CmaCh13G000270 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh13G000270
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionU2 small nuclear ribonucleoprotein B
LocationCma_Chr13 : 367630 .. 370630 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGATGAACGCGAGGTTTCGGGTTTCGCCGGACTCTGAAGTGCGCGCCCACTGCCAACAGCCTAACACGGCGCCAAGTAGAGATGGGGTAAAAGTTGCTATTTTTATATGTTTCAGGGATAGAATGGTACTTTTGCAAGTTGAGAAAGGCCTCAGCCCAATGAAATTGTGATTCTTGTTAGGCCATTTAGGCCTCAGCCCAAGGAAACTTTGAAGTACGATCTAGAGCCTTTTGCTTGATAGGGCTCTATTCTGCTTCCGACAAGTCTACTTCTTCCTGCTCATTCGAAAAACTAGATTTCTGTCCGTTGCTCCGTGATTCTCTGTAAGCCGAAGGCCCTGAACGTGAGTTCCATGTTATCGGGCGATATACCACCTAACCAGAGCATATACATCAAGAATCTCAATGAGGAGGTCAAGAAAGAAGGTGATTCACTCTTAGCTTTTTGCTTTACCCTACTCTATCCCCTGTGTAAATGTGATTTCTTCTTATCCATTAGTCGACAACGAATAATTGAAGTGATCTACGGGACATTTTAAGTTTTTCATTTCGCCTTCGGCTCTCAAAGTTCATGCCGCTGTAGGTTTCCCGGGGGGGGGGGGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTTGTATTTTGGCGAAGATTGGCTTGTTTTTATTGCAGTATTTGATATTTCTGATGATGTCACACAGTAATCACTCGAGAATGTACAACTATCATAGTTAGAATTTGGTTGTTAGGGTGAAGGAATTGATATCTTGAAATTTTAGTTTGAATTTGGAGACGGCTACTTGCTTTACCCATTCCCGTAGCATATGGTATTTTGATTACTGCTTCGGTTGCTTAGTTACTACCGATATTACATCACATATGTGGAGTGGGTGATTTGAATTTACGTCCTCTTAGTGTTCAGATTTGATGGTATACTAATTTTATTCCCCTTGGACAGAATTGAAGAGATCCCTTTATGCTTTGTTTTCTCAATATGGAAGGATTCTCGACGTTGTTGCCTTGAAGACACCGAGGCTTCGAGGGCAGGCATGGGTTGCATTTAGTGAAGTGACTGCAGCTAGCAATGCTGTGCGGCAGATGAAAAACTTCCCATTCTATGATAAACCTATGGTTGATCTTTAGCTGATCACATTTTCTGAACTTGCTTTTCATAGTCTTTTTGTGGCATTTCATCCACTGAATCCTGATTGTGCTTCAATGAGTGTTGCATGGAGAGCGGTCTCTATACATAATAACACTCAATATTTTGCCAGTTTAGATGCCTTGCATGCCCTAAATAATGTTTTAACCTTTTGGACATATGCGTCTGTCTATTGGCTATGTGCCTTTTTTGAGCATTTTGAGGTCTCTCTGTGTAAATCCTGTATGTTAACATTTCTTCTGTCAACGAGGGCCATCTATCATGAATTACATGCTTATGTACTACTTTAAATTTTGCCACTGAATATTTGATCTCTGTTGTAATTTGATCAAAAGGAATTCTTCTCATTTTTCTAACTTGGGTATAATAAAAGGCTCAGAGGAAATGAGTTCAATCCGTGATGGTCACCTACCTAGGAAATATCCTACGAGTTTTCTTGGCACCCAAAATGTTATAGAGTTAGATGAGGTAAGTTGAGGTGCATGCAAGCTAGGCTGCACACTCATAGATATCAAAAATGAAAAAAGAAAAAAAGAACACGACTGGAGATGTATTCACGATTCTTTTAGGAAGAAACAGGTTTTACTGTAATCTCTTTTAGTTTTAAACTTCAGTTATTTTTGTTTCATCTTGGAAATTTTTGTATCTTCATTTTGCTTATTCATACAACTTATTCTACTGGTTATTATCATGATGACTTTCTGTTGCCCATCTCAAAAATATAAAGATGACTTTCGTTGTTTCTTTTGCAGAGAATTCAATATGCCAAAACCAAATCAGATTGTATTGCTAAAACTGACGGAAGCTTTGTGCCAAGGGAGAAGAAAAAGAAGCTCGAGGAAAAAGGTGATTTTTACTAATATATGTACTCTTTGTTTTGAATTTTTTTGGTGGACATAATCTTTAAGTTAAACATATGGCTTTTTGAATTGGTTGACATAACCTCTCATTTTCTTATTGCATTGCTTTTAAAAGACCTTTAGGGTTTTAAACTGATTTATGTTTCCTATTATCTCTTAATTTGCTTATCCAGCTGAAAGAAAGCAACGCACTGAAGATGCACACCAATCTGCCATGCCCAATGGAACAACTGCTGAGACTGGTGGTTCAAATGTGTGTTTCTTTTCACTCTTGTTTTATTTTTTGTGATGTAAGATGTTTAGTTTCCTTCTTGATATGAGCTGTTTCTTTTTATTGTTACTCTAGAAGTGGTCCCAAGCATAAGTTGTATGGGTCTTTTTAGATGGTGTGGTTTGTTGGTTGATTGTTTTTTTCCTTGCATTTGTTGGAAAGACATTAATGTTTATTCGAATTGGATTCAATTCAGTGCCCCCTTAGATCAGCAACGTTAACCAACATATTCATAATCAGTTTTTCTAAGCGAGCCTCTTCGTTGTGTCATTCATGTAGGCCACATTTCGTCACGCAAATCCTAGCACTGCAGAAGCTACTCCAAACAACATACTATTTATTGAGAATTTACCACATGAAACCTCTAGTATCATGTTGCAAGTTCTCTTCCAACAATATCCTGGATTCAGGGAGGTTCGAATGATTGAAGTGAAGCCGGGTATTGCTTTTGTTGAGTTTGAAGATGATGTTCAATCCTCTATGGCGATGCAGGCTCTTCAAGGCTTTAAAATTGACCCCCAACATCCCATGGCTATCTCTTTTGCAAAGAAGTAA

mRNA sequence

ATGATGATGAACGCGAGGTTTCGGGTTTCGCCGGACTCTGAAGTGCGCGCCCACTGCCAACAGCCTAACACGGCGCCAAGTAGAGATGGGATTTCTGTCCGTTGCTCCGTGATTCTCTGTAAGCCGAAGGCCCTGAACGTGAGTTCCATGTTATCGGGCGATATACCACCTAACCAGAGCATATACATCAAGAATCTCAATGAGGAGGTCAAGAAAGAAGAATTGAAGAGATCCCTTTATGCTTTGTTTTCTCAATATGGAAGGATTCTCGACGTTGTTGCCTTGAAGACACCGAGGCTTCGAGGGCAGGCATGGGTTGCATTTAGTGAAGTGACTGCAGCTAGCAATGCTGTGCGGCAGATGAAAAACTTCCCATTCTATGATAAACCTATGAGAATTCAATATGCCAAAACCAAATCAGATTGTATTGCTAAAACTGACGGAAGCTTTGTGCCAAGGGAGAAGAAAAAGAAGCTCGAGGAAAAAGCTGAAAGAAAGCAACGCACTGAAGATGCACACCAATCTGCCATGCCCAATGGAACAACTGCTGAGACTGGTGGTTCAAATGCCACATTTCGTCACGCAAATCCTAGCACTGCAGAAGCTACTCCAAACAACATACTATTTATTGAGAATTTACCACATGAAACCTCTAGTATCATGTTGCAAGTTCTCTTCCAACAATATCCTGGATTCAGGGAGGTTCGAATGATTGAAGTGAAGCCGGGTATTGCTTTTGTTGAGTTTGAAGATGATGTTCAATCCTCTATGGCGATGCAGGCTCTTCAAGGCTTTAAAATTGACCCCCAACATCCCATGGCTATCTCTTTTGCAAAGAAGTAA

Coding sequence (CDS)

ATGATGATGAACGCGAGGTTTCGGGTTTCGCCGGACTCTGAAGTGCGCGCCCACTGCCAACAGCCTAACACGGCGCCAAGTAGAGATGGGATTTCTGTCCGTTGCTCCGTGATTCTCTGTAAGCCGAAGGCCCTGAACGTGAGTTCCATGTTATCGGGCGATATACCACCTAACCAGAGCATATACATCAAGAATCTCAATGAGGAGGTCAAGAAAGAAGAATTGAAGAGATCCCTTTATGCTTTGTTTTCTCAATATGGAAGGATTCTCGACGTTGTTGCCTTGAAGACACCGAGGCTTCGAGGGCAGGCATGGGTTGCATTTAGTGAAGTGACTGCAGCTAGCAATGCTGTGCGGCAGATGAAAAACTTCCCATTCTATGATAAACCTATGAGAATTCAATATGCCAAAACCAAATCAGATTGTATTGCTAAAACTGACGGAAGCTTTGTGCCAAGGGAGAAGAAAAAGAAGCTCGAGGAAAAAGCTGAAAGAAAGCAACGCACTGAAGATGCACACCAATCTGCCATGCCCAATGGAACAACTGCTGAGACTGGTGGTTCAAATGCCACATTTCGTCACGCAAATCCTAGCACTGCAGAAGCTACTCCAAACAACATACTATTTATTGAGAATTTACCACATGAAACCTCTAGTATCATGTTGCAAGTTCTCTTCCAACAATATCCTGGATTCAGGGAGGTTCGAATGATTGAAGTGAAGCCGGGTATTGCTTTTGTTGAGTTTGAAGATGATGTTCAATCCTCTATGGCGATGCAGGCTCTTCAAGGCTTTAAAATTGACCCCCAACATCCCATGGCTATCTCTTTTGCAAAGAAGTAA

Protein sequence

MMMNARFRVSPDSEVRAHCQQPNTAPSRDGISVRCSVILCKPKALNVSSMLSGDIPPNQSIYIKNLNEEVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMKNFPFYDKPMRIQYAKTKSDCIAKTDGSFVPREKKKKLEEKAERKQRTEDAHQSAMPNGTTAETGGSNATFRHANPSTAEATPNNILFIENLPHETSSIMLQVLFQQYPGFREVRMIEVKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Homology
[Close]
BLAST of CmaCh13G000270 vs. Swiss-Prot
Match: RU2B2_ARATH (U2 small nuclear ribonucleoprotein B'' 2 OS=Arabidopsis thaliana GN=At1g06960 PE=1 SV=1)

HSP 1 Score: 331.3 bits (848), Expect = 1.1e-89
Identity = 167/231 (72.29%), Postives = 196/231 (84.85%), Query Frame = 1 

Query: 50  MLSGDIPPNQSIYIKNLNEEVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 109
           ML+ DIPPNQSIYIK++NE++KKEELKRSLY LFSQ+GR+LDVVALKTP+LRGQAWV F+
Sbjct: 1   MLTADIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFT 60

Query: 110 EVTAASNAVRQMKNFPFYDKPMRIQYAKTKSDCIAKTDGSFVPREKKKKLEEKAERKQRT 169
           EVTAASNAVRQM+NFPFYDKPMRIQYAK+KSD + K +GSFVP+EKK K EEK ERK+  
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHA 120

Query: 170 EDAHQSAMPNGTTAETGGSNATFRHANPSTAEATPNNILFIENLPHETSSIMLQVLFQQY 229
           E+  Q +MPNG T + G     F+ +   T    PNNILFI NLP ET+S+MLQ+LF+QY
Sbjct: 121 EETQQPSMPNGATTQNGMPVPPFQPSGQDT--MPPNNILFIHNLPIETNSMMLQLLFEQY 180

Query: 230 PGFREVRMIEVKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 281
           PGF+E+RMIE KPGIAFVE+EDDVQSSMAMQALQGFKI PQ+PM +SFAKK
Sbjct: 181 PGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 229

[Close]
BLAST of CmaCh13G000270 vs. Swiss-Prot
Match: RU2B1_ARATH (U2 small nuclear ribonucleoprotein B'' OS=Arabidopsis thaliana GN=U2B'' PE=1 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 9.2e-86
Identity = 162/234 (69.23%), Postives = 194/234 (82.91%), Query Frame = 1 

Query: 50  MLSGDIPPNQSIYIKNLNEEVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 109
           ML+ DIPPNQSIYI+NLNE +KKEELKRSLY LFSQ+GRILDVVALKTP+LRGQAWV FS
Sbjct: 1   MLTADIPPNQSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFS 60

Query: 110 EVTAASNAVRQMKNFPFYDKPMRIQYAKTKSDCIAKTDGSFVPREKKKKLEEKAERKQRT 169
           EVTAA +AVRQM+NFPFYDKPMR+QYAK KSDC+AK +G+FVP++KK+K EEK ERK+  
Sbjct: 61  EVTAAGHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKQEEKVERKRED 120

Query: 170 EDAHQSA---MPNGTTAETGGSNATFRHANPSTAEATPNNILFIENLPHETSSIMLQVLF 229
                +A     NG +A  G    +F+ +   T    PNNILFI+NLPHET+S+MLQ+LF
Sbjct: 121 SQRPNTANGPSANGPSANNGVPAPSFQPSGQET--MPPNNILFIQNLPHETTSMMLQLLF 180

Query: 230 QQYPGFREVRMIEVKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 281
           +QYPGF+E+RMI+ KPGIAFVE+EDDVQ+S+AMQ LQGFKI PQ+PM ISFAKK
Sbjct: 181 EQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQGFKITPQNPMVISFAKK 232

[Close]
BLAST of CmaCh13G000270 vs. Swiss-Prot
Match: RU2B_ORYSI (U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. indica GN=OsI_11177 PE=3 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 4.7e-82
Identity = 163/233 (69.96%), Postives = 189/233 (81.12%), Query Frame = 1 

Query: 50  MLSGDIPPNQSIYIKNLNEEVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 109
           MLSGDIPPNQ++Y++NLNE+VKKEELKRSLYAL SQYGRILDVVALKTP+LRGQAWV FS
Sbjct: 1   MLSGDIPPNQTVYLRNLNEKVKKEELKRSLYALCSQYGRILDVVALKTPKLRGQAWVVFS 60

Query: 110 EVTAASNAVRQMKNFPFYDKPMRIQYAKTKSDCIAKTDGSFVPREKKKKLEEK-AERKQR 169
           E+TAA+NA R ++ F FY K MR+QYAKTKSDC+A  DGS  P+EK+KK EEK AE+K+R
Sbjct: 61  EITAATNAFRGLQEFDFYGKRMRVQYAKTKSDCLATEDGSTAPKEKRKKQEEKAAEKKRR 120

Query: 170 TEDAHQSAMPNGTTAETG-GSNATFRHANPSTAEATPNNILFIENLPHETSSIMLQVLFQ 229
            E+A QS  PN      G G  A+          A PNNILFI+NLP ET+S+MLQ+LFQ
Sbjct: 121 AEEAQQSG-PNAAAQSNGTGYQASRLGKTSQEPPAPPNNILFIQNLPAETTSMMLQILFQ 180

Query: 230 QYPGFREVRMIEVKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 281
           QYPGFREVRMIE KPGIAFVE+EDD QS +AMQALQGFKI P +PMAIS+AKK
Sbjct: 181 QYPGFREVRMIEAKPGIAFVEYEDDSQSMVAMQALQGFKITPYNPMAISYAKK 232

[Close]
BLAST of CmaCh13G000270 vs. Swiss-Prot
Match: RU2B_ORYSJ (U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. japonica GN=Os03g0298800 PE=2 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 1.1e-81
Identity = 162/233 (69.53%), Postives = 189/233 (81.12%), Query Frame = 1 

Query: 50  MLSGDIPPNQSIYIKNLNEEVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 109
           MLSGDIPPNQ++Y++NLNE+VKKEELKRSLYAL SQYGRILDVVALKTP+LRGQAWV FS
Sbjct: 1   MLSGDIPPNQTVYLRNLNEKVKKEELKRSLYALCSQYGRILDVVALKTPKLRGQAWVVFS 60

Query: 110 EVTAASNAVRQMKNFPFYDKPMRIQYAKTKSDCIAKTDGSFVPREKKKKLEEK-AERKQR 169
           E+TAA+NA R ++ F FY K MR+QYAKT+SDC+A  DGS  P+EK+KK EEK AE+K+R
Sbjct: 61  EITAATNAFRGLQEFDFYGKRMRVQYAKTRSDCLATEDGSTAPKEKRKKQEEKAAEKKRR 120

Query: 170 TEDAHQSAMPNGTTAETG-GSNATFRHANPSTAEATPNNILFIENLPHETSSIMLQVLFQ 229
            E+A QS  PN      G G  A+          A PNNILFI+NLP ET+S+MLQ+LFQ
Sbjct: 121 AEEAQQSG-PNAAAQSNGTGYQASRLGKTSQEPPAPPNNILFIQNLPAETTSMMLQILFQ 180

Query: 230 QYPGFREVRMIEVKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 281
           QYPGFREVRMIE KPGIAFVE+EDD QS +AMQALQGFKI P +PMAIS+AKK
Sbjct: 181 QYPGFREVRMIEAKPGIAFVEYEDDSQSMVAMQALQGFKITPYNPMAISYAKK 232

[Close]
BLAST of CmaCh13G000270 vs. Swiss-Prot
Match: RU1A_ORYSJ (U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. japonica GN=Os05g0154800 PE=3 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 3.8e-63
Identity = 130/234 (55.56%), Postives = 170/234 (72.65%), Query Frame = 1 

Query: 56  PPNQSIYIKNLNEEVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAAS 115
           PPN +IYI NLNE++K EELK+SL A+FSQ+G+ILDV+A KT + +GQAWV F +V +A+
Sbjct: 20  PPNVTIYINNLNEKIKLEELKKSLRAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASAT 79

Query: 116 NAVRQMKNFPFYDKPMRIQYAKTKSDCIAKTDGSFVPREKKKKLEEKAERKQRTEDAHQ- 175
            A++ M++FPF++KPMRIQYAKTKSD IAK DG+FVPRE++K+ +EK E+KQ+ E  H  
Sbjct: 80  EALKSMQDFPFHNKPMRIQYAKTKSDIIAKADGTFVPRERRKRNDEKPEKKQKREQHHDV 139

Query: 176 SAMPNGTTAETGGSNATFRHANPSTAE--------ATPNNILFIENLPHETSSIMLQVLF 235
           S +  G  A  G   A      P              PNNILF++NLPHET+ +MLQ+LF
Sbjct: 140 SQVGLGVNAYPGVYGAPPLSQLPFAGAQKVMMPEIIVPNNILFVQNLPHETTPMMLQMLF 199

Query: 236 QQYPGFREVRMIEVKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 281
            QYPGF+EVRM+E KPGIAFVE+ D+ Q++ AM  LQGFKI   + M IS+AKK
Sbjct: 200 CQYPGFKEVRMVEAKPGIAFVEYGDEGQATAAMNHLQGFKITKDNQMLISYAKK 253

[Close]
BLAST of CmaCh13G000270 vs. TrEMBL
Match: A0A0A0LPT7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025950 PE=4 SV=1)

HSP 1 Score: 422.5 bits (1085), Expect = 3.9e-115
Identity = 214/231 (92.64%), Postives = 222/231 (96.10%), Query Frame = 1 

Query: 50  MLSGDIPPNQSIYIKNLNEEVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 109
           MLSGDIPPNQ+IYIKNLNE+VKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 110 EVTAASNAVRQMKNFPFYDKPMRIQYAKTKSDCIAKTDGSFVPREKKKKLEEKAERKQRT 169
           EVTAASNAVRQM+NFPFY+KPMRIQYAKTKSDCIAK DGSFVPREKKKK EEKAE+K+R 
Sbjct: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPREKKKKQEEKAEKKRRA 120

Query: 170 EDAHQSAMPNGTTAETGGSNATFRHANPSTAEATPNNILFIENLPHETSSIMLQVLFQQY 229
           E+ HQSAMPNGTT E GGSNATFRHANPS  EATPNNILFIENLPHETSS+MLQVLFQQY
Sbjct: 121 EETHQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 230 PGFREVRMIEVKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 281
           PGFREVRMIE KPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]
BLAST of CmaCh13G000270 vs. TrEMBL
Match: D7SJN7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g07530 PE=4 SV=1)

HSP 1 Score: 367.5 bits (942), Expect = 1.5e-98
Identity = 190/234 (81.20%), Postives = 207/234 (88.46%), Query Frame = 1 

Query: 50  MLSGDIPPNQSIYIKNLNEEVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 109
           MLSGDIPPNQSIYIKNLNE+VKKEELKRSLY LFSQYGRILDVVALKTP+LRGQAWV FS
Sbjct: 1   MLSGDIPPNQSIYIKNLNEKVKKEELKRSLYCLFSQYGRILDVVALKTPKLRGQAWVVFS 60

Query: 110 EVTAASNAVRQMKNFPFYDKPMRIQYAKTKSDCIAKTDGSFVPREKKKKLEEKAERKQRT 169
           EVTAASNAVRQM+NFPFYDKPMR+QYAKTKSDC+AK DG+FVPREKKKK EEKAE+K+R 
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRVQYAKTKSDCVAKADGTFVPREKKKKQEEKAEKKRRA 120

Query: 170 EDAHQSAMPNGTTAET-GGSNATFRHANPST--AEATPNNILFIENLPHETSSIMLQVLF 229
           E+A QS   NG  AET GG    FR  N      EA PNNILFI+NLPH+T+S+MLQVLF
Sbjct: 121 EEAQQSGNANGRNAETNGGPTPPFRQGNQGAREPEAAPNNILFIQNLPHQTTSMMLQVLF 180

Query: 230 QQYPGFREVRMIEVKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 281
           QQYPGFREVRMIE KPGIAFVEFEDDVQSSMAM+ALQGFKI PQ+PMAI++AKK
Sbjct: 181 QQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMEALQGFKITPQNPMAIAYAKK 234

[Close]
BLAST of CmaCh13G000270 vs. TrEMBL
Match: A0A067DUK7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g026902mg PE=4 SV=1)

HSP 1 Score: 367.1 bits (941), Expect = 1.9e-98
Identity = 188/232 (81.03%), Postives = 213/232 (91.81%), Query Frame = 1 

Query: 50  MLSGDIPPNQSIYIKNLNEEVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 109
           M++GDIPPNQ+IYIKNLNE++KKEELKRSLY LFSQYGRI DVVALKTP+LRGQAWV FS
Sbjct: 1   MITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60

Query: 110 EVTAASNAVRQMKNFPFYDKPMRIQYAKTKSDCIAKTDGSFVPREKKKKLEEKAERKQRT 169
           EVTAASNAVRQM+NFPFYDKPMRIQYAK+KSDC+AK DGSFVPREKKKK EEKAERK+R 
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRA 120

Query: 170 EDAHQSAMPNGTTAET-GGSNATFRHANPSTAEATPNNILFIENLPHETSSIMLQVLFQQ 229
           E+A QS+M NGT A++ GG+ A+FR+AN +   A PNNILFI+NLPHET+S ML++LFQQ
Sbjct: 121 EEAQQSSMANGTGAQSNGGTAASFRNAN-TQETAAPNNILFIQNLPHETTSSMLEMLFQQ 180

Query: 230 YPGFREVRMIEVKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 281
           YPGF+EVRMIE KPGIAFVEFEDDVQSSMAMQALQGFKI PQ+PMAI+FAKK
Sbjct: 181 YPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231

[Close]
BLAST of CmaCh13G000270 vs. TrEMBL
Match: V4T1I4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002361mg PE=4 SV=1)

HSP 1 Score: 366.7 bits (940), Expect = 2.5e-98
Identity = 189/232 (81.47%), Postives = 212/232 (91.38%), Query Frame = 1 

Query: 50  MLSGDIPPNQSIYIKNLNEEVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 109
           M++GDIPPNQ+IYIKNLNE++KKEELKRSLY LFSQYGRI DVVALKTP+LRGQAWV FS
Sbjct: 1   MITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60

Query: 110 EVTAASNAVRQMKNFPFYDKPMRIQYAKTKSDCIAKTDGSFVPREKKKKLEEKAERKQRT 169
           EVTAASNAVRQM+NFPFYDKPMRIQYAK+KSDCIAK DGSFVPREKKKK EEKAERK+R 
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCIAKEDGSFVPREKKKKQEEKAERKRRA 120

Query: 170 EDAHQSAMPNGTTAET-GGSNATFRHANPSTAEATPNNILFIENLPHETSSIMLQVLFQQ 229
           E+A QS+M NGT A++  G+ A+FR+AN   A A PNNILFI+NLPHET+S ML++LFQQ
Sbjct: 121 EEAQQSSMANGTGAQSNSGTAASFRNANTQEA-AAPNNILFIQNLPHETTSSMLEMLFQQ 180

Query: 230 YPGFREVRMIEVKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 281
           YPGF+EVRMIE KPGIAFVEFEDDVQSSMAMQALQGFKI PQ+PMAI+FAKK
Sbjct: 181 YPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231

[Close]
BLAST of CmaCh13G000270 vs. TrEMBL
Match: A0A0D2MP29_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G150900 PE=4 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 1.2e-95
Identity = 181/232 (78.02%), Postives = 204/232 (87.93%), Query Frame = 1 

Query: 50  MLSGDIPPNQSIYIKNLNEEVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 109
           ML+ DIPPNQ+IYIKNLNE++KKEELKRSLYALFSQYGRILDVVALKTP+LRGQAWV F 
Sbjct: 1   MLTADIPPNQTIYIKNLNEKIKKEELKRSLYALFSQYGRILDVVALKTPKLRGQAWVVFD 60

Query: 110 EVTAASNAVRQMKNFPFYDKPMRIQYAKTKSDCIAKTDGSFVPREKKKKLEEKAERKQRT 169
           E+T+ASNA RQM+NFPFYDKPMRIQYAKTKSDCIAK DGSFVPREKKKK EEKAERK+R 
Sbjct: 61  ELTSASNAFRQMQNFPFYDKPMRIQYAKTKSDCIAKNDGSFVPREKKKKQEEKAERKRRA 120

Query: 170 EDAHQSAMPNGTTAE-TGGSNATFRHANPSTAEATPNNILFIENLPHETSSIMLQVLFQQ 229
           E+A QSA PNGT  +  GG  A   H N +  +A PNNILFI+NLPHET+S+MLQ+LF+Q
Sbjct: 121 EEAQQSAKPNGTGFQNNGGPKAPLHHGNLNAEQAAPNNILFIQNLPHETTSMMLQLLFEQ 180

Query: 230 YPGFREVRMIEVKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 281
           YPGFREVRM+E KPGIAFVE+ED+ QSS AMQ LQGFKI PQ+PMAI+FAKK
Sbjct: 181 YPGFREVRMVEAKPGIAFVEYEDEEQSSTAMQNLQGFKIAPQYPMAITFAKK 232

[Close]
BLAST of CmaCh13G000270 vs. TAIR10
Match: AT1G06960.1 (AT1G06960.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 331.3 bits (848), Expect = 5.9e-91
Identity = 167/231 (72.29%), Postives = 196/231 (84.85%), Query Frame = 1 

Query: 50  MLSGDIPPNQSIYIKNLNEEVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 109
           ML+ DIPPNQSIYIK++NE++KKEELKRSLY LFSQ+GR+LDVVALKTP+LRGQAWV F+
Sbjct: 1   MLTADIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFT 60

Query: 110 EVTAASNAVRQMKNFPFYDKPMRIQYAKTKSDCIAKTDGSFVPREKKKKLEEKAERKQRT 169
           EVTAASNAVRQM+NFPFYDKPMRIQYAK+KSD + K +GSFVP+EKK K EEK ERK+  
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHA 120

Query: 170 EDAHQSAMPNGTTAETGGSNATFRHANPSTAEATPNNILFIENLPHETSSIMLQVLFQQY 229
           E+  Q +MPNG T + G     F+ +   T    PNNILFI NLP ET+S+MLQ+LF+QY
Sbjct: 121 EETQQPSMPNGATTQNGMPVPPFQPSGQDT--MPPNNILFIHNLPIETNSMMLQLLFEQY 180

Query: 230 PGFREVRMIEVKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 281
           PGF+E+RMIE KPGIAFVE+EDDVQSSMAMQALQGFKI PQ+PM +SFAKK
Sbjct: 181 PGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 229

[Close]
BLAST of CmaCh13G000270 vs. TAIR10
Match: AT2G30260.1 (AT2G30260.1 U2 small nuclear ribonucleoprotein B)

HSP 1 Score: 318.2 bits (814), Expect = 5.2e-87
Identity = 162/234 (69.23%), Postives = 194/234 (82.91%), Query Frame = 1 

Query: 50  MLSGDIPPNQSIYIKNLNEEVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 109
           ML+ DIPPNQSIYI+NLNE +KKEELKRSLY LFSQ+GRILDVVALKTP+LRGQAWV FS
Sbjct: 1   MLTADIPPNQSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFS 60

Query: 110 EVTAASNAVRQMKNFPFYDKPMRIQYAKTKSDCIAKTDGSFVPREKKKKLEEKAERKQRT 169
           EVTAA +AVRQM+NFPFYDKPMR+QYAK KSDC+AK +G+FVP++KK+K EEK ERK+  
Sbjct: 61  EVTAAGHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKQEEKVERKRED 120

Query: 170 EDAHQSA---MPNGTTAETGGSNATFRHANPSTAEATPNNILFIENLPHETSSIMLQVLF 229
                +A     NG +A  G    +F+ +   T    PNNILFI+NLPHET+S+MLQ+LF
Sbjct: 121 SQRPNTANGPSANGPSANNGVPAPSFQPSGQET--MPPNNILFIQNLPHETTSMMLQLLF 180

Query: 230 QQYPGFREVRMIEVKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 281
           +QYPGF+E+RMI+ KPGIAFVE+EDDVQ+S+AMQ LQGFKI PQ+PM ISFAKK
Sbjct: 181 EQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQGFKITPQNPMVISFAKK 232

[Close]
BLAST of CmaCh13G000270 vs. TAIR10
Match: AT2G47580.1 (AT2G47580.1 spliceosomal protein U1A)

HSP 1 Score: 241.5 bits (615), Expect = 6.2e-64
Identity = 132/239 (55.23%), Postives = 171/239 (71.55%), Query Frame = 1 

Query: 54  DIPPNQSIYIKNLNEEVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTA 113
           ++ PNQ+IYI NLNE+VK +ELK+SL A+FSQ+G+IL+++A KT + +GQAWV F    +
Sbjct: 13  EVSPNQTIYINNLNEKVKLDELKKSLNAVFSQFGKILEILAFKTFKHKGQAWVVFDNTES 72

Query: 114 ASNAVRQMKNFPFYDKPMRIQYAKTKSDCIAKTDGSFVPREKKKKLEEKAERKQRTEDAH 173
           AS A+ +M NFPFYDK MRIQYAKTKSD +AK DG+FVPREK+K+ EEK   K++ +  H
Sbjct: 73  ASTAIAKMNNFPFYDKEMRIQYAKTKSDVVAKADGTFVPREKRKRHEEKGGGKKKKDQHH 132

Query: 174 ---------QSAMPNGTTAETGGSNATF---RHANPSTAEATPNNILFIENLPHETSSIM 233
                     SA P    A    S   +      N   A A PNNILF++NLPHET+ ++
Sbjct: 133 DSTQMGMPMNSAYPGVYGAAPPLSQVPYPGGMKPNMPEAPAPPNNILFVQNLPHETTPMV 192

Query: 234 LQVLFQQYPGFREVRMIEVKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 281
           LQ+LF QY GF+EVRMIE KPGIAFVEF D++QS++AMQ LQGFKI  Q+ M I++AKK
Sbjct: 193 LQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAMQGLQGFKIQ-QNQMLITYAKK 250

[Close]
BLAST of CmaCh13G000270 vs. NCBI nr
Match: gi|449439191|ref|XP_004137370.1| (PREDICTED: U2 small nuclear ribonucleoprotein B'' 2-like [Cucumis sativus])

HSP 1 Score: 422.5 bits (1085), Expect = 5.6e-115
Identity = 214/231 (92.64%), Postives = 222/231 (96.10%), Query Frame = 1 

Query: 50  MLSGDIPPNQSIYIKNLNEEVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 109
           MLSGDIPPNQ+IYIKNLNE+VKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 110 EVTAASNAVRQMKNFPFYDKPMRIQYAKTKSDCIAKTDGSFVPREKKKKLEEKAERKQRT 169
           EVTAASNAVRQM+NFPFY+KPMRIQYAKTKSDCIAK DGSFVPREKKKK EEKAE+K+R 
Sbjct: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPREKKKKQEEKAEKKRRA 120

Query: 170 EDAHQSAMPNGTTAETGGSNATFRHANPSTAEATPNNILFIENLPHETSSIMLQVLFQQY 229
           E+ HQSAMPNGTT E GGSNATFRHANPS  EATPNNILFIENLPHETSS+MLQVLFQQY
Sbjct: 121 EETHQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 230 PGFREVRMIEVKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 281
           PGFREVRMIE KPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]
BLAST of CmaCh13G000270 vs. NCBI nr
Match: gi|659114937|ref|XP_008457301.1| (PREDICTED: U2 small nuclear ribonucleoprotein B'' 2-like [Cucumis melo])

HSP 1 Score: 422.5 bits (1085), Expect = 5.6e-115
Identity = 213/231 (92.21%), Postives = 223/231 (96.54%), Query Frame = 1 

Query: 50  MLSGDIPPNQSIYIKNLNEEVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 109
           MLSGDIPPNQ+IYIKNLNE+VKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 110 EVTAASNAVRQMKNFPFYDKPMRIQYAKTKSDCIAKTDGSFVPREKKKKLEEKAERKQRT 169
           EVTAASNAVRQM+NFPFY+KPMRIQYAKTKSDC+AK DG+FVPREKKKK EEKAE+K+R 
Sbjct: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGTFVPREKKKKQEEKAEKKRRA 120

Query: 170 EDAHQSAMPNGTTAETGGSNATFRHANPSTAEATPNNILFIENLPHETSSIMLQVLFQQY 229
           E+AHQSAMPNGTT E GGSNATFRHANPS  EATPNNILFIENLPHETSS+MLQVLFQQY
Sbjct: 121 EEAHQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 230 PGFREVRMIEVKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 281
           PGFREVRMIE KPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]
BLAST of CmaCh13G000270 vs. NCBI nr
Match: gi|1009116350|ref|XP_015874724.1| (PREDICTED: U2 small nuclear ribonucleoprotein B'' 2-like [Ziziphus jujuba])

HSP 1 Score: 376.7 bits (966), Expect = 3.5e-101
Identity = 190/232 (81.90%), Postives = 217/232 (93.53%), Query Frame = 1 

Query: 50  MLSGDIPPNQSIYIKNLNEEVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 109
           ML+GDIPPNQ+IYIKNLNE++KKEELKRSLYALFSQYGRILDVVALKTP+LRGQAWVAFS
Sbjct: 1   MLTGDIPPNQTIYIKNLNEKIKKEELKRSLYALFSQYGRILDVVALKTPKLRGQAWVAFS 60

Query: 110 EVTAASNAVRQMKNFPFYDKPMRIQYAKTKSDCIAKTDGSFVPREKKKKLEEKAERKQRT 169
           EVTAASNAVRQM+NFPFYDKPMRIQYAKTKSDC+AK +GS+VPREKKKK EEKAERK+RT
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKAEGSYVPREKKKKQEEKAERKRRT 120

Query: 170 EDAHQSAMPNGTTAETGGSNATFRHANPSTAEAT-PNNILFIENLPHETSSIMLQVLFQQ 229
           E+  QS +PNGT+A+ G + A+FRH N S+ EA+ PNNILFIENLP ET+S+ML++LF+Q
Sbjct: 121 EETQQSTVPNGTSAQNGATAASFRHGNSSSQEASAPNNILFIENLPLETNSMMLELLFRQ 180

Query: 230 YPGFREVRMIEVKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 281
           YPGF+EVR+IE KPGIAFVEFEDDVQSSMAMQALQGFKI PQ+PMAI+FAKK
Sbjct: 181 YPGFKEVRIIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 232

[Close]
BLAST of CmaCh13G000270 vs. NCBI nr
Match: gi|225434417|ref|XP_002271864.1| (PREDICTED: U2 small nuclear ribonucleoprotein B'' 2 [Vitis vinifera])

HSP 1 Score: 367.5 bits (942), Expect = 2.1e-98
Identity = 190/234 (81.20%), Postives = 207/234 (88.46%), Query Frame = 1 

Query: 50  MLSGDIPPNQSIYIKNLNEEVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 109
           MLSGDIPPNQSIYIKNLNE+VKKEELKRSLY LFSQYGRILDVVALKTP+LRGQAWV FS
Sbjct: 1   MLSGDIPPNQSIYIKNLNEKVKKEELKRSLYCLFSQYGRILDVVALKTPKLRGQAWVVFS 60

Query: 110 EVTAASNAVRQMKNFPFYDKPMRIQYAKTKSDCIAKTDGSFVPREKKKKLEEKAERKQRT 169
           EVTAASNAVRQM+NFPFYDKPMR+QYAKTKSDC+AK DG+FVPREKKKK EEKAE+K+R 
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRVQYAKTKSDCVAKADGTFVPREKKKKQEEKAEKKRRA 120

Query: 170 EDAHQSAMPNGTTAET-GGSNATFRHANPST--AEATPNNILFIENLPHETSSIMLQVLF 229
           E+A QS   NG  AET GG    FR  N      EA PNNILFI+NLPH+T+S+MLQVLF
Sbjct: 121 EEAQQSGNANGRNAETNGGPTPPFRQGNQGAREPEAAPNNILFIQNLPHQTTSMMLQVLF 180

Query: 230 QQYPGFREVRMIEVKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 281
           QQYPGFREVRMIE KPGIAFVEFEDDVQSSMAM+ALQGFKI PQ+PMAI++AKK
Sbjct: 181 QQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMEALQGFKITPQNPMAIAYAKK 234

[Close]
BLAST of CmaCh13G000270 vs. NCBI nr
Match: gi|568827584|ref|XP_006468132.1| (PREDICTED: U2 small nuclear ribonucleoprotein B'' 2 [Citrus sinensis])

HSP 1 Score: 367.1 bits (941), Expect = 2.8e-98
Identity = 188/232 (81.03%), Postives = 213/232 (91.81%), Query Frame = 1 

Query: 50  MLSGDIPPNQSIYIKNLNEEVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 109
           M++GDIPPNQ+IYIKNLNE++KKEELKRSLY LFSQYGRI DVVALKTP+LRGQAWV FS
Sbjct: 1   MITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60

Query: 110 EVTAASNAVRQMKNFPFYDKPMRIQYAKTKSDCIAKTDGSFVPREKKKKLEEKAERKQRT 169
           EVTAASNAVRQM+NFPFYDKPMRIQYAK+KSDC+AK DGSFVPREKKKK EEKAERK+R 
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRA 120

Query: 170 EDAHQSAMPNGTTAET-GGSNATFRHANPSTAEATPNNILFIENLPHETSSIMLQVLFQQ 229
           E+A QS+M NGT A++ GG+ A+FR+AN +   A PNNILFI+NLPHET+S ML++LFQQ
Sbjct: 121 EEAQQSSMANGTGAQSNGGTAASFRNAN-TQETAAPNNILFIQNLPHETTSSMLEMLFQQ 180

Query: 230 YPGFREVRMIEVKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 281
           YPGF+EVRMIE KPGIAFVEFEDDVQSSMAMQALQGFKI PQ+PMAI+FAKK
Sbjct: 181 YPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231

The following BLAST results are available for this feature:
BLAST of CmaCh13G000270 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RU2B2_ARATH1.1e-8972.29U2 small nuclear ribonucleoprotein B'' 2 OS=Arabidopsis thaliana GN=At1g06960 PE... [more]
RU2B1_ARATH9.2e-8669.23U2 small nuclear ribonucleoprotein B'' OS=Arabidopsis thaliana GN=U2B'' PE=1 SV=... [more]
RU2B_ORYSI4.7e-8269.96U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. indica GN=OsI_1117... [more]
RU2B_ORYSJ1.1e-8169.53U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. japonica GN=Os03g0... [more]
RU1A_ORYSJ3.8e-6355.56U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. japonica GN=Os05g015... [more]
BLAST of CmaCh13G000270 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LPT7_CUCSA3.9e-11592.64Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025950 PE=4 SV=1[more]
D7SJN7_VITVI1.5e-9881.20Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g07530 PE=4 SV=... [more]
A0A067DUK7_CITSI1.9e-9881.03Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g026902mg PE=4 SV=1[more]
V4T1I4_9ROSI2.5e-9881.47Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002361mg PE=4 SV=1[more]
A0A0D2MP29_GOSRA1.2e-9578.02Uncharacterized protein OS=Gossypium raimondii GN=B456_003G150900 PE=4 SV=1[more]
BLAST of CmaCh13G000270 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G06960.15.9e-9172.29 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT2G30260.15.2e-8769.23 U2 small nuclear ribonucleoprotein B[more]
AT2G47580.16.2e-6455.23 spliceosomal protein U1A[more]
BLAST of CmaCh13G000270 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449439191|ref|XP_004137370.1|5.6e-11592.64PREDICTED: U2 small nuclear ribonucleoprotein B'' 2-like [Cucumis sativus][more]
gi|659114937|ref|XP_008457301.1|5.6e-11592.21PREDICTED: U2 small nuclear ribonucleoprotein B'' 2-like [Cucumis melo][more]
gi|1009116350|ref|XP_015874724.1|3.5e-10181.90PREDICTED: U2 small nuclear ribonucleoprotein B'' 2-like [Ziziphus jujuba][more]
gi|225434417|ref|XP_002271864.1|2.1e-9881.20PREDICTED: U2 small nuclear ribonucleoprotein B'' 2 [Vitis vinifera][more]
gi|568827584|ref|XP_006468132.1|2.8e-9881.03PREDICTED: U2 small nuclear ribonucleoprotein B'' 2 [Citrus sinensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR024888U1 small nuclear ribonucleoprotein A/U2 small nuclear ribonucleoprotein B''
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
GO:0017069snRNA binding
Vocabulary: Biological Process
TermDefinition
GO:0000398mRNA splicing, via spliceosome
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0008150 biological_process
cellular_component GO:0030529 intracellular ribonucleoprotein complex
cellular_component GO:0019013 viral nucleocapsid
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0005575 cellular_component
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0017069 snRNA binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh13G000270.1CmaCh13G000270.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 208..268
score: 1.7E-11coord: 61..131
score: 3.
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 60..134
score: 1.5E-11coord: 207..276
score: 2.7
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 206..280
score: 12.97coord: 59..138
score: 14
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 196..280
score: 6.3E-22coord: 56..141
score: 5.3
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 57..148
score: 4.55E-25coord: 203..270
score: 4.55
IPR024888U1 small nuclear ribonucleoprotein A/U2 small nuclear ribonucleoprotein B''PANTHERPTHR10501U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN Bcoord: 41..280
score: 3.4E
NoneNo IPR availableunknownCoilCoilcoord: 156..176
scor

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh13G000270Cla008105Watermelon (97103) v1cmawmB185
CmaCh13G000270MELO3C020490Melon (DHL92) v3.5.1cmameB194
CmaCh13G000270ClCG03G000140Watermelon (Charleston Gray)cmawcgB194
CmaCh13G000270CmoCh13G000160Cucurbita moschata (Rifu)cmacmoB218
CmaCh13G000270CmoCh01G007390Cucurbita moschata (Rifu)cmacmoB226
CmaCh13G000270Lsi02G012160Bottle gourd (USVL1VR-Ls)cmalsiB201
CmaCh13G000270Cp4.1LG02g11120Cucurbita pepo (Zucchini)cmacpeB239
CmaCh13G000270Cp4.1LG20g07660Cucurbita pepo (Zucchini)cmacpeB235
CmaCh13G000270MELO3C020490.2Melon (DHL92) v3.6.1cmamedB224
CmaCh13G000270Cla97C03G050950Watermelon (97103) v2cmawmbB225
CmaCh13G000270Bhi08G000353Wax gourdcmawgoB0277
CmaCh13G000270Carg26956Silver-seed gourdcarcmaB0462
CmaCh13G000270Carg07032Silver-seed gourdcarcmaB0728
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh13G000270CmaCh01G007120Cucurbita maxima (Rimu)cmacmaB220
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh13G000270Wax gourdcmawgoB0252
CmaCh13G000270Cucumber (Gy14) v1cgycmaB0418
CmaCh13G000270Wild cucumber (PI 183967)cmacpiB220
CmaCh13G000270Cucumber (Chinese Long) v2cmacuB219
CmaCh13G000270Melon (DHL92) v3.5.1cmameB202
CmaCh13G000270Watermelon (Charleston Gray)cmawcgB200
CmaCh13G000270Watermelon (97103) v1cmawmB191
CmaCh13G000270Bottle gourd (USVL1VR-Ls)cmalsiB209
CmaCh13G000270Cucumber (Gy14) v2cgybcmaB075
CmaCh13G000270Melon (DHL92) v3.6.1cmamedB215
CmaCh13G000270Cucumber (Chinese Long) v3cmacucB0250
CmaCh13G000270Watermelon (97103) v2cmawmbB231