ClCG03G000140 (gene) Watermelon (Charleston Gray)

Overview
NameClCG03G000140
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionU1 small nuclear ribonucleoprotein A
LocationCG_Chr03 : 182685 .. 186364 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTATCGGGGGATATACCGCCTAACCAGACCATATACATCAAGAATCTCAATGAGAAGGTCAAGAAAGAAGGTGACTCATTCTTAGCTTTTCGCTTAACCTTACTCTATTCCTTCCGTAAACGTCTTTTCTTCTGTTCGTTAAGTGTACAACTTAGTATAATTCAAGTGATCTCCGGCACATTTTATCTTTGTCATTTCGCCGTGGGCTCTCAAAATTCATGCTACTGTCGGTTTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGGGGGGGTTATTTTGGCGAAGGTCGGTTTGTTTTTGTTACATTATTTGATATTTCTGATGATGCCCAACTATCATAGTTGAAATTTTGTTTTTAGGGTGAAGGAGCTGCTAGCTTGAAATTTTAGTTTGGATTTGGAGACGGCTACTTGCTTTACCCGTTCCCGTAGCATTTGGGATTTTGCTTACTATTTTGGTTGCTTAGTGTTCAGTTTTTGACAATATTACATCACGTGTGGAGGGGAGGGGGTTATTTGAACCTACGTCCTTTTAGTGTTCAGATTTCGATGGTATACTAATTTTCTCCCCCTTGGACAGAGTTGAAGAGATCCCTTTATGCTTTGTTTTCTCAATATGGAAGGATCCTTGATGTTGTTGCCTTGAAGACACCGAGGCTTCGAGGGCAAGCATGGGTTGCATTTAGCGAAGTGACTGCAGCTAGCAATGCTGTGCGGCAGATGCAAAATTTCCCATTCTATGAAAAACCTATGGTTGGTCTTTAGCTGATCACATTTTCTGAACTTGCTTTTCATAGTCTTTTCATGGCCTTTCATCTATGGATTTTTCTAGTGCACTTTGAATTTTGTTGGGTAACTGTGGACAGTTCGCTTGTCAACGGGATTGGATCCTAATTGTGCTTCAATGAGTGTTATGTGGAGAGCGTCAAGTGAATATCTATACACAATCACACTCAATTATGCTCAATATTGTGCCAATTTAGCTGCTTCGCATGTCCGAAATAACGTCTTAATTTTGAGTAATTTCAATGGATAGAACTTTTAGGGGTAATAATTGTGTGAATACCAACATTTTTAAAGAATTGCAAATATAACAAAATTTATCAGTGATAGACTCTATCGTTGATAGACTGTTACCAACGATATGGGCTATCACTAATAGACTCTGAGAGTTGGATTTAAAATTTCCTATATCTGCAAATTTTTTTAAATTGTGTATATTTGCTTATACTTTGGACCTGATTTCTATATTTGGAACTGCCTCCTTAATTTTATTGGATATGTTGGTTTGTATATTGGTTATGTGCCTGATTTGAGCATTTTGAGATCTTTCTTTGTAACTCCAGTATATCGGACATCTCTTTTTTCAATGAATGTCATCTGTCATGAATTACAAAGCAGTGCTTAGAATGTTGTTGCCGTCAGATCTTCGGTCTTTATTGTAACTTGGACAAAGGGAGTTCATTTCTCCTTGTTCTAATGTGGGTATAATAAAGGGCCTAGAGGGAATAAGTTCAATCCATGATAGGGCACCTACTTGGGGTAATACCCTACGAGTTTTTTTTTGACATGTTGTAAGGTCAAATGGGTTATAGTCGAGATGTACACAAACTGACCCAAATACTTGCACATATCAAAAAAAGGAAAAAACAAACATGTCTGGAGATGTAACCATGATTCTGTTAGGAAGAAACAAGTTTACTATTATTTTTTTCCCTTTTAAATTTCACTCTTTTTTTTTTTGTTTCATCTTGGAACTTTGTGTACCATCTTCATCATACAACTTATTCTGATGTTTAATATGATGATGCCTTTCTGTTGACCATCTCAAAAATATAAAGTTGACTTTTGTTGTTTCTTTTGCAGAGAATTCAATATGCCAAAACCAAATCAGATTGTGTTGCTAAAGCTGACGGAAGCTTTGTGCCAAGGGAGAAGAAAAAGAAGCAAGAGGAAAAAGGTGATTGTAACTGTATATTATCTTTAAGTTAGTAGATCGACAGTATATTTTTACTATGGTTTTTTGAAATGGTTCACATAACCTCTCATTTTCTTATTGCATTGCTTTTGAAATATCTCAAGGGTTTTAAACTGGTTTATGTTCCTGATTATCTTATTATTTGCTTATCCAGCTGAAAAAAAGCGACGTGCTGAAGAAGCACACCAATCTGCGATGCCCAACGGAACAACTGCTGAGAATGGAGGTTCAAATGTAAGTTTATCTCCACCCTTATTTTATTTTTTGTGATGTAAAATGTTTGTTTTCCTTCTTCATATGAGCTGTATCGTATTAATTGTTTTCACGGGAAGTGGTCCCAAACATAAACTGTGTGAGTCTTGTTTGGATGGCGTGGTTCTCTGGTTAATTGTTTGTTTCTTCACATCTGTTAGAAAGTCATTGATGTCTATTCCAATTAGATTTCACCTTAGTGCCCCTTAGATCAGGCAATGTTAACCAACACTTTTCCATAATTATTTTTGCTAAGAAAGCCTCTTCGTTGTGTGTCATTTTTGCAGGCCACATTCCGTCATGCAAATCCAAGTGCTGCAGAAGCTACTCCAAACAACATACTATTTATTGAGAATTTGCCACATGAAACGTCTAGTATGATGTTGCAAGTCCTCTTCCAACAATATCCTGGATTCAGGGAAGTCCGGATGATTGAAGCAAAGCCGGGTATTGCTTTTGTTGAGTTTGAAGACGATGTTCAATCCTCCATGGCGATGCAGGCTCTTCAAGGCTTTAAAATTGACCCCCAACATCCCATGGCTATCTCTTTTGCAAAGAAGTAACTCGAGCTTTGTTCTACTGTTATCTTTTTGGAATGTGCAGCAGGTTTATGTTAACGTCACCGCACATAAATGAGTCGTGAGTTTTTATGTAAAGTTCAGATATTCTTCCCCTCCTTCCAACGCCATAAAAGAGAAAGAAATAAGAAAACATAGGGAGGTAGCCCACTGGTTCGGAAGAGGAGGATATCACACCAAGGGACTCGATGAGTTTTGCCGGCTGTGCTAATTCCAGTTTCCAGGGGTAGCAAGAGAAAGTTTTACGTTAGGTTGTCAAAAAGGAAACAGAAAGAACTAATCAAAGACTTTTTTTTTTTGTTTTTTTCTTTAAATGTGTTCATGTACTTGTTGTAGTAGTGGATAACTAGCTTTTGAAAAGAGAACGGGGAGCTGAAATTTCGGAGACAATGTTGATTAGACTTTTGCATGAATATTTTCGTCCTTGAACAATGAAGTGTTGATAATCATTTCTGTCA

mRNA sequence

ATGTTATCGGGGGATATACCGCCTAACCAGACCATATACATCAAGAATCTCAATGAGAAGGTCAAGAAAGAAGGTGACTCATTCTTAGCTTTTCGCTTAACCTTACTCTATTCCTTCCGTAAACGTCTTTTCTTCTGTTCGATCCTTGATGTTGTTGCCTTGAAGACACCGAGGCTTCGAGGGCAAGCATGGGTTGCATTTAGCGAAGTGACTGCAGCTAGCAATGCTGTGCGGCAGATGCAAAATTTCCCATTCTATGAAAAACCTATGAGAATTCAATATGCCAAAACCAAATCAGATTGTGTTGCTAAAGCTGACGGAAGCTTTGTGCCAAGGGAGAAGAAAAAGAAGCAAGAGGAAAAAGCTGAAAAAAAGCGACGTGCTGAAGAAGCACACCAATCTGCGATGCCCAACGGAACAACTGCTGAGAATGGAGGTTCAAATGCCACATTCCGTCATGCAAATCCAAGTGCTGCAGAAGCTACTCCAAACAACATACTATTTATTGAGAATTTGCCACATGAAACGTCTAGTATGATGTTGCAAGTCCTCTTCCAACAATATCCTGGATTCAGGGAAGTCCGGATGATTGAAGCAAAGCCGGGTATTGCTTTTGTTGAGTTTGAAGACGATGTTCAATCCTCCATGGCGATGCAGGCTCTTCAAGGCTTTAAAATTGACCCCCAACATCCCATGGCTATCTCTTTTGCAAAGAAGTAACTCGAGCTTTGTTCTACTGTTATCTTTTTGGAATGTGCAGCAGGTTTATGTTAACGTCACCGCACATAAATGAGTCGTGAGTTTTTATGTAAAGTTCAGATATTCTTCCCCTCCTTCCAACGCCATAAAAGAGAAAGAAATAAGAAAACATAGGGAGGTAGCCCACTGGTTCGGAAGAGGAGGATATCACACCAAGGGACTCGATGAGTTTTGCCGGCTGTGCTAATTCCAGTTTCCAGGGGTAGCAAGAGAAAGTTTTACGTTAGGTTGTCAAAAAGGAAACAGAAAGAACTAATCAAAGACTTTTTTTTTTTGTTTTTTTCTTTAAATGTGTTCATGTACTTGTTGTAGTAGTGGATAACTAGCTTTTGAAAAGAGAACGGGGAGCTGAAATTTCGGAGACAATGTTGATTAGACTTTTGCATGAATATTTTCGTCCTTGAACAATGAAGTGTTGATAATCATTTCTGTCA

Coding sequence (CDS)

ATGTTATCGGGGGATATACCGCCTAACCAGACCATATACATCAAGAATCTCAATGAGAAGGTCAAGAAAGAAGGTGACTCATTCTTAGCTTTTCGCTTAACCTTACTCTATTCCTTCCGTAAACGTCTTTTCTTCTGTTCGATCCTTGATGTTGTTGCCTTGAAGACACCGAGGCTTCGAGGGCAAGCATGGGTTGCATTTAGCGAAGTGACTGCAGCTAGCAATGCTGTGCGGCAGATGCAAAATTTCCCATTCTATGAAAAACCTATGAGAATTCAATATGCCAAAACCAAATCAGATTGTGTTGCTAAAGCTGACGGAAGCTTTGTGCCAAGGGAGAAGAAAAAGAAGCAAGAGGAAAAAGCTGAAAAAAAGCGACGTGCTGAAGAAGCACACCAATCTGCGATGCCCAACGGAACAACTGCTGAGAATGGAGGTTCAAATGCCACATTCCGTCATGCAAATCCAAGTGCTGCAGAAGCTACTCCAAACAACATACTATTTATTGAGAATTTGCCACATGAAACGTCTAGTATGATGTTGCAAGTCCTCTTCCAACAATATCCTGGATTCAGGGAAGTCCGGATGATTGAAGCAAAGCCGGGTATTGCTTTTGTTGAGTTTGAAGACGATGTTCAATCCTCCATGGCGATGCAGGCTCTTCAAGGCTTTAAAATTGACCCCCAACATCCCATGGCTATCTCTTTTGCAAAGAAGTAA

Protein sequence

MLSGDIPPNQTIYIKNLNEKVKKEGDSFLAFRLTLLYSFRKRLFFCSILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAEKKRRAEEAHQSAMPNGTTAENGGSNATFRHANPSAAEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Homology
[Close]
BLAST of ClCG03G000140 vs. Swiss-Prot
Match: RU2B2_ARATH (U2 small nuclear ribonucleoprotein B'' 2 OS=Arabidopsis thaliana GN=At1g06960 PE=1 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 2.7e-86
Identity = 168/240 (70.00%), Postives = 192/240 (80.00%), Query Frame = 1 

Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEGDSFLAFRLTLLYSFRKRLFFCSILDVVALKTPRLR 60
           ML+ DIPPNQ+IYIK++NEK+KKE    L   L  L+S      F  +LDVVALKTP+LR
Sbjct: 1   MLTADIPPNQSIYIKHINEKIKKEE---LKRSLYCLFSQ-----FGRLLDVVALKTPKLR 60

Query: 61  GQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEE 120
           GQAWV F+EVTAASNAVRQMQNFPFY+KPMRIQYAK+KSD V KA+GSFVP+EKK KQEE
Sbjct: 61  GQAWVVFTEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEE 120

Query: 121 KAEKKRRAEEAHQSAMPNGTTAENGGSNATFRHANPSAAEA-TPNNILFIENLPHETSSM 180
           K E+KR AEE  Q +MPNG T +NG     F+   PS  +   PNNILFI NLP ET+SM
Sbjct: 121 KVERKRHAEETQQPSMPNGATTQNGMPVPPFQ---PSGQDTMPPNNILFIHNLPIETNSM 180

Query: 181 MLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 240
           MLQ+LF+QYPGF+E+RMIEAKPGIAFVE+EDDVQSSMAMQALQGFKI PQ+PM +SFAKK
Sbjct: 181 MLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 229

[Close]
BLAST of ClCG03G000140 vs. Swiss-Prot
Match: RU2B1_ARATH (U2 small nuclear ribonucleoprotein B'' OS=Arabidopsis thaliana GN=U2B'' PE=1 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 1.5e-81
Identity = 160/243 (65.84%), Postives = 191/243 (78.60%), Query Frame = 1 

Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEGDSFLAFRLTLLYSFRKRLFFCSILDVVALKTPRLR 60
           ML+ DIPPNQ+IYI+NLNE++KKE    L   L  L+S      F  ILDVVALKTP+LR
Sbjct: 1   MLTADIPPNQSIYIQNLNERIKKEE---LKRSLYCLFSQ-----FGRILDVVALKTPKLR 60

Query: 61  GQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEE 120
           GQAWV FSEVTAA +AVRQMQNFPFY+KPMR+QYAK KSDC+AKA+G+FVP++KK+KQEE
Sbjct: 61  GQAWVTFSEVTAAGHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKQEE 120

Query: 121 KAEKKRRAEEAHQSA---MPNGTTAENGGSNATFRHANPSAAEA-TPNNILFIENLPHET 180
           K E+KR   +   +A     NG +A NG    +F+   PS  E   PNNILFI+NLPHET
Sbjct: 121 KVERKREDSQRPNTANGPSANGPSANNGVPAPSFQ---PSGQETMPPNNILFIQNLPHET 180

Query: 181 SSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISF 240
           +SMMLQ+LF+QYPGF+E+RMI+AKPGIAFVE+EDDVQ+S+AMQ LQGFKI PQ+PM ISF
Sbjct: 181 TSMMLQLLFEQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQGFKITPQNPMVISF 232

[Close]
BLAST of ClCG03G000140 vs. Swiss-Prot
Match: RU2B_ORYSI (U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. indica GN=OsI_11177 PE=3 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 5.0e-80
Identity = 162/241 (67.22%), Postives = 180/241 (74.69%), Query Frame = 1 

Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEGDSFLAFRLTLLYSFRKRLFFCSILDVVALKTPRLR 60
           MLSGDIPPNQT+Y++NLNEKVKKE      + L   Y          ILDVVALKTP+LR
Sbjct: 1   MLSGDIPPNQTVYLRNLNEKVKKEELKRSLYALCSQYG--------RILDVVALKTPKLR 60

Query: 61  GQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEE 120
           GQAWV FSE+TAA+NA R +Q F FY K MR+QYAKTKSDC+A  DGS  P+EK+KKQEE
Sbjct: 61  GQAWVVFSEITAATNAFRGLQEFDFYGKRMRVQYAKTKSDCLATEDGSTAPKEKRKKQEE 120

Query: 121 K-AEKKRRAEEAHQSAMPNGTTAENG-GSNATFRHANPSAAEATPNNILFIENLPHETSS 180
           K AEKKRRAEEA QS  PN     NG G  A+          A PNNILFI+NLP ET+S
Sbjct: 121 KAAEKKRRAEEAQQSG-PNAAAQSNGTGYQASRLGKTSQEPPAPPNNILFIQNLPAETTS 180

Query: 181 MMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAK 240
           MMLQ+LFQQYPGFREVRMIEAKPGIAFVE+EDD QS +AMQALQGFKI P +PMAIS+AK
Sbjct: 181 MMLQILFQQYPGFREVRMIEAKPGIAFVEYEDDSQSMVAMQALQGFKITPYNPMAISYAK 232

[Close]
BLAST of ClCG03G000140 vs. Swiss-Prot
Match: RU2B_ORYSJ (U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. japonica GN=Os03g0298800 PE=2 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 1.1e-79
Identity = 161/241 (66.80%), Postives = 180/241 (74.69%), Query Frame = 1 

Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEGDSFLAFRLTLLYSFRKRLFFCSILDVVALKTPRLR 60
           MLSGDIPPNQT+Y++NLNEKVKKE      + L   Y          ILDVVALKTP+LR
Sbjct: 1   MLSGDIPPNQTVYLRNLNEKVKKEELKRSLYALCSQYG--------RILDVVALKTPKLR 60

Query: 61  GQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEE 120
           GQAWV FSE+TAA+NA R +Q F FY K MR+QYAKT+SDC+A  DGS  P+EK+KKQEE
Sbjct: 61  GQAWVVFSEITAATNAFRGLQEFDFYGKRMRVQYAKTRSDCLATEDGSTAPKEKRKKQEE 120

Query: 121 K-AEKKRRAEEAHQSAMPNGTTAENG-GSNATFRHANPSAAEATPNNILFIENLPHETSS 180
           K AEKKRRAEEA QS  PN     NG G  A+          A PNNILFI+NLP ET+S
Sbjct: 121 KAAEKKRRAEEAQQSG-PNAAAQSNGTGYQASRLGKTSQEPPAPPNNILFIQNLPAETTS 180

Query: 181 MMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAK 240
           MMLQ+LFQQYPGFREVRMIEAKPGIAFVE+EDD QS +AMQALQGFKI P +PMAIS+AK
Sbjct: 181 MMLQILFQQYPGFREVRMIEAKPGIAFVEYEDDSQSMVAMQALQGFKITPYNPMAISYAK 232

[Close]
BLAST of ClCG03G000140 vs. Swiss-Prot
Match: RU1A_ORYSI (U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. indica GN=OsI_18512 PE=3 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 6.7e-61
Identity = 130/242 (53.72%), Postives = 163/242 (67.36%), Query Frame = 1 

Query: 7   PPNQTIYIKNLNEKVKKEGDSFLAFRLTLLYSFRKRLFFCSILDVVALKTPRLRGQAWVA 66
           PPN TIYI NLNEK+K E    L   L  ++S      F  ILDV+A KT + +GQAWV 
Sbjct: 20  PPNVTIYINNLNEKIKLEE---LKKSLRAVFSQ-----FGKILDVLAFKTLKHKGQAWVV 79

Query: 67  FSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAEKKR 126
           F +V +A+ A++ MQ+FPF+ KPMRIQYAKTKSD +AKADG+FVPRE++K+ +EK EKK+
Sbjct: 80  FEDVASATEALKSMQDFPFHNKPMRIQYAKTKSDIIAKADGTFVPRERRKRNDEKPEKKQ 139

Query: 127 RAEEAHQ-SAMPNGTTAENGGSNATFRHANPSAAE--------ATPNNILFIENLPHETS 186
           + E+ H  S +  G  A  G   A      P A            PNNILF++NLPHET+
Sbjct: 140 KREQHHDVSQVGLGVNAYPGVYGAPPLSQLPFAGAQKVMMPEIIVPNNILFVQNLPHETT 199

Query: 187 SMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFA 240
            MMLQ+LF QYPGF+EVRM+EAKPGIAFVE+ D+ Q++ AM  LQGFKI   + M IS+A
Sbjct: 200 PMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEGQATAAMNHLQGFKITKDNQMLISYA 253

[Close]
BLAST of ClCG03G000140 vs. TrEMBL
Match: A0A0A0LPT7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025950 PE=4 SV=1)

HSP 1 Score: 417.2 bits (1071), Expect = 1.4e-113
Identity = 217/239 (90.79%), Postives = 219/239 (91.63%), Query Frame = 1 

Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEGDSFLAFRLTLLYSFRKRLFFCSILDVVALKTPRLR 60
           MLSGDIPPNQTIYIKNLNEKVKKE    L   L  L+S   R     ILDVVALKTPRLR
Sbjct: 1   MLSGDIPPNQTIYIKNLNEKVKKEE---LKRSLYALFSQYGR-----ILDVVALKTPRLR 60

Query: 61  GQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEE 120
           GQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDC+AKADGSFVPREKKKKQEE
Sbjct: 61  GQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPREKKKKQEE 120

Query: 121 KAEKKRRAEEAHQSAMPNGTTAENGGSNATFRHANPSAAEATPNNILFIENLPHETSSMM 180
           KAEKKRRAEE HQSAMPNGTT ENGGSNATFRHANPSA EATPNNILFIENLPHETSSMM
Sbjct: 121 KAEKKRRAEETHQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMM 180

Query: 181 LQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 240
           LQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 LQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]
BLAST of ClCG03G000140 vs. TrEMBL
Match: D7SJN7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g07530 PE=4 SV=1)

HSP 1 Score: 357.1 bits (915), Expect = 1.7e-95
Identity = 191/242 (78.93%), Postives = 204/242 (84.30%), Query Frame = 1 

Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEGDSFLAFRLTLLYSFRKRLFFCSILDVVALKTPRLR 60
           MLSGDIPPNQ+IYIKNLNEKVKKE    L   L  L+S   R     ILDVVALKTP+LR
Sbjct: 1   MLSGDIPPNQSIYIKNLNEKVKKEE---LKRSLYCLFSQYGR-----ILDVVALKTPKLR 60

Query: 61  GQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEE 120
           GQAWV FSEVTAASNAVRQMQNFPFY+KPMR+QYAKTKSDCVAKADG+FVPREKKKKQEE
Sbjct: 61  GQAWVVFSEVTAASNAVRQMQNFPFYDKPMRVQYAKTKSDCVAKADGTFVPREKKKKQEE 120

Query: 121 KAEKKRRAEEAHQSAMPNGTTAE-NGGSNATFRHANPSA--AEATPNNILFIENLPHETS 180
           KAEKKRRAEEA QS   NG  AE NGG    FR  N  A   EA PNNILFI+NLPH+T+
Sbjct: 121 KAEKKRRAEEAQQSGNANGRNAETNGGPTPPFRQGNQGAREPEAAPNNILFIQNLPHQTT 180

Query: 181 SMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFA 240
           SMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAM+ALQGFKI PQ+PMAI++A
Sbjct: 181 SMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMEALQGFKITPQNPMAIAYA 234

[Close]
BLAST of ClCG03G000140 vs. TrEMBL
Match: A0A067DUK7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g026902mg PE=4 SV=1)

HSP 1 Score: 355.9 bits (912), Expect = 3.8e-95
Identity = 187/240 (77.92%), Postives = 209/240 (87.08%), Query Frame = 1 

Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEGDSFLAFRLTLLYSFRKRLFFCSILDVVALKTPRLR 60
           M++GDIPPNQTIYIKNLNEK+KKE    L   L  L+S   R+F     DVVALKTP+LR
Sbjct: 1   MITGDIPPNQTIYIKNLNEKIKKEE---LKRSLYCLFSQYGRIF-----DVVALKTPKLR 60

Query: 61  GQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEE 120
           GQAWV FSEVTAASNAVRQMQNFPFY+KPMRIQYAK+KSDCVAK DGSFVPREKKKKQEE
Sbjct: 61  GQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEE 120

Query: 121 KAEKKRRAEEAHQSAMPNGTTAE-NGGSNATFRHANPSAAEATPNNILFIENLPHETSSM 180
           KAE+KRRAEEA QS+M NGT A+ NGG+ A+FR+AN +   A PNNILFI+NLPHET+S 
Sbjct: 121 KAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNAN-TQETAAPNNILFIQNLPHETTSS 180

Query: 181 MLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 240
           ML++LFQQYPGF+EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKI PQ+PMAI+FAKK
Sbjct: 181 MLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231

[Close]
BLAST of ClCG03G000140 vs. TrEMBL
Match: V4T1I4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002361mg PE=4 SV=1)

HSP 1 Score: 354.8 bits (909), Expect = 8.5e-95
Identity = 186/240 (77.50%), Postives = 208/240 (86.67%), Query Frame = 1 

Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEGDSFLAFRLTLLYSFRKRLFFCSILDVVALKTPRLR 60
           M++GDIPPNQTIYIKNLNEK+KKE    L   L  L+S   R+F     DVVALKTP+LR
Sbjct: 1   MITGDIPPNQTIYIKNLNEKIKKEE---LKRSLYCLFSQYGRIF-----DVVALKTPKLR 60

Query: 61  GQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEE 120
           GQAWV FSEVTAASNAVRQMQNFPFY+KPMRIQYAK+KSDC+AK DGSFVPREKKKKQEE
Sbjct: 61  GQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCIAKEDGSFVPREKKKKQEE 120

Query: 121 KAEKKRRAEEAHQSAMPNGTTAE-NGGSNATFRHANPSAAEATPNNILFIENLPHETSSM 180
           KAE+KRRAEEA QS+M NGT A+ N G+ A+FR+AN   A A PNNILFI+NLPHET+S 
Sbjct: 121 KAERKRRAEEAQQSSMANGTGAQSNSGTAASFRNANTQEA-AAPNNILFIQNLPHETTSS 180

Query: 181 MLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 240
           ML++LFQQYPGF+EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKI PQ+PMAI+FAKK
Sbjct: 181 MLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231

[Close]
BLAST of ClCG03G000140 vs. TrEMBL
Match: A0A0D2MP29_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G150900 PE=4 SV=1)

HSP 1 Score: 345.1 bits (884), Expect = 6.7e-92
Identity = 179/240 (74.58%), Postives = 200/240 (83.33%), Query Frame = 1 

Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEGDSFLAFRLTLLYSFRKRLFFCSILDVVALKTPRLR 60
           ML+ DIPPNQTIYIKNLNEK+KKE    L   L  L+S   R     ILDVVALKTP+LR
Sbjct: 1   MLTADIPPNQTIYIKNLNEKIKKEE---LKRSLYALFSQYGR-----ILDVVALKTPKLR 60

Query: 61  GQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEE 120
           GQAWV F E+T+ASNA RQMQNFPFY+KPMRIQYAKTKSDC+AK DGSFVPREKKKKQEE
Sbjct: 61  GQAWVVFDELTSASNAFRQMQNFPFYDKPMRIQYAKTKSDCIAKNDGSFVPREKKKKQEE 120

Query: 121 KAEKKRRAEEAHQSAMPNGTTAE-NGGSNATFRHANPSAAEATPNNILFIENLPHETSSM 180
           KAE+KRRAEEA QSA PNGT  + NGG  A   H N +A +A PNNILFI+NLPHET+SM
Sbjct: 121 KAERKRRAEEAQQSAKPNGTGFQNNGGPKAPLHHGNLNAEQAAPNNILFIQNLPHETTSM 180

Query: 181 MLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 240
           MLQ+LF+QYPGFREVRM+EAKPGIAFVE+ED+ QSS AMQ LQGFKI PQ+PMAI+FAKK
Sbjct: 181 MLQLLFEQYPGFREVRMVEAKPGIAFVEYEDEEQSSTAMQNLQGFKIAPQYPMAITFAKK 232

[Close]
BLAST of ClCG03G000140 vs. TAIR10
Match: AT1G06960.1 (AT1G06960.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 319.7 bits (818), Expect = 1.5e-87
Identity = 168/240 (70.00%), Postives = 192/240 (80.00%), Query Frame = 1 

Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEGDSFLAFRLTLLYSFRKRLFFCSILDVVALKTPRLR 60
           ML+ DIPPNQ+IYIK++NEK+KKE    L   L  L+S      F  +LDVVALKTP+LR
Sbjct: 1   MLTADIPPNQSIYIKHINEKIKKEE---LKRSLYCLFSQ-----FGRLLDVVALKTPKLR 60

Query: 61  GQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEE 120
           GQAWV F+EVTAASNAVRQMQNFPFY+KPMRIQYAK+KSD V KA+GSFVP+EKK KQEE
Sbjct: 61  GQAWVVFTEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEE 120

Query: 121 KAEKKRRAEEAHQSAMPNGTTAENGGSNATFRHANPSAAEA-TPNNILFIENLPHETSSM 180
           K E+KR AEE  Q +MPNG T +NG     F+   PS  +   PNNILFI NLP ET+SM
Sbjct: 121 KVERKRHAEETQQPSMPNGATTQNGMPVPPFQ---PSGQDTMPPNNILFIHNLPIETNSM 180

Query: 181 MLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 240
           MLQ+LF+QYPGF+E+RMIEAKPGIAFVE+EDDVQSSMAMQALQGFKI PQ+PM +SFAKK
Sbjct: 181 MLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 229

[Close]
BLAST of ClCG03G000140 vs. TAIR10
Match: AT2G30260.1 (AT2G30260.1 U2 small nuclear ribonucleoprotein B)

HSP 1 Score: 303.9 bits (777), Expect = 8.7e-83
Identity = 160/243 (65.84%), Postives = 191/243 (78.60%), Query Frame = 1 

Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEGDSFLAFRLTLLYSFRKRLFFCSILDVVALKTPRLR 60
           ML+ DIPPNQ+IYI+NLNE++KKE    L   L  L+S      F  ILDVVALKTP+LR
Sbjct: 1   MLTADIPPNQSIYIQNLNERIKKEE---LKRSLYCLFSQ-----FGRILDVVALKTPKLR 60

Query: 61  GQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEE 120
           GQAWV FSEVTAA +AVRQMQNFPFY+KPMR+QYAK KSDC+AKA+G+FVP++KK+KQEE
Sbjct: 61  GQAWVTFSEVTAAGHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKQEE 120

Query: 121 KAEKKRRAEEAHQSA---MPNGTTAENGGSNATFRHANPSAAEA-TPNNILFIENLPHET 180
           K E+KR   +   +A     NG +A NG    +F+   PS  E   PNNILFI+NLPHET
Sbjct: 121 KVERKREDSQRPNTANGPSANGPSANNGVPAPSFQ---PSGQETMPPNNILFIQNLPHET 180

Query: 181 SSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISF 240
           +SMMLQ+LF+QYPGF+E+RMI+AKPGIAFVE+EDDVQ+S+AMQ LQGFKI PQ+PM ISF
Sbjct: 181 TSMMLQLLFEQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQGFKITPQNPMVISF 232

[Close]
BLAST of ClCG03G000140 vs. TAIR10
Match: AT2G47580.1 (AT2G47580.1 spliceosomal protein U1A)

HSP 1 Score: 231.5 bits (589), Expect = 5.5e-61
Identity = 131/247 (53.04%), Postives = 164/247 (66.40%), Query Frame = 1 

Query: 5   DIPPNQTIYIKNLNEKVKKEGDSFLAFRLTLLYSFRKRLFFCSILDVVALKTPRLRGQAW 64
           ++ PNQTIYI NLNEKVK +    L   L  ++S      F  IL+++A KT + +GQAW
Sbjct: 13  EVSPNQTIYINNLNEKVKLDE---LKKSLNAVFSQ-----FGKILEILAFKTFKHKGQAW 72

Query: 65  VAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAEK 124
           V F    +AS A+ +M NFPFY+K MRIQYAKTKSD VAKADG+FVPREK+K+ EEK   
Sbjct: 73  VVFDNTESASTAIAKMNNFPFYDKEMRIQYAKTKSDVVAKADGTFVPREKRKRHEEKGGG 132

Query: 125 KRRAEEAH---------QSAMPNGTTAENGGSNATF---RHANPSAAEATPNNILFIENL 184
           K++ ++ H          SA P    A    S   +      N   A A PNNILF++NL
Sbjct: 133 KKKKDQHHDSTQMGMPMNSAYPGVYGAAPPLSQVPYPGGMKPNMPEAPAPPNNILFVQNL 192

Query: 185 PHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPM 240
           PHET+ M+LQ+LF QY GF+EVRMIEAKPGIAFVEF D++QS++AMQ LQGFKI  Q+ M
Sbjct: 193 PHETTPMVLQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAMQGLQGFKIQ-QNQM 250

[Close]
BLAST of ClCG03G000140 vs. NCBI nr
Match: gi|659114937|ref|XP_008457301.1| (PREDICTED: U2 small nuclear ribonucleoprotein B'' 2-like [Cucumis melo])

HSP 1 Score: 417.9 bits (1073), Expect = 1.2e-113
Identity = 218/239 (91.21%), Postives = 220/239 (92.05%), Query Frame = 1 

Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEGDSFLAFRLTLLYSFRKRLFFCSILDVVALKTPRLR 60
           MLSGDIPPNQTIYIKNLNEKVKKE    L   L  L+S   R     ILDVVALKTPRLR
Sbjct: 1   MLSGDIPPNQTIYIKNLNEKVKKEE---LKRSLYALFSQYGR-----ILDVVALKTPRLR 60

Query: 61  GQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEE 120
           GQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADG+FVPREKKKKQEE
Sbjct: 61  GQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGTFVPREKKKKQEE 120

Query: 121 KAEKKRRAEEAHQSAMPNGTTAENGGSNATFRHANPSAAEATPNNILFIENLPHETSSMM 180
           KAEKKRRAEEAHQSAMPNGTT ENGGSNATFRHANPSA EATPNNILFIENLPHETSSMM
Sbjct: 121 KAEKKRRAEEAHQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMM 180

Query: 181 LQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 240
           LQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 LQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]
BLAST of ClCG03G000140 vs. NCBI nr
Match: gi|449439191|ref|XP_004137370.1| (PREDICTED: U2 small nuclear ribonucleoprotein B'' 2-like [Cucumis sativus])

HSP 1 Score: 417.2 bits (1071), Expect = 2.0e-113
Identity = 217/239 (90.79%), Postives = 219/239 (91.63%), Query Frame = 1 

Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEGDSFLAFRLTLLYSFRKRLFFCSILDVVALKTPRLR 60
           MLSGDIPPNQTIYIKNLNEKVKKE    L   L  L+S   R     ILDVVALKTPRLR
Sbjct: 1   MLSGDIPPNQTIYIKNLNEKVKKEE---LKRSLYALFSQYGR-----ILDVVALKTPRLR 60

Query: 61  GQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEE 120
           GQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDC+AKADGSFVPREKKKKQEE
Sbjct: 61  GQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPREKKKKQEE 120

Query: 121 KAEKKRRAEEAHQSAMPNGTTAENGGSNATFRHANPSAAEATPNNILFIENLPHETSSMM 180
           KAEKKRRAEE HQSAMPNGTT ENGGSNATFRHANPSA EATPNNILFIENLPHETSSMM
Sbjct: 121 KAEKKRRAEETHQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMM 180

Query: 181 LQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 240
           LQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 LQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]
BLAST of ClCG03G000140 vs. NCBI nr
Match: gi|1009116350|ref|XP_015874724.1| (PREDICTED: U2 small nuclear ribonucleoprotein B'' 2-like [Ziziphus jujuba])

HSP 1 Score: 362.1 bits (928), Expect = 7.6e-97
Identity = 188/240 (78.33%), Postives = 211/240 (87.92%), Query Frame = 1 

Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEGDSFLAFRLTLLYSFRKRLFFCSILDVVALKTPRLR 60
           ML+GDIPPNQTIYIKNLNEK+KKE    L   L  L+S   R     ILDVVALKTP+LR
Sbjct: 1   MLTGDIPPNQTIYIKNLNEKIKKEE---LKRSLYALFSQYGR-----ILDVVALKTPKLR 60

Query: 61  GQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEE 120
           GQAWVAFSEVTAASNAVRQMQNFPFY+KPMRIQYAKTKSDCVAKA+GS+VPREKKKKQEE
Sbjct: 61  GQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKAEGSYVPREKKKKQEE 120

Query: 121 KAEKKRRAEEAHQSAMPNGTTAENGGSNATFRHANPSAAEAT-PNNILFIENLPHETSSM 180
           KAE+KRR EE  QS +PNGT+A+NG + A+FRH N S+ EA+ PNNILFIENLP ET+SM
Sbjct: 121 KAERKRRTEETQQSTVPNGTSAQNGATAASFRHGNSSSQEASAPNNILFIENLPLETNSM 180

Query: 181 MLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 240
           ML++LF+QYPGF+EVR+IEAKPGIAFVEFEDDVQSSMAMQALQGFKI PQ+PMAI+FAKK
Sbjct: 181 MLELLFRQYPGFKEVRIIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 232

[Close]
BLAST of ClCG03G000140 vs. NCBI nr
Match: gi|225434417|ref|XP_002271864.1| (PREDICTED: U2 small nuclear ribonucleoprotein B'' 2 [Vitis vinifera])

HSP 1 Score: 357.1 bits (915), Expect = 2.4e-95
Identity = 191/242 (78.93%), Postives = 204/242 (84.30%), Query Frame = 1 

Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEGDSFLAFRLTLLYSFRKRLFFCSILDVVALKTPRLR 60
           MLSGDIPPNQ+IYIKNLNEKVKKE    L   L  L+S   R     ILDVVALKTP+LR
Sbjct: 1   MLSGDIPPNQSIYIKNLNEKVKKEE---LKRSLYCLFSQYGR-----ILDVVALKTPKLR 60

Query: 61  GQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEE 120
           GQAWV FSEVTAASNAVRQMQNFPFY+KPMR+QYAKTKSDCVAKADG+FVPREKKKKQEE
Sbjct: 61  GQAWVVFSEVTAASNAVRQMQNFPFYDKPMRVQYAKTKSDCVAKADGTFVPREKKKKQEE 120

Query: 121 KAEKKRRAEEAHQSAMPNGTTAE-NGGSNATFRHANPSA--AEATPNNILFIENLPHETS 180
           KAEKKRRAEEA QS   NG  AE NGG    FR  N  A   EA PNNILFI+NLPH+T+
Sbjct: 121 KAEKKRRAEEAQQSGNANGRNAETNGGPTPPFRQGNQGAREPEAAPNNILFIQNLPHQTT 180

Query: 181 SMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFA 240
           SMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAM+ALQGFKI PQ+PMAI++A
Sbjct: 181 SMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMEALQGFKITPQNPMAIAYA 234

[Close]
BLAST of ClCG03G000140 vs. NCBI nr
Match: gi|568827584|ref|XP_006468132.1| (PREDICTED: U2 small nuclear ribonucleoprotein B'' 2 [Citrus sinensis])

HSP 1 Score: 355.9 bits (912), Expect = 5.5e-95
Identity = 187/240 (77.92%), Postives = 209/240 (87.08%), Query Frame = 1 

Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEGDSFLAFRLTLLYSFRKRLFFCSILDVVALKTPRLR 60
           M++GDIPPNQTIYIKNLNEK+KKE    L   L  L+S   R+F     DVVALKTP+LR
Sbjct: 1   MITGDIPPNQTIYIKNLNEKIKKEE---LKRSLYCLFSQYGRIF-----DVVALKTPKLR 60

Query: 61  GQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEE 120
           GQAWV FSEVTAASNAVRQMQNFPFY+KPMRIQYAK+KSDCVAK DGSFVPREKKKKQEE
Sbjct: 61  GQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEE 120

Query: 121 KAEKKRRAEEAHQSAMPNGTTAE-NGGSNATFRHANPSAAEATPNNILFIENLPHETSSM 180
           KAE+KRRAEEA QS+M NGT A+ NGG+ A+FR+AN +   A PNNILFI+NLPHET+S 
Sbjct: 121 KAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNAN-TQETAAPNNILFIQNLPHETTSS 180

Query: 181 MLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 240
           ML++LFQQYPGF+EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKI PQ+PMAI+FAKK
Sbjct: 181 MLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231

The following BLAST results are available for this feature:
BLAST of ClCG03G000140 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RU2B2_ARATH2.7e-8670.00U2 small nuclear ribonucleoprotein B'' 2 OS=Arabidopsis thaliana GN=At1g06960 PE... [more]
RU2B1_ARATH1.5e-8165.84U2 small nuclear ribonucleoprotein B'' OS=Arabidopsis thaliana GN=U2B'' PE=1 SV=... [more]
RU2B_ORYSI5.0e-8067.22U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. indica GN=OsI_1117... [more]
RU2B_ORYSJ1.1e-7966.80U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. japonica GN=Os03g0... [more]
RU1A_ORYSI6.7e-6153.72U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. indica GN=OsI_18512 ... [more]
BLAST of ClCG03G000140 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LPT7_CUCSA1.4e-11390.79Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025950 PE=4 SV=1[more]
D7SJN7_VITVI1.7e-9578.93Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g07530 PE=4 SV=... [more]
A0A067DUK7_CITSI3.8e-9577.92Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g026902mg PE=4 SV=1[more]
V4T1I4_9ROSI8.5e-9577.50Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002361mg PE=4 SV=1[more]
A0A0D2MP29_GOSRA6.7e-9274.58Uncharacterized protein OS=Gossypium raimondii GN=B456_003G150900 PE=4 SV=1[more]
BLAST of ClCG03G000140 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G06960.11.5e-8770.00 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT2G30260.18.7e-8365.84 U2 small nuclear ribonucleoprotein B[more]
AT2G47580.15.5e-6153.04 spliceosomal protein U1A[more]
BLAST of ClCG03G000140 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659114937|ref|XP_008457301.1|1.2e-11391.21PREDICTED: U2 small nuclear ribonucleoprotein B'' 2-like [Cucumis melo][more]
gi|449439191|ref|XP_004137370.1|2.0e-11390.79PREDICTED: U2 small nuclear ribonucleoprotein B'' 2-like [Cucumis sativus][more]
gi|1009116350|ref|XP_015874724.1|7.6e-9778.33PREDICTED: U2 small nuclear ribonucleoprotein B'' 2-like [Ziziphus jujuba][more]
gi|225434417|ref|XP_002271864.1|2.4e-9578.93PREDICTED: U2 small nuclear ribonucleoprotein B'' 2 [Vitis vinifera][more]
gi|568827584|ref|XP_006468132.1|5.5e-9577.92PREDICTED: U2 small nuclear ribonucleoprotein B'' 2 [Citrus sinensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR024888U1 small nuclear ribonucleoprotein A/U2 small nuclear ribonucleoprotein B''
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
GO:0017069snRNA binding
Vocabulary: Biological Process
TermDefinition
GO:0000398mRNA splicing, via spliceosome
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0008150 biological_process
cellular_component GO:0030529 intracellular ribonucleoprotein complex
cellular_component GO:0019013 viral nucleocapsid
cellular_component GO:0005685 U1 snRNP
cellular_component GO:0005575 cellular_component
cellular_component GO:0005686 U2 snRNP
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0017069 snRNA binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0035614 snRNA stem-loop binding
molecular_function GO:0030619 U1 snRNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG03G000140.1ClCG03G000140.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 167..227
score: 1.8
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 166..235
score: 3.6E-10coord: 11..93
score: 0.
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 10..97
score: 9.797coord: 165..239
score: 13
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 155..239
score: 4.9E-23coord: 7..100
score: 6.3
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 162..227
score: 1.29E-17coord: 8..107
score: 1.29
IPR024888U1 small nuclear ribonucleoprotein A/U2 small nuclear ribonucleoprotein B''PANTHERPTHR10501U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN Bcoord: 1..239
score: 3.6E
NoneNo IPR availableunknownCoilCoilcoord: 112..134
scor

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG03G000140Csa1G025950Cucumber (Chinese Long) v2cuwcgB051
ClCG03G000140MELO3C020490Melon (DHL92) v3.5.1mewcgB149
ClCG03G000140Cla008105Watermelon (97103) v1wcgwmB223
ClCG03G000140Cla97C03G050950Watermelon (97103) v2wcgwmbB186
ClCG03G000140Bhi08G000353Wax gourdwcgwgoB340
ClCG03G000140CSPI01G04730Wild cucumber (PI 183967)cpiwcgB054
ClCG03G000140Cucsa.111900Cucumber (Gy14) v1cgywcgB157
ClCG03G000140CmaCh13G000270Cucurbita maxima (Rimu)cmawcgB194
ClCG03G000140CmaCh01G007120Cucurbita maxima (Rimu)cmawcgB401
ClCG03G000140CmoCh01G007390Cucurbita moschata (Rifu)cmowcgB399
ClCG03G000140CmoCh13G000160Cucurbita moschata (Rifu)cmowcgB190
ClCG03G000140Lsi02G012160Bottle gourd (USVL1VR-Ls)lsiwcgB185
ClCG03G000140Cp4.1LG20g07660Cucurbita pepo (Zucchini)cpewcgB466
ClCG03G000140Cp4.1LG02g11120Cucurbita pepo (Zucchini)cpewcgB504
ClCG03G000140CsGy1G004600Cucumber (Gy14) v2cgybwcgB049
ClCG03G000140MELO3C020490.2Melon (DHL92) v3.6.1medwcgB141
ClCG03G000140Carg07032Silver-seed gourdcarwcgB0506
ClCG03G000140CsaV3_1G004710Cucumber (Chinese Long) v3cucwcgB057
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG03G000140Watermelon (97103) v2wcgwmbB187
ClCG03G000140Wax gourdwcgwgoB337
ClCG03G000140Watermelon (Charleston Gray)wcgwcgB140
ClCG03G000140Cucurbita maxima (Rimu)cmawcgB200
ClCG03G000140Cucurbita maxima (Rimu)cmawcgB404
ClCG03G000140Cucurbita moschata (Rifu)cmowcgB184
ClCG03G000140Cucurbita moschata (Rifu)cmowcgB403
ClCG03G000140Cucurbita pepo (Zucchini)cpewcgB467
ClCG03G000140Cucurbita pepo (Zucchini)cpewcgB502
ClCG03G000140Silver-seed gourdcarwcgB0321
ClCG03G000140Silver-seed gourdcarwcgB0504