Cla97C03G050950 (gene) Watermelon (97103) v2

Overview
NameCla97C03G050950
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionU2 small nuclear ribonucleoprotein B'' 2-like
LocationCla97Chr03 : 165287 .. 168066 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTATCGGGGGATATACCGCCTAACCAGACCATATACATCAAGAATCTCAATGAGAAGGTCAAGAAAGAAGGTGACTCATTCTTAGCTTTTCGCTTAACCTTACTCTATTCCTTCCGTAAACGTCTTTTCTTCTGTTCGTTAAGTGTACAACTTAGTATAATTCAAGTGATCTCCGGCACATTTTATCTTTGTCATTTCGCCGTGGGCTCTCAAAATTCATGCTACTGTCGGTTTCCCCCGGGGGAAGGGGGGGGGGTTATTTTGGCGAAGGTCGGTTTGTTTTTGTTACATTATTTGATATTTCTGATGATGCCCAACTATCATAGTTGAAATTTTGTTTTTAGGGTGAAGGAGCTGCTAGCTTGAAATTTTAGTTTGGATTTGGAGACGGCTACTTGCTTTACCCGTTCCCGTAGCATTTGGGATTTTGCTTACTATTTTGGTTGCTTAGTGTTCAGTTTTTGACAATATTACATCACGTGTGGAGGGGAGGGGGTTATTTGAACCTACGTCCTTTTAGTGTTCAGATTTCGATGGTATACTAATTTTCTCCCCCTTGGACAGAGTTGAAGAGATCCCTTTATGCTTTGTTTTCTCAATATGGAAGGATCCTTGATGTTGTTGCCTTGAAGACACCGAGGCTTCGAGGGCAAGCATGGGTTGCATTTAGCGAAGTGACTGCAGCTAGCAATGCTGTGCGGCAGATGCAAAATTTCCCATTCTATGAAAAACCTATGGTTGGTCTTTAGCTGATCACATTTTCTGAACTTGCTTTTCATAGTCTTTTCATGGCCTTTCATCTATGGATTTTTCTAGTGCACTTTGAATTTTGTTGGGTAACTGTGGACAGTTCGCTTGTCAACGGGATTGGATCCTAATTGTGCTTCAATGAGTGTTATGTGGAGAGCGTCAAGTGAATATCTATACACAATCACACTCAATTATGCTCAATATTGTGCCAATTTAGCTGCTTCGCATGTCCGAAATAACGTCTTAATTTTGAGTAATTTCAATGGATAGAACTTTTAGGGGTAATAATTGTGTGAATACCAACATTTTTAAAGAATTGCAAATATAACAAAATTTATCAGTGATAGACTCTATCGTTGATAGACTGTTACCAACGATATGGGCTATCACTAATAGACTCTGAGAGTTGGATTTAAAATTTCCTATATCTGCAAATTTTTTTAAATTGTGTATATTTGCTTATACTTTGGACCTGATTTCTATATTTGGAACTGCCTCCTTAATTTTATTGGATATGTTGGTTTGTATATTGGTTATGTGCCTGATTTGAGCATTTTGAGATCTTTCTTTGTAACTCCAGTATATCGGACATCTCTTTTTTCAATGAATGTCATCTGTCATGAATTACAAAGCAGTGCTTAGAATGTTGTTGCCATCAGATCTTCGGTCTTTATTGTAACTTGGACAAAGGGAGTTCATTTCTCCTTGTTCTAATGTGGGTATAATAAAGGGCCTAGAGGGAATAAGTTCAATCCATGATAGGGCACCTACTTGGGGTAATACCCTACGAGTTTTTTTTTGACATGTTGTAAGGTCAAATGGGTTATAGTCGAGATGTACACAAACTGACCCAAATACTTGCACATATCAAAAAAAGGAAAAAACAAACATGTCTGGAGATGTAACCATGATTCTGTTAGGAAGAAACAAGTTTACTATTATTTTTTTCCCTTTTAAATTTCACTCTTTTTTTTTTTGTTTCATCTTGGAACTTTGTGTACCATCTTCATCATACAACTTATTCTGATGTTTAATATGATGATGCCTTTCTGTTGACCATCTCAAAAATATAAAGTTGACTTTTGTTGTTTCTTTTGCAGAGAATTCAATATGCCAAAACCAAATCAGATTGTGTTGCTAAAGCTGACGGAAGCTTTGTGCCAAGGGAGAAGAAAAAGAAGCAAGAGGAAAAAGGTGATTGTAACTGTATATTATCTTTAAGTTAGTAGATCGACAGTATATTTTTACTATGGTTTTTTGAAATGGTTCACATAACCTCTCATTTTCTTATTGCATTGCTTTTGAAATATCTCAAGGGTTTTAAACTGGTTTATGTTCCTGATTATCTTATTATTTGCTTATCCAGCTGAAAAAAAGCGACGTGCTGAAGAAGCACACCAATCTGCGATGCCCAACGGAACAACTGCTGAGAATGGAGGTTCAAATGTAAGTTTATCTCCACCCTTATTTTATTTTTTGTGATGTAAAATGTTTGTTTTCCTTCTTCATATGAGCTGTATCGTATTAATTGTTTTCACGGGAAGTGGTCCCAAACATAAACTGTGTGAGTCTTGTTTGGATGGCGTGGTTCTCTGGTTAATTGTTTGTTTCTTCACATCTGTTAGAAAGTCATTGATGTCTATTCCAATTAGATTTCACCTTAGTGCCCCTTAGATCAGGCAATGTTAACCAACACTTTTCCATAATTATTTTTGCTAAGAAAGCCTCTTCGTTGTGTGTCATTTTTGCAGGCCACATTCCGTCATGCAAATCCAAGTGCTGCAGAAGCTACTCCAAACAACATACTATTTATTGAGAATTTGCCACATGAAACGTCTAGTATGATGTTGCAAGTCCTCTTCCAACAATATCCTGGATTCAGGGAAGTCCGGATGATTGAAGCAAAGCCGGGTATTGCTTTTGTTGAGTTTGAAGACGATGTTCAATCCTCCATGGCGATGCAGGCTCTTCAAGGCTTTAAAATTGACCCCCAACATCCCATGGCTATCTCTTTTGCAAAGAAGTAA

mRNA sequence

ATGTTATCGGGGGATATACCGCCTAACCAGACCATATACATCAAGAATCTCAATGAGAAGGTCAAGAAAGAAGAGTTGAAGAGATCCCTTTATGCTTTGTTTTCTCAATATGGAAGGATCCTTGATGTTGTTGCCTTGAAGACACCGAGGCTTCGAGGGCAAGCATGGGTTGCATTTAGCGAAGTGACTGCAGCTAGCAATGCTGTGCGGCAGATGCAAAATTTCCCATTCTATGAAAAACCTATGAGAATTCAATATGCCAAAACCAAATCAGATTGTGTTGCTAAAGCTGACGGAAGCTTTGTGCCAAGGGAGAAGAAAAAGAAGCAAGAGGAAAAAGCTGAAAAAAAGCGACGTGCTGAAGAAGCACACCAATCTGCGATGCCCAACGGAACAACTGCTGAGAATGGAGGTTCAAATGCCACATTCCGTCATGCAAATCCAAGTGCTGCAGAAGCTACTCCAAACAACATACTATTTATTGAGAATTTGCCACATGAAACGTCTAGTATGATGTTGCAAGTCCTCTTCCAACAATATCCTGGATTCAGGGAAGTCCGGATGATTGAAGCAAAGCCGGGTATTGCTTTTGTTGAGTTTGAAGACGATGTTCAATCCTCCATGGCGATGCAGGCTCTTCAAGGCTTTAAAATTGACCCCCAACATCCCATGGCTATCTCTTTTGCAAAGAAGTAA

Coding sequence (CDS)

ATGTTATCGGGGGATATACCGCCTAACCAGACCATATACATCAAGAATCTCAATGAGAAGGTCAAGAAAGAAGAGTTGAAGAGATCCCTTTATGCTTTGTTTTCTCAATATGGAAGGATCCTTGATGTTGTTGCCTTGAAGACACCGAGGCTTCGAGGGCAAGCATGGGTTGCATTTAGCGAAGTGACTGCAGCTAGCAATGCTGTGCGGCAGATGCAAAATTTCCCATTCTATGAAAAACCTATGAGAATTCAATATGCCAAAACCAAATCAGATTGTGTTGCTAAAGCTGACGGAAGCTTTGTGCCAAGGGAGAAGAAAAAGAAGCAAGAGGAAAAAGCTGAAAAAAAGCGACGTGCTGAAGAAGCACACCAATCTGCGATGCCCAACGGAACAACTGCTGAGAATGGAGGTTCAAATGCCACATTCCGTCATGCAAATCCAAGTGCTGCAGAAGCTACTCCAAACAACATACTATTTATTGAGAATTTGCCACATGAAACGTCTAGTATGATGTTGCAAGTCCTCTTCCAACAATATCCTGGATTCAGGGAAGTCCGGATGATTGAAGCAAAGCCGGGTATTGCTTTTGTTGAGTTTGAAGACGATGTTCAATCCTCCATGGCGATGCAGGCTCTTCAAGGCTTTAAAATTGACCCCCAACATCCCATGGCTATCTCTTTTGCAAAGAAGTAA

Protein sequence

MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAEKKRRAEEAHQSAMPNGTTAENGGSNATFRHANPSAAEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Homology
[Close]
BLAST of Cla97C03G050950 vs. NCBI nr
Match: XP_022949507.1 (U2 small nuclear ribonucleoprotein B'' 2-like [Cucurbita moschata] >XP_022998346.1 U2 small nuclear ribonucleoprotein B'' 2-like [Cucurbita maxima])

HSP 1 Score: 399.8 bits (1026), Expect = 6.2e-108
Identity = 223/231 (96.54%), Postives = 224/231 (96.97%), Query Frame = 0 

Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML GDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREXXXXXXXXXXXXXXX 120
           EVTAASNAVRQMQNFPFY+KPMRIQYAKTKSDCVAKADGSFVPREXXXXXXXXXXXXXXX
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXMPNGTTAENGGSNATFRHANPSAAEATPNNILFIENLPHETSSMMLQVLFQQY 180
           XXX    MPNG TAENGGSNATFRHANPSA EATPNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 XXXHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]
BLAST of Cla97C03G050950 vs. NCBI nr
Match: XP_023525708.1 (U2 small nuclear ribonucleoprotein B'' 2-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023525709.1 U2 small nuclear ribonucleoprotein B'' 2-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 399.8 bits (1026), Expect = 6.2e-108
Identity = 221/231 (95.67%), Postives = 222/231 (96.10%), Query Frame = 0 

Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML GDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREXXXXXXXXXXXXXXX 120
           EVTAASNAVRQMQNFPFY+KPMRIQYAKTKSDCVAKADGSFVPREXXXXXXXXXXXXXXX
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXMPNGTTAENGGSNATFRHANPSAAEATPNNILFIENLPHETSSMMLQVLFQQY 180
           X      MPNG TAENGGSNATFRHANPSA EATPNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 XETHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]
BLAST of Cla97C03G050950 vs. NCBI nr
Match: XP_023519411.1 (U2 small nuclear ribonucleoprotein B'' 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 399.1 bits (1024), Expect = 1.1e-107
Identity = 203/231 (87.88%), Postives = 207/231 (89.61%), Query Frame = 0 

Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           M SGDIPPNQ+IYIKNLNE+VKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MYSGDIPPNQSIYIKNLNEEVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREXXXXXXXXXXXXXXX 120
           EVTAASNAVRQMQNFPFY+KPMRIQYAKTKSDC+AKADGSFVPRE               
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCIAKADGSFVPREKKKKLEEKAERKQRT 120

Query: 121 XXXXXXXMPNGTTAENGGSNATFRHANPSAAEATPNNILFIENLPHETSSMMLQVLFQQY 180
                  MPNGTTAENGGSNATFRHANPS AEATPNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 EDAHRSTMPNGTTAENGGSNATFRHANPSTAEATPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]
BLAST of Cla97C03G050950 vs. NCBI nr
Match: XP_022964939.1 (U2 small nuclear ribonucleoprotein B'' 2-like [Cucurbita moschata])

HSP 1 Score: 397.9 bits (1021), Expect = 2.4e-107
Identity = 202/231 (87.45%), Postives = 207/231 (89.61%), Query Frame = 0 

Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLSGDIPPNQ+IYIKNLNE+VKKEELKRSLYALFS YGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLSGDIPPNQSIYIKNLNEEVKKEELKRSLYALFSHYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREXXXXXXXXXXXXXXX 120
           EVTAASNAVRQMQNFPFY+KPMRIQYAKTKSDC+AKADGSFVPRE               
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCIAKADGSFVPREKKKKLVEKAERKQRT 120

Query: 121 XXXXXXXMPNGTTAENGGSNATFRHANPSAAEATPNNILFIENLPHETSSMMLQVLFQQY 180
                  MPNGTTAENGGSNATFRHANPS AEATPNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 EDAHQSSMPNGTTAENGGSNATFRHANPSTAEATPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           PGFREVRMIE+KPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIESKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]
BLAST of Cla97C03G050950 vs. NCBI nr
Match: XP_022970660.1 (U2 small nuclear ribonucleoprotein B'' 2-like [Cucurbita maxima])

HSP 1 Score: 392.5 bits (1007), Expect = 9.9e-106
Identity = 199/231 (86.15%), Postives = 205/231 (88.74%), Query Frame = 0 

Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLSGDIPPNQ+IYIKNLNE+VKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLSGDIPPNQSIYIKNLNEEVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREXXXXXXXXXXXXXXX 120
           EVTAASNAVRQM+NFPFY+KPMRIQYAKTKSDC+AK DGSFVPRE               
Sbjct: 61  EVTAASNAVRQMKNFPFYDKPMRIQYAKTKSDCIAKTDGSFVPREKKKKLEEKAERKQRT 120

Query: 121 XXXXXXXMPNGTTAENGGSNATFRHANPSAAEATPNNILFIENLPHETSSMMLQVLFQQY 180
                  MPNGTTAE GGSNATFRHANPS AEATPNNILFIENLPHETSS+MLQVLFQQY
Sbjct: 121 EDAHQSAMPNGTTAETGGSNATFRHANPSTAEATPNNILFIENLPHETSSIMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           PGFREVRMIE KPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEVKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]
BLAST of Cla97C03G050950 vs. TrEMBL
Match: tr|A0A1S3C564|A0A1S3C564_CUCME (U2 small nuclear ribonucleoprotein B'' 2-like OS=Cucumis melo OX=3656 GN=LOC103497024 PE=4 SV=1)

HSP 1 Score: 376.7 bits (966), Expect = 3.7e-101
Identity = 218/231 (94.37%), Postives = 219/231 (94.81%), Query Frame = 0 

Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREXXXXXXXXXXXXXXX 120
           EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADG+FVPREXXXXXXXXXXXXXXX
Sbjct: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGTFVPREXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXMPNGTTAENGGSNATFRHANPSAAEATPNNILFIENLPHETSSMMLQVLFQQY 180
           XXXXXXX           SNATFRHANPSA EATPNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 XXXXXXXXXXXXXXXXXXSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]
BLAST of Cla97C03G050950 vs. TrEMBL
Match: tr|A0A0A0LPT7|A0A0A0LPT7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G025950 PE=4 SV=1)

HSP 1 Score: 375.2 bits (962), Expect = 1.1e-100
Identity = 217/231 (93.94%), Postives = 218/231 (94.37%), Query Frame = 0 

Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREXXXXXXXXXXXXXXX 120
           EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDC+AKADGSFVPR XXXXXXXXXXXXXXX
Sbjct: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPRXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXMPNGTTAENGGSNATFRHANPSAAEATPNNILFIENLPHETSSMMLQVLFQQY 180
           XXXXXXX           SNATFRHANPSA EATPNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 XXXXXXXXXXXXXXXXXXSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]
BLAST of Cla97C03G050950 vs. TrEMBL
Match: tr|A0A2P5CT04|A0A2P5CT04_PARAD (U1 small nuclear ribonucleoprotein A/U2 small nuclear ribonucleoprotein B OS=Parasponia andersonii OX=3476 GN=PanWU01x14_127070 PE=4 SV=1)

HSP 1 Score: 351.3 bits (900), Expect = 1.7e-93
Identity = 204/232 (87.93%), Postives = 217/232 (93.53%), Query Frame = 0 

Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLSGDIPPNQTIYIKNLNEK+KKEELKRSLYALFSQYGRILDVVALKTP+LRGQAW+AFS
Sbjct: 1   MLSGDIPPNQTIYIKNLNEKIKKEELKRSLYALFSQYGRILDVVALKTPKLRGQAWIAFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREXXXXXXXXXXXXXXX 120
           EV AASNAVRQMQNFPFY+KPMRIQYAKTKSDCVAKA+GS+VPREXXXXXXXXXXXXXXX
Sbjct: 61  EVPAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKAEGSYVPREXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXMPNGTTAENGGSNATFRHANPSAAE-ATPNNILFIENLPHETSSMMLQVLFQQ 180
           XXXXXXX   GT AENG + A FR  N SA E A PNNILFIENLPHET+SMML++LF+Q
Sbjct: 121 XXXXXXXXXXGTRAENGTTPAPFRQGNASAQEAAAPNNILFIENLPHETTSMMLELLFRQ 180

Query: 181 YPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           YPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKI PQ+PMAI+FAKK
Sbjct: 181 YPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 232

[Close]
BLAST of Cla97C03G050950 vs. TrEMBL
Match: tr|A0A2P5AB59|A0A2P5AB59_9ROSA (U1 small nuclear ribonucleoprotein A/U2 small nuclear ribonucleoprotein B OS=Trema orientalis OX=63057 GN=TorRG33x02_354460 PE=4 SV=1)

HSP 1 Score: 349.7 bits (896), Expect = 4.9e-93
Identity = 204/232 (87.93%), Postives = 216/232 (93.10%), Query Frame = 0 

Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLSGDIPPNQTIYIKNLNEK+KKEELKRSLYALFSQYGRILDVVALKT +LRGQAW+AFS
Sbjct: 1   MLSGDIPPNQTIYIKNLNEKIKKEELKRSLYALFSQYGRILDVVALKTSKLRGQAWIAFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREXXXXXXXXXXXXXXX 120
           EV AASNAVRQMQNFPFY+KPMRIQYAKTKSDCVAKA+GS+VPREXXXXXXXXXXXXXXX
Sbjct: 61  EVPAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKAEGSYVPREXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXMPNGTTAENGGSNATFRHANPSAAE-ATPNNILFIENLPHETSSMMLQVLFQQ 180
           XXXXXXX   GT AENG + A FR  N SA E A PNNILFIENLPHET+SMML++LFQQ
Sbjct: 121 XXXXXXXXXXGTRAENGTTPAPFRQGNASAQEAAAPNNILFIENLPHETTSMMLELLFQQ 180

Query: 181 YPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           YPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKI PQ+PMAI+FAKK
Sbjct: 181 YPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 232

[Close]
BLAST of Cla97C03G050950 vs. TrEMBL
Match: tr|D7SJN7|D7SJN7_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0004g07530 PE=4 SV=1)

HSP 1 Score: 345.1 bits (884), Expect = 1.2e-91
Identity = 202/234 (86.32%), Postives = 214/234 (91.45%), Query Frame = 0 

Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLSGDIPPNQ+IYIKNLNEKVKKEELKRSLY LFSQYGRILDVVALKTP+LRGQAWV FS
Sbjct: 1   MLSGDIPPNQSIYIKNLNEKVKKEELKRSLYCLFSQYGRILDVVALKTPKLRGQAWVVFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREXXXXXXXXXXXXXXX 120
           EVTAASNAVRQMQNFPFY+KPMR+QYAKTKSDCVAKADG+FVPREXXXXXXXXXXXXXXX
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRVQYAKTKSDCVAKADGTFVPREXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXMPNGTTAE-NGGSNATFRHANPSA--AEATPNNILFIENLPHETSSMMLQVLF 180
           XXXXXXX  NG  AE NGG    FR  N  A   EA PNNILFI+NLPH+T+SMMLQVLF
Sbjct: 121 XXXXXXXNANGRNAETNGGPTPPFRQGNQGAREPEAAPNNILFIQNLPHQTTSMMLQVLF 180

Query: 181 QQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           QQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAM+ALQGFKI PQ+PMAI++AKK
Sbjct: 181 QQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMEALQGFKITPQNPMAIAYAKK 234

[Close]
BLAST of Cla97C03G050950 vs. Swiss-Prot
Match: sp|Q8H1S6|RU2B2_ARATH (U2 small nuclear ribonucleoprotein B'' 2 OS=Arabidopsis thaliana OX=3702 GN=At1g06960 PE=1 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 2.9e-85
Identity = 162/232 (69.83%), Postives = 186/232 (80.17%), Query Frame = 0 

Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML+ DIPPNQ+IYIK++NEK+KKEELKRSLY LFSQ+GR+LDVVALKTP+LRGQAWV F+
Sbjct: 1   MLTADIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFT 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREXXXXXXXXXXXXXXX 120
           EVTAASNAVRQMQNFPFY+KPMRIQYAK+KSD V KA+GSFVP+E               
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHA 120

Query: 121 XXXXXXXMPNGTTAENGGSNATFRHANPSAAEA-TPNNILFIENLPHETSSMMLQVLFQQ 180
                  MPNG T +NG     F+   PS  +   PNNILFI NLP ET+SMMLQ+LF+Q
Sbjct: 121 EETQQPSMPNGATTQNGMPVPPFQ---PSGQDTMPPNNILFIHNLPIETNSMMLQLLFEQ 180

Query: 181 YPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           YPGF+E+RMIEAKPGIAFVE+EDDVQSSMAMQALQGFKI PQ+PM +SFAKK
Sbjct: 181 YPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 229

[Close]
BLAST of Cla97C03G050950 vs. Swiss-Prot
Match: sp|O22922|RU2B1_ARATH (U2 small nuclear ribonucleoprotein B'' OS=Arabidopsis thaliana OX=3702 GN=U2B'' PE=1 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 8.3e-80
Identity = 169/232 (72.84%), Postives = 195/232 (84.05%), Query Frame = 0 

Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML+ DIPPNQ+IYI+NLNE++KKEELKRSLY LFSQ+GRILDVVALKTP+LRGQAWV FS
Sbjct: 1   MLTADIPPNQSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREXXXXXXXXXXXXXXX 120
           EVTAA +AVRQMQNFPFY+KPMR+QYAK KSDC+AKA+G+FVP++    XXXXXXXXXXX
Sbjct: 61  EVTAAGHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKXXXXXXXXXXX 120

Query: 121 XXXXXXXMPNGTTAENGGSNATFRHANPSAAEA-TPNNILFIENLPHETSSMMLQVLFQQ 180
           XXXXXXX                    PS  E   PNNILFI+NLPHET+SMMLQ+LF+Q
Sbjct: 121 XXXXXXXXXXXXXXXXXXXGVPAPSFQPSGQETMPPNNILFIQNLPHETTSMMLQLLFEQ 180

Query: 181 YPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           YPGF+E+RMI+AKPGIAFVE+EDDVQ+S+AMQ LQGFKI PQ+PM ISFAKK
Sbjct: 181 YPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQGFKITPQNPMVISFAKK 232

[Close]
BLAST of Cla97C03G050950 vs. Swiss-Prot
Match: sp|B8AM21|RU2B_ORYSI (U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. indica OX=39946 GN=OsI_11177 PE=3 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 6.2e-75
Identity = 173/232 (74.57%), Postives = 190/232 (81.90%), Query Frame = 0 

Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLSGDIPPNQT+Y++NLNEKVKKEELKRSLYAL SQYGRILDVVALKTP+LRGQAWV FS
Sbjct: 1   MLSGDIPPNQTVYLRNLNEKVKKEELKRSLYALCSQYGRILDVVALKTPKLRGQAWVVFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREXXXXXXXXXXXXXXX 120
           E+TAA+NA R +Q F FY K MR+QYAKTKSDC+A  DGS     XXXXXXXXXXXXXXX
Sbjct: 61  EITAATNAFRGLQEFDFYGKRMRVQYAKTKSDCLATEDGSTXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXMPNGTTAENG-GSNATFRHANPSAAEATPNNILFIENLPHETSSMMLQVLFQQ 180
           XXXXXXX        NG G  A+          A PNNILFI+NLP ET+SMMLQ+LFQQ
Sbjct: 121 XXXXXXXXXXXXXXSNGTGYQASRLGKTSQEPPAPPNNILFIQNLPAETTSMMLQILFQQ 180

Query: 181 YPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           YPGFREVRMIEAKPGIAFVE+EDD QS +AMQALQGFKI P +PMAIS+AKK
Sbjct: 181 YPGFREVRMIEAKPGIAFVEYEDDSQSMVAMQALQGFKITPYNPMAISYAKK 232

[Close]
BLAST of Cla97C03G050950 vs. Swiss-Prot
Match: sp|Q10MR0|RU2B_ORYSJ (U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0298800 PE=2 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 1.4e-74
Identity = 172/232 (74.14%), Postives = 190/232 (81.90%), Query Frame = 0 

Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLSGDIPPNQT+Y++NLNEKVKKEELKRSLYAL SQYGRILDVVALKTP+LRGQAWV FS
Sbjct: 1   MLSGDIPPNQTVYLRNLNEKVKKEELKRSLYALCSQYGRILDVVALKTPKLRGQAWVVFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREXXXXXXXXXXXXXXX 120
           E+TAA+NA R +Q F FY K MR+QYAKT+SDC+A  DGS     XXXXXXXXXXXXXXX
Sbjct: 61  EITAATNAFRGLQEFDFYGKRMRVQYAKTRSDCLATEDGSTXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXMPNGTTAENG-GSNATFRHANPSAAEATPNNILFIENLPHETSSMMLQVLFQQ 180
           XXXXXXX        NG G  A+          A PNNILFI+NLP ET+SMMLQ+LFQQ
Sbjct: 121 XXXXXXXXXXXXXXSNGTGYQASRLGKTSQEPPAPPNNILFIQNLPAETTSMMLQILFQQ 180

Query: 181 YPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           YPGFREVRMIEAKPGIAFVE+EDD QS +AMQALQGFKI P +PMAIS+AKK
Sbjct: 181 YPGFREVRMIEAKPGIAFVEYEDDSQSMVAMQALQGFKITPYNPMAISYAKK 232

[Close]
BLAST of Cla97C03G050950 vs. Swiss-Prot
Match: sp|A2Y0J7|RU1A_ORYSI (U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. indica OX=39946 GN=OsI_18512 PE=3 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 4.3e-60
Identity = 141/234 (60.26%), Postives = 170/234 (72.65%), Query Frame = 0 

Query: 7   PPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAAS 66
           PPN TIYI NLNEK+K EELK+SL A+FSQ+G+ILDV+A KT + +GQAWV F +V +A+
Sbjct: 20  PPNVTIYINNLNEKIKLEELKKSLRAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASAT 79

Query: 67  NAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREXXXXXXXXXXXXXXXXXXXXX 126
            A++ MQ+FPF+ KPMRIQYAKTKSD +AKADG+FVPRE   XXXXXXXXXXXXXX    
Sbjct: 80  EALKSMQDFPFHNKPMRIQYAKTKSDIIAKADGTFVPRERRKXXXXXXXXXXXXXXHHDV 139

Query: 127 XMPN-GTTAENGGSNATFRHANPSAAE--------ATPNNILFIENLPHETSSMMLQVLF 186
                G  A  G   A      P A            PNNILF++NLPHET+ MMLQ+LF
Sbjct: 140 SQVGLGVNAYPGVYGAPPLSQLPFAGAQKVMMPEIIVPNNILFVQNLPHETTPMMLQMLF 199

Query: 187 QQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
            QYPGF+EVRM+EAKPGIAFVE+ D+ Q++ AM  LQGFKI   + M IS+AKK
Sbjct: 200 CQYPGFKEVRMVEAKPGIAFVEYGDEGQATAAMNHLQGFKITKDNQMLISYAKK 253

[Close]
BLAST of Cla97C03G050950 vs. TAIR10
Match: AT1G06960.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 316.2 bits (809), Expect = 1.6e-86
Identity = 162/232 (69.83%), Postives = 186/232 (80.17%), Query Frame = 0 

Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML+ DIPPNQ+IYIK++NEK+KKEELKRSLY LFSQ+GR+LDVVALKTP+LRGQAWV F+
Sbjct: 1   MLTADIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFT 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREXXXXXXXXXXXXXXX 120
           EVTAASNAVRQMQNFPFY+KPMRIQYAK+KSD V KA+GSFVP+E               
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHA 120

Query: 121 XXXXXXXMPNGTTAENGGSNATFRHANPSAAEA-TPNNILFIENLPHETSSMMLQVLFQQ 180
                  MPNG T +NG     F+   PS  +   PNNILFI NLP ET+SMMLQ+LF+Q
Sbjct: 121 EETQQPSMPNGATTQNGMPVPPFQ---PSGQDTMPPNNILFIHNLPIETNSMMLQLLFEQ 180

Query: 181 YPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           YPGF+E+RMIEAKPGIAFVE+EDDVQSSMAMQALQGFKI PQ+PM +SFAKK
Sbjct: 181 YPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 229

[Close]
BLAST of Cla97C03G050950 vs. TAIR10
Match: AT2G30260.1 (U2 small nuclear ribonucleoprotein B)

HSP 1 Score: 298.1 bits (762), Expect = 4.6e-81
Identity = 169/232 (72.84%), Postives = 195/232 (84.05%), Query Frame = 0 

Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML+ DIPPNQ+IYI+NLNE++KKEELKRSLY LFSQ+GRILDVVALKTP+LRGQAWV FS
Sbjct: 1   MLTADIPPNQSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREXXXXXXXXXXXXXXX 120
           EVTAA +AVRQMQNFPFY+KPMR+QYAK KSDC+AKA+G+FVP++    XXXXXXXXXXX
Sbjct: 61  EVTAAGHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKXXXXXXXXXXX 120

Query: 121 XXXXXXXMPNGTTAENGGSNATFRHANPSAAEA-TPNNILFIENLPHETSSMMLQVLFQQ 180
           XXXXXXX                    PS  E   PNNILFI+NLPHET+SMMLQ+LF+Q
Sbjct: 121 XXXXXXXXXXXXXXXXXXXGVPAPSFQPSGQETMPPNNILFIQNLPHETTSMMLQLLFEQ 180

Query: 181 YPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           YPGF+E+RMI+AKPGIAFVE+EDDVQ+S+AMQ LQGFKI PQ+PM ISFAKK
Sbjct: 181 YPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQGFKITPQNPMVISFAKK 232

[Close]
BLAST of Cla97C03G050950 vs. TAIR10
Match: AT2G47580.1 (spliceosomal protein U1A)

HSP 1 Score: 229.6 bits (584), Expect = 2.0e-60
Identity = 149/239 (62.34%), Postives = 180/239 (75.31%), Query Frame = 0 

Query: 5   DIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTA 64
           ++ PNQTIYI NLNEKVK +ELK+SL A+FSQ+G+IL+++A KT + +GQAWV F    +
Sbjct: 13  EVSPNQTIYINNLNEKVKLDELKKSLNAVFSQFGKILEILAFKTFKHKGQAWVVFDNTES 72

Query: 65  ASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREXXXXXXXXXXXXXXXXXXX 124
           AS A+ +M NFPFY+K MRIQYAKTKSD VAKADG+FVPREXXXXXXXXXXXXXXXXXXX
Sbjct: 73  ASTAIAKMNNFPFYDKEMRIQYAKTKSDVVAKADGTFVPREXXXXXXXXXXXXXXXXXXX 132

Query: 125 XXXM---------PNGTTAENGGSNATF---RHANPSAAEATPNNILFIENLPHETSSMM 184
           XX           P    A    S   +      N   A A PNNILF++NLPHET+ M+
Sbjct: 133 XXTQMGMPMNSAYPGVYGAAPPLSQVPYPGGMKPNMPEAPAPPNNILFVQNLPHETTPMV 192

Query: 185 LQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           LQ+LF QY GF+EVRMIEAKPGIAFVEF D++QS++AMQ LQGFKI  Q+ M I++AKK
Sbjct: 193 LQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAMQGLQGFKIQ-QNQMLITYAKK 250

[Close]
BLAST of Cla97C03G050950 vs. TAIR10
Match: AT2G23350.1 (poly(A) binding protein 4)

HSP 1 Score: 45.4 bits (106), Expect = 5.4e-05
Identity = 27/92 (29.35%), Postives = 47/92 (51.09%), Query Frame = 0 

Query: 12  IYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTP--RLRGQAWVAFSEVTAASNAV 71
           +Y+KNL++ V  E+L+     LF+++G I     ++ P    +G  +VAFS  + AS  +
Sbjct: 330 LYVKNLDDTVTDEKLRE----LFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVL 389

Query: 72  RQMQNFPFYEKPMRIQYAKTKSDCVAKADGSF 102
            +M       KP+ +  A+ K +  AK    F
Sbjct: 390 NEMNGKMVGGKPLYVALAQRKEERRAKLQAQF 417

[Close]
BLAST of Cla97C03G050950 vs. TAIR10
Match: AT3G61860.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 41.6 bits (96), Expect = 7.8e-04
Identity = 27/79 (34.18%), Postives = 49/79 (62.03%), Query Frame = 0 

Query: 12 IYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQ 71
          +++ N   + ++ +L+R    LF +YGR+ D V +K+    G A+V F +   A +A+R+
Sbjct: 4  VFVGNFEYETRQSDLER----LFDKYGRV-DRVDMKS----GYAFVYFEDERDAEDAIRK 63

Query: 72 MQNFPF-YEK-PMRIQYAK 89
          + NFPF YEK  + +++AK
Sbjct: 64 LDNFPFGYEKRRLSVEWAK 73

The following BLAST results are available for this feature:
BLAST of Cla97C03G050950 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022949507.16.2e-10896.54U2 small nuclear ribonucleoprotein B'' 2-like [Cucurbita moschata] >XP_022998346... [more]
XP_023525708.16.2e-10895.67U2 small nuclear ribonucleoprotein B'' 2-like isoform X1 [Cucurbita pepo subsp. ... [more]
XP_023519411.11.1e-10787.88U2 small nuclear ribonucleoprotein B'' 2-like [Cucurbita pepo subsp. pepo][more]
XP_022964939.12.4e-10787.45U2 small nuclear ribonucleoprotein B'' 2-like [Cucurbita moschata][more]
XP_022970660.19.9e-10686.15U2 small nuclear ribonucleoprotein B'' 2-like [Cucurbita maxima][more]
BLAST of Cla97C03G050950 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3C564|A0A1S3C564_CUCME3.7e-10194.37U2 small nuclear ribonucleoprotein B'' 2-like OS=Cucumis melo OX=3656 GN=LOC1034... [more]
tr|A0A0A0LPT7|A0A0A0LPT7_CUCSA1.1e-10093.94Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G025950 PE=4 SV=1[more]
tr|A0A2P5CT04|A0A2P5CT04_PARAD1.7e-9387.93U1 small nuclear ribonucleoprotein A/U2 small nuclear ribonucleoprotein B OS=Par... [more]
tr|A0A2P5AB59|A0A2P5AB59_9ROSA4.9e-9387.93U1 small nuclear ribonucleoprotein A/U2 small nuclear ribonucleoprotein B OS=Tre... [more]
tr|D7SJN7|D7SJN7_VITVI1.2e-9186.32Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0004g07530 PE=4 SV=... [more]
BLAST of Cla97C03G050950 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q8H1S6|RU2B2_ARATH2.9e-8569.83U2 small nuclear ribonucleoprotein B'' 2 OS=Arabidopsis thaliana OX=3702 GN=At1g... [more]
sp|O22922|RU2B1_ARATH8.3e-8072.84U2 small nuclear ribonucleoprotein B'' OS=Arabidopsis thaliana OX=3702 GN=U2B'' ... [more]
sp|B8AM21|RU2B_ORYSI6.2e-7574.57U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. indica OX=39946 GN... [more]
sp|Q10MR0|RU2B_ORYSJ1.4e-7474.14U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. japonica OX=39947 ... [more]
sp|A2Y0J7|RU1A_ORYSI4.3e-6060.26U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. indica OX=39946 GN=O... [more]
BLAST of Cla97C03G050950 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G06960.11.6e-8669.83RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT2G30260.14.6e-8172.84U2 small nuclear ribonucleoprotein B[more]
AT2G47580.12.0e-6062.34spliceosomal protein U1A[more]
AT2G23350.15.4e-0529.35poly(A) binding protein 4[more]
AT3G61860.17.8e-0434.18RNA-binding (RRM/RBD/RNP motifs) family protein[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0008150 biological_process
cellular_component GO:0030529 intracellular ribonucleoprotein complex
cellular_component GO:0019013 viral nucleocapsid
cellular_component GO:0005685 U1 snRNP
cellular_component GO:0005686 U2 snRNP
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0017069 snRNA binding
molecular_function GO:0035614 snRNA stem-loop binding
molecular_function GO:0030619 U1 snRNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C03G050950.1Cla97C03G050950.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 104..126
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 126..146
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 98..146
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 99..124
NoneNo IPR availablePANTHERPTHR10501:SF32U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B''-RELATEDcoord: 7..231
NoneNo IPR availablePANTHERPTHR10501U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN Bcoord: 7..231
NoneNo IPR availableCDDcd12246RRM1_U1A_likecoord: 11..88
e-value: 2.16467E-49
score: 157.69
NoneNo IPR availableCDDcd12247RRM2_U1A_likecoord: 155..227
e-value: 4.73197E-37
score: 125.374
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 11..85
e-value: 2.5E-12
score: 57.0
coord: 158..227
e-value: 3.6E-10
score: 49.8
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 159..219
e-value: 1.7E-12
score: 46.8
coord: 12..82
e-value: 4.1E-9
score: 36.0
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 10..89
score: 14.215
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 157..231
score: 13.294
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 150..231
e-value: 3.7E-22
score: 80.1
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 4..123
e-value: 1.2E-29
score: 104.5
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 8..99
coord: 154..221