CmoCh13G008740 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh13G008740
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description50S ribosomal protein L7/L12, putative
LocationCmo_Chr13 : 7951170 .. 7951811 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGCTTAGTTTTAAGAATAAGTCATCTCCTACCCAATGTGTTGGCAAACACCTTTCGCTCTCCTGCACTTGCCCTCAATCCTCTCAATGTAAATGGATTACATAGAGATTTTTCTCAACCTGCTTGGATAGAGGAGGAGGAGGAGGTGGAAATTGACCAGAGAAGGCTTCCAGCTGACTACGATCCAGCTAATTTTGATCCAACACAGCATCGTAGTCCTCCAACCGATCGCGTTTTTAGGCTTGTAGATGAAATATCTGGACTCACATTAGTTGAAGTTGCTGAATTATCTTCCATTTTGAGGAAAAGATTAGGAATGACAGACATGCCAGTTGTTGGAGTTATGAAGGCAGGAGCTGCCGGATTGGCTGGAATGGCAACAAAGGCCTCATCAGCCACTGCCAAGGAGGAGAAGAAGACAGAAAAGACTGTTTTTGAGTTGAAACTAGAGTCTTATGAAGCGGCTGCAAAGATTAAAATTATCAAGGAGGTAAGAAGTTTCACTGATTTAGGCCTTAAAGAAGCGAAGGATCTAGTGGAGAAAACCCCGTCGGTGTTGAAGAAGGGACTATCAAAGGAAGAGGGTGAACAACTAATTGAAAAAATGAAGGCTCTTGGTGCAAAGGTGATCTTGGAATGA

mRNA sequence

ATGCGCTTAGTTTTAAGAATAAGTCATCTCCTACCCAATGTGTTGGCAAACACCTTTCGCTCTCCTGCACTTGCCCTCAATCCTCTCAATGTAAATGGATTACATAGAGATTTTTCTCAACCTGCTTGGATAGAGGAGGAGGAGGAGGTGGAAATTGACCAGAGAAGGCTTCCAGCTGACTACGATCCAGCTAATTTTGATCCAACACAGCATCGTAGTCCTCCAACCGATCGCGTTTTTAGGCTTGTAGATGAAATATCTGGACTCACATTAGTTGAAGTTGCTGAATTATCTTCCATTTTGAGGAAAAGATTAGGAATGACAGACATGCCAGTTGTTGGAGTTATGAAGGCAGGAGCTGCCGGATTGGCTGGAATGGCAACAAAGGCCTCATCAGCCACTGCCAAGGAGGAGAAGAAGACAGAAAAGACTGTTTTTGAGTTGAAACTAGAGTCTTATGAAGCGGCTGCAAAGATTAAAATTATCAAGGAGGTAAGAAGTTTCACTGATTTAGGCCTTAAAGAAGCGAAGGATCTAGTGGAGAAAACCCCGTCGGTGTTGAAGAAGGGACTATCAAAGGAAGAGGGTGAACAACTAATTGAAAAAATGAAGGCTCTTGGTGCAAAGGTGATCTTGGAATGA

Coding sequence (CDS)

ATGCGCTTAGTTTTAAGAATAAGTCATCTCCTACCCAATGTGTTGGCAAACACCTTTCGCTCTCCTGCACTTGCCCTCAATCCTCTCAATGTAAATGGATTACATAGAGATTTTTCTCAACCTGCTTGGATAGAGGAGGAGGAGGAGGTGGAAATTGACCAGAGAAGGCTTCCAGCTGACTACGATCCAGCTAATTTTGATCCAACACAGCATCGTAGTCCTCCAACCGATCGCGTTTTTAGGCTTGTAGATGAAATATCTGGACTCACATTAGTTGAAGTTGCTGAATTATCTTCCATTTTGAGGAAAAGATTAGGAATGACAGACATGCCAGTTGTTGGAGTTATGAAGGCAGGAGCTGCCGGATTGGCTGGAATGGCAACAAAGGCCTCATCAGCCACTGCCAAGGAGGAGAAGAAGACAGAAAAGACTGTTTTTGAGTTGAAACTAGAGTCTTATGAAGCGGCTGCAAAGATTAAAATTATCAAGGAGGTAAGAAGTTTCACTGATTTAGGCCTTAAAGAAGCGAAGGATCTAGTGGAGAAAACCCCGTCGGTGTTGAAGAAGGGACTATCAAAGGAAGAGGGTGAACAACTAATTGAAAAAATGAAGGCTCTTGGTGCAAAGGTGATCTTGGAATGA
Homology
[Close]
BLAST of CmoCh13G008740 vs. Swiss-Prot
Match: RL7_LIBAF (50S ribosomal protein L7/L12 OS=Liberibacter africanus GN=rplL PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.4e-17
Identity = 59/131 (45.04%), Postives = 83/131 (63.36%), Query Frame = 1 

Query: 82  LVDEISGLTLVEVAELSSILRKRLGMTDMPVVGVMKAGAAGLAGMATKASSATAKEEKKT 141
           +V+++S LTL++ AELS  L +  G++    V V+ A AAG +  A              
Sbjct: 7   IVEKLSSLTLLQAAELSKRLEEEWGVSAAAPVAVV-ASAAGESAAAV------------A 66

Query: 142 EKTVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKGLSKEEGEQLIE 201
           EKT FE+ LE ++A  KI +IKEVR+ T+LGLKEAKD VE  P  LK G+SK+E E+L +
Sbjct: 67  EKTEFEVFLEGFDAKKKISVIKEVRAITELGLKEAKDFVESAPKSLKTGVSKDEAEELKK 124

Query: 202 KMKALGAKVIL 213
           K++A GA +IL
Sbjct: 127 KLEAAGATIIL 124

[Close]
BLAST of CmoCh13G008740 vs. Swiss-Prot
Match: MNP1_SCHPO (54S ribosomal protein L12, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mrpl12 PE=3 SV=2)

HSP 1 Score: 88.6 bits (218), Expect = 9.1e-17
Identity = 57/136 (41.91%), Postives = 85/136 (62.50%), Query Frame = 1 

Query: 78  RVFRLVDEISGLTLVEVAELSSILRKRLGMTDMPVVGVMKAGAAGLAGMATKASSATAKE 137
           ++  +VD+IS L+L+E +EL   L+++L + +   +  M A A  +A  A   S   A E
Sbjct: 43  QIGEMVDKISSLSLLETSELVKQLKEKLNIAE---IAPMAAVAPAVASAAP--SEEKAPE 102

Query: 138 EKKTEKTVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKGLSKEEGE 197
           EKK EKT + LKLES++A +K K+IKEV+S   L L +AK  VE  P VLK+ + KE+ E
Sbjct: 103 EKKEEKTTWNLKLESFDAGSKAKVIKEVKSLLGLSLVDAKKFVESAPKVLKENILKEDAE 162

Query: 198 QLIEKMKALGAKVILE 214
            +  K++ L  KV+LE
Sbjct: 163 AIKSKLEKLSCKVVLE 173

[Close]
BLAST of CmoCh13G008740 vs. Swiss-Prot
Match: RL7_OCHA4 (50S ribosomal protein L7/L12 OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=rplL PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.3e-15
Identity = 57/133 (42.86%), Postives = 81/133 (60.90%), Query Frame = 1 

Query: 81  RLVDEISGLTLVEVAELSSILRKRLGMTDMPVVGVMKAGAAGLAGMATKASSATAKEEKK 140
           ++VD++S LT++E AELS +L ++ G++    V V  AG A  A  A             
Sbjct: 6   KIVDDLSALTVLEAAELSKLLEEKWGVSAAAPVAVAAAGGAAPAAAAE------------ 65

Query: 141 TEKTVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKGLSKEEGEQLI 200
            EKT F++ L     A KI +IKEVR+ T LGLKEAKDLVE  P  +K+G SK+E E++ 
Sbjct: 66  -EKTEFDVVLAD-GGANKINVIKEVRAITGLGLKEAKDLVEGAPKAVKEGASKDEAEKIK 124

Query: 201 EKMKALGAKVILE 214
            +++A GAKV L+
Sbjct: 126 AQLEAAGAKVELK 124

[Close]
BLAST of CmoCh13G008740 vs. Swiss-Prot
Match: RL7_PROM4 (50S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain MIT 9211) GN=rplL PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.7e-15
Identity = 55/132 (41.67%), Postives = 83/132 (62.88%), Query Frame = 1 

Query: 82  LVDEISGLTLVEVAELSSILRKRLGMTDMPVVGVMKAGAAGLAGMATKASSATAKEEKKT 141
           ++D +  L+L+E +EL   + +  G++     GV+ A A G  G A+ A  A        
Sbjct: 8   ILDSLKSLSLLEASELVKQIEEAFGVSAAASAGVVMA-APGAGGGASAAGEAAE------ 67

Query: 142 EKTVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKGLSKEEGEQLIE 201
           EKT F++ LES++AAAKIK++KEVR+ T LGL EAK +VE  P  +K+G SKE+ E L +
Sbjct: 68  EKTEFDVILESFDAAAKIKVLKEVRNATGLGLGEAKAMVEAAPKTIKEGASKEDAEALKK 127

Query: 202 KMKALGAKVILE 214
            ++A+G KV L+
Sbjct: 128 AIEAVGGKVTLK 132

[Close]
BLAST of CmoCh13G008740 vs. Swiss-Prot
Match: RL7_BRUO2 (50S ribosomal protein L7/L12 OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=rplL PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.2e-15
Identity = 56/133 (42.11%), Postives = 82/133 (61.65%), Query Frame = 1 

Query: 81  RLVDEISGLTLVEVAELSSILRKRLGMTDMPVVGVMKAGAAGLAGMATKASSATAKEEKK 140
           ++V+++S LT++E AELS +L ++ G++    V V  AG A  A  A             
Sbjct: 6   KIVEDLSALTVLEAAELSKLLEEKWGVSAAAPVAVAAAGGAAPAAAAE------------ 65

Query: 141 TEKTVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKGLSKEEGEQLI 200
            EKT F++ L     A KI +IKEVR+ T LGLKEAKDLVE  P  +K+G+SK+E E++ 
Sbjct: 66  -EKTEFDVVLAD-GGANKINVIKEVRALTGLGLKEAKDLVEGAPKAVKEGVSKDEAEKIK 124

Query: 201 EKMKALGAKVILE 214
            +++A GAKV L+
Sbjct: 126 AQLEAAGAKVELK 124

[Close]
BLAST of CmoCh13G008740 vs. TrEMBL
Match: A0A0A0LU08_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G057000 PE=3 SV=1)

HSP 1 Score: 335.1 bits (858), Expect = 6.2e-89
Identity = 181/214 (84.58%), Postives = 195/214 (91.12%), Query Frame = 1 

Query: 1   MRLVLRISHLLPNVLANTFRSPALALNPLNVNGLHRDFSQPAWIEE-EEEVEIDQRRLPA 60
           MRLV RISHLLPNV ANT RS  +ALNPLN NGLHR+++QP+ IEE EEEVEIDQRRLPA
Sbjct: 1   MRLVSRISHLLPNVFANTIRSSTVALNPLNRNGLHRNYAQPSRIEEEEEEVEIDQRRLPA 60

Query: 61  DYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKRLGMTDMPVVGVMKAG 120
           DYDPANFDPT+HRSPPTDRVFRLVDEISGLTLVEVAE+SSIL K+LGMT+MPV G MK G
Sbjct: 61  DYDPANFDPTEHRSPPTDRVFRLVDEISGLTLVEVAEMSSILMKKLGMTEMPVAGYMKPG 120

Query: 121 AAGLAGMATKASSATAKEEKKTEKTVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDL 180
           A GLAGM  K SSATAKEEKK EKTV+ELKLESYEA+AKIKIIKEVRS TDLGLKEAKDL
Sbjct: 121 AVGLAGMVKKGSSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSLTDLGLKEAKDL 180

Query: 181 VEKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 214
           V+K PSVLKKGLSKEEGEQ++EKMKALGAKVILE
Sbjct: 181 VDKAPSVLKKGLSKEEGEQIVEKMKALGAKVILE 214

[Close]
BLAST of CmoCh13G008740 vs. TrEMBL
Match: W9S8M4_9ROSA (50S ribosomal protein OS=Morus notabilis GN=L484_005958 PE=3 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 6.6e-75
Identity = 161/216 (74.54%), Postives = 181/216 (83.80%), Query Frame = 1 

Query: 1   MRLVLRISHLLPN-VLANTFRSPALALNPLNVNGLHRDFSQPAWIEEE-EEVEIDQRRLP 60
           M LVLR+ H LPN      FRS  +ALNP N+NGL +++ QPA  EEE EEVE DQRRLP
Sbjct: 1   MSLVLRLKHHLPNGFYRKPFRSTVVALNPGNINGLWKNYGQPAIKEEEDEEVEFDQRRLP 60

Query: 61  ADYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKRLGMTDMPVVGVMKA 120
            DYDPA FDP++HRSPPT+RVFRLVDEISGLTL EVAEL +I  ++ GMT+ P VGVMK 
Sbjct: 61  TDYDPATFDPSEHRSPPTERVFRLVDEISGLTLAEVAELGAIFMRKRGMTEPPSVGVMKP 120

Query: 121 GAAGLAGMATKASSAT-AKEEKKTEKTVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAK 180
           GAAGLAGMA    +AT AKEEKK EKTVFELKLESYEAA+KIK+IKEVRSFTDLGLKEAK
Sbjct: 121 GAAGLAGMALATKAATAAKEEKKPEKTVFELKLESYEAASKIKLIKEVRSFTDLGLKEAK 180

Query: 181 DLVEKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 214
           DLVEKTPS+LKKGLSKEEGEQL+EK+K LGAKV+LE
Sbjct: 181 DLVEKTPSILKKGLSKEEGEQLVEKLKELGAKVVLE 216

[Close]
BLAST of CmoCh13G008740 vs. TrEMBL
Match: A0A061DXQ8_THECC (Ribosomal protein L7/L12 isoform 1 OS=Theobroma cacao GN=TCM_006020 PE=3 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 8.1e-73
Identity = 165/221 (74.66%), Postives = 183/221 (82.81%), Query Frame = 1 

Query: 1   MRLVLRISHLLPN--VLANTFRSPALALNPLNVNGLHRDFSQPAWIE---EEEEVEIDQR 60
           M LVLR+ H L +       F S  + LN  + N L R+FSQPA  E   EEEEVEIDQR
Sbjct: 1   MSLVLRLRHHLHSGFFCRKPFESQIVTLNAFSSNRLSRNFSQPAKQEQEDEEEEVEIDQR 60

Query: 61  RLPADYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKRLGMTDMPVVGV 120
           RLPADYDP+NFDPT+HRSPPT+RV+RLVDEISGLTL E+AEL SI+ K+ GMT+ P VGV
Sbjct: 61  RLPADYDPSNFDPTEHRSPPTERVWRLVDEISGLTLSEIAELGSIIMKKRGMTEPPTVGV 120

Query: 121 MKAGAA-GLAGMATKASS--ATAKEEKKTEKTVFELKLESYEAAAKIKIIKEVRSFTDLG 180
           MKAGAA GLAGMA KA+   A AKEEKK EKTVFELKLESYEAA+KIKIIKEVRSFTDLG
Sbjct: 121 MKAGAAAGLAGMAKKAAGGGAAAKEEKKAEKTVFELKLESYEAASKIKIIKEVRSFTDLG 180

Query: 181 LKEAKDLVEKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 214
           LKEAKDLVEKTP+VLKKG+SKEEGEQLIEKMKALGAKV+LE
Sbjct: 181 LKEAKDLVEKTPAVLKKGVSKEEGEQLIEKMKALGAKVVLE 221

[Close]
BLAST of CmoCh13G008740 vs. TrEMBL
Match: A0A061DWT8_THECC (Ribosomal protein L7/L12 isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_006020 PE=3 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 6.9e-72
Identity = 158/201 (78.61%), Postives = 174/201 (86.57%), Query Frame = 1 

Query: 19  FRSPALALNPLNVNGLHRDFSQPAWIE---EEEEVEIDQRRLPADYDPANFDPTQHRSPP 78
           F S  + LN  + N L R+FSQPA  E   EEEEVEIDQRRLPADYDP+NFDPT+HRSPP
Sbjct: 34  FESQIVTLNAFSSNRLSRNFSQPAKQEQEDEEEEVEIDQRRLPADYDPSNFDPTEHRSPP 93

Query: 79  TDRVFRLVDEISGLTLVEVAELSSILRKRLGMTDMPVVGVMKAGAA-GLAGMATKASS-- 138
           T+RV+RLVDEISGLTL E+AEL SI+ K+ GMT+ P VGVMKAGAA GLAGMA KA+   
Sbjct: 94  TERVWRLVDEISGLTLSEIAELGSIIMKKRGMTEPPTVGVMKAGAAAGLAGMAKKAAGGG 153

Query: 139 ATAKEEKKTEKTVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKGLS 198
           A AKEEKK EKTVFELKLESYEAA+KIKIIKEVRSFTDLGLKEAKDLVEKTP+VLKKG+S
Sbjct: 154 AAAKEEKKAEKTVFELKLESYEAASKIKIIKEVRSFTDLGLKEAKDLVEKTPAVLKKGVS 213

Query: 199 KEEGEQLIEKMKALGAKVILE 214
           KEEGEQLIEKMKALGAKV+LE
Sbjct: 214 KEEGEQLIEKMKALGAKVVLE 234

[Close]
BLAST of CmoCh13G008740 vs. TrEMBL
Match: M5WHF2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011350mg PE=3 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 2.6e-71
Identity = 161/216 (74.54%), Postives = 179/216 (82.87%), Query Frame = 1 

Query: 1   MRLVLRISHLLPNVLANT-FRSPALALNPLNVNGLHRDFSQPAWIEEEEE--VEIDQRRL 60
           M LVLR+   LPN        SP  ALNP ++NG  ++FSQPA  EEEEE  VEIDQRRL
Sbjct: 1   MSLVLRLRQHLPNGFCRRPLISPLAALNPGSLNGFCQNFSQPARKEEEEEEEVEIDQRRL 60

Query: 61  PADYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKRLGMTDMPVVGVMK 120
           PADYDPA FDPT+HRSPPTDRVFRLVDEIS LTL EVAEL SI+ ++ GM + P+VGVMK
Sbjct: 61  PADYDPATFDPTEHRSPPTDRVFRLVDEISSLTLAEVAELGSIMMRKKGMKEPPIVGVMK 120

Query: 121 AGAAGLAGMATKASSATAKEEKKTEKTVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAK 180
            GAAGL G+A K  +A AKEEKK EKTVFELKLES+EAA+KIK+IKEVRSFTDLGLKEAK
Sbjct: 121 PGAAGL-GLAMKGPAA-AKEEKKPEKTVFELKLESFEAASKIKLIKEVRSFTDLGLKEAK 180

Query: 181 DLVEKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 214
           DLVEK PSVLKKGLSKEEGEQLIEK+KALGAKV+LE
Sbjct: 181 DLVEKAPSVLKKGLSKEEGEQLIEKLKALGAKVVLE 214

[Close]
BLAST of CmoCh13G008740 vs. TAIR10
Match: AT1G70190.1 (AT1G70190.1 Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like)

HSP 1 Score: 238.4 bits (607), Expect = 4.0e-63
Identity = 128/191 (67.02%), Postives = 156/191 (81.68%), Query Frame = 1 

Query: 26  LNPLNVNGLHRDFSQPAWIEEEEEVEIDQRRLPADYDPANFDPTQHRSPPTDRVFRLVDE 85
           L+ L+  G +R ++QPA IE+EEE E DQR+LP DYDPA FDPT+HRSPPTDRVFRLVDE
Sbjct: 18  LSLLSRIGGYRSYTQPAKIEDEEEEEFDQRKLPTDYDPATFDPTEHRSPPTDRVFRLVDE 77

Query: 86  ISGLTLVEVAELSSILRKRLGMTDMPVVGVMKAGA---AGLAGMATKASSATAKEEKKTE 145
           IS LTL+E++EL SI+ K+ GMT++P V VMK GA    G+ G     S +   EE K E
Sbjct: 78  ISSLTLLEISELGSIIMKKKGMTELPTVAVMKPGAGGGVGVGGGGGMVSQSGVSEEAKVE 137

Query: 146 KTVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKGLSKEEGEQLIEK 205
           KTVFE+KLES+EA+AKIKIIKE+RSFTDLGLKEAK LVEKTP++LK GLSKEEGE+++EK
Sbjct: 138 KTVFEIKLESFEASAKIKIIKELRSFTDLGLKEAKALVEKTPAILKAGLSKEEGEKILEK 197

Query: 206 MKALGAKVILE 214
           +KALGAKV+LE
Sbjct: 198 LKALGAKVVLE 208

[Close]
BLAST of CmoCh13G008740 vs. TAIR10
Match: AT4G36420.1 (AT4G36420.1 Ribosomal protein L12 family protein)

HSP 1 Score: 134.4 bits (337), Expect = 8.1e-32
Identity = 73/145 (50.34%), Postives = 110/145 (75.86%), Query Frame = 1 

Query: 71  HRSPPT--DRVFRLVDEISGLTLVEVAELSSILRKRLGMTDMPVVGVMKAGAAGLAGMAT 130
           + SP T  + V ++V+E+S LTL+E  +L+ ILR++L ++++PV+  M  G +     A+
Sbjct: 35  YSSPATQSENVSKIVNELSNLTLLETMDLTEILRQKLNISELPVMAAMMPGMSLPGSGAS 94

Query: 131 KASSATAKEEKKTEKTVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLK 190
           K++    KE+KK  KT F++ L++Y+A +KIK+IKEVR+ T LGLKEAKDLVEK P++LK
Sbjct: 95  KSAGGEGKEKKKEAKTAFDVMLQAYDAVSKIKVIKEVRTITALGLKEAKDLVEKAPTLLK 154

Query: 191 KGLSKEEGEQLIEKMKALGAKVILE 214
           KG+SKEE E++IEK+KA+GAKV +E
Sbjct: 155 KGVSKEEAEKIIEKLKAVGAKVAME 179

[Close]
BLAST of CmoCh13G008740 vs. TAIR10
Match: AT4G37660.1 (AT4G37660.1 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein)

HSP 1 Score: 105.5 bits (262), Expect = 4.0e-23
Identity = 62/138 (44.93%), Postives = 92/138 (66.67%), Query Frame = 1 

Query: 76  TDRVFRLVDEISGLTLVEVAELSSILRKRLGMTDMPVVGVMKAGAAGLAGMATKASSATA 135
           T ++ R+ D++  L  +E+ + S +   ++G+            A  + G    AS++T 
Sbjct: 39  TKKLERIADDLLKLNRIELYDYSLLFSHKIGLNRY-------GSAVAVTGSVGDASAST- 98

Query: 136 KEEKKTEKTVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKGLSKEE 195
            E K  EKT F++KLE +EAA+KIK+IKE+R+FTDLGLKEAK LVEK P ++K GL+KEE
Sbjct: 99  -ETKTAEKTTFDVKLEKFEAASKIKVIKEIRAFTDLGLKEAKALVEKAPVIVKNGLTKEE 158

Query: 196 GEQLIEKMKALGAKVILE 214
            E+++EK+KA+GA V LE
Sbjct: 159 AEKIMEKLKAVGAIVALE 167

[Close]
BLAST of CmoCh13G008740 vs. TAIR10
Match: AT3G06040.1 (AT3G06040.1 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein)

HSP 1 Score: 102.4 bits (254), Expect = 3.4e-22
Identity = 57/151 (37.75%), Postives = 92/151 (60.93%), Query Frame = 1 

Query: 63  PANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKRLGMTDMPVVGVMKAGAAG 122
           P+ +DP   R  P+ ++  L + I+ L+  E  ++   L + L +    ++         
Sbjct: 44  PSVYDPYGPRPQPSSKIMELAERIAALSPEERKQIGPALNEHLRLPKQQMISS------- 103

Query: 123 LAGMATKASSATAKEEKKTEKTVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLVEK 182
             G+  K  +     E+K EKT F++KLE + A+ KIK+IKEVR+FT LGLKEAK+LVEK
Sbjct: 104 -DGIGAKQDTGAGNVEEKKEKTAFDVKLEKFNASDKIKVIKEVRTFTSLGLKEAKELVEK 163

Query: 183 TPSVLKKGLSKEEGEQLIEKMKALGAKVILE 214
            P++LK+G++KEE  ++I K+KA+G   ++E
Sbjct: 164 VPAILKQGVTKEEANEIIAKIKAVGGIAVME 186

[Close]
BLAST of CmoCh13G008740 vs. TAIR10
Match: AT2G03130.1 (AT2G03130.1 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein)

HSP 1 Score: 94.4 bits (233), Expect = 9.3e-20
Identity = 53/83 (63.86%), Postives = 64/83 (77.11%), Query Frame = 1 

Query: 131 SSATAKEEKKTEKTVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKG 190
           S   A E  K EKTVFE+KLES+EA AKIKIIKEVR    +GLKEA  LV K P+VLK G
Sbjct: 9   SGGGANEGAKAEKTVFEVKLESFEARAKIKIIKEVRRIIGVGLKEAMKLVVKAPTVLKTG 68

Query: 191 LSKEEGEQLIEKMKALGAKVILE 214
           LSKEEGE+++EK+ ALGA+ +L+
Sbjct: 69  LSKEEGEEVVEKLNALGAEAVLQ 91

[Close]
BLAST of CmoCh13G008740 vs. NCBI nr
Match: gi|449454776|ref|XP_004145130.1| (PREDICTED: 54S ribosomal protein L12, mitochondrial [Cucumis sativus])

HSP 1 Score: 335.1 bits (858), Expect = 8.9e-89
Identity = 181/214 (84.58%), Postives = 195/214 (91.12%), Query Frame = 1 

Query: 1   MRLVLRISHLLPNVLANTFRSPALALNPLNVNGLHRDFSQPAWIEE-EEEVEIDQRRLPA 60
           MRLV RISHLLPNV ANT RS  +ALNPLN NGLHR+++QP+ IEE EEEVEIDQRRLPA
Sbjct: 1   MRLVSRISHLLPNVFANTIRSSTVALNPLNRNGLHRNYAQPSRIEEEEEEVEIDQRRLPA 60

Query: 61  DYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKRLGMTDMPVVGVMKAG 120
           DYDPANFDPT+HRSPPTDRVFRLVDEISGLTLVEVAE+SSIL K+LGMT+MPV G MK G
Sbjct: 61  DYDPANFDPTEHRSPPTDRVFRLVDEISGLTLVEVAEMSSILMKKLGMTEMPVAGYMKPG 120

Query: 121 AAGLAGMATKASSATAKEEKKTEKTVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDL 180
           A GLAGM  K SSATAKEEKK EKTV+ELKLESYEA+AKIKIIKEVRS TDLGLKEAKDL
Sbjct: 121 AVGLAGMVKKGSSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSLTDLGLKEAKDL 180

Query: 181 VEKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 214
           V+K PSVLKKGLSKEEGEQ++EKMKALGAKVILE
Sbjct: 181 VDKAPSVLKKGLSKEEGEQIVEKMKALGAKVILE 214

[Close]
BLAST of CmoCh13G008740 vs. NCBI nr
Match: gi|659067613|ref|XP_008440389.1| (PREDICTED: 54S ribosomal protein L12, mitochondrial [Cucumis melo])

HSP 1 Score: 335.1 bits (858), Expect = 8.9e-89
Identity = 182/214 (85.05%), Postives = 195/214 (91.12%), Query Frame = 1 

Query: 1   MRLVLRISHLLPNVLANTFRSPALALNPLNVNGLHRDFSQPAWIEE-EEEVEIDQRRLPA 60
           MRLV RISHLLPNV ANT RS  +ALNPLN NG+HR+++QP+ IEE EEEVEIDQRRLPA
Sbjct: 1   MRLVSRISHLLPNVFANTIRSSTVALNPLNRNGVHRNYAQPSRIEEEEEEVEIDQRRLPA 60

Query: 61  DYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKRLGMTDMPVVGVMKAG 120
           DYDPANFDPT+HRSPPTDRVFRLVDEISGLTLVEVAELSSIL K+LGMT+MPV G MK G
Sbjct: 61  DYDPANFDPTEHRSPPTDRVFRLVDEISGLTLVEVAELSSILMKKLGMTEMPVAGYMKPG 120

Query: 121 AAGLAGMATKASSATAKEEKKTEKTVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDL 180
           A GLAGM  K SSATAKEEKK EKTV+ELKLESYEA+AKIKIIKEVRS TDLGLKEAKDL
Sbjct: 121 AVGLAGMVKKVSSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSLTDLGLKEAKDL 180

Query: 181 VEKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 214
           V+K PSVLKKGLSKEEGEQ+IEKMKALGAKVILE
Sbjct: 181 VDKAPSVLKKGLSKEEGEQIIEKMKALGAKVILE 214

[Close]
BLAST of CmoCh13G008740 vs. NCBI nr
Match: gi|703123768|ref|XP_010102896.1| (50S ribosomal protein [Morus notabilis])

HSP 1 Score: 288.5 bits (737), Expect = 9.5e-75
Identity = 161/216 (74.54%), Postives = 181/216 (83.80%), Query Frame = 1 

Query: 1   MRLVLRISHLLPN-VLANTFRSPALALNPLNVNGLHRDFSQPAWIEEE-EEVEIDQRRLP 60
           M LVLR+ H LPN      FRS  +ALNP N+NGL +++ QPA  EEE EEVE DQRRLP
Sbjct: 1   MSLVLRLKHHLPNGFYRKPFRSTVVALNPGNINGLWKNYGQPAIKEEEDEEVEFDQRRLP 60

Query: 61  ADYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKRLGMTDMPVVGVMKA 120
            DYDPA FDP++HRSPPT+RVFRLVDEISGLTL EVAEL +I  ++ GMT+ P VGVMK 
Sbjct: 61  TDYDPATFDPSEHRSPPTERVFRLVDEISGLTLAEVAELGAIFMRKRGMTEPPSVGVMKP 120

Query: 121 GAAGLAGMATKASSAT-AKEEKKTEKTVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAK 180
           GAAGLAGMA    +AT AKEEKK EKTVFELKLESYEAA+KIK+IKEVRSFTDLGLKEAK
Sbjct: 121 GAAGLAGMALATKAATAAKEEKKPEKTVFELKLESYEAASKIKLIKEVRSFTDLGLKEAK 180

Query: 181 DLVEKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 214
           DLVEKTPS+LKKGLSKEEGEQL+EK+K LGAKV+LE
Sbjct: 181 DLVEKTPSILKKGLSKEEGEQLVEKLKELGAKVVLE 216

[Close]
BLAST of CmoCh13G008740 vs. NCBI nr
Match: gi|1000939117|ref|XP_015583414.1| (PREDICTED: 50S ribosomal protein L7/L12 isoform X1 [Ricinus communis])

HSP 1 Score: 284.6 bits (727), Expect = 1.4e-73
Identity = 160/218 (73.39%), Postives = 184/218 (84.40%), Query Frame = 1 

Query: 1   MRLVLRISH-LLPNVLANTFRSPALALNPLNVNG--LHRDFSQPAWI--EEEEEVEIDQR 60
           M L+LR+SH L   V      SP + LN +NVNG  L R ++Q A    EEEEEVEIDQR
Sbjct: 1   MSLILRLSHHLTSGVSKKPLFSPLVQLNLVNVNGVLLSRGYAQAARKDEEEEEEVEIDQR 60

Query: 61  RLPADYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKRLGMTDMPVVGV 120
           RLPADYDPA FDPT+HRSPPT+RVF+LVDE++GLTLVEVAELSSI+ K+ GMT++P VGV
Sbjct: 61  RLPADYDPATFDPTEHRSPPTERVFKLVDEVAGLTLVEVAELSSIIMKKRGMTELPTVGV 120

Query: 121 MKAGAAGLAGMATKASSATAKEEKKTEKTVFELKLESYEAAAKIKIIKEVRSFTDLGLKE 180
           +K GAAGLAGMA KA +A AKEEKK EKTVFELKLESYEAA+KIKIIKEVRSFTDLGLKE
Sbjct: 121 LKGGAAGLAGMAMKAPAAAAKEEKKPEKTVFELKLESYEAASKIKIIKEVRSFTDLGLKE 180

Query: 181 AKDLVEKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 214
           AKDLVEKTPS+LK G+SKEE EQ+IEKMKA+GAKV++E
Sbjct: 181 AKDLVEKTPSILKAGVSKEEAEQIIEKMKAVGAKVVME 218

[Close]
BLAST of CmoCh13G008740 vs. NCBI nr
Match: gi|590681193|ref|XP_007041040.1| (Ribosomal protein L7/L12 isoform 1 [Theobroma cacao])

HSP 1 Score: 281.6 bits (719), Expect = 1.2e-72
Identity = 165/221 (74.66%), Postives = 183/221 (82.81%), Query Frame = 1 

Query: 1   MRLVLRISHLLPN--VLANTFRSPALALNPLNVNGLHRDFSQPAWIE---EEEEVEIDQR 60
           M LVLR+ H L +       F S  + LN  + N L R+FSQPA  E   EEEEVEIDQR
Sbjct: 1   MSLVLRLRHHLHSGFFCRKPFESQIVTLNAFSSNRLSRNFSQPAKQEQEDEEEEVEIDQR 60

Query: 61  RLPADYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKRLGMTDMPVVGV 120
           RLPADYDP+NFDPT+HRSPPT+RV+RLVDEISGLTL E+AEL SI+ K+ GMT+ P VGV
Sbjct: 61  RLPADYDPSNFDPTEHRSPPTERVWRLVDEISGLTLSEIAELGSIIMKKRGMTEPPTVGV 120

Query: 121 MKAGAA-GLAGMATKASS--ATAKEEKKTEKTVFELKLESYEAAAKIKIIKEVRSFTDLG 180
           MKAGAA GLAGMA KA+   A AKEEKK EKTVFELKLESYEAA+KIKIIKEVRSFTDLG
Sbjct: 121 MKAGAAAGLAGMAKKAAGGGAAAKEEKKAEKTVFELKLESYEAASKIKIIKEVRSFTDLG 180

Query: 181 LKEAKDLVEKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 214
           LKEAKDLVEKTP+VLKKG+SKEEGEQLIEKMKALGAKV+LE
Sbjct: 181 LKEAKDLVEKTPAVLKKGVSKEEGEQLIEKMKALGAKVVLE 221

The following BLAST results are available for this feature:
BLAST of CmoCh13G008740 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RL7_LIBAF1.4e-1745.0450S ribosomal protein L7/L12 OS=Liberibacter africanus GN=rplL PE=3 SV=1[more]
MNP1_SCHPO9.1e-1741.9154S ribosomal protein L12, mitochondrial OS=Schizosaccharomyces pombe (strain 97... [more]
RL7_OCHA41.3e-1542.8650S ribosomal protein L7/L12 OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6... [more]
RL7_PROM41.7e-1541.6750S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain MIT 9211) GN=rpl... [more]
RL7_BRUO22.2e-1542.1150S ribosomal protein L7/L12 OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC... [more]
BLAST of CmoCh13G008740 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LU08_CUCSA6.2e-8984.58Uncharacterized protein OS=Cucumis sativus GN=Csa_1G057000 PE=3 SV=1[more]
W9S8M4_9ROSA6.6e-7574.5450S ribosomal protein OS=Morus notabilis GN=L484_005958 PE=3 SV=1[more]
A0A061DXQ8_THECC8.1e-7374.66Ribosomal protein L7/L12 isoform 1 OS=Theobroma cacao GN=TCM_006020 PE=3 SV=1[more]
A0A061DWT8_THECC6.9e-7278.61Ribosomal protein L7/L12 isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_006020 P... [more]
M5WHF2_PRUPE2.6e-7174.54Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011350mg PE=3 SV=1[more]
BLAST of CmoCh13G008740 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G70190.14.0e-6367.02 Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, ... [more]
AT4G36420.18.1e-3250.34 Ribosomal protein L12 family protein[more]
AT4G37660.14.0e-2344.93 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein Cl... [more]
AT3G06040.13.4e-2237.75 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein Cl... [more]
AT2G03130.19.3e-2063.86 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein Cl... [more]
BLAST of CmoCh13G008740 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449454776|ref|XP_004145130.1|8.9e-8984.58PREDICTED: 54S ribosomal protein L12, mitochondrial [Cucumis sativus][more]
gi|659067613|ref|XP_008440389.1|8.9e-8985.05PREDICTED: 54S ribosomal protein L12, mitochondrial [Cucumis melo][more]
gi|703123768|ref|XP_010102896.1|9.5e-7574.5450S ribosomal protein [Morus notabilis][more]
gi|1000939117|ref|XP_015583414.1|1.4e-7373.39PREDICTED: 50S ribosomal protein L7/L12 isoform X1 [Ricinus communis][more]
gi|590681193|ref|XP_007041040.1|1.2e-7274.66Ribosomal protein L7/L12 isoform 1 [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000206Ribosomal_L7/12
IPR008932Ribosomal_L7/L12_oligo
IPR013823Ribosomal_L7/L12_C
IPR014719Ribosomal_L7/12_C/ClpS-like
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh13G008740.1CmoCh13G008740.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000206Ribosomal protein L7/L12HAMAPMF_00368Ribosomal_L7_L12coord: 76..213
score: 17
IPR008932Ribosomal protein L7/L12, oligomerisationPFAMPF16320Ribosomal_L12_Ncoord: 82..122
score: 9.9
IPR008932Ribosomal protein L7/L12, oligomerisationunknownSSF48300Ribosomal protein L7/12, oligomerisation (N-terminal) domaincoord: 81..142
score: 7.3
IPR013823Ribosomal protein L7/L12, C-terminalPRODOMPD001326coord: 150..212
score: 1.0
IPR013823Ribosomal protein L7/L12, C-terminalPFAMPF00542Ribosomal_L12coord: 146..212
score: 1.3
IPR014719Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-likeGENE3DG3DSA:3.30.1390.10coord: 140..212
score: 1.4
IPR014719Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-likeunknownSSF54736ClpS-likecoord: 142..212
score: 4.01
NoneNo IPR availablePANTHERPTHR24089FAMILY NOT NAMEDcoord: 43..213
score: 2.6
NoneNo IPR availablePANTHERPTHR24089:SF38750S RIBOSOMAL PROTEIN L7/L12-RELATEDcoord: 43..213
score: 2.6