WMU15204 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU15204
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown protein
Location	Chr3 : 4300518 .. 4302002 (-)
Sequence length	650

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

ACCCTCTTCCCTTTGATAGTCCCTTCTTCAACACTGATGGGGTTTTCTCCACTAAATCCTTTGCCTCTTTCAGACCTAAATCAGTGAAAACTTCTTACCTCCTTGATAATTTTAATCTTTTGCAGATGCTTCGTTAGACTCTAGTTTCAACTCGTAAACAGTCTTTTCTGCCTTCTTCTCCTCCTTGGCAGTTGCTGATGATGCCTTCATTCCCATTCCAGCCAATCCAGCAGCTCCTGGTTTCATAACTCCAACAACTGGCATGTCTGTCATTCCCAATTTTTCCTCAAAATGGAAGATAATTCAGAAATTTCAACTAATGTGAGCCCAGATATTTCATCTACAAGCCTAAAAACACGATCAGTCGGAGGACTACGGTGCTGTGTTGGATCAAAATTAGCAGGATCGTAATCAGCTGGAAGCCTTCTCTGGTCAATTTCTACCTCTTCCTCTTCCTCCTCTATCCGAGCAGGTTGAGCATAATTTCTATGTAATCCATTTATGTTGAGAGGATTGAGGGGCTAAGAGATGAGATTAAGCGCTGAGGCAGGGAACATGGTGGTTTGAAGTGAGCCGTGAGGACTGTGGATTGCCGATGATAATGGCTGAAGAAGCTTCAATCTCGTCCAGAAGGAGGTGAGTGAGCTCCA

Library


Library category	ESTs
watermelon fruit 10d library	1
watermelon fruit 18d library	1
watermelon fruit 26d library	1

Homology

[Close]

BLAST of WMU15204 vs. TAIR10
Match: AT1G70190.1 (AT1G70190.1 Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like)

HSP 1 Score: 53.5 bits (127), Expect = 1.8e-07
Identity = 31/76 (40.79%), Postives = 42/76 (55.26%), Query Frame = -2


Query: 2   IGWNGNEGIISNCQGGEEGRKDCLRVETRV*R-SICKRLKLSRR*EVFTDLGLKEAKDLV 61
           +G  G  G++S     EE + +    E ++       ++K+ +    FTDLGLKEAK LV
Sbjct: 116 VGVGGGGGMVSQSGVSEEAKVEKTVFEIKLESFEASAKIKIIKELRSFTDLGLKEAKALV 175

Query: 62  EKTPSVLKKGLSKGRG 121
           EKTP++LK GLSK  G
Sbjct: 176 EKTPAILKAGLSKEEG 191

Query: 122  181
           
Sbjct: 236  191

Query: 182  227
           
Sbjct: 296  191

[Close]

BLAST of WMU15204 vs. TrEMBL
Match: A0A0A0LU08_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G057000 PE=3 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.1e-24
Identity = 58/72 (80.56%), Postives = 63/72 (87.50%), Query Frame = -1


Query: 282 GLHRNYAQPARIXXXXXXXXIDQRRLPADYDPANFDPTQHRSPPTDRVFRLVDEISGLTL 341
           GLHRNYAQP+RI        IDQRRLPADYDPANFDPT+HRSPPTDRVFRLVDEISGLTL
Sbjct: 33  GLHRNYAQPSRIEEEEEEVEIDQRRLPADYDPANFDPTEHRSPPTDRVFRLVDEISGLTL 92

Query: 342 VEISELSSILRK 401
           VE++E+SSIL K
Sbjct: 93  VEVAEMSSILMK 104

Query: 402  461
           
Sbjct: 153  104

Query: 462  498
           
Sbjct: 213  104

[Close]

BLAST of WMU15204 vs. TrEMBL
Match: A0A0A0LU08_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G057000 PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.4e-03
Identity = 25/39 (64.10%), Postives = 30/39 (76.92%), Query Frame = -2


Query: 2   RLKLSRR*EVFTDLGLKEAKDLVEKTPSVLKKGLSKGRG 61
           ++K+ +     TDLGLKEAKDLV+K PSVLKKGLSK  G
Sbjct: 159 KIKIIKEVRSLTDLGLKEAKDLVDKAPSVLKKGLSKEEG 197

Query: 62   119
           
Sbjct: 219  197

HSP 2 Score: 42.4 bits (98), Expect = 8.4e-01
Identity = 25/56 (44.64%), Postives = 27/56 (48.21%), Query Frame = -3


Query: 118 EKLGMTDMPVVGVMKPXXXXXXXXXXXXXXXXXXXXXXXXXXVYELKLESNEASAK 177
           +KLGMT+MPV G MKP                          VYELKLES EASAK
Sbjct: 104 KKLGMTEMPVAGYMKPGAVGLAGMVKKGSSATAKEEKKAEKTVYELKLESYEASAK 159

Query: 178  237
           
Sbjct: 164  159

Query: 238  286
           
Sbjct: 224  159

HSP 3 Score: 100.9 bits (250), Expect = 2.0e-18
Identity = 48/52 (92.31%), Postives = 51/52 (98.08%), Query Frame = -1


Query: 282 IDQRRLPADYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEISELSSILRK 341
           IDQRRLPADYDPANFDPTQHRSPPT RVFRLVDEI+GLTLVE++ELSSILRK
Sbjct: 45  IDQRRLPADYDPANFDPTQHRSPPTARVFRLVDEIAGLTLVEVAELSSILRK 96

Query: 342  401
           
Sbjct: 105  96

Query: 402  438
           
Sbjct: 165  96

[Close]

BLAST of WMU15204 vs. TrEMBL
Match: F6HF68_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g01450 PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.4e-03
Identity = 25/39 (64.10%), Postives = 30/39 (76.92%), Query Frame = -2


Query: 2   RLKLSRR*EVFTDLGLKEAKDLVEKTPSVLKKGLSKGRG 61
           ++K+ +    FTDLGLKEAKDLVEK PSVLK G+SK  G
Sbjct: 151 KIKIIKEVRSFTDLGLKEAKDLVEKAPSVLKAGVSKEEG 189

Query: 62   119
           
Sbjct: 211  189

HSP 2 Score: 100.9 bits (250), Expect = 2.0e-18
Identity = 48/52 (92.31%), Postives = 51/52 (98.08%), Query Frame = -1


Query: 282 IDQRRLPADYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEISELSSILRK 341
           IDQRRLPADYDPANFDPTQHRSPPT RVFRLVDEI+GLTLVE++ELSSILRK
Sbjct: 45  IDQRRLPADYDPANFDPTQHRSPPTARVFRLVDEIAGLTLVEVAELSSILRK 96

Query: 342  401
           
Sbjct: 105  96

Query: 402  438
           
Sbjct: 165  96

[Close]

BLAST of WMU15204 vs. TrEMBL
Match: F6HX03_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s2478g00020 PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.4e-03
Identity = 25/39 (64.10%), Postives = 30/39 (76.92%), Query Frame = -2


Query: 2   RLKLSRR*EVFTDLGLKEAKDLVEKTPSVLKKGLSKGRG 61
           ++K+ +    FTDLGLKEAKDLVEK PSVLK G+SK  G
Sbjct: 151 KIKIIKEVRSFTDLGLKEAKDLVEKAPSVLKAGVSKEEG 189

Query: 62   119
           
Sbjct: 211  189

HSP 2 Score: 100.9 bits (250), Expect = 2.0e-18
Identity = 51/70 (72.86%), Postives = 57/70 (81.43%), Query Frame = -1


Query: 288 LHRNYAQPARIXXXXXXXX-IDQRRLPADYDPANFDPTQHRSPPTDRVFRLVDEISGLTL 347
           L RN +QPAR          IDQRRLPADYDPA FDPT+HRSPPTDRVFRLVDE++GLTL
Sbjct: 35  LSRNLSQPARKEEDDEDEVEIDQRRLPADYDPATFDPTEHRSPPTDRVFRLVDEVAGLTL 94

Query: 348 VEISELSSIL 407
           VE++ELSSIL
Sbjct: 95  VEVAELSSIL 104

Query: 408  467
           
Sbjct: 155  104

Query: 468  495
           
Sbjct: 215  104

[Close]

BLAST of WMU15204 vs. TrEMBL
Match: A0A059CBK4_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E04306 PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 3.6e-04
Identity = 26/39 (66.67%), Postives = 31/39 (79.49%), Query Frame = -2


Query: 2   RLKLSRR*EVFTDLGLKEAKDLVEKTPSVLKKGLSKGRG 61
           ++K+ +    FTDLGLKEAKDLVEKTP+VLK GLSK  G
Sbjct: 164 KIKIIKEVRSFTDLGLKEAKDLVEKTPAVLKAGLSKEEG 202

Query: 62   119
           
Sbjct: 224  202

HSP 2 Score: 100.5 bits (249), Expect = 2.6e-18
Identity = 50/70 (71.43%), Postives = 58/70 (82.86%), Query Frame = -1


Query: 282 RNYAQPARIXXXXXXXX-IDQRRLPADYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVE 341
           R++ QPAR          IDQR+LPADYDPANFDPT+HRSPP+DRV+RLVDE+SGLTLVE
Sbjct: 37  RHFGQPARKEEEEEEEVEIDQRKLPADYDPANFDPTEHRSPPSDRVWRLVDEVSGLTLVE 96

Query: 342 ISELSSILRK 401
           +SELSSIL K
Sbjct: 97  VSELSSILMK 106

Query: 402  461
           
Sbjct: 157  106

Query: 462  489
           
Sbjct: 217  106

[Close]

BLAST of WMU15204 vs. NCBI nr
Match: gi|449454776|ref|XP_004145130.1| (PREDICTED: 54S ribosomal protein L12, mitochondrial [Cucumis sativus])

HSP 1 Score: 122.1 bits (305), Expect = 1.2e-24
Identity = 58/72 (80.56%), Postives = 63/72 (87.50%), Query Frame = -1


Query: 282 GLHRNYAQPARIXXXXXXXXIDQRRLPADYDPANFDPTQHRSPPTDRVFRLVDEISGLTL 341
           GLHRNYAQP+RI        IDQRRLPADYDPANFDPT+HRSPPTDRVFRLVDEISGLTL
Sbjct: 33  GLHRNYAQPSRIEEEEEEVEIDQRRLPADYDPANFDPTEHRSPPTDRVFRLVDEISGLTL 92

Query: 342 VEISELSSILRK 401
           VE++E+SSIL K
Sbjct: 93  VEVAEMSSILMK 104

Query: 402  461
           
Sbjct: 153  104

Query: 462  498
           
Sbjct: 213  104

[Close]

BLAST of WMU15204 vs. NCBI nr
Match: gi|659067613|ref|XP_008440389.1| (PREDICTED: 54S ribosomal protein L12, mitochondrial [Cucumis melo])

HSP 1 Score: 121.7 bits (304), Expect = 1.6e-24
Identity = 58/72 (80.56%), Postives = 63/72 (87.50%), Query Frame = -1


Query: 282 GLHRNYAQPARIXXXXXXXXIDQRRLPADYDPANFDPTQHRSPPTDRVFRLVDEISGLTL 341
           G+HRNYAQP+RI        IDQRRLPADYDPANFDPT+HRSPPTDRVFRLVDEISGLTL
Sbjct: 33  GVHRNYAQPSRIEEEEEEVEIDQRRLPADYDPANFDPTEHRSPPTDRVFRLVDEISGLTL 92

Query: 342 VEISELSSILRK 401
           VE++ELSSIL K
Sbjct: 93  VEVAELSSILMK 104

Query: 402  461
           
Sbjct: 153  104

Query: 462  498
           
Sbjct: 213  104

[Close]

BLAST of WMU15204 vs. NCBI nr
Match: gi|747097710|ref|XP_011096828.1| (PREDICTED: 54S ribosomal protein L12, mitochondrial [Sesamum indicum])

HSP 1 Score: 102.4 bits (254), Expect = 9.8e-19
Identity = 51/73 (69.86%), Postives = 60/73 (82.19%), Query Frame = -1


Query: 282 GLHRNYAQPARIXXXXXXXX-IDQRRLPADYDPANFDPTQHRSPPTDRVFRLVDEISGLT 341
           G+ R++AQPAR+         IDQRRLPADYDPANFDPT+HRSPP+DRV+RLVDEISGLT
Sbjct: 34  GVTRHFAQPARMEDEEEEEVEIDQRRLPADYDPANFDPTEHRSPPSDRVWRLVDEISGLT 93

Query: 342 LVEISELSSILRK 401
           LVE  ELSSI+ +
Sbjct: 94  LVEAGELSSIIMR 106

Query: 402  461
           
Sbjct: 154  106

Query: 462  498
           
Sbjct: 214  106

[Close]

BLAST of WMU15204 vs. NCBI nr
Match: gi|719964277|ref|XP_010252189.1| (PREDICTED: 50S ribosomal protein L12, cyanelle [Nelumbo nucifera])

HSP 1 Score: 102.1 bits (253), Expect = 1.3e-18
Identity = 48/71 (67.61%), Postives = 56/71 (78.87%), Query Frame = -1


Query: 282 LHRNYAQPARIXXXXXXXXIDQRRLPADYDPANFDPTQHRSPPTDRVFRLVDEISGLTLV 341
           + R +  PA+         IDQRRLPA+YDP NFDPT+HRSPPTDRVFRLVDE+SGLTLV
Sbjct: 35  ISRRFGAPAKNEEEEELEMIDQRRLPANYDPTNFDPTEHRSPPTDRVFRLVDEVSGLTLV 94

Query: 342 EISELSSILRK 401
           E++ELSSIL K
Sbjct: 95  EVAELSSILMK 105

Query: 402  461
           
Sbjct: 155  105

Query: 462  495
           
Sbjct: 215  105

[Close]

BLAST of WMU15204 vs. NCBI nr
Match: gi|970012578|ref|XP_015067232.1| (PREDICTED: 50S ribosomal protein L7/L12-like [Solanum pennellii])

HSP 1 Score: 100.9 bits (250), Expect = 2.9e-18
Identity = 50/70 (71.43%), Postives = 58/70 (82.86%), Query Frame = -1


Query: 282 RNYAQPARIXXXXXXXX-IDQRRLPADYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVE 341
           R++ QPAR          IDQR+LPADYDPANFDPT+HRSPP+DRV+RLVDE+SGLTLVE
Sbjct: 37  RHFGQPARQEEEEEEEVEIDQRKLPADYDPANFDPTEHRSPPSDRVWRLVDEVSGLTLVE 96

Query: 342 ISELSSILRK 401
           +SELSSIL K
Sbjct: 97  VSELSSILMK 106

Query: 402  461
           
Sbjct: 157  106

Query: 462  489
           
Sbjct: 217  106

The following BLAST results are available for this feature:

BLAST of WMU15204 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G70190.1	1.8e-07	40.79	Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, ...	[more]

BLAST of WMU15204 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LU08_CUCSA	1.1e-24	80.56	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G057000 PE=3 SV=1	[more]
A0A0A0LU08_CUCSA	1.4e-03	64.10	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G057000 PE=3 SV=1	[more]
F6HF68_VITVI	1.4e-03	64.10	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g01450 PE=3 SV=...	[more]
F6HX03_VITVI	1.4e-03	64.10	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s2478g00020 PE=3 SV=...	[more]
A0A059CBK4_EUCGR	3.6e-04	66.67	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E04306 PE=3 SV=1	[more]

BLAST of WMU15204 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449454776\|ref\|XP_004145130.1\|	1.2e-24	80.56	PREDICTED: 54S ribosomal protein L12, mitochondrial [Cucumis sativus]	[more]
gi\|659067613\|ref\|XP_008440389.1\|	1.6e-24	80.56	PREDICTED: 54S ribosomal protein L12, mitochondrial [Cucumis melo]	[more]
gi\|747097710\|ref\|XP_011096828.1\|	9.8e-19	69.86	PREDICTED: 54S ribosomal protein L12, mitochondrial [Sesamum indicum]	[more]
gi\|719964277\|ref\|XP_010252189.1\|	1.3e-18	67.61	PREDICTED: 50S ribosomal protein L12, cyanelle [Nelumbo nucifera]	[more]
gi\|970012578\|ref\|XP_015067232.1\|	2.9e-18	71.43	PREDICTED: 50S ribosomal protein L7/L12-like [Solanum pennellii]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR008932	Ribosomal_L7/L12_oligo

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla019335	Cla019335	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S1_0107702	S1_0107702	EST
S2_0124778	S2_0124778	EST
S3_0172162	S3_0172162	EST

InterPro

Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008932	Ribosomal protein L7/L12, oligomerisation	PFAM	PF16320	Ribosomal_L12_N	coord: 103..143 score: 1.
IPR008932	Ribosomal protein L7/L12, oligomerisation	unknown	SSF48300	Ribosomal protein L7/12, oligomerisation (N-terminal) domain	coord: 102..143 score: 2.6
None	No IPR available	GENE3D	G3DSA:1.20.5.710		coord: 103..145 score: 1.
None	No IPR available	PANTHER	PTHR24089	FAMILY NOT NAMED	coord: 64..171 score: 2.0
None	No IPR available	PANTHER	PTHR24089:SF387	50S RIBOSOMAL PROTEIN L7/L12-RELATED	coord: 64..171 score: 2.0