 PE=3 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR036235Ribosomal_L7/L12_oligo_N_sf
IPR000206Ribosomal_L7/12
IPR015608Put_Ribosomal_L7/L12_plants
IPR014719Ribosomal_L7/12_C/ClpS-like
IPR008932Ribosomal_L7/L12_oligo
IPR013823Ribosomal_L7/L12_C
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg07640-RACarg07640-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013823Ribosomal protein L7/L12, C-terminalPFAMPF00542Ribosomal_L12coord: 146..212
e-value: 1.5E-20
score: 73.2
IPR013823Ribosomal protein L7/L12, C-terminalPRODOMPD001326coord: 150..212
e-value: 1.0E-21
score: 254.0
IPR008932Ribosomal protein L7/L12, oligomerisationPFAMPF16320Ribosomal_L12_Ncoord: 82..122
e-value: 7.7E-10
score: 38.3
IPR014719Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-likeGENE3DG3DSA:3.30.1390.10coord: 139..212
e-value: 7.6E-24
score: 85.5
IPR014719Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-likeSUPERFAMILYSSF54736ClpS-likecoord: 142..212
NoneNo IPR availablePANTHERPTHR24089FAMILY NOT NAMEDcoord: 57..213
IPR015608Putative ribosomal protein L7/L12, plantsPANTHERPTHR24089:SF38750S RIBOSOMAL PROTEIN L7/L12-RELATEDcoord: 57..213
IPR000206Ribosomal protein L7/L12HAMAPMF_00368Ribosomal_L7_L12coord: 76..213
score: 17.655
IPR000206Ribosomal protein L7/L12CDDcd00387Ribosomal_L7_L12coord: 78..212
e-value: 3.83864E-43
score: 142.294
IPR036235Ribosomal protein L7/L12, oligomerisation domain superfamilySUPERFAMILYSSF48300Ribosomal protein L7/12, oligomerisation (N-terminal) domaincoord: 81..142