Carg07032 (gene) Silver-seed gourd

Overview
NameCarg07032
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionU2 small nuclear ribonucleoprotein B
LocationCucurbita_argyrosperma_scaffold_065 : 1028751 .. 1031510 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TGCTTCCGCCGAGTCTCCTTCGTCCTGCTACATTCGAAGAACCAGATTTGTGTTCGGTGCTCCGTGATTCTCTGTAAGCCGAAGGCGCTGAACGTGAACGCGAACCACCATGTTATTGGGGGATATACCACCTAACCAGACCATATACATTAAGAATCTCAATGAGAAGGTCAAGAAAGAAGGTGATTCTGTTCGCTTTTTGCTCATCTCTTGTGTAAATGATTTTTCTTCTGTTAAATAAGTAGATAGCTTGGACTTGAACTGATCTGCGTGACATTTTATTATTTTCGTTTCGCCTTCAGCTCTCAAAATTCATGCTACTGTCCGGGGGGGGGGGGGTGGAGGGTTTTATTTGGGCGAAGTTTGGCTTGTTTTTGTTACGGTTCTTAATATTTCTGATTGCCACACAGTGATTACTCGAGAATGTGGATATTACAGTTGGAATTTTTTTTTTAGGGTGAGGGACCTGATGACTTGAAATTTTAGTCTGGATAATCAGACGGCGTCTTGCTTTCCCGTGGCATTTTGGATTTTGTTTACTGTCTTGGTTGATTAGCCCCCTTTTTTTATAACGATTTGGACTTTAGTTTTTGGGTTTTGAAAATTAAGCTGGTAAACACAACTTCCACATTGTTTTCTTTGTTTTTCCGTCTACTTCTTATGTATGTTCTCGAAATTCAAGCTAAAATTTGGAAACTAAGAAAAGTTAATTTTTAAAAACATGTTTTTGTTCTTGGAATTTGGCATGTATATTTGGAAAGATGAAGGCCATTATAAAGAAATGAAGAGAAAACAAGCACAATTTTCAAAAATCAAAAACTAAAAAGCAAATGGTTAATCATACATGGCCTTAATATTTAGTTTTTGACAATGTTGCATCACATGTGAAGTGTGGGTTTCAATCCTATGGCTTCTTAATGTTCGGATTTGATGGTATACTGAATTTCTCCTGTTGGACAGAATTGAAGAGATCCCTCTATGCTTTGTTTTCTCAATATGGAAGGATCCTTGACGTTGTTGCCTTGAAGACACCGAGGCTTCGAGGGCAAGCATGGGTTGCATTTAGTGAAGTGACTGCAGCTAGCAATGCTGTGCGGCAGATGCAAAACTTCCCATTCTATGATAAACCTATGGTTCGTTTCTAGCTGATCACATTTTTTGAACTTGCTTTTCATAGTCTTTTCGTGGACTTTCATCTATGGGCTGTTCCAGTACGCTTCGAAGTTCTTTGGGTAACTGTGGATAGTTTGCTGGTCAGGGACTTGAAGTAATCCTGAGTGTTATGTGAAGAGCGTCATGTGAATATCTATACACAACAACACTTCCATTATGACAGTTTAGCTGCTTTGCATATCCAAAATTATGTCTTTTATCTTTTTGAATATGCAGGCTTATTATATTGGCTATATGCCTTCTTTGATCATTTTGAGATCTTCATTTGCAACTCCTGTCTATTGACATTTCTTCTGTCAATGTATGCCATCATACTTATGTAGTGCTTAAAATGTTGTCGACACACTAAATCTTGATATTGATTGTAAACTATGCGAAGGGATTTTTTTTCTCGTTTTTCTAACATAACCACAGACGTATCCATAATTCTATTTGGTACAAACAAGTATTGTTACTATCTTTTCTTCTAAACAAATCAGTTAGTTTTTGTTTCATCTTGAAAATTTGTGTATTGTCTTGTTGCCCATTCATACAATTTTCTGATATTGGATATGTAGATGACTTTATGTTGCCTATCCCAAAAGTTTGAAATGACTATTTTTCTTTTGTGCAGCGAATTCAATATGCCAAAACCAAATCAGATTGTGTTGCTAAAGCTGATGGAAGCTTTGTGCCAAGGGAGAAGAAAAAGAAGCAAGAGGAAAAAGGTGATTGTAACTCTTAGTACTCTTTCTAAATTTCTTTTGAACTTCGTTGGTGGACATAATCTTGAAGTTGGTGGGGGGACAGTTGTAATTAAACTATGAAACATTGTTTCAGGGAACTGGTTGGAAATAACCTCTCATTTTCCAATTGCACTGCTTTTAGGAATTTGCAAGGTTTTTAAACTGTGTTCCTTATTATCTTTTAATTTGTATATCCAGCTGAGAGAAAGCGACGTACTGAAGAAACACACCAGTCTGCGATGCCCAATGGAGCAACCGCTGAGAATGGAGGTTCAAATGTAAGTGTCTTCACTCTTTTTCTTTTTTGGTTTGCTTTTGTTTTTGTGATGTCAAATGGTTATTTTTCTTCTCCATATGAGCTGTATTGTATTAATTGCTACTCTAGAAGTGGTCCTGAGCATTAATTGTATTGAGTCTTTTTGGATGGCGTGGTTCTCTGGTTAGTTGTTTTTTCCTCTCATCAGTTTTTAAAGACATTGGTGTCTATTTCAATTAGATTTCATGTTAGTGCCCCTTAGATCAGGCATTGTTATTCAACTTTTTTTCACAATTATTTATGCTAAGAACGCCTCTTCATTGTGTGCAGGCCACATTCCGTCATGCAAATCCAAGCGCTCCAGAAGCTACTCCAAACAACATACTATTTATTGAGAATTTGCCTCATGAAACTTCGAGTATGATGTTGCAAGTCCTCTTCCAACAATATCCTGGATTCAGGGAAGTCCGAATGATCGAAGCAAAGCCGGGTATTGCTTTTGTTGAGTTTGAAGATGATGTTCAATCCTCTATGGCGATGCAGGCTCTTCAGGGCTTTAAAATTGATCCCCAACATCCCATGGCTATCTCTTTTGCAAAGAAGTAA

mRNA sequence

TGCTTCCGCCGAGTCTCCTTCGTCCTGCTACATTCGAAGAACCAGATTTGTGTTCGGTGCTCCGTGATTCTCTGTAAGCCGAAGGCGCTGAACGTGAACGCGAACCACCATGTTATTGGGGGATATACCACCTAACCAGACCATATACATTAAGAATCTCAATGAGAAGGTCAAGAAAGAAGAATTGAAGAGATCCCTCTATGCTTTGTTTTCTCAATATGGAAGGATCCTTGACGTTGTTGCCTTGAAGACACCGAGGCTTCGAGGGCAAGCATGGGTTGCATTTAGTGAAGTGACTGCAGCTAGCAATGCTGTGCGGCAGATGCAAAACTTCCCATTCTATGATAAACCTATGCGAATTCAATATGCCAAAACCAAATCAGATTGTGTTGCTAAAGCTGATGGAAGCTTTGTGCCAAGGGAGAAGAAAAAGAAGCAAGAGGAAAAAGCTGAGAGAAAGCGACGTACTGAAGAAACACACCAGTCTGCGATGCCCAATGGAGCAACCGCTGAGAATGGAGGTTCAAATGCCACATTCCGTCATGCAAATCCAAGCGCTCCAGAAGCTACTCCAAACAACATACTATTTATTGAGAATTTGCCTCATGAAACTTCGAGTATGATGTTGCAAGTCCTCTTCCAACAATATCCTGGATTCAGGGAAGTCCGAATGATCGAAGCAAAGCCGGGTATTGCTTTTGTTGAGTTTGAAGATGATGTTCAATCCTCTATGGCGATGCAGGCTCTTCAGGGCTTTAAAATTGATCCCCAACATCCCATGGCTATCTCTTTTGCAAAGAAGTAA

Coding sequence (CDS)

ATGTTATTGGGGGATATACCACCTAACCAGACCATATACATTAAGAATCTCAATGAGAAGGTCAAGAAAGAAGAATTGAAGAGATCCCTCTATGCTTTGTTTTCTCAATATGGAAGGATCCTTGACGTTGTTGCCTTGAAGACACCGAGGCTTCGAGGGCAAGCATGGGTTGCATTTAGTGAAGTGACTGCAGCTAGCAATGCTGTGCGGCAGATGCAAAACTTCCCATTCTATGATAAACCTATGCGAATTCAATATGCCAAAACCAAATCAGATTGTGTTGCTAAAGCTGATGGAAGCTTTGTGCCAAGGGAGAAGAAAAAGAAGCAAGAGGAAAAAGCTGAGAGAAAGCGACGTACTGAAGAAACACACCAGTCTGCGATGCCCAATGGAGCAACCGCTGAGAATGGAGGTTCAAATGCCACATTCCGTCATGCAAATCCAAGCGCTCCAGAAGCTACTCCAAACAACATACTATTTATTGAGAATTTGCCTCATGAAACTTCGAGTATGATGTTGCAAGTCCTCTTCCAACAATATCCTGGATTCAGGGAAGTCCGAATGATCGAAGCAAAGCCGGGTATTGCTTTTGTTGAGTTTGAAGATGATGTTCAATCCTCTATGGCGATGCAGGCTCTTCAGGGCTTTAAAATTGATCCCCAACATCCCATGGCTATCTCTTTTGCAAAGAAGTAA

Protein sequence

MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRTEETHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Homology
[Close]
BLAST of Carg07032 vs. NCBI nr
Match: XP_022949507.1 (U2 small nuclear ribonucleoprotein B'' 2-like [Cucurbita moschata] >XP_022998346.1 U2 small nuclear ribonucleoprotein B'' 2-like [Cucurbita maxima])

HSP 1 Score: 417.5 bits (1072), Expect = 2.9e-113
Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 0 

Query: 1   MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREXXXXXXXXXXXXXXX 120
           EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREXXXXXXXXXXXXXXX
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREXXXXXXXXXXXXXXX 120

Query: 121 XXXHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY 180
           XXXHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 XXXHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]
BLAST of Carg07032 vs. NCBI nr
Match: XP_023525708.1 (U2 small nuclear ribonucleoprotein B'' 2-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023525709.1 U2 small nuclear ribonucleoprotein B'' 2-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 417.5 bits (1072), Expect = 2.9e-113
Identity = 229/231 (99.13%), Postives = 229/231 (99.13%), Query Frame = 0 

Query: 1   MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREXXXXXXXXXXXXXXX 120
           EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREXXXXXXXXXXXXXXX
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREXXXXXXXXXXXXXXX 120

Query: 121 XXXHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY 180
           X  HQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 XETHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]
BLAST of Carg07032 vs. NCBI nr
Match: XP_022964939.1 (U2 small nuclear ribonucleoprotein B'' 2-like [Cucurbita moschata])

HSP 1 Score: 401.4 bits (1030), Expect = 2.1e-108
Identity = 203/231 (87.88%), Postives = 208/231 (90.04%), Query Frame = 0 

Query: 1   MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML GDIPPNQ+IYIKNLNE+VKKEELKRSLYALFS YGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLSGDIPPNQSIYIKNLNEEVKKEELKRSLYALFSHYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREXXXXXXXXXXXXXXX 120
           EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDC+AKADGSFVPRE               
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCIAKADGSFVPREKKKKLVEKAERKQRT 120

Query: 121 XXXHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY 180
              HQS+MPNG TAENGGSNATFRHANPS  EATPNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 EDAHQSSMPNGTTAENGGSNATFRHANPSTAEATPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           PGFREVRMIE+KPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIESKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]
BLAST of Carg07032 vs. NCBI nr
Match: XP_023519411.1 (U2 small nuclear ribonucleoprotein B'' 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 400.6 bits (1028), Expect = 3.6e-108
Identity = 203/231 (87.88%), Postives = 207/231 (89.61%), Query Frame = 0 

Query: 1   MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           M  GDIPPNQ+IYIKNLNE+VKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MYSGDIPPNQSIYIKNLNEEVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREXXXXXXXXXXXXXXX 120
           EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDC+AKADGSFVPRE               
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCIAKADGSFVPREKKKKLEEKAERKQRT 120

Query: 121 XXXHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY 180
              H+S MPNG TAENGGSNATFRHANPS  EATPNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 EDAHRSTMPNGTTAENGGSNATFRHANPSTAEATPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]
BLAST of Carg07032 vs. NCBI nr
Match: XP_022970660.1 (U2 small nuclear ribonucleoprotein B'' 2-like [Cucurbita maxima])

HSP 1 Score: 397.1 bits (1019), Expect = 4.0e-107
Identity = 201/231 (87.01%), Postives = 206/231 (89.18%), Query Frame = 0 

Query: 1   MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML GDIPPNQ+IYIKNLNE+VKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLSGDIPPNQSIYIKNLNEEVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREXXXXXXXXXXXXXXX 120
           EVTAASNAVRQM+NFPFYDKPMRIQYAKTKSDC+AK DGSFVPRE               
Sbjct: 61  EVTAASNAVRQMKNFPFYDKPMRIQYAKTKSDCIAKTDGSFVPREKKKKLEEKAERKQRT 120

Query: 121 XXXHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY 180
              HQSAMPNG TAE GGSNATFRHANPS  EATPNNILFIENLPHETSS+MLQVLFQQY
Sbjct: 121 EDAHQSAMPNGTTAETGGSNATFRHANPSTAEATPNNILFIENLPHETSSIMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           PGFREVRMIE KPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEVKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]
BLAST of Carg07032 vs. TAIR10
Match: AT1G06960.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 321.6 bits (823), Expect = 3.9e-88
Identity = 165/232 (71.12%), Postives = 188/232 (81.03%), Query Frame = 0 

Query: 1   MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML  DIPPNQ+IYIK++NEK+KKEELKRSLY LFSQ+GR+LDVVALKTP+LRGQAWV F+
Sbjct: 1   MLTADIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFT 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREXXXXXXXXXXXXXXX 120
           EVTAASNAVRQMQNFPFYDKPMRIQYAK+KSD V KA+GSFVP+E               
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHA 120

Query: 121 XXXHQSAMPNGATAENGGSNATFRHANPSAPEA-TPNNILFIENLPHETSSMMLQVLFQQ 180
               Q +MPNGAT +NG     F+   PS  +   PNNILFI NLP ET+SMMLQ+LF+Q
Sbjct: 121 EETQQPSMPNGATTQNGMPVPPFQ---PSGQDTMPPNNILFIHNLPIETNSMMLQLLFEQ 180

Query: 181 YPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           YPGF+E+RMIEAKPGIAFVE+EDDVQSSMAMQALQGFKI PQ+PM +SFAKK
Sbjct: 181 YPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 229

[Close]
BLAST of Carg07032 vs. TAIR10
Match: AT2G30260.1 (U2 small nuclear ribonucleoprotein B)

HSP 1 Score: 298.5 bits (763), Expect = 3.5e-81
Identity = 166/232 (71.55%), Postives = 190/232 (81.90%), Query Frame = 0 

Query: 1   MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML  DIPPNQ+IYI+NLNE++KKEELKRSLY LFSQ+GRILDVVALKTP+LRGQAWV FS
Sbjct: 1   MLTADIPPNQSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREXXXXXXXXXXXXXXX 120
           EVTAA +AVRQMQNFPFYDKPMR+QYAK KSDC+AKA+G+FVP++    XXXXXXXXXXX
Sbjct: 61  EVTAAGHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKXXXXXXXXXXX 120

Query: 121 XXXHQSAMPNGATAENGGSNATFRHANPSAPEA-TPNNILFIENLPHETSSMMLQVLFQQ 180
           XXX                        PS  E   PNNILFI+NLPHET+SMMLQ+LF+Q
Sbjct: 121 XXXXXXXXXXXXXXXXXXXGVPAPSFQPSGQETMPPNNILFIQNLPHETTSMMLQLLFEQ 180

Query: 181 YPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           YPGF+E+RMI+AKPGIAFVE+EDDVQ+S+AMQ LQGFKI PQ+PM ISFAKK
Sbjct: 181 YPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQGFKITPQNPMVISFAKK 232

[Close]
BLAST of Carg07032 vs. TAIR10
Match: AT2G47580.1 (spliceosomal protein U1A)

HSP 1 Score: 236.5 bits (602), Expect = 1.6e-62
Identity = 151/239 (63.18%), Postives = 182/239 (76.15%), Query Frame = 0 

Query: 5   DIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTA 64
           ++ PNQTIYI NLNEKVK +ELK+SL A+FSQ+G+IL+++A KT + +GQAWV F    +
Sbjct: 13  EVSPNQTIYINNLNEKVKLDELKKSLNAVFSQFGKILEILAFKTFKHKGQAWVVFDNTES 72

Query: 65  ASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREXXXXXXXXXXXXXXXXXXH 124
           AS A+ +M NFPFYDK MRIQYAKTKSD VAKADG+FVPREXXXXXXXXXXXXXXXXXX 
Sbjct: 73  ASTAIAKMNNFPFYDKEMRIQYAKTKSDVVAKADGTFVPREXXXXXXXXXXXXXXXXXXX 132

Query: 125 ---QSAMP-NGATAENGGSNATFRHA------NPSAPE--ATPNNILFIENLPHETSSMM 184
              Q  MP N A     G+              P+ PE  A PNNILF++NLPHET+ M+
Sbjct: 133 XXTQMGMPMNSAYPGVYGAAPPLSQVPYPGGMKPNMPEAPAPPNNILFVQNLPHETTPMV 192

Query: 185 LQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           LQ+LF QY GF+EVRMIEAKPGIAFVEF D++QS++AMQ LQGFKI  Q+ M I++AKK
Sbjct: 193 LQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAMQGLQGFKIQ-QNQMLITYAKK 250

[Close]
BLAST of Carg07032 vs. TAIR10
Match: AT2G23350.1 (poly(A) binding protein 4)

HSP 1 Score: 45.8 bits (107), Expect = 4.1e-05
Identity = 27/92 (29.35%), Postives = 47/92 (51.09%), Query Frame = 0 

Query: 12  IYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTP--RLRGQAWVAFSEVTAASNAV 71
           +Y+KNL++ V  E+L+     LF+++G I     ++ P    +G  +VAFS  + AS  +
Sbjct: 330 LYVKNLDDTVTDEKLRE----LFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVL 389

Query: 72  RQMQNFPFYDKPMRIQYAKTKSDCVAKADGSF 102
            +M       KP+ +  A+ K +  AK    F
Sbjct: 390 NEMNGKMVGGKPLYVALAQRKEERRAKLQAQF 417

[Close]
BLAST of Carg07032 vs. Swiss-Prot
Match: sp|Q8H1S6|RU2B2_ARATH (U2 small nuclear ribonucleoprotein B'' 2 OS=Arabidopsis thaliana OX=3702 GN=At1g06960 PE=1 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 7.0e-87
Identity = 165/232 (71.12%), Postives = 188/232 (81.03%), Query Frame = 0 

Query: 1   MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML  DIPPNQ+IYIK++NEK+KKEELKRSLY LFSQ+GR+LDVVALKTP+LRGQAWV F+
Sbjct: 1   MLTADIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFT 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREXXXXXXXXXXXXXXX 120
           EVTAASNAVRQMQNFPFYDKPMRIQYAK+KSD V KA+GSFVP+E               
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHA 120

Query: 121 XXXHQSAMPNGATAENGGSNATFRHANPSAPEA-TPNNILFIENLPHETSSMMLQVLFQQ 180
               Q +MPNGAT +NG     F+   PS  +   PNNILFI NLP ET+SMMLQ+LF+Q
Sbjct: 121 EETQQPSMPNGATTQNGMPVPPFQ---PSGQDTMPPNNILFIHNLPIETNSMMLQLLFEQ 180

Query: 181 YPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           YPGF+E+RMIEAKPGIAFVE+EDDVQSSMAMQALQGFKI PQ+PM +SFAKK
Sbjct: 181 YPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 229

[Close]
BLAST of Carg07032 vs. Swiss-Prot
Match: sp|O22922|RU2B1_ARATH (U2 small nuclear ribonucleoprotein B'' OS=Arabidopsis thaliana OX=3702 GN=U2B'' PE=1 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 6.4e-80
Identity = 166/232 (71.55%), Postives = 190/232 (81.90%), Query Frame = 0 

Query: 1   MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML  DIPPNQ+IYI+NLNE++KKEELKRSLY LFSQ+GRILDVVALKTP+LRGQAWV FS
Sbjct: 1   MLTADIPPNQSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREXXXXXXXXXXXXXXX 120
           EVTAA +AVRQMQNFPFYDKPMR+QYAK KSDC+AKA+G+FVP++    XXXXXXXXXXX
Sbjct: 61  EVTAAGHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKXXXXXXXXXXX 120

Query: 121 XXXHQSAMPNGATAENGGSNATFRHANPSAPEA-TPNNILFIENLPHETSSMMLQVLFQQ 180
           XXX                        PS  E   PNNILFI+NLPHET+SMMLQ+LF+Q
Sbjct: 121 XXXXXXXXXXXXXXXXXXXGVPAPSFQPSGQETMPPNNILFIQNLPHETTSMMLQLLFEQ 180

Query: 181 YPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           YPGF+E+RMI+AKPGIAFVE+EDDVQ+S+AMQ LQGFKI PQ+PM ISFAKK
Sbjct: 181 YPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQGFKITPQNPMVISFAKK 232

[Close]
BLAST of Carg07032 vs. Swiss-Prot
Match: sp|B8AM21|RU2B_ORYSI (U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. indica OX=39946 GN=OsI_11177 PE=3 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 3.6e-75
Identity = 169/232 (72.84%), Postives = 186/232 (80.17%), Query Frame = 0 

Query: 1   MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML GDIPPNQT+Y++NLNEKVKKEELKRSLYAL SQYGRILDVVALKTP+LRGQAWV FS
Sbjct: 1   MLSGDIPPNQTVYLRNLNEKVKKEELKRSLYALCSQYGRILDVVALKTPKLRGQAWVVFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREXXXXXXXXXXXXXXX 120
           E+TAA+NA R +Q F FY K MR+QYAKTKSDC+A  DGS     XXXXXXXXXXXXXXX
Sbjct: 61  EITAATNAFRGLQEFDFYGKRMRVQYAKTKSDCLATEDGSTXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXHQSAMPNGATAENG-GSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQ 180
           XXX            NG G  A+        P A PNNILFI+NLP ET+SMMLQ+LFQQ
Sbjct: 121 XXXXXXXXXXXXXXSNGTGYQASRLGKTSQEPPAPPNNILFIQNLPAETTSMMLQILFQQ 180

Query: 181 YPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           YPGFREVRMIEAKPGIAFVE+EDD QS +AMQALQGFKI P +PMAIS+AKK
Sbjct: 181 YPGFREVRMIEAKPGIAFVEYEDDSQSMVAMQALQGFKITPYNPMAISYAKK 232

[Close]
BLAST of Carg07032 vs. Swiss-Prot
Match: sp|Q10MR0|RU2B_ORYSJ (U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0298800 PE=2 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 8.0e-75
Identity = 168/232 (72.41%), Postives = 186/232 (80.17%), Query Frame = 0 

Query: 1   MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML GDIPPNQT+Y++NLNEKVKKEELKRSLYAL SQYGRILDVVALKTP+LRGQAWV FS
Sbjct: 1   MLSGDIPPNQTVYLRNLNEKVKKEELKRSLYALCSQYGRILDVVALKTPKLRGQAWVVFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREXXXXXXXXXXXXXXX 120
           E+TAA+NA R +Q F FY K MR+QYAKT+SDC+A  DGS     XXXXXXXXXXXXXXX
Sbjct: 61  EITAATNAFRGLQEFDFYGKRMRVQYAKTRSDCLATEDGSTXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXHQSAMPNGATAENG-GSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQ 180
           XXX            NG G  A+        P A PNNILFI+NLP ET+SMMLQ+LFQQ
Sbjct: 121 XXXXXXXXXXXXXXSNGTGYQASRLGKTSQEPPAPPNNILFIQNLPAETTSMMLQILFQQ 180

Query: 181 YPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           YPGFREVRMIEAKPGIAFVE+EDD QS +AMQALQGFKI P +PMAIS+AKK
Sbjct: 181 YPGFREVRMIEAKPGIAFVEYEDDSQSMVAMQALQGFKITPYNPMAISYAKK 232

[Close]
BLAST of Carg07032 vs. Swiss-Prot
Match: sp|A2Y0J7|RU1A_ORYSI (U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. indica OX=39946 GN=OsI_18512 PE=3 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 6.0e-62
Identity = 145/234 (61.97%), Postives = 176/234 (75.21%), Query Frame = 0 

Query: 7   PPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAAS 66
           PPN TIYI NLNEK+K EELK+SL A+FSQ+G+ILDV+A KT + +GQAWV F +V +A+
Sbjct: 20  PPNVTIYINNLNEKIKLEELKKSLRAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASAT 79

Query: 67  NAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREXXXXXXXXXXXXXXXXXXHQ- 126
            A++ MQ+FPF++KPMRIQYAKTKSD +AKADG+FVPRE   XXXXXXXXXXXXXX H  
Sbjct: 80  EALKSMQDFPFHNKPMRIQYAKTKSDIIAKADGTFVPRERRKXXXXXXXXXXXXXXHHDV 139

Query: 127 SAMPNGATAENGGSNATFRHANPSA-------PE-ATPNNILFIENLPHETSSMMLQVLF 186
           S +  G  A  G   A      P A       PE   PNNILF++NLPHET+ MMLQ+LF
Sbjct: 140 SQVGLGVNAYPGVYGAPPLSQLPFAGAQKVMMPEIIVPNNILFVQNLPHETTPMMLQMLF 199

Query: 187 QQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
            QYPGF+EVRM+EAKPGIAFVE+ D+ Q++ AM  LQGFKI   + M IS+AKK
Sbjct: 200 CQYPGFKEVRMVEAKPGIAFVEYGDEGQATAAMNHLQGFKITKDNQMLISYAKK 253

[Close]
BLAST of Carg07032 vs. TrEMBL
Match: tr|A0A1S3C564|A0A1S3C564_CUCME (U2 small nuclear ribonucleoprotein B'' 2-like OS=Cucumis melo OX=3656 GN=LOC103497024 PE=4 SV=1)

HSP 1 Score: 372.5 bits (955), Expect = 7.0e-100
Identity = 212/231 (91.77%), Postives = 214/231 (92.64%), Query Frame = 0 

Query: 1   MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML GDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREXXXXXXXXXXXXXXX 120
           EVTAASNAVRQMQNFPFY+KPMRIQYAKTKSDCVAKADG+FVPREXXXXXXXXXXXXXXX
Sbjct: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGTFVPREXXXXXXXXXXXXXXX 120

Query: 121 XXXHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY 180
           XXX               SNATFRHANPSA EATPNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 XXXXXXXXXXXXXXXXXXSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]
BLAST of Carg07032 vs. TrEMBL
Match: tr|A0A0A0LPT7|A0A0A0LPT7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G025950 PE=4 SV=1)

HSP 1 Score: 370.9 bits (951), Expect = 2.0e-99
Identity = 211/231 (91.34%), Postives = 213/231 (92.21%), Query Frame = 0 

Query: 1   MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML GDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREXXXXXXXXXXXXXXX 120
           EVTAASNAVRQMQNFPFY+KPMRIQYAKTKSDC+AKADGSFVPR XXXXXXXXXXXXXXX
Sbjct: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPRXXXXXXXXXXXXXXXX 120

Query: 121 XXXHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY 180
           XXX               SNATFRHANPSA EATPNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 XXXXXXXXXXXXXXXXXXSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]
BLAST of Carg07032 vs. TrEMBL
Match: tr|A0A2P5CT04|A0A2P5CT04_PARAD (U1 small nuclear ribonucleoprotein A/U2 small nuclear ribonucleoprotein B OS=Parasponia andersonii OX=3476 GN=PanWU01x14_127070 PE=4 SV=1)

HSP 1 Score: 348.2 bits (892), Expect = 1.4e-92
Identity = 199/232 (85.78%), Postives = 211/232 (90.95%), Query Frame = 0 

Query: 1   MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML GDIPPNQTIYIKNLNEK+KKEELKRSLYALFSQYGRILDVVALKTP+LRGQAW+AFS
Sbjct: 1   MLSGDIPPNQTIYIKNLNEKIKKEELKRSLYALFSQYGRILDVVALKTPKLRGQAWIAFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREXXXXXXXXXXXXXXX 120
           EV AASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKA+GS+VPREXXXXXXXXXXXXXXX
Sbjct: 61  EVPAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKAEGSYVPREXXXXXXXXXXXXXXX 120

Query: 121 XXXHQSAMPNGATAENGGSNATFRHANPSAPE-ATPNNILFIENLPHETSSMMLQVLFQQ 180
           XXX       G  AENG + A FR  N SA E A PNNILFIENLPHET+SMML++LF+Q
Sbjct: 121 XXXXXXXXXXGTRAENGTTPAPFRQGNASAQEAAAPNNILFIENLPHETTSMMLELLFRQ 180

Query: 181 YPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           YPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKI PQ+PMAI+FAKK
Sbjct: 181 YPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 232

[Close]
BLAST of Carg07032 vs. TrEMBL
Match: tr|D7SJN7|D7SJN7_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0004g07530 PE=4 SV=1)

HSP 1 Score: 347.1 bits (889), Expect = 3.2e-92
Identity = 199/234 (85.04%), Postives = 210/234 (89.74%), Query Frame = 0 

Query: 1   MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML GDIPPNQ+IYIKNLNEKVKKEELKRSLY LFSQYGRILDVVALKTP+LRGQAWV FS
Sbjct: 1   MLSGDIPPNQSIYIKNLNEKVKKEELKRSLYCLFSQYGRILDVVALKTPKLRGQAWVVFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREXXXXXXXXXXXXXXX 120
           EVTAASNAVRQMQNFPFYDKPMR+QYAKTKSDCVAKADG+FVPREXXXXXXXXXXXXXXX
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRVQYAKTKSDCVAKADGTFVPREXXXXXXXXXXXXXXX 120

Query: 121 XXXHQSAMPNGATAE-NGGSNATFRHANPSA--PEATPNNILFIENLPHETSSMMLQVLF 180
           XXX      NG  AE NGG    FR  N  A  PEA PNNILFI+NLPH+T+SMMLQVLF
Sbjct: 121 XXXXXXXNANGRNAETNGGPTPPFRQGNQGAREPEAAPNNILFIQNLPHQTTSMMLQVLF 180

Query: 181 QQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           QQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAM+ALQGFKI PQ+PMAI++AKK
Sbjct: 181 QQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMEALQGFKITPQNPMAIAYAKK 234

[Close]
BLAST of Carg07032 vs. TrEMBL
Match: tr|A0A2P5AB59|A0A2P5AB59_9ROSA (U1 small nuclear ribonucleoprotein A/U2 small nuclear ribonucleoprotein B OS=Trema orientalis OX=63057 GN=TorRG33x02_354460 PE=4 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 4.1e-92
Identity = 199/232 (85.78%), Postives = 210/232 (90.52%), Query Frame = 0 

Query: 1   MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML GDIPPNQTIYIKNLNEK+KKEELKRSLYALFSQYGRILDVVALKT +LRGQAW+AFS
Sbjct: 1   MLSGDIPPNQTIYIKNLNEKIKKEELKRSLYALFSQYGRILDVVALKTSKLRGQAWIAFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREXXXXXXXXXXXXXXX 120
           EV AASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKA+GS+VPREXXXXXXXXXXXXXXX
Sbjct: 61  EVPAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKAEGSYVPREXXXXXXXXXXXXXXX 120

Query: 121 XXXHQSAMPNGATAENGGSNATFRHANPSAPE-ATPNNILFIENLPHETSSMMLQVLFQQ 180
           XXX       G  AENG + A FR  N SA E A PNNILFIENLPHET+SMML++LFQQ
Sbjct: 121 XXXXXXXXXXGTRAENGTTPAPFRQGNASAQEAAAPNNILFIENLPHETTSMMLELLFQQ 180

Query: 181 YPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           YPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKI PQ+PMAI+FAKK
Sbjct: 181 YPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 232

The following BLAST results are available for this feature:
BLAST of Carg07032 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022949507.12.9e-113100.00U2 small nuclear ribonucleoprotein B'' 2-like [Cucurbita moschata] >XP_022998346... [more]
XP_023525708.12.9e-11399.13U2 small nuclear ribonucleoprotein B'' 2-like isoform X1 [Cucurbita pepo subsp. ... [more]
XP_022964939.12.1e-10887.88U2 small nuclear ribonucleoprotein B'' 2-like [Cucurbita moschata][more]
XP_023519411.13.6e-10887.88U2 small nuclear ribonucleoprotein B'' 2-like [Cucurbita pepo subsp. pepo][more]
XP_022970660.14.0e-10787.01U2 small nuclear ribonucleoprotein B'' 2-like [Cucurbita maxima][more]
BLAST of Carg07032 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G06960.13.9e-8871.12RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT2G30260.13.5e-8171.55U2 small nuclear ribonucleoprotein B[more]
AT2G47580.11.6e-6263.18spliceosomal protein U1A[more]
AT2G23350.14.1e-0529.35poly(A) binding protein 4[more]
BLAST of Carg07032 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q8H1S6|RU2B2_ARATH7.0e-8771.12U2 small nuclear ribonucleoprotein B'' 2 OS=Arabidopsis thaliana OX=3702 GN=At1g... [more]
sp|O22922|RU2B1_ARATH6.4e-8071.55U2 small nuclear ribonucleoprotein B'' OS=Arabidopsis thaliana OX=3702 GN=U2B'' ... [more]
sp|B8AM21|RU2B_ORYSI3.6e-7572.84U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. indica OX=39946 GN... [more]
sp|Q10MR0|RU2B_ORYSJ8.0e-7572.41U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. japonica OX=39947 ... [more]
sp|A2Y0J7|RU1A_ORYSI6.0e-6261.97U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. indica OX=39946 GN=O... [more]
BLAST of Carg07032 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3C564|A0A1S3C564_CUCME7.0e-10091.77U2 small nuclear ribonucleoprotein B'' 2-like OS=Cucumis melo OX=3656 GN=LOC1034... [more]
tr|A0A0A0LPT7|A0A0A0LPT7_CUCSA2.0e-9991.34Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G025950 PE=4 SV=1[more]
tr|A0A2P5CT04|A0A2P5CT04_PARAD1.4e-9285.78U1 small nuclear ribonucleoprotein A/U2 small nuclear ribonucleoprotein B OS=Par... [more]
tr|D7SJN7|D7SJN7_VITVI3.2e-9285.04Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0004g07530 PE=4 SV=... [more]
tr|A0A2P5AB59|A0A2P5AB59_9ROSA4.1e-9285.78U1 small nuclear ribonucleoprotein A/U2 small nuclear ribonucleoprotein B OS=Tre... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005575 cellular_component
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg07032-RACarg07032-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 158..227
e-value: 3.6E-10
score: 49.8
coord: 11..85
e-value: 8.9E-13
score: 58.4
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 159..219
e-value: 1.7E-12
score: 46.8
coord: 12..82
e-value: 2.1E-9
score: 37.0
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 157..231
score: 13.294
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 10..89
score: 14.368
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 5..121
e-value: 3.8E-30
score: 106.1
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 151..231
e-value: 4.3E-22
score: 79.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 125..152
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 97..152
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 99..124
NoneNo IPR availablePANTHERPTHR10501:SF32U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B''-RELATEDcoord: 7..231
NoneNo IPR availablePANTHERPTHR10501U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN Bcoord: 7..231
NoneNo IPR availableCDDcd12246RRM1_U1A_likecoord: 11..88
e-value: 3.28184E-50
score: 159.616
NoneNo IPR availableCDDcd12247RRM2_U1A_likecoord: 155..227
e-value: 4.73197E-37
score: 125.374
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 8..99
coord: 154..221

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg07032Cla008105Watermelon (97103) v1carwmB0517
Carg07032Csa1G025950Cucumber (Chinese Long) v2carcuB0549
Carg07032MELO3C020490Melon (DHL92) v3.5.1carmeB0524
Carg07032ClCG03G000140Watermelon (Charleston Gray)carwcgB0506
Carg07032CSPI01G04730Wild cucumber (PI 183967)carcpiB0556
Carg07032Cucsa.111900Cucumber (Gy14) v1carcgyB0597
Carg07032CmaCh01G007120Cucurbita maxima (Rimu)carcmaB0731
Carg07032CmaCh13G000270Cucurbita maxima (Rimu)carcmaB0728
Carg07032CmoCh01G007390Cucurbita moschata (Rifu)carcmoB0708
Carg07032CmoCh13G000160Cucurbita moschata (Rifu)carcmoB0705
Carg07032Lsi02G012160Bottle gourd (USVL1VR-Ls)carlsiB475
Carg07032Cp4.1LG20g07660Cucurbita pepo (Zucchini)carcpeB0737
Carg07032Cp4.1LG02g11120Cucurbita pepo (Zucchini)carcpeB0738
Carg07032CsGy1G004600Cucumber (Gy14) v2carcgybB0526
Carg07032MELO3C020490.2Melon (DHL92) v3.6.1carmedB0530
Carg07032CsaV3_1G004710Cucumber (Chinese Long) v3carcucB0555
Carg07032Cla97C03G050950Watermelon (97103) v2carwmbB0547
Carg07032Bhi08G000353Wax gourdcarwgoB0632
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg07032Carg26956Silver-seed gourdcarcarB350
The following block(s) are covering this gene:
GeneOrganismBlock
Carg07032Cucumber (Gy14) v2carcgybB0525
Carg07032Cucumber (Gy14) v1carcgyB0602
Carg07032Bottle gourd (USVL1VR-Ls)carlsiB472
Carg07032Melon (DHL92) v3.5.1carmeB0522
Carg07032Melon (DHL92) v3.6.1carmedB0528
Carg07032Watermelon (Charleston Gray)carwcgB0504
Carg07032Watermelon (97103) v1carwmB0515
Carg07032Watermelon (97103) v2carwmbB0544
Carg07032Watermelon (97103) v2carwmbB0545
Carg07032Wax gourdcarwgoB0630