CsaV3_1G004710 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G004710
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionU2 small nuclear ribonucleoprotein B
Locationchr1 : 2988113 .. 2991904 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGAAAGGTCGTGGACACCAAAACCTGTGAGTACGATCTTGGTGCTCTGAAGACCTTTGCTGCTAGGGCTCCAAGTCTCCTTCTTTCTTCACTTTCGGAAAACCACATTTCTGTCCATTACTCCGTGATTCTCTATAATCCGAAGGCCCTGAACCCTAACCACCATGTTGTCAGGGGATATACCGCCTAACCAGACCATATACATCAAGAATCTCAACGAGAAGGTCAAGAAAGAAGGTGATTCACTCTTAGCTTTTCACTTAATCTTACTATATTCCTTCCGTAAATGTGTTTTCTTCTGTTCGTTAAGTAGAAACCTTAGTATAATCGAAGTGATCTTCGGCACATTTTATCTTTATCATTTCGCCTTTGGTTTCCCCGGCAAGAGAGGGGGGTTATTTGGCAAAGTTGGATTTGTTTTTATGACAGCATTTAATATTTCTTACGATGCCTACAGTAATGACTCGAGAAGATTAACGATTTCAGTTGAAATTTGAGTTTTAGGGTGATAGAGCTGGTATCTTGAAAGGTTAGTTAGAACTTGGGATTTTGTTTTCTATTTTGGTTTGTTTAGTGCCCGTTTGATAACCATTTGGTTTTTGATTTCTTGTTTTTCAAAATGAAGCTTATAAACACATTGGATTTTTTATTTTATTTTTTAATTTGTAATCTACAATTCACCAATGTTTAGTTTTTAAAAATTGTTTTTGTTTTTGGAATTGGCTAAGAATTCAACTATTGTGCATTTGTATATAAGAAATATGTAAACCGATACGAGAAATTAAGAGAAAAGATTTTTAATTTTCAAAAACCAAAAGCCAAAACAGAATGGTAACCAAACTGACCTTAATGCTCAGTTTTTGACAATATTACATCACATGTGGAGGGGTTGGTTTGAACCCAAGTCCTCATAGTGTTCAGAATTTGATGGTATACTAATTTTCTCCCCCTTGGACAGAATTGAAGAGATCCCTGTATGCTTTGTTTTCTCAATATGGAAGAATCCTTGATGTTGTTGCCTTGAAGACACCGAGGCTTCGAGGGCAAGCATGGGTTGCGTTTAGTGAAGTGACTGCAGCTAGCAATGCTGTGCGTCAGATGCAAAATTTCCCATTCTATGAAAAACCTATGGTTGGTCTTTAGCTGATCACATTTTCGAAATTGCTTTTCATACTTATTTTGTGCCTTTCATCTATGGACTGTTCTAGCGCACTTTCAATATTTCCAAGTAACTGTGGGTAGCTTTCTTTGTAAACGGGATTGGATTCTAACTGTTCAATGAGTCTTATGTTGAGATGGTCAAGAGAAAGTCTATAAACAATCACCCTCAATGTTGTGCCAGTTTAGCTGCTTTGCATGTCTGAAATAACGACCTAATTTTATTGGATATGTGGGTTTTTATATTGGCCATGTGCTGGTTTTAAGCATTTTGAGATCTTTCTTTGCAACCCCTATATATTGAGCATATCTTTTTTCAGTGAATGCCATCGGTCACAAATTACAAGCTTATATGCTGCTTAGAATGTTGTAACTTGGATAGAAGGAGATCATTTCTCCTTGTTCTAATGTGGGTATAATAAAGGGCTTAGTGATAATTATATCATTTCATAGTGGGACACCTATTTGGGATAGTACCCTTCAAGTTTTTTTGGACACCCAAATTTTGTAGGGTCCAATGGGTTATCCTATGAGATTAAGTTGAGATGTATCAATCTGACTTGAAACGCTTATGCCTATAAAATACAGAAGGAAAAAAAAAAAGACTTGGAGACATATCCATGATTGTGTTTGGAAGAAACAAGTATTATTATTTTTTTTGCTCTTCATTTCAGTTATTTTTTTGTTTCATCTCGAAGTTTGTGTACTATATTCAAATATACAGGTTATTCTGATGTTTAACAAGAAGATACTTCTGTTGACCATCTCAAAAATATAAATGACTTTTGTTTCTTTTGCAGCGAATTCAATATGCCAAAACCAAATCAGATTGTATTGCTAAAGCTGATGGAAGCTTTGTGCCAAGGGAGAAGAAAAAGAAGCAAGAGGAAAAAGGTGATTGTAACTGATAGACAATATATTTTCACTATGTTTTTTTGAATTTTTTGACATAACCTCTCATTTTCTTGTTGCATTGCTTTTGAAACATCTCAAGGGTTTTAAACTGGTTTATGCTCCTGACTATCTTTTAATTTGCTTATCCAGCTGAAAAAAAGCGGCGTGCTGAAGAAACACATCAATCTGCGATGCCCAATGGAACAACTACTGAGAATGGAGGTTCAAATGTAAGTTAGTTTTCATTCTTATTTTATTTTATTTTTATAAAAACTTCATTTTTATTTTCCTTCTTCATATGAGCTGTATTGTATTAATTGTTTTCACCAGAAGTGGTCCCAAACATGTATTGTGAGTTTTTTTCGGACAACGTGGTTCTCTGGTTAATTGTATTCTCTTCACATTTGTTAGAAAGTCATTGATGTCCATTCCAATTAGATTTTACCTTAGTGCCCCTGAGATCAGGTAAAGTTAATCAACATGTTTCCAGAACTATTTTTACTAAGAAATCCTCTTTGTTGTGTGTTATTTCTGCAGGCCACATTCCGTCATGCAAATCCGAGTGCTACAGAAGCTACTCCAAACAACATACTATTTATTGAGAATTTGCCCCATGAAACCTCTAGTATGATGTTGCAAGTCCTCTTCCAACAATATCCTGGATTCAGGGAAGTCCGGATGATTGAAGCAAAGCCGGGTATTGCTTTCGTTGAGTTTGAAGATGATGTTCAATCCTCTATGGCTATGCAGGCTCTTCAAGGCTTTAAAATTGACCCCCAACATCCCATGGCTATCTCTTTTGCAAAGAAGTAACTCAACCTTTGTTCTACTGTTACTATTTTGGAATCTGCAGCAGGTTTATGTTAATGTCACCGCACATAAACATGAGTCGTGAGTTTTTATGTAAAGTTCAGATATCCTTCCCCACCTTCAAAGAGAAAGAAAGAAGGAAAACGTTGGGAGGCAGCCCACTGGAAGCCAAGGGACTTGATGAGTTTTGCGGGCTATGCTAATTCCAGTTTCCAGGGGTAGCAAGAAAATAGATTTATGTTAGGTTGTCAAAAAGGAAACAGAGAGAACTAATCAAAGACCTTTTTTTCTTTAAATGTGTTCATGTATTTGTAGTAGTGGAAAACTAGCTTTTGAAAAGGGAACGGGGAGCTGAAATTTAGGGGACAATGTTGATTTGACTTTTGCATGAATATTTCGTGCTCAACAATGAAGTGTTCATTTCTGTCAGTCTCAGGGACAGTGCGTGTGTTTTCTTCCATTGGTCGATTATGAGCAAAAATTTGACCCAAACTTAGTTTCAAAGTTGTGTCATTTACCGGATCAACTGCATAGCTATTGCTCGTTTTTTTTTTTTTTAATCATTATTAAATGTGGGGCCATTTGATATTTTATTTCATAGGGATCTGTGATTCCATCAACTGCTGACCTTCACAGAACTTCAGTGCTAAAACTGACATTGCGTCTCTCTTTGGGTATCTTCATTCAGATACATCGACCACGTCGCCTGTAAGTTCCCTTGTCTTTTTCTTCTTCCTGCCTATTTTCATGAAAGATTGAAAGATATCTATGATATGAATATATATATTAATTAGGTGAAAAAATTATGTTTGTTTTCTTGTGTCTTATTATCTTGTTGCAAGCTCATCACAATAATCAAAATTATGTTGGTTTCCAACTGTATTGTTTTGTAATTTTCTTTCTGTTGCAATGTTCTTTTTTGTTCTTTTTT

mRNA sequence

ATGTTGTCAGGGGATATACCGCCTAACCAGACCATATACATCAAGAATCTCAACGAGAAGGTCAAGAAAGAAGAATTGAAGAGATCCCTGTATGCTTTGTTTTCTCAATATGGAAGAATCCTTGATGTTGTTGCCTTGAAGACACCGAGGCTTCGAGGGCAAGCATGGGTTGCGTTTAGTGAAGTGACTGCAGCTAGCAATGCTGTGCGTCAGATGCAAAATTTCCCATTCTATGAAAAACCTATGCGAATTCAATATGCCAAAACCAAATCAGATTGTATTGCTAAAGCTGATGGAAGCTTTGTGCCAAGGGAGAAGAAAAAGAAGCAAGAGGAAAAAGCTGAAAAAAAGCGGCGTGCTGAAGAAACACATCAATCTGCGATGCCCAATGGAACAACTACTGAGAATGGAGGTTCAAATGCCACATTCCGTCATGCAAATCCGAGTGCTACAGAAGCTACTCCAAACAACATACTATTTATTGAGAATTTGCCCCATGAAACCTCTAGTATGATGTTGCAAGTCCTCTTCCAACAATATCCTGGATTCAGGGAAGTCCGGATGATTGAAGCAAAGCCGGGTATTGCTTTCGTTGAGTTTGAAGATGATGTTCAATCCTCTATGGCTATGCAGGCTCTTCAAGGCTTTAAAATTGACCCCCAACATCCCATGGCTATCTCTTTTGCAAAGAAGTAA

Coding sequence (CDS)

ATGTTGTCAGGGGATATACCGCCTAACCAGACCATATACATCAAGAATCTCAACGAGAAGGTCAAGAAAGAAGAATTGAAGAGATCCCTGTATGCTTTGTTTTCTCAATATGGAAGAATCCTTGATGTTGTTGCCTTGAAGACACCGAGGCTTCGAGGGCAAGCATGGGTTGCGTTTAGTGAAGTGACTGCAGCTAGCAATGCTGTGCGTCAGATGCAAAATTTCCCATTCTATGAAAAACCTATGCGAATTCAATATGCCAAAACCAAATCAGATTGTATTGCTAAAGCTGATGGAAGCTTTGTGCCAAGGGAGAAGAAAAAGAAGCAAGAGGAAAAAGCTGAAAAAAAGCGGCGTGCTGAAGAAACACATCAATCTGCGATGCCCAATGGAACAACTACTGAGAATGGAGGTTCAAATGCCACATTCCGTCATGCAAATCCGAGTGCTACAGAAGCTACTCCAAACAACATACTATTTATTGAGAATTTGCCCCATGAAACCTCTAGTATGATGTTGCAAGTCCTCTTCCAACAATATCCTGGATTCAGGGAAGTCCGGATGATTGAAGCAAAGCCGGGTATTGCTTTCGTTGAGTTTGAAGATGATGTTCAATCCTCTATGGCTATGCAGGCTCTTCAAGGCTTTAAAATTGACCCCCAACATCCCATGGCTATCTCTTTTGCAAAGAAGTAA

Protein sequence

MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPREKKKKQEEKAEKKRRAEETHQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Homology
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BLAST of CsaV3_1G004710 vs. NCBI nr
Match: XP_004137370.1 (PREDICTED: U2 small nuclear ribonucleoprotein B'' 2-like [Cucumis sativus] >KGN63915.1 hypothetical protein Csa_1G025950 [Cucumis sativus])

HSP 1 Score: 380.2 bits (975), Expect = 5.1e-102
Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 0 

Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPRXXXXXXXXXXXXXXXX 120
           EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPRXXXXXXXXXXXXXXXX
Sbjct: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPRXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQY 180
           XXXXXXXXXXXXXXXXXXSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 XXXXXXXXXXXXXXXXXXSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

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BLAST of CsaV3_1G004710 vs. NCBI nr
Match: XP_008457301.1 (PREDICTED: U2 small nuclear ribonucleoprotein B'' 2-like [Cucumis melo])

HSP 1 Score: 378.6 bits (971), Expect = 1.5e-101
Identity = 228/231 (98.70%), Postives = 230/231 (99.57%), Query Frame = 0 

Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPRXXXXXXXXXXXXXXXX 120
           EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDC+AKADG+FVPR XXXXXXXXXXXXXXX
Sbjct: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGTFVPREXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQY 180
           XXXXXXXXXXXXXXXXXXSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 XXXXXXXXXXXXXXXXXXSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

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BLAST of CsaV3_1G004710 vs. NCBI nr
Match: XP_022949507.1 (U2 small nuclear ribonucleoprotein B'' 2-like [Cucurbita moschata] >XP_022998346.1 U2 small nuclear ribonucleoprotein B'' 2-like [Cucurbita maxima])

HSP 1 Score: 374.0 bits (959), Expect = 3.7e-100
Identity = 211/231 (91.34%), Postives = 213/231 (92.21%), Query Frame = 0 

Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML GDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPRXXXXXXXXXXXXXXXX 120
           EVTAASNAVRQMQNFPFY+KPMRIQYAKTKSDC+AKADGSFVPR XXXXXXXXXXXXXXX
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQY 180
           XXX               SNATFRHANPSA EATPNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 XXXHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

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BLAST of CsaV3_1G004710 vs. NCBI nr
Match: XP_023525708.1 (U2 small nuclear ribonucleoprotein B'' 2-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023525709.1 U2 small nuclear ribonucleoprotein B'' 2-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 374.0 bits (959), Expect = 3.7e-100
Identity = 209/231 (90.48%), Postives = 211/231 (91.34%), Query Frame = 0 

Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML GDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPRXXXXXXXXXXXXXXXX 120
           EVTAASNAVRQMQNFPFY+KPMRIQYAKTKSDC+AKADGSFVPR XXXXXXXXXXXXXXX
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQY 180
           X                 SNATFRHANPSA EATPNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 XETHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

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BLAST of CsaV3_1G004710 vs. NCBI nr
Match: XP_022154903.1 (U2 small nuclear ribonucleoprotein B'' 2-like [Momordica charantia])

HSP 1 Score: 372.5 bits (955), Expect = 1.1e-99
Identity = 220/231 (95.24%), Postives = 224/231 (96.97%), Query Frame = 0 

Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLSGDIPPNQTIY+KNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLSGDIPPNQTIYVKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPRXXXXXXXXXXXXXXXX 120
           EVTAASNAVRQMQNFPFY+KPMRIQYAK+KSDC+AKADGSFVPR XXXXXXXXXXXXXXX
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKADGSFVPREXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQY 180
           XXXXXXXXXXXXXX    SNATFRHANPSA EA PNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 XXXXXXXXXXXXXXENGSSNATFRHANPSAPEAAPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]
BLAST of CsaV3_1G004710 vs. TAIR10
Match: AT2G30260.1 (U2 small nuclear ribonucleoprotein B)

HSP 1 Score: 300.1 bits (767), Expect = 1.2e-81
Identity = 180/232 (77.59%), Postives = 205/232 (88.36%), Query Frame = 0 

Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML+ DIPPNQ+IYI+NLNE++KKEELKRSLY LFSQ+GRILDVVALKTP+LRGQAWV FS
Sbjct: 1   MLTADIPPNQSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPRXXXXXXXXXXXXXXXX 120
           EVTAA +AVRQMQNFPFY+KPMR+QYAK KSDC+AKA+G+FVP+     XXXXXXXXXXX
Sbjct: 61  EVTAAGHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXSNATFRHANPSATEA-TPNNILFIENLPHETSSMMLQVLFQQ 180
           XXXXXXXXXXXXXXXXXX         PS  E   PNNILFI+NLPHET+SMMLQ+LF+Q
Sbjct: 121 XXXXXXXXXXXXXXXXXXXGVPAPSFQPSGQETMPPNNILFIQNLPHETTSMMLQLLFEQ 180

Query: 181 YPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           YPGF+E+RMI+AKPGIAFVE+EDDVQ+S+AMQ LQGFKI PQ+PM ISFAKK
Sbjct: 181 YPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQGFKITPQNPMVISFAKK 232

[Close]
BLAST of CsaV3_1G004710 vs. TAIR10
Match: AT1G06960.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 296.2 bits (757), Expect = 1.8e-80
Identity = 153/232 (65.95%), Postives = 177/232 (76.29%), Query Frame = 0 

Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML+ DIPPNQ+IYIK++NEK+KKEELKRSLY LFSQ+GR+LDVVALKTP+LRGQAWV F+
Sbjct: 1   MLTADIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFT 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPRXXXXXXXXXXXXXXXX 120
           EVTAASNAVRQMQNFPFY+KPMRIQYAK+KSD + KA+GSFVP+                
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHA 120

Query: 121 XXXXXXXXXXXXXXXXXXSNATFRHANPSATEA-TPNNILFIENLPHETSSMMLQVLFQQ 180
                                 F+   PS  +   PNNILFI NLP ET+SMMLQ+LF+Q
Sbjct: 121 EETQQPSMPNGATTQNGMPVPPFQ---PSGQDTMPPNNILFIHNLPIETNSMMLQLLFEQ 180

Query: 181 YPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           YPGF+E+RMIEAKPGIAFVE+EDDVQSSMAMQALQGFKI PQ+PM +SFAKK
Sbjct: 181 YPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 229

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BLAST of CsaV3_1G004710 vs. TAIR10
Match: AT2G47580.1 (spliceosomal protein U1A)

HSP 1 Score: 225.7 bits (574), Expect = 2.9e-59
Identity = 136/239 (56.90%), Postives = 168/239 (70.29%), Query Frame = 0 

Query: 5   DIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTA 64
           ++ PNQTIYI NLNEKVK +ELK+SL A+FSQ+G+IL+++A KT + +GQAWV F    +
Sbjct: 13  EVSPNQTIYINNLNEKVKLDELKKSLNAVFSQFGKILEILAFKTFKHKGQAWVVFDNTES 72

Query: 65  ASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPR---------XXXXXXXXXXX 124
           AS A+ +M NFPFY+K MRIQYAKTKSD +AKADG+FVPR         XXXXXXXXXXX
Sbjct: 73  ASTAIAKMNNFPFYDKEMRIQYAKTKSDVVAKADGTFVPREXXXXXXXXXXXXXXXXXXX 132

Query: 125 XXXXXXXXXXXXXXXXXXXXXXXSNATF---RHANPSATEATPNNILFIENLPHETSSMM 184
           XX                     S   +      N     A PNNILF++NLPHET+ M+
Sbjct: 133 XXTQMGMPMNSAYPGVYGAAPPLSQVPYPGGMKPNMPEAPAPPNNILFVQNLPHETTPMV 192

Query: 185 LQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           LQ+LF QY GF+EVRMIEAKPGIAFVEF D++QS++AMQ LQGFKI  Q+ M I++AKK
Sbjct: 193 LQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAMQGLQGFKIQ-QNQMLITYAKK 250

[Close]
BLAST of CsaV3_1G004710 vs. TAIR10
Match: AT2G23350.1 (poly(A) binding protein 4)

HSP 1 Score: 45.4 bits (106), Expect = 5.4e-05
Identity = 27/92 (29.35%), Postives = 47/92 (51.09%), Query Frame = 0 

Query: 12  IYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTP--RLRGQAWVAFSEVTAASNAV 71
           +Y+KNL++ V  E+L+     LF+++G I     ++ P    +G  +VAFS  + AS  +
Sbjct: 330 LYVKNLDDTVTDEKLRE----LFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVL 389

Query: 72  RQMQNFPFYEKPMRIQYAKTKSDCIAKADGSF 102
            +M       KP+ +  A+ K +  AK    F
Sbjct: 390 NEMNGKMVGGKPLYVALAQRKEERRAKLQAQF 417

[Close]
BLAST of CsaV3_1G004710 vs. TAIR10
Match: AT3G61860.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 41.6 bits (96), Expect = 7.8e-04
Identity = 27/79 (34.18%), Postives = 49/79 (62.03%), Query Frame = 0 

Query: 12 IYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQ 71
          +++ N   + ++ +L+R    LF +YGR+ D V +K+    G A+V F +   A +A+R+
Sbjct: 4  VFVGNFEYETRQSDLER----LFDKYGRV-DRVDMKS----GYAFVYFEDERDAEDAIRK 63

Query: 72 MQNFPF-YEK-PMRIQYAK 89
          + NFPF YEK  + +++AK
Sbjct: 64 LDNFPFGYEKRRLSVEWAK 73

[Close]
BLAST of CsaV3_1G004710 vs. Swiss-Prot
Match: sp|O22922|RU2B1_ARATH (U2 small nuclear ribonucleoprotein B'' OS=Arabidopsis thaliana OX=3702 GN=U2B'' PE=1 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 2.2e-80
Identity = 180/232 (77.59%), Postives = 205/232 (88.36%), Query Frame = 0 

Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML+ DIPPNQ+IYI+NLNE++KKEELKRSLY LFSQ+GRILDVVALKTP+LRGQAWV FS
Sbjct: 1   MLTADIPPNQSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPRXXXXXXXXXXXXXXXX 120
           EVTAA +AVRQMQNFPFY+KPMR+QYAK KSDC+AKA+G+FVP+     XXXXXXXXXXX
Sbjct: 61  EVTAAGHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXSNATFRHANPSATEA-TPNNILFIENLPHETSSMMLQVLFQQ 180
           XXXXXXXXXXXXXXXXXX         PS  E   PNNILFI+NLPHET+SMMLQ+LF+Q
Sbjct: 121 XXXXXXXXXXXXXXXXXXXGVPAPSFQPSGQETMPPNNILFIQNLPHETTSMMLQLLFEQ 180

Query: 181 YPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           YPGF+E+RMI+AKPGIAFVE+EDDVQ+S+AMQ LQGFKI PQ+PM ISFAKK
Sbjct: 181 YPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQGFKITPQNPMVISFAKK 232

[Close]
BLAST of CsaV3_1G004710 vs. Swiss-Prot
Match: sp|Q8H1S6|RU2B2_ARATH (U2 small nuclear ribonucleoprotein B'' 2 OS=Arabidopsis thaliana OX=3702 GN=At1g06960 PE=1 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 3.2e-79
Identity = 153/232 (65.95%), Postives = 177/232 (76.29%), Query Frame = 0 

Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML+ DIPPNQ+IYIK++NEK+KKEELKRSLY LFSQ+GR+LDVVALKTP+LRGQAWV F+
Sbjct: 1   MLTADIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFT 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPRXXXXXXXXXXXXXXXX 120
           EVTAASNAVRQMQNFPFY+KPMRIQYAK+KSD + KA+GSFVP+                
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHA 120

Query: 121 XXXXXXXXXXXXXXXXXXSNATFRHANPSATEA-TPNNILFIENLPHETSSMMLQVLFQQ 180
                                 F+   PS  +   PNNILFI NLP ET+SMMLQ+LF+Q
Sbjct: 121 EETQQPSMPNGATTQNGMPVPPFQ---PSGQDTMPPNNILFIHNLPIETNSMMLQLLFEQ 180

Query: 181 YPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           YPGF+E+RMIEAKPGIAFVE+EDDVQSSMAMQALQGFKI PQ+PM +SFAKK
Sbjct: 181 YPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 229

[Close]
BLAST of CsaV3_1G004710 vs. Swiss-Prot
Match: sp|B8AM21|RU2B_ORYSI (U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. indica OX=39946 GN=OsI_11177 PE=3 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 5.2e-74
Identity = 184/236 (77.97%), Postives = 201/236 (85.17%), Query Frame = 0 

Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLSGDIPPNQT+Y++NLNEKVKKEELKRSLYAL SQYGRILDVVALKTP+LRGQAWV FS
Sbjct: 1   MLSGDIPPNQTVYLRNLNEKVKKEELKRSLYALCSQYGRILDVVALKTPKLRGQAWVVFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPRXXXXXXXXXXXXXXXX 120
           E+TAA+NA R +Q F FY K MR+QYAKTKSDC+A  DGS     XXXXXXXXXXXXXXX
Sbjct: 61  EITAATNAFRGLQEFDFYGKRMRVQYAKTKSDCLATEDGS----TXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXSNATFRHAN-----PSATEATPNNILFIENLPHETSSMMLQV 180
           XXXXXXXXXXXXXXXXXXSN T   A+          A PNNILFI+NLP ET+SMMLQ+
Sbjct: 121 XXXXXXXXXXXXXXXXXXSNGTGYQASRLGKTSQEPPAPPNNILFIQNLPAETTSMMLQI 180

Query: 181 LFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           LFQQYPGFREVRMIEAKPGIAFVE+EDD QS +AMQALQGFKI P +PMAIS+AKK
Sbjct: 181 LFQQYPGFREVRMIEAKPGIAFVEYEDDSQSMVAMQALQGFKITPYNPMAISYAKK 232

[Close]
BLAST of CsaV3_1G004710 vs. Swiss-Prot
Match: sp|Q10MR0|RU2B_ORYSJ (U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0298800 PE=2 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 1.2e-73
Identity = 183/236 (77.54%), Postives = 201/236 (85.17%), Query Frame = 0 

Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLSGDIPPNQT+Y++NLNEKVKKEELKRSLYAL SQYGRILDVVALKTP+LRGQAWV FS
Sbjct: 1   MLSGDIPPNQTVYLRNLNEKVKKEELKRSLYALCSQYGRILDVVALKTPKLRGQAWVVFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPRXXXXXXXXXXXXXXXX 120
           E+TAA+NA R +Q F FY K MR+QYAKT+SDC+A  DGS     XXXXXXXXXXXXXXX
Sbjct: 61  EITAATNAFRGLQEFDFYGKRMRVQYAKTRSDCLATEDGS----TXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXSNATFRHAN-----PSATEATPNNILFIENLPHETSSMMLQV 180
           XXXXXXXXXXXXXXXXXXSN T   A+          A PNNILFI+NLP ET+SMMLQ+
Sbjct: 121 XXXXXXXXXXXXXXXXXXSNGTGYQASRLGKTSQEPPAPPNNILFIQNLPAETTSMMLQI 180

Query: 181 LFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           LFQQYPGFREVRMIEAKPGIAFVE+EDD QS +AMQALQGFKI P +PMAIS+AKK
Sbjct: 181 LFQQYPGFREVRMIEAKPGIAFVEYEDDSQSMVAMQALQGFKITPYNPMAISYAKK 232

[Close]
BLAST of CsaV3_1G004710 vs. Swiss-Prot
Match: sp|A2Y0J7|RU1A_ORYSI (U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. indica OX=39946 GN=OsI_18512 PE=3 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 8.1e-59
Identity = 135/234 (57.69%), Postives = 163/234 (69.66%), Query Frame = 0 

Query: 7   PPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAAS 66
           PPN TIYI NLNEK+K EELK+SL A+FSQ+G+ILDV+A KT + +GQAWV F +V +A+
Sbjct: 20  PPNVTIYINNLNEKIKLEELKKSLRAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASAT 79

Query: 67  NAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPR-------XXXXXXXXXXXXXXX 126
            A++ MQ+FPF+ KPMRIQYAKTKSD IAKADG+FVPR       XXXXXXXXXXX    
Sbjct: 80  EALKSMQDFPFHNKPMRIQYAKTKSDIIAKADGTFVPRERRKXXXXXXXXXXXXXXHHDV 139

Query: 127 XXXXXXXXXXXXXXXXXXXSNATFRHANPSATE--ATPNNILFIENLPHETSSMMLQVLF 186
                              S   F  A          PNNILF++NLPHET+ MMLQ+LF
Sbjct: 140 SQVGLGVNAYPGVYGAPPLSQLPFAGAQKVMMPEIIVPNNILFVQNLPHETTPMMLQMLF 199

Query: 187 QQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
            QYPGF+EVRM+EAKPGIAFVE+ D+ Q++ AM  LQGFKI   + M IS+AKK
Sbjct: 200 CQYPGFKEVRMVEAKPGIAFVEYGDEGQATAAMNHLQGFKITKDNQMLISYAKK 253

[Close]
BLAST of CsaV3_1G004710 vs. TrEMBL
Match: tr|A0A0A0LPT7|A0A0A0LPT7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G025950 PE=4 SV=1)

HSP 1 Score: 380.2 bits (975), Expect = 3.4e-102
Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 0 

Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPRXXXXXXXXXXXXXXXX 120
           EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPRXXXXXXXXXXXXXXXX
Sbjct: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPRXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQY 180
           XXXXXXXXXXXXXXXXXXSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 XXXXXXXXXXXXXXXXXXSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]
BLAST of CsaV3_1G004710 vs. TrEMBL
Match: tr|A0A1S3C564|A0A1S3C564_CUCME (U2 small nuclear ribonucleoprotein B'' 2-like OS=Cucumis melo OX=3656 GN=LOC103497024 PE=4 SV=1)

HSP 1 Score: 378.6 bits (971), Expect = 9.8e-102
Identity = 228/231 (98.70%), Postives = 230/231 (99.57%), Query Frame = 0 

Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPRXXXXXXXXXXXXXXXX 120
           EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDC+AKADG+FVPR XXXXXXXXXXXXXXX
Sbjct: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGTFVPREXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQY 180
           XXXXXXXXXXXXXXXXXXSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 XXXXXXXXXXXXXXXXXXSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]
BLAST of CsaV3_1G004710 vs. TrEMBL
Match: tr|A0A2P5CT04|A0A2P5CT04_PARAD (U1 small nuclear ribonucleoprotein A/U2 small nuclear ribonucleoprotein B OS=Parasponia andersonii OX=3476 GN=PanWU01x14_127070 PE=4 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 3.3e-89
Identity = 199/232 (85.78%), Postives = 213/232 (91.81%), Query Frame = 0 

Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLSGDIPPNQTIYIKNLNEK+KKEELKRSLYALFSQYGRILDVVALKTP+LRGQAW+AFS
Sbjct: 1   MLSGDIPPNQTIYIKNLNEKIKKEELKRSLYALFSQYGRILDVVALKTPKLRGQAWIAFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPRXXXXXXXXXXXXXXXX 120
           EV AASNAVRQMQNFPFY+KPMRIQYAKTKSDC+AKA+GS+VPR XXXXXXXXXXXXXXX
Sbjct: 61  EVPAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKAEGSYVPREXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXSNATFRHANPSATE-ATPNNILFIENLPHETSSMMLQVLFQQ 180
           XXXXXXXXXX        + A FR  N SA E A PNNILFIENLPHET+SMML++LF+Q
Sbjct: 121 XXXXXXXXXXGTRAENGTTPAPFRQGNASAQEAAAPNNILFIENLPHETTSMMLELLFRQ 180

Query: 181 YPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           YPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKI PQ+PMAI+FAKK
Sbjct: 181 YPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 232

[Close]
BLAST of CsaV3_1G004710 vs. TrEMBL
Match: tr|A0A2P5AB59|A0A2P5AB59_9ROSA (U1 small nuclear ribonucleoprotein A/U2 small nuclear ribonucleoprotein B OS=Trema orientalis OX=63057 GN=TorRG33x02_354460 PE=4 SV=1)

HSP 1 Score: 335.5 bits (859), Expect = 9.5e-89
Identity = 199/232 (85.78%), Postives = 212/232 (91.38%), Query Frame = 0 

Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLSGDIPPNQTIYIKNLNEK+KKEELKRSLYALFSQYGRILDVVALKT +LRGQAW+AFS
Sbjct: 1   MLSGDIPPNQTIYIKNLNEKIKKEELKRSLYALFSQYGRILDVVALKTSKLRGQAWIAFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPRXXXXXXXXXXXXXXXX 120
           EV AASNAVRQMQNFPFY+KPMRIQYAKTKSDC+AKA+GS+VPR XXXXXXXXXXXXXXX
Sbjct: 61  EVPAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKAEGSYVPREXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXSNATFRHANPSATE-ATPNNILFIENLPHETSSMMLQVLFQQ 180
           XXXXXXXXXX        + A FR  N SA E A PNNILFIENLPHET+SMML++LFQQ
Sbjct: 121 XXXXXXXXXXGTRAENGTTPAPFRQGNASAQEAAAPNNILFIENLPHETTSMMLELLFQQ 180

Query: 181 YPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           YPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKI PQ+PMAI+FAKK
Sbjct: 181 YPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 232

[Close]
BLAST of CsaV3_1G004710 vs. TrEMBL
Match: tr|A0A2P6QKJ1|A0A2P6QKJ1_ROSCH (Putative nucleotide-binding alpha-beta plait domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0071861 PE=4 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 2.0e-86
Identity = 179/233 (76.82%), Postives = 193/233 (82.83%), Query Frame = 0 

Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLSGDIPPNQTIYIKNLNEK+KKEELKRSLY LFSQYGRILDVVALKTP+LRGQAWVAF 
Sbjct: 1   MLSGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRILDVVALKTPKLRGQAWVAFL 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPRXXXXXXXXXXXXXXXX 120
           EVT+ASNAVRQMQNFPFY+KPMRIQYAKTKSDCIAK +GSFVPR          XXXXXX
Sbjct: 61  EVTSASNAVRQMQNFPFYDKPMRIQYAKTKSDCIAKVEGSFVPRDKKRKQEERAXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXSNAT-FRHANPSATE-ATPNNILFIENLPHETSSMMLQVLFQ 180
           XXX                  T +R  NP+A E A PNNILFIENLPHET+S ML++LF+
Sbjct: 121 XXXGPQSAPANGGATENGGRTTSYRSGNPNANETAAPNNILFIENLPHETTSAMLELLFK 180

Query: 181 QYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           QYPGFREVRMI+AKPGIAFVEFEDDVQSSMAMQALQGFK+ PQ+PM ISFAKK
Sbjct: 181 QYPGFREVRMIDAKPGIAFVEFEDDVQSSMAMQALQGFKVTPQNPMGISFAKK 233

The following BLAST results are available for this feature:
BLAST of CsaV3_1G004710 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004137370.15.1e-102100.00PREDICTED: U2 small nuclear ribonucleoprotein B'' 2-like [Cucumis sativus] >KGN6... [more]
XP_008457301.11.5e-10198.70PREDICTED: U2 small nuclear ribonucleoprotein B'' 2-like [Cucumis melo][more]
XP_022949507.13.7e-10091.34U2 small nuclear ribonucleoprotein B'' 2-like [Cucurbita moschata] >XP_022998346... [more]
XP_023525708.13.7e-10090.48U2 small nuclear ribonucleoprotein B'' 2-like isoform X1 [Cucurbita pepo subsp. ... [more]
XP_022154903.11.1e-9995.24U2 small nuclear ribonucleoprotein B'' 2-like [Momordica charantia][more]
BLAST of CsaV3_1G004710 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G30260.11.2e-8177.59U2 small nuclear ribonucleoprotein B[more]
AT1G06960.11.8e-8065.95RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT2G47580.12.9e-5956.90spliceosomal protein U1A[more]
AT2G23350.15.4e-0529.35poly(A) binding protein 4[more]
AT3G61860.17.8e-0434.18RNA-binding (RRM/RBD/RNP motifs) family protein[more]
BLAST of CsaV3_1G004710 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|O22922|RU2B1_ARATH2.2e-8077.59U2 small nuclear ribonucleoprotein B'' OS=Arabidopsis thaliana OX=3702 GN=U2B'' ... [more]
sp|Q8H1S6|RU2B2_ARATH3.2e-7965.95U2 small nuclear ribonucleoprotein B'' 2 OS=Arabidopsis thaliana OX=3702 GN=At1g... [more]
sp|B8AM21|RU2B_ORYSI5.2e-7477.97U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. indica OX=39946 GN... [more]
sp|Q10MR0|RU2B_ORYSJ1.2e-7377.54U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. japonica OX=39947 ... [more]
sp|A2Y0J7|RU1A_ORYSI8.1e-5957.69U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. indica OX=39946 GN=O... [more]
BLAST of CsaV3_1G004710 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LPT7|A0A0A0LPT7_CUCSA3.4e-102100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G025950 PE=4 SV=1[more]
tr|A0A1S3C564|A0A1S3C564_CUCME9.8e-10298.70U2 small nuclear ribonucleoprotein B'' 2-like OS=Cucumis melo OX=3656 GN=LOC1034... [more]
tr|A0A2P5CT04|A0A2P5CT04_PARAD3.3e-8985.78U1 small nuclear ribonucleoprotein A/U2 small nuclear ribonucleoprotein B OS=Par... [more]
tr|A0A2P5AB59|A0A2P5AB59_9ROSA9.5e-8985.78U1 small nuclear ribonucleoprotein A/U2 small nuclear ribonucleoprotein B OS=Tre... [more]
tr|A0A2P6QKJ1|A0A2P6QKJ1_ROSCH2.0e-8676.82Putative nucleotide-binding alpha-beta plait domain-containing protein OS=Rosa c... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0000398 mRNA splicing, via spliceosome
cellular_component GO:0005575 cellular_component
cellular_component GO:0030529 intracellular ribonucleoprotein complex
cellular_component GO:0019013 viral nucleocapsid
cellular_component GO:0005685 U1 snRNP
cellular_component GO:0005686 U2 snRNP
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0017069 snRNA binding
molecular_function GO:0035614 snRNA stem-loop binding
molecular_function GO:0030619 U1 snRNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G004710.1CsaV3_1G004710.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 104..126
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 98..151
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 99..124
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 125..151
NoneNo IPR availablePANTHERPTHR10501U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN Bcoord: 7..231
NoneNo IPR availablePANTHERPTHR10501:SF32U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B''-RELATEDcoord: 7..231
NoneNo IPR availableCDDcd12246RRM1_U1A_likecoord: 11..88
e-value: 1.88167E-49
score: 157.69
NoneNo IPR availableCDDcd12247RRM2_U1A_likecoord: 155..227
e-value: 6.44699E-37
score: 124.989
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 11..85
e-value: 2.5E-12
score: 57.0
coord: 158..227
e-value: 3.6E-10
score: 49.8
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 159..219
e-value: 1.7E-12
score: 46.8
coord: 12..82
e-value: 4.1E-9
score: 36.0
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 10..89
score: 14.215
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 157..231
score: 13.294
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 150..231
e-value: 3.5E-22
score: 80.2
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 4..124
e-value: 1.1E-29
score: 104.6
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 8..99
coord: 154..221

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G004710CSPI01G04730Wild cucumber (PI 183967)cpicucB001
CsaV3_1G004710Cucsa.111900Cucumber (Gy14) v1cgycucB143
CsaV3_1G004710CmaCh01G007120Cucurbita maxima (Rimu)cmacucB0513
CsaV3_1G004710CmoCh01G007390Cucurbita moschata (Rifu)cmocucB0501
CsaV3_1G004710Cp4.1LG02g11120Cucurbita pepo (Zucchini)cpecucB0665
CsaV3_1G004710CsGy1G004600Cucumber (Gy14) v2cgybcucB002
CsaV3_1G004710Carg07032Silver-seed gourdcarcucB0555
CsaV3_1G004710Cla008105Watermelon (97103) v1cucwmB033
CsaV3_1G004710MELO3C020490Melon (DHL92) v3.5.1cucmeB033
CsaV3_1G004710ClCG03G000140Watermelon (Charleston Gray)cucwcgB057
CsaV3_1G004710Lsi02G012160Bottle gourd (USVL1VR-Ls)cuclsiB041
CsaV3_1G004710MELO3C020490.2Melon (DHL92) v3.6.1cucmedB030
CsaV3_1G004710Cla97C03G050950Watermelon (97103) v2cucwmbB050
CsaV3_1G004710Bhi08G000353Wax gourdcucwgoB066
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G004710Cucurbita maxima (Rimu)cmacucB0060
CsaV3_1G004710Cucurbita maxima (Rimu)cmacucB0101
CsaV3_1G004710Cucurbita moschata (Rifu)cmocucB0046
CsaV3_1G004710Cucurbita moschata (Rifu)cmocucB0091
CsaV3_1G004710Cucurbita pepo (Zucchini)cpecucB0444
CsaV3_1G004710Cucurbita pepo (Zucchini)cpecucB0815
CsaV3_1G004710Bottle gourd (USVL1VR-Ls)cuclsiB082
CsaV3_1G004710Melon (DHL92) v3.6.1cucmedB051
CsaV3_1G004710Watermelon (Charleston Gray)cucwcgB089
CsaV3_1G004710Watermelon (97103) v1cucwmB106