Cla97C04G068720 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C04G068720
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	protein POLYCHOME
Location	Cla97Chr04 : 1400144 .. 1402546 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGAAGCAAGAGATAGATTGGAGAGGCAAGTGGATCATGCCGAGGTATTTGCTCGTCGGAGATCCGAAGGTATATTGGACGAGCAAGAAATGAATTCTCATTTGATAGGTACTCCGATTGCACGCGCTACAACGACGCCTACTGCTCAACAAAGACCTACGAATCCCGGCCCTGGTGGAGGTGGTTCGAATCCCAGACGCACTTTTGGTTCTCCCATTTCTGGTGGAATTGGACGTAATAGATTTCTTTACAGATCTCCAGTGTTTAACCGCGAGAATACGGCGGCTTCGAGTTCCCGGCGGAATAGATCTCGGGGTAGAAACAGTGTGTTACCGATTTGGTACCCAAGAACCCCTCTCCGCGACATAACTGCAGTTGTGAGGGTAATGACTAATTCCCCTGTTACTTTGATATTGTTCTGCTAAATCTTTCGAAATCTTTCAATTTTTTGGTTTATTGTGCATTTGATTCATATTGTTTATGGAAAACCTATTCTCATTGTTATCACATATGGTCTTTGGTATGCATATACGTACGTACTCCAATAGCTGTAAGATTTGTTCTCTGATACAGTATATTTGTTGGATTTGTTCTAATTTGAATTTGCTTGATCTTCCGGAAACCCCCTTTTGATTTTTCTGGTGTAGTCGTTGTGATTCTTGTTTCTGTTTTTCAGTTGGTAAGCATTTGTTTTGATTTGATTTAATTGAATTGATTTTTAACCAAAAATGTCATTGCATATGTTTAATCCTTTTTTGAGAATCCTCAGATTGGATCACTTTCCTTTCTCTTTAAGTTAATTAATGAATAAATTTTCAGTGTTTTTAAGCTATGTACTACCTACCTGTTTGTCTAAAAAGAAGATTCTTTTGGTTTTGTAACATCCATGCCCAATGATTTCATATGAAACATCAACAGTCTGGATAATGAGATCCTGTCCACCATTAATTAAAGTTAACATAATTCGTCTCCTTTTTAGTTTTTATATTCATTGTTTTCTTGGATTCCAATCGGTTTTTAGGCCTCATTTTCAGCTGTTATTAGAAATACTTTTTGGTGGGCTCAATATGCTTCGGCTGGTTACTAGGATGTGCTGACTAGGTAGTCCAATCAACATTTTGGGCCTATGTTAAAGCTGTGATTTGGATGCAAATTGCTGATTTAGTAGCCAATAAATTTTTTTAAAAATTATGTTTGAAAAGCATATTAACACTGATGTTATCGTTACTTGTGGGACATGTGTAGAATGCTTATTAAAGCATGCGTTGACACTTGTAAACTACTTGACCTGACGTTTCAATGTAGTAATATTAATTAATTTATTTTGTTTGAAAAGTTTAATGGACGGAAAAATATATACTTTGAGTGAAAAATATCAAATTAATTTTTCAAGCATTTAGGTGCATATATATTATTGACCTTAAATTTGTTAAGATCACAGAATTCCTTTTTAAATAACATATTGTAAGACATTATGCATCACTCTTTCTCAGATATTCTCATGCACTTGAAGCAAACTATTATAAGTAAAAGTCTTTGTAATGTATAAAAATGATTATATGATTTTAAAAAAATGTATAAAGTAAATGTGCCATTGCTTTTGGTGTCCTCATTTTTCAACAAATATCATATCACGTTATAATGCATCATGTCTTCTCCATGTCACGTGTTTGTGTCTGTTGTACCATTCATCTTAAATCTTTACTACTTTTTAAGTTGATTCACTGATAATTTTGCTGTCAACGGTAAACATTCCCTCTGTCTTTTAGAAGTCTTCTTTCAACTATGTTCTTTCACTAATCAAAGCGAATTCTGTTTCAAGCATTGCATCTAGACTCCAAGTTCTTTCCTTTCCAAATGTTCCAACTTATTTTGTTTTATCCTGCACGTGGGCATTTGGATATTTAGTTACTGCTCCATGTTATTCAATATCACCTGTGTTTTCCATAGAAATCTCCTTTCCTAGTTTTTCATTTGAGGCAATTGAAAGGTCATTTAGTTAATATGGAGAGAATGTTATTGTTTTTTGTAATCAGGCAATTGAAAGGACAAGAGCTCGCTTGAGAGAAAACGAAGGCCAAGGAAGTGACAATAGTCCTGCTCCCTCGGACGAAAGAGCTTTAGAGTATAGCGTGTCTGTGGCAGGTGATCATCAAGAGCCAAGCATTTCTCTGGTCACCCCAAAACCAACCGTAGGTAAAGTTCCAAAGATAATTCTTGGAATCGCGAATCAGAATGTGGTAGGGGCCGAGACTCTCACTCCCCAGAAGAAGCTCTTGAACTCCATAGACAAAGTGGAGAAAGTAGTAATGGAGGAATTGCAGAAATTGAAAAAAACTCCCAGTGCGAAGAAAGCAGAGAGGGAGAAAAGGGTTCGTACTTTAATGTCGTTTCGTTGA

mRNA sequence

ATGTCGGAAGCAAGAGATAGATTGGAGAGGCAAGTGGATCATGCCGAGGTATTTGCTCGTCGGAGATCCGAAGGTATATTGGACGAGCAAGAAATGAATTCTCATTTGATAGGTACTCCGATTGCACGCGCTACAACGACGCCTACTGCTCAACAAAGACCTACGAATCCCGGCCCTGGTGGAGGTGGTTCGAATCCCAGACGCACTTTTGGTTCTCCCATTTCTGGTGGAATTGGACGTAATAGATTTCTTTACAGATCTCCAGTGTTTAACCGCGAGAATACGGCGGCTTCGAGTTCCCGGCGGAATAGATCTCGGGGTAGAAACAGTGTGTTACCGATTTGGTACCCAAGAACCCCTCTCCGCGACATAACTGCAGTTGTGAGGGCAATTGAAAGGACAAGAGCTCGCTTGAGAGAAAACGAAGGCCAAGGAAGTGACAATAGTCCTGCTCCCTCGGACGAAAGAGCTTTAGAGTATAGCGTGTCTGTGGCAGGTGATCATCAAGAGCCAAGCATTTCTCTGGTCACCCCAAAACCAACCGTAGGTAAAGTTCCAAAGATAATTCTTGGAATCGCGAATCAGAATGTGGTAGGGGCCGAGACTCTCACTCCCCAGAAGAAGCTCTTGAACTCCATAGACAAAGTGGAGAAAGTAGTAATGGAGGAATTGCAGAAATTGAAAAAAACTCCCAGTGCGAAGAAAGCAGAGAGGGAGAAAAGGGTTCGTACTTTAATGTCGTTTCGTTGA

Coding sequence (CDS)

ATGTCGGAAGCAAGAGATAGATTGGAGAGGCAAGTGGATCATGCCGAGGTATTTGCTCGTCGGAGATCCGAAGGTATATTGGACGAGCAAGAAATGAATTCTCATTTGATAGGTACTCCGATTGCACGCGCTACAACGACGCCTACTGCTCAACAAAGACCTACGAATCCCGGCCCTGGTGGAGGTGGTTCGAATCCCAGACGCACTTTTGGTTCTCCCATTTCTGGTGGAATTGGACGTAATAGATTTCTTTACAGATCTCCAGTGTTTAACCGCGAGAATACGGCGGCTTCGAGTTCCCGGCGGAATAGATCTCGGGGTAGAAACAGTGTGTTACCGATTTGGTACCCAAGAACCCCTCTCCGCGACATAACTGCAGTTGTGAGGGCAATTGAAAGGACAAGAGCTCGCTTGAGAGAAAACGAAGGCCAAGGAAGTGACAATAGTCCTGCTCCCTCGGACGAAAGAGCTTTAGAGTATAGCGTGTCTGTGGCAGGTGATCATCAAGAGCCAAGCATTTCTCTGGTCACCCCAAAACCAACCGTAGGTAAAGTTCCAAAGATAATTCTTGGAATCGCGAATCAGAATGTGGTAGGGGCCGAGACTCTCACTCCCCAGAAGAAGCTCTTGAACTCCATAGACAAAGTGGAGAAAGTAGTAATGGAGGAATTGCAGAAATTGAAAAAAACTCCCAGTGCGAAGAAAGCAGAGAGGGAGAAAAGGGTTCGTACTTTAATGTCGTTTCGTTGA

Protein sequence

MSEARDRLERQVDHAEVFARRRSEGILDEQEMNSHLIGTPIARATTTPTAQQRPTNPGPGGGGSNPRRTFGSPISGGIGRNRFLYRSPVFNRENTAASSSRRNRSRGRNSVLPIWYPRTPLRDITAVVRAIERTRARLRENEGQGSDNSPAPSDERALEYSVSVAGDHQEPSISLVTPKPTVGKVPKIILGIANQNVVGAETLTPQKKLLNSIDKVEKVVMEELQKLKKTPSAKKAEREKRVRTLMSFR

Homology

[Close]

BLAST of Cla97C04G068720 vs. NCBI nr
Match: XP_004150162.1 (PREDICTED: protein POLYCHOME [Cucumis sativus])

HSP 1 Score: 335.1 bits (858), Expect = 2.0e-88
Identity = 191/249 (76.71%), Postives = 201/249 (80.72%), Query Frame = 0


Query: 1   MSEARDRLERQVDHAEVFARRRSEGILDEQEMNSHLIGTPIARATTTPTAQQRPTNPGPG 60
           MSEARDRLERQVD+AEVFARRRSEGILDEQEM S+LIGTPIARATTT TAQQRPTNPGPG
Sbjct: 1   MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTNTAQQRPTNPGPG 60

Query: 61  GGGSNPRRTFGSPISGGIGRNRFLYRSPVFNRENTAASSSRRNRSRGRNSVLPIWYPRTP 120
           GGG+N RRTFGSPISGGIGRNRFLYR+PV +REN +A SSRR+RSRGRNSVLPIWYPRTP
Sbjct: 61  GGGTNLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTP 120

Query: 121 LRDITAVVRAIERTRARLXXXXXXXXDNSPAPSDERALEYSVSVAGDHQEPSISLVTPKP 180
           LRDITAVVRAIERT    XXXXXXXX       DERALEYSVSVA DHQEP ISL+TPKP
Sbjct: 121 LRDITAVVRAIERTXXXXXXXXXXXXXXXXXXXDERALEYSVSVASDHQEPIISLLTPKP 180

Query: 181 TVGKVPKIILGIANQNVVGAETLTPQKKLLNSIDKXXXXXXXXXXXXXXXXXXXXXXXXX 240
           TVGKVPKI+ GIAN+N VGAE LTPQKKLLNSIDK                         
Sbjct: 181 TVGKVPKILRGIANENTVGAEILTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK 240

Query: 241 XVRTLMSFR 250
            VRTLMSFR
Sbjct: 241 RVRTLMSFR 249

[Close]

BLAST of Cla97C04G068720 vs. NCBI nr
Match: KGN53824.1 (hypothetical protein Csa_4G152290 [Cucumis sativus])

HSP 1 Score: 335.1 bits (858), Expect = 2.0e-88
Identity = 191/249 (76.71%), Postives = 201/249 (80.72%), Query Frame = 0


Query: 1   MSEARDRLERQVDHAEVFARRRSEGILDEQEMNSHLIGTPIARATTTPTAQQRPTNPGPG 60
           MSEARDRLERQVD+AEVFARRRSEGILDEQEM S+LIGTPIARATTT TAQQRPTNPGPG
Sbjct: 65  MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTNTAQQRPTNPGPG 124

Query: 61  GGGSNPRRTFGSPISGGIGRNRFLYRSPVFNRENTAASSSRRNRSRGRNSVLPIWYPRTP 120
           GGG+N RRTFGSPISGGIGRNRFLYR+PV +REN +A SSRR+RSRGRNSVLPIWYPRTP
Sbjct: 125 GGGTNLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTP 184

Query: 121 LRDITAVVRAIERTRARLXXXXXXXXDNSPAPSDERALEYSVSVAGDHQEPSISLVTPKP 180
           LRDITAVVRAIERT    XXXXXXXX       DERALEYSVSVA DHQEP ISL+TPKP
Sbjct: 185 LRDITAVVRAIERTXXXXXXXXXXXXXXXXXXXDERALEYSVSVASDHQEPIISLLTPKP 244

Query: 181 TVGKVPKIILGIANQNVVGAETLTPQKKLLNSIDKXXXXXXXXXXXXXXXXXXXXXXXXX 240
           TVGKVPKI+ GIAN+N VGAE LTPQKKLLNSIDK                         
Sbjct: 245 TVGKVPKILRGIANENTVGAEILTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK 304

Query: 241 XVRTLMSFR 250
            VRTLMSFR
Sbjct: 305 RVRTLMSFR 313

[Close]

BLAST of Cla97C04G068720 vs. NCBI nr
Match: XP_008460799.1 (PREDICTED: protein POLYCHOME [Cucumis melo])

HSP 1 Score: 294.3 bits (752), Expect = 3.9e-76
Identity = 175/249 (70.28%), Postives = 185/249 (74.30%), Query Frame = 0


Query: 1   MSEARDRLERQVDHAEVFARRRSEGILDEQEMNSHLIGTPIARATTTPTAQQRPTNPGPG 60
           MSEARDRLERQVD+AEVFARRRSEGILDEQEM S+LIGTPIARAT               
Sbjct: 1   MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATXXXXXXXXXXXXXXX 60

Query: 61  GGGSNPRRTFGSPISGGIGRNRFLYRSPVFNRENTAASSSRRNRSRGRNSVLPIWYPRTP 120
              +N RRTFGSPISGGIGRNRFLYR+PV +REN +A SSRR+RSRGRNSVLPIWYPRTP
Sbjct: 61  XXXANLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTP 120

Query: 121 LRDITAVVRAIERTRARLXXXXXXXXDNSPAPSDERALEYSVSVAGDHQEPSISLVTPKP 180
           LRDITAVVRAIERT    XXXXXXXX       DERALEYSVSVA DHQEP ISL+TPKP
Sbjct: 121 LRDITAVVRAIERTXXXXXXXXXXXXXXXXXXXDERALEYSVSVASDHQEPIISLLTPKP 180

Query: 181 TVGKVPKIILGIANQNVVGAETLTPQKKLLNSIDKXXXXXXXXXXXXXXXXXXXXXXXXX 240
           TVGKVPKI+ GIAN+N VGAETLTPQKKLLNSIDK                         
Sbjct: 181 TVGKVPKILRGIANENTVGAETLTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK 240

Query: 241 XVRTLMSFR 250
            VRTLMSFR
Sbjct: 241 RVRTLMSFR 249

[Close]

BLAST of Cla97C04G068720 vs. NCBI nr
Match: XP_023543597.1 (protein POLYCHOME-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 291.2 bits (744), Expect = 3.3e-75
Identity = 181/249 (72.69%), Postives = 194/249 (77.91%), Query Frame = 0


Query: 1   MSEARDRLERQVDHAEVFARRRSEGILDEQEMNSHLIGTPIARATTTPTAQQRPTNPGPG 60
           MSE+RDRLERQVDHAEVFAR RSEGILDE+EM+++L+GTPI+RATTT T QQRPT     
Sbjct: 1   MSESRDRLERQVDHAEVFARWRSEGILDEKEMSTNLLGTPISRATTTTTVQQRPT----- 60

Query: 61  GGGSNPRRTFGSPISGGIGRNRFLYRSPVFNRENTAASSSRRNRSRGRNSVLPIWYPRTP 120
               N RR+FGSPISGGIGRNRFLYRSPVF+REN  A SSRR+RSRGRNSVLPIWYPRTP
Sbjct: 61  ----NLRRSFGSPISGGIGRNRFLYRSPVFSRENAVAGSSRRSRSRGRNSVLPIWYPRTP 120

Query: 121 LRDITAVVRAIERTRARLXXXXXXXXDNSPAPSDERALEYSVSVAGDHQEPSISLVTPKP 180
           LRDITAVVRAIERTRAR+        D SPAPSDER L           E SI LVTPK 
Sbjct: 121 LRDITAVVRAIERTRARMKENKGPGSDISPAPSDERVL-----------EASIFLVTPKA 180

Query: 181 TVGKVPKIILGIANQNVVGAETLTPQKKLLNSIDKXXXXXXXXXXXXXXXXXXXXXXXXX 240
           T+GKVPKI+ GI NQNV GAETLTPQ KLLNSIDK       XXXXXXXXXXXXXXX   
Sbjct: 181 TIGKVPKILRGITNQNVGGAETLTPQNKLLNSIDKVEKVVMEXXXXXXXXXXXXXXXREK 229

Query: 241 XVRTLMSFR 250
            VRTLMSFR
Sbjct: 241 RVRTLMSFR 229

[Close]

BLAST of Cla97C04G068720 vs. NCBI nr
Match: XP_022151615.1 (protein POLYCHOME [Momordica charantia])

HSP 1 Score: 286.6 bits (732), Expect = 8.2e-74
Identity = 156/213 (73.24%), Postives = 170/213 (79.81%), Query Frame = 0


Query: 1   MSEARDRLERQVDHAEVFARRRSEGILDEQEMNSHLIGTPIARATTTPTAQQRPTNPGPG 60
           MSE+RDRLERQVD+AE F  RR  GIL + E+      TP+ R T T TA QRP+N GPG
Sbjct: 1   MSESRDRLERQVDYAEFFVTRRXGGILVDPEV------TPVVRPTATTTAPQRPSNLGPG 60

Query: 61  GGGSNPRRTFGSPISGGIGRNRFLYRSPVFNRENTAASSSRRNRSRGRNSVLPIWYPRTP 120
           GGG   RR+FGSPISGGIGRNRFLYRSPV NREN AA SSRR+RSRGRNSVLP WYPRTP
Sbjct: 61  GGGVPLRRSFGSPISGGIGRNRFLYRSPVMNRENAAAGSSRRSRSRGRNSVLPSWYPRTP 120

Query: 121 LRDITAVVRAIERTRARLXXXXXXXXDNSPAPSDERALEYSVSVAGDHQEPSISLVTPKP 180
           LRDITAVVRAIERTRARL        DN+PAPSD+RA++ S SVAGDHQEPSISL+TPKP
Sbjct: 121 LRDITAVVRAIERTRARLRENEGQGSDNTPAPSDQRAIDSSASVAGDHQEPSISLITPKP 180

Query: 181 TVGKVPKIILGIANQNVVGAETLTPQKKLLNSI 214
           TVG V KI+ GIANQN   AE LTPQKKLLNSI
Sbjct: 181 TVGGVKKILRGIANQNAGEAEFLTPQKKLLNSI 207

[Close]

BLAST of Cla97C04G068720 vs. TrEMBL
Match: tr|A0A0A0KY99|A0A0A0KY99_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G152290 PE=4 SV=1)

HSP 1 Score: 335.1 bits (858), Expect = 1.3e-88
Identity = 191/249 (76.71%), Postives = 201/249 (80.72%), Query Frame = 0


Query: 1   MSEARDRLERQVDHAEVFARRRSEGILDEQEMNSHLIGTPIARATTTPTAQQRPTNPGPG 60
           MSEARDRLERQVD+AEVFARRRSEGILDEQEM S+LIGTPIARATTT TAQQRPTNPGPG
Sbjct: 65  MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTNTAQQRPTNPGPG 124

Query: 61  GGGSNPRRTFGSPISGGIGRNRFLYRSPVFNRENTAASSSRRNRSRGRNSVLPIWYPRTP 120
           GGG+N RRTFGSPISGGIGRNRFLYR+PV +REN +A SSRR+RSRGRNSVLPIWYPRTP
Sbjct: 125 GGGTNLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTP 184

Query: 121 LRDITAVVRAIERTRARLXXXXXXXXDNSPAPSDERALEYSVSVAGDHQEPSISLVTPKP 180
           LRDITAVVRAIERT    XXXXXXXX       DERALEYSVSVA DHQEP ISL+TPKP
Sbjct: 185 LRDITAVVRAIERTXXXXXXXXXXXXXXXXXXXDERALEYSVSVASDHQEPIISLLTPKP 244

Query: 181 TVGKVPKIILGIANQNVVGAETLTPQKKLLNSIDKXXXXXXXXXXXXXXXXXXXXXXXXX 240
           TVGKVPKI+ GIAN+N VGAE LTPQKKLLNSIDK                         
Sbjct: 245 TVGKVPKILRGIANENTVGAEILTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK 304

Query: 241 XVRTLMSFR 250
            VRTLMSFR
Sbjct: 305 RVRTLMSFR 313

[Close]

BLAST of Cla97C04G068720 vs. TrEMBL
Match: tr|A0A1S3CDA1|A0A1S3CDA1_CUCME (protein POLYCHOME OS=Cucumis melo OX=3656 GN=LOC103499559 PE=4 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 2.6e-76
Identity = 175/249 (70.28%), Postives = 185/249 (74.30%), Query Frame = 0


Query: 1   MSEARDRLERQVDHAEVFARRRSEGILDEQEMNSHLIGTPIARATTTPTAQQRPTNPGPG 60
           MSEARDRLERQVD+AEVFARRRSEGILDEQEM S+LIGTPIARAT               
Sbjct: 1   MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATXXXXXXXXXXXXXXX 60

Query: 61  GGGSNPRRTFGSPISGGIGRNRFLYRSPVFNRENTAASSSRRNRSRGRNSVLPIWYPRTP 120
              +N RRTFGSPISGGIGRNRFLYR+PV +REN +A SSRR+RSRGRNSVLPIWYPRTP
Sbjct: 61  XXXANLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTP 120

Query: 121 LRDITAVVRAIERTRARLXXXXXXXXDNSPAPSDERALEYSVSVAGDHQEPSISLVTPKP 180
           LRDITAVVRAIERT    XXXXXXXX       DERALEYSVSVA DHQEP ISL+TPKP
Sbjct: 121 LRDITAVVRAIERTXXXXXXXXXXXXXXXXXXXDERALEYSVSVASDHQEPIISLLTPKP 180

Query: 181 TVGKVPKIILGIANQNVVGAETLTPQKKLLNSIDKXXXXXXXXXXXXXXXXXXXXXXXXX 240
           TVGKVPKI+ GIAN+N VGAETLTPQKKLLNSIDK                         
Sbjct: 181 TVGKVPKILRGIANENTVGAETLTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK 240

Query: 241 XVRTLMSFR 250
            VRTLMSFR
Sbjct: 241 RVRTLMSFR 249

[Close]

BLAST of Cla97C04G068720 vs. TrEMBL
Match: tr|A0A2I4DN34|A0A2I4DN34_9ROSI (protein POLYCHOME-like OS=Juglans regia OX=51240 GN=LOC108981745 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 6.3e-38
Identity = 121/265 (45.66%), Postives = 149/265 (56.23%), Query Frame = 0


Query: 1   MSEARDRLERQVDHAEVFARRRSEGI---LDEQEMNSHLIGTPIARAT--TTPTAQQRPT 60
           M E+RDR+ R VD A +FARRRS  +   L+EQE  S+L G+PI R T  TTP  + R T
Sbjct: 1   MPESRDRMSRPVDLASLFARRRSASVGVALEEQETGSNLFGSPIERVTIATTPATRGR-T 60

Query: 61  NPGPGGGGSNPRRTFGSPISGGIGRNRFLYRSPVFNRENTAASSSRRNRSRGR--NSVLP 120
             G   GG   R  FG+P S    R R +Y +P   REN  + S+RR  +RGR  +SVLP
Sbjct: 61  ALGATRGGGLRRGGFGTPRS---VRGRIMYGTPASGREN--SQSTRRGSARGRRGSSVLP 120

Query: 121 IWYPRTPLRDITAVVRAIERTRARLXXXXXXXXDNSPAPSDERALEYSVSVAGDHQEPSI 180
            +YPRTPLRDIT+VVRAIER RARL        +N PA   +  ++ S+ V G   E  +
Sbjct: 121 SYYPRTPLRDITSVVRAIERRRARLRDVEGQQIEN-PATEGQSVVDPSLPVTGAQLEHDL 180

Query: 181 SLVTPK---------PTVGKVPKIILGIANQNVVGAETLTPQKKLLNSIDKXXXXXXXXX 240
           SL +P          P VGKVPKI+LGIAN+N   +E +TPQKKLLNSIDK         
Sbjct: 181 SLTSPNPDIGVKPRTPAVGKVPKILLGIANENAGESEFVTPQKKLLNSIDKVEKVVMEEL 240

Query: 241 XXXXXXXXXXXXXXXXXVRTLMSFR 250
                            VRTLMS R
Sbjct: 241 QKLKRTPSAKKAEREKRVRTLMSMR 258

[Close]

BLAST of Cla97C04G068720 vs. TrEMBL
Match: tr|A0A2N9HHY2|A0A2N9HHY2_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS39407 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 1.8e-37
Identity = 123/265 (46.42%), Postives = 148/265 (55.85%), Query Frame = 0


Query: 1   MSEARDRLERQVDHAEVFARRRSEGI---LDEQEMNSHLIGTPI-ARATTTPTAQQRPTN 60
           M E+RDRL R +D+A VF+ RRS GI   LD+ EM S+L G+P+ AR   T T     T 
Sbjct: 1   MPESRDRLSRPLDYAAVFSHRRSAGIGVLLDDPEMGSNLFGSPLPARRVATVT-----TP 60

Query: 61  PGPGGGGSNPRRTFGSPISGGIGRNRFLYRSPVFNRENT-AASSSRRNRSRGR--NSVLP 120
              G  G    R  G+P S    R R LY SP F RENT + S+ RRN  RGR  +SVLP
Sbjct: 61  ATRGRTGLRLTRGRGTPRS---MRGRNLYGSPDFGRENTPSTSTGRRNSVRGRPGSSVLP 120

Query: 121 IWYPRTPLRDITAVVRAIERTRARLXXXXXXXXDNSPAPSDERALEYSVSVAGDHQEPSI 180
            WYPR PLRDITAVVRAIER RARL        + SP P  +R L+ SV+ +G   + +I
Sbjct: 121 SWYPRAPLRDITAVVRAIERRRARLGDVEGQPIE-SPIPEGQRVLDPSVTPSGAQLKHNI 180

Query: 181 SLVTPK---------PTVGKVPKIILGIANQNVVGAETLTPQKKLLNSIDKXXXXXXXXX 240
           S+++P          P VGKVPKI+LGI +QN   +E LTPQKKLLNSID          
Sbjct: 181 SMISPNTAVGVKPCTPAVGKVPKILLGITDQNAGESEFLTPQKKLLNSIDTVEKVVMEEL 240

Query: 241 XXXXXXXXXXXXXXXXXVRTLMSFR 250
                            VRTLMS R
Sbjct: 241 QKLKRTPGAKKAEREKRVRTLMSMR 256

[Close]

BLAST of Cla97C04G068720 vs. TrEMBL
Match: tr|A0A2N9ISW9|A0A2N9ISW9_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS55834 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 3.1e-37
Identity = 123/265 (46.42%), Postives = 147/265 (55.47%), Query Frame = 0


Query: 1   MSEARDRLERQVDHAEVFARRRSEGI---LDEQEMNSHLIGTPI-ARATTTPTAQQRPTN 60
           M E RDRL R +D+A VF+ RRS GI   LD+ EM S+L G+P+ AR   T T     T 
Sbjct: 1   MPELRDRLSRPLDYAAVFSHRRSAGIGVLLDDPEMGSNLFGSPLPARRVATVT-----TP 60

Query: 61  PGPGGGGSNPRRTFGSPISGGIGRNRFLYRSPVFNRENT-AASSSRRNRSRGR--NSVLP 120
              G  G    R  G+P S    R R LY SP F RENT + S+ RRN  RGR  +SVLP
Sbjct: 61  ATRGRTGLRLTRGRGTPRS---MRGRNLYGSPDFGRENTPSTSTGRRNSVRGRPGSSVLP 120

Query: 121 IWYPRTPLRDITAVVRAIERTRARLXXXXXXXXDNSPAPSDERALEYSVSVAGDHQEPSI 180
            WYPR PLRDITAVVRAIER RARL        + SP P  +R L+ SV+ +G   + +I
Sbjct: 121 SWYPRAPLRDITAVVRAIERRRARLGDVEGQPIE-SPIPEGQRVLDPSVTPSGAQLKHNI 180

Query: 181 SLVTPK---------PTVGKVPKIILGIANQNVVGAETLTPQKKLLNSIDKXXXXXXXXX 240
           S+++P          P VGKVPKI+LGI +QN   +E LTPQKKLLNSID          
Sbjct: 181 SMISPNTAVGVKPCTPAVGKVPKILLGITDQNAGESEFLTPQKKLLNSIDTVEKVVMEEL 240

Query: 241 XXXXXXXXXXXXXXXXXVRTLMSFR 250
                            VRTLMS R
Sbjct: 241 QKLKRTPGAKKAEREKRVRTLMSMR 256

[Close]

BLAST of Cla97C04G068720 vs. Swiss-Prot
Match: sp|O48533|PYM_ARATH (Protein POLYCHOME OS=Arabidopsis thaliana OX=3702 GN=PYM PE=1 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 6.1e-36
Identity = 108/261 (41.38%), Postives = 135/261 (51.72%), Query Frame = 0


Query: 1   MSEARDRLERQVDHAEVFARRRSEGI-LDEQEMNSHLIGTPIARATTTPTAQQRPTNPGP 60
           M EARDR+ERQVD+   F  RRS GI LDE     +L G+P+ R  +  T        G 
Sbjct: 1   MPEARDRIERQVDYPAAFLNRRSHGILLDEPATQHNLFGSPVQRVPSEATGGLGSIGQGS 60

Query: 61  -GGGGSNPRRTFGSPISGGIGRNRFLYRSPVFNRENTAASSSRRNRSRGRNSVLPIWYPR 120
             G G   R  FG   +GG  R +  +RSP   REN +   +RR R+R  NSVLP WYPR
Sbjct: 61  MTGRGGLVRGNFGIRRTGGGRRGQIQFRSPQ-GRENMSLGVTRRGRARASNSVLPSWYPR 120

Query: 121 TPLRDITAVVRAIERTRARLXXXXXXXXDNSPAPSDERALEYSVSVAGDHQEPSISLVTP 180
           TPLRDI+AVVRAIER RAR+        + +P P     L+  V ++G H E   S+VTP
Sbjct: 121 TPLRDISAVVRAIERRRARMGEGVGRDIE-TPTPQQLGVLDSLVPLSGAHLEHDYSMVTP 180

Query: 181 KPTVG----------KVPKIILGIANQNVVGAETLTPQKKLLNSIDKXXXXXXXXXXXXX 240
            P++G          KV +I+L I  +N    + LTP+KKLLNSIDK             
Sbjct: 181 GPSIGFKRPWPPSTAKVHQILLDITRENTGEEDALTPEKKLLNSIDKVEKVVMEEIQKMK 240

Query: 241 XXXXXXXXXXXXXVRTLMSFR 250
                        VRTLMS R
Sbjct: 241 STPSAKRAEREKRVRTLMSMR 259

[Close]

BLAST of Cla97C04G068720 vs. Swiss-Prot
Match: sp|Q9M2R1|GIG1_ARATH (Protein GIGAS CELL1 OS=Arabidopsis thaliana OX=3702 GN=GIG1 PE=1 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.5e-21
Identity = 94/261 (36.02%), Postives = 118/261 (45.21%), Query Frame = 0


Query: 1   MSEARDRLERQVDHAEVFARRRSEGI-LDEQEMNSHLIGTPIARATTTPTAQQRPTNPGP 60
           M EARDR ER VD++ +FA RR  GI LDE +    LI +P+            P     
Sbjct: 1   MPEARDRTERPVDYSTIFANRRRHGILLDEPDSRLSLIESPV-----------NPDIGSI 60

Query: 61  GGGGSNPRRTFGSPISGGIGRNRFLYRSPVFNRENTAASSSRRNRSRGRNSVLPIWYPRT 120
           GG G   R  F +   G        +R P   REN    ++RR R  G   +LP WYPRT
Sbjct: 61  GGTGGLVRGNFTTWRPGNGRGGHTPFRLPQ-GRENMPIVTARRGRGGG---LLPSWYPRT 120

Query: 121 PLRDITAVVRAIERTRARLXXXXXXXXDNSPAPSDERALEYSVSVAGDHQEPSISLVTPK 180
           PLRDIT +VRAIER R              P       LE  V ++G+H+    S+VTP 
Sbjct: 121 PLRDITHIVRAIERRRGAGTGGDDGRVIEIPTHRQVGVLESPVPLSGEHK---CSMVTPG 180

Query: 181 PTVG----------KVPKIILGIANQNV-VGAETLTPQKKLLNSIDKXXXXXXXXXXXXX 240
           P+VG          KV K++L I  +     A  +TP+KKLLNSIDK             
Sbjct: 181 PSVGFKRSCPPSTAKVQKMLLDITKEIAEEEAGFITPEKKLLNSIDKVEKIVMAEIQKLK 240

Query: 241 XXXXXXXXXXXXXVRTLMSFR 250
                        VRTLM+ R
Sbjct: 241 STPQAKREEREKRVRTLMTMR 243

[Close]

BLAST of Cla97C04G068720 vs. TAIR10
Match: AT2G42260.1 (uv-b-insensitive 4)

HSP 1 Score: 152.5 bits (384), Expect = 3.4e-37
Identity = 108/261 (41.38%), Postives = 135/261 (51.72%), Query Frame = 0


Query: 1   MSEARDRLERQVDHAEVFARRRSEGI-LDEQEMNSHLIGTPIARATTTPTAQQRPTNPGP 60
           M EARDR+ERQVD+   F  RRS GI LDE     +L G+P+ R  +  T        G 
Sbjct: 1   MPEARDRIERQVDYPAAFLNRRSHGILLDEPATQHNLFGSPVQRVPSEATGGLGSIGQGS 60

Query: 61  -GGGGSNPRRTFGSPISGGIGRNRFLYRSPVFNRENTAASSSRRNRSRGRNSVLPIWYPR 120
             G G   R  FG   +GG  R +  +RSP   REN +   +RR R+R  NSVLP WYPR
Sbjct: 61  MTGRGGLVRGNFGIRRTGGGRRGQIQFRSPQ-GRENMSLGVTRRGRARASNSVLPSWYPR 120

Query: 121 TPLRDITAVVRAIERTRARLXXXXXXXXDNSPAPSDERALEYSVSVAGDHQEPSISLVTP 180
           TPLRDI+AVVRAIER RAR+        + +P P     L+  V ++G H E   S+VTP
Sbjct: 121 TPLRDISAVVRAIERRRARMGEGVGRDIE-TPTPQQLGVLDSLVPLSGAHLEHDYSMVTP 180

Query: 181 KPTVG----------KVPKIILGIANQNVVGAETLTPQKKLLNSIDKXXXXXXXXXXXXX 240
            P++G          KV +I+L I  +N    + LTP+KKLLNSIDK             
Sbjct: 181 GPSIGFKRPWPPSTAKVHQILLDITRENTGEEDALTPEKKLLNSIDKVEKVVMEEIQKMK 240

Query: 241 XXXXXXXXXXXXXVRTLMSFR 250
                        VRTLMS R
Sbjct: 241 STPSAKRAEREKRVRTLMSMR 259

[Close]

BLAST of Cla97C04G068720 vs. TAIR10
Match: AT3G57860.1 (UV-B-insensitive 4-like)

HSP 1 Score: 104.0 bits (258), Expect = 1.4e-22
Identity = 94/261 (36.02%), Postives = 118/261 (45.21%), Query Frame = 0


Query: 1   MSEARDRLERQVDHAEVFARRRSEGI-LDEQEMNSHLIGTPIARATTTPTAQQRPTNPGP 60
           M EARDR ER VD++ +FA RR  GI LDE +    LI +P+            P     
Sbjct: 1   MPEARDRTERPVDYSTIFANRRRHGILLDEPDSRLSLIESPV-----------NPDIGSI 60

Query: 61  GGGGSNPRRTFGSPISGGIGRNRFLYRSPVFNRENTAASSSRRNRSRGRNSVLPIWYPRT 120
           GG G   R  F +   G        +R P   REN    ++RR R  G   +LP WYPRT
Sbjct: 61  GGTGGLVRGNFTTWRPGNGRGGHTPFRLPQ-GRENMPIVTARRGRGGG---LLPSWYPRT 120

Query: 121 PLRDITAVVRAIERTRARLXXXXXXXXDNSPAPSDERALEYSVSVAGDHQEPSISLVTPK 180
           PLRDIT +VRAIER R              P       LE  V ++G+H+    S+VTP 
Sbjct: 121 PLRDITHIVRAIERRRGAGTGGDDGRVIEIPTHRQVGVLESPVPLSGEHK---CSMVTPG 180

Query: 181 PTVG----------KVPKIILGIANQNV-VGAETLTPQKKLLNSIDKXXXXXXXXXXXXX 240
           P+VG          KV K++L I  +     A  +TP+KKLLNSIDK             
Sbjct: 181 PSVGFKRSCPPSTAKVQKMLLDITKEIAEEEAGFITPEKKLLNSIDKVEKIVMAEIQKLK 240

Query: 241 XXXXXXXXXXXXXVRTLMSFR 250
                        VRTLM+ R
Sbjct: 241 STPQAKREEREKRVRTLMTMR 243

The following BLAST results are available for this feature:

BLAST of Cla97C04G068720 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004150162.1	2.0e-88	76.71	PREDICTED: protein POLYCHOME [Cucumis sativus]	[more]
KGN53824.1	2.0e-88	76.71	hypothetical protein Csa_4G152290 [Cucumis sativus]	[more]
XP_008460799.1	3.9e-76	70.28	PREDICTED: protein POLYCHOME [Cucumis melo]	[more]
XP_023543597.1	3.3e-75	72.69	protein POLYCHOME-like [Cucurbita pepo subsp. pepo]	[more]
XP_022151615.1	8.2e-74	73.24	protein POLYCHOME [Momordica charantia]	[more]

BLAST of Cla97C04G068720 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KY99\|A0A0A0KY99_CUCSA	1.3e-88	76.71	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G152290 PE=4 SV=1	[more]
tr\|A0A1S3CDA1\|A0A1S3CDA1_CUCME	2.6e-76	70.28	protein POLYCHOME OS=Cucumis melo OX=3656 GN=LOC103499559 PE=4 SV=1	[more]
tr\|A0A2I4DN34\|A0A2I4DN34_9ROSI	6.3e-38	45.66	protein POLYCHOME-like OS=Juglans regia OX=51240 GN=LOC108981745 PE=4 SV=1	[more]
tr\|A0A2N9HHY2\|A0A2N9HHY2_FAGSY	1.8e-37	46.42	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS39407 PE=4 SV=1	[more]
tr\|A0A2N9ISW9\|A0A2N9ISW9_FAGSY	3.1e-37	46.42	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS55834 PE=4 SV=1	[more]

BLAST of Cla97C04G068720 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O48533\|PYM_ARATH	6.1e-36	41.38	Protein POLYCHOME OS=Arabidopsis thaliana OX=3702 GN=PYM PE=1 SV=1	[more]
sp\|Q9M2R1\|GIG1_ARATH	2.5e-21	36.02	Protein GIGAS CELL1 OS=Arabidopsis thaliana OX=3702 GN=GIG1 PE=1 SV=1	[more]

BLAST of Cla97C04G068720 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G42260.1	3.4e-37	41.38	uv-b-insensitive 4	[more]
AT3G57860.1	1.4e-22	36.02	UV-B-insensitive 4-like	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0051783	regulation of nuclear division
GO:1904667	negative regulation of ubiquitin protein ligase activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **INTERPRO**
Term	Definition
IPR034590	POLYCHOME/GIG1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1904667	negative regulation of ubiquitin protein ligase activity
biological_process	GO:0051783	regulation of nuclear division
biological_process	GO:0008150	biological_process
biological_process	GO:0042023	DNA endoreduplication
biological_process	GO:0009960	endosperm development
biological_process	GO:0009561	megagametogenesis
biological_process	GO:1900426	positive regulation of defense response to bacterium
biological_process	GO:0010224	response to UV-B
biological_process	GO:0010091	trichome branching
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C04G068720.1	Cla97C04G068720.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 121..141
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 229..249
None	No IPR available	PANTHER	PTHR35119:SF1	PROTEIN GIGAS CELL1-RELATED	coord: 1..249
IPR034590	POLYCHOME/GIGAS CELL1	PANTHER	PTHR35119	FAMILY NOT NAMED	coord: 1..249

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C04G068720	Cla000743	Watermelon (97103) v1	wmwmbB297
Cla97C04G068720	Csa4G152290	Cucumber (Chinese Long) v2	cuwmbB302
Cla97C04G068720	MELO3C023180	Melon (DHL92) v3.5.1	mewmbB534
Cla97C04G068720	ClCG04G000340	Watermelon (Charleston Gray)	wcgwmbB200
Cla97C04G068720	CSPI04G10380	Wild cucumber (PI 183967)	cpiwmbB311
Cla97C04G068720	Cucsa.038040	Cucumber (Gy14) v1	cgywmbB013
Cla97C04G068720	CmaCh03G000790	Cucurbita maxima (Rimu)	cmawmbB685
Cla97C04G068720	CmoCh03G000800	Cucurbita moschata (Rifu)	cmowmbB658
Cla97C04G068720	Lsi01G018920	Bottle gourd (USVL1VR-Ls)	lsiwmbB133
Cla97C04G068720	CsGy4G010070	Cucumber (Gy14) v2	cgybwmbB286
Cla97C04G068720	MELO3C023180.2	Melon (DHL92) v3.6.1	medwmbB535
Cla97C04G068720	Carg22466	Silver-seed gourd	carwmbB0196
Cla97C04G068720	Carg12737	Silver-seed gourd	carwmbB0292
Cla97C04G068720	CsaV3_4G010540	Cucumber (Chinese Long) v3	cucwmbB311
Cla97C04G068720	Bhi03G002127	Wax gourd	wgowmbB436

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C04G068720	Cucumber (Gy14) v2	cgybwmbB283
Cla97C04G068720	Cucurbita maxima (Rimu)	cmawmbB899
Cla97C04G068720	Cucurbita moschata (Rifu)	cmowmbB869
Cla97C04G068720	Wild cucumber (PI 183967)	cpiwmbB308
Cla97C04G068720	Cucumber (Chinese Long) v3	cucwmbB308
Cla97C04G068720	Cucumber (Chinese Long) v2	cuwmbB301
Cla97C04G068720	Wax gourd	wgowmbB427