Csa1G025950 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G025950
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	U1 small nuclear ribonucleoprotein A; contains IPR012677 (Nucleotide-binding, alpha-beta plait), IPR024888 (U1 small nuclear ribonucleoprotein A/U2 small nuclear ribonucleoprotein B'')
Location	Chr1 : 2962538 .. 2965916 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCGTGGACACCAAAACCTGTGAGTACGATCTTGGTGCTCTGAAGACCTTTGCTGCTAGGGCTCCAAGTCTCCTTCTTTCTTCACTTTCGGAAAACCACATTTCTGTCCATTACTCCGTGATTCTCTATAATCCGAAGGCCCTGAACCCTAACCACCATGTTGTCAGGGGATATACCGCCTAACCAGACCATATACATCAAGAATCTCAACGAGAAGGTCAAGAAAGAAGGTGATTCACTCTTAGCTTTTCACTTAATCTTACTATATTCCTTCCGTAAATGTGTTTTCTTCTGTTCGTTAAGTAGAAACCTTAGTATAATCGAAGTGATCTTCGGCACATTTTATCTTTATCATTTCGCCTTTGGTTTCCCCGGCAAGAGAGGGGGGTTATTTGGCAAAGTTGGATTTGTTTTTATGACAGCATTTAATATTTCTTACGATGCCTACAGTAATGACTCGAGAAGATTAACGATTTCAGTTGAAATTTGAGTTTTAGGGTGATAGAGCTGGTATCTTGAAAGGTTAGTTAGAACTTGGGATTTTGTTTTCTATTTTGGTTTGTTTAGTGCCCGTTTGATAACCATTTGGTTTTTGATTTCTTGTTTTTCAAAATGAAGCTTATAAACACATTGGATTTTTTATTTTATTTTTTAATTTGTAATCTACAATTCACCAATGTTTAGTTTTTAAAAATTGTTTTTGTTTTTGGAATTGGCTAAGAATTCAACTATTGTGCATTTGTATATAAGAAATATGTAAACCGATACGAGAAATTAAGAGAAAAGATTTTTAATTTTCAAAAACCAAAAGCCAAAACAGAATGGTAACCAAACTGACCTTAATGCTCAGTTTTTGACAATATTACATCACATGTGGAGGGGTTGGTTTGAACCCAAGTCCTCATAGTGTTCAGAATTTGATGGTATACTAATTTTCTCCCCCTTGGACAGAATTGAAGAGATCCCTGTATGCTTTGTTTTCTCAATATGGAAGAATCCTTGATGTTGTTGCCTTGAAGACACCGAGGCTTCGAGGGCAAGCATGGGTTGCGTTTAGTGAAGTGACTGCAGCTAGCAATGCTGTGCGTCAGATGCAAAATTTCCCATTCTATGAAAAACCTATGGTTGGTCTTTAGCTGATCACATTTTCGAAATTGCTTTTCATACTTATTTTGTGCCTTTCATCTATGGACTGTTCTAGCGCACTTTCAATATTTCCAAGTAACTGTGGGTAGCTTTCTTTGTAAACGGGATTGGATTCTAACTGTTCAATGAGTCTTATGTTGAGATGGTCAAGAGAAAGTCTATAAACAATCACCCTCAATGTTGTGCCAGTTTAGCTGCTTTGCATGTCTGAAATAACGACCTAATTTTATTGGATATGTGGGTTTTTATATTGGCCATGTGCTGGTTTTAAGCATTTTGAGATCTTTCTTTGCAACCCCTATATATTGAGCATATCTTTTTTCAGTGAATGCCATCGGTCACAAATTACAAGCTTATATGCTGCTTAGAATGTTGTAACTTGGATAGAAGGAGATCATTTCTCCTTGTTCTAATGTGGGTATAATAAAGGGCTTAGTGATAATTATATCATTTCATAGTGGGACACCTATTTGGGATAGTACCCTTCAAGTTTTTTTGGACACCCAAATTTTGTAGGGTCCAATGGGTTATCCTATGAGATTAAGTTGAGATGTATCAATCTGACTTGAAACGCTTATGCCTATAAAATACAGAAGGAAAAAAAAAAAGACTTGGAGACATATCCATGATTGTGTTTGGAAGAAACAAGTATTATTATTTTTTTTGCTCTTCATTTCAGTTATTTTTTTGTTTCATCTCGAAGTTTGTGTACTATATTCAAATATACAGGTTATTCTGATGTTTAACAAGAAGATACTTCTGTTGACCATCTCAAAAATATAAATGACTTTTGTTTCTTTTGCAGCGAATTCAATATGCCAAAACCAAATCAGATTGTATTGCTAAAGCTGATGGAAGCTTTGTGCCAAGGGAGAAGAAAAAGAAGCAAGAGGAAAAAGGTGATTGTAACTGATAGACAATATATTTTCACTATGTTTTTTTGAATTTTTTGACATAACCTCTCATTTTCTTGTTGCATTGCTTTTGAAACATCTCAAGGGTTTTAAACTGGTTTATGCTCCTGACTATCTTTTAATTTGCTTATCCAGCTGAAAAAAAGCGGCGTGCTGAAGAAACACATCAATCTGCGATGCCCAATGGAACAACTACTGAGAATGGAGGTTCAAATGTAAGTTAGTTTTCATTCTTATTTTATTTTATTTTTATAAAAACTTCATTTTTATTTTCCTTCTTCATATGAGCTGTATTGTATTAATTGTTTTCACCAGAAGTGGTCCCAAACATGTATTGTGAGTTTTTTTCGGACAACGTGGTTCTCTGGTTAATTGTATTCTCTTCACATTTGTTAGAAAGTCATTGATGTCCATTCCAATTAGATTTTACCTTAGTGCCCCTGAGATCAGGTAAAGTTAATCAACATGTTTCCAGAACTATTTTTACTAAGAAATCCTCTTTGTTGTGTGTTATTTCTGCAGGCCACATTCCGTCATGCAAATCCGAGTGCTACAGAAGCTACTCCAAACAACATACTATTTATTGAGAATTTGCCCCATGAAACCTCTAGTATGATGTTGCAAGTCCTCTTCCAACAATATCCTGGATTCAGGGAAGTCCGGATGATTGAAGCAAAGCCGGGTATTGCTTTCGTTGAGTTTGAAGATGATGTTCAATCCTCTATGGCTATGCAGGCTCTTCAAGGCTTTAAAATTGACCCCCAACATCCCATGGCTATCTCTTTTGCAAAGAAGTAACTCAACCTTTGTTCTACTGTTACTATTTTGGAATCTGCAGCAGGTTTATGTTAATGTCACCGCACATAAACATGAGTCGTGAGTTTTTATGTAAAGTTCAGATATCCTTCCCCACCTTCAAAGAGAAAGAAAGAAGGAAAACGTTGGGAGGCAGCCCACTGGAAGCCAAGGGACTTGATGAGTTTTGCGGGCTATGCTAATTCCAGTTTCCAGGGGTAGCAAGAAAATAGATTTATGTTAGGTTGTCAAAAAGGAAACAGAGAGAACTAATCAAAGACCTTTTTTTCTTTAAATGTGTTCATGTATTTGTAGTAGTGGAAAACTAGCTTTTGAAAAGGGAACGGGGAGCTGAAATTTAGGGGACAATGTTGATTTGACTTTTGCATGAATATTTCGTGCTCAACAATGAAGTGTTCATTTCTGTCAGTCTCAGGGACAGTGCGTGTGTTTTCTTCCATTGGTCGATTATGAGCAAAAATTTGACCCAAACTTAGTTTCAAAGTTGTGTCATTTACCGGATCA

mRNA sequence

ATGTTGTCAGGGGATATACCGCCTAACCAGACCATATACATCAAGAATCTCAACGAGAAGGTCAAGAAAGAAGAATTGAAGAGATCCCTGTATGCTTTGTTTTCTCAATATGGAAGAATCCTTGATGTTGTTGCCTTGAAGACACCGAGGCTTCGAGGGCAAGCATGGGTTGCGTTTAGTGAAGTGACTGCAGCTAGCAATGCTGTGCGTCAGATGCAAAATTTCCCATTCTATGAAAAACCTATGCGAATTCAATATGCCAAAACCAAATCAGATTGTATTGCTAAAGCTGATGGAAGCTTTGTGCCAAGGGAGAAGAAAAAGAAGCAAGAGGAAAAAGCTGAAAAAAAGCGGCGTGCTGAAGAAACACATCAATCTGCGATGCCCAATGGAACAACTACTGAGAATGGAGGTTCAAATGCCACATTCCGTCATGCAAATCCGAGTGCTACAGAAGCTACTCCAAACAACATACTATTTATTGAGAATTTGCCCCATGAAACCTCTAGTATGATGTTGCAAGTCCTCTTCCAACAATATCCTGGATTCAGGGAAGTCCGGATGATTGAAGCAAAGCCGGGTATTGCTTTCGTTGAGTTTGAAGATGATGTTCAATCCTCTATGGCTATGCAGGCTCTTCAAGGCTTTAAAATTGACCCCCAACATCCCATGGCTATCTCTTTTGCAAAGAAGTAA

Coding sequence (CDS)

ATGTTGTCAGGGGATATACCGCCTAACCAGACCATATACATCAAGAATCTCAACGAGAAGGTCAAGAAAGAAGAATTGAAGAGATCCCTGTATGCTTTGTTTTCTCAATATGGAAGAATCCTTGATGTTGTTGCCTTGAAGACACCGAGGCTTCGAGGGCAAGCATGGGTTGCGTTTAGTGAAGTGACTGCAGCTAGCAATGCTGTGCGTCAGATGCAAAATTTCCCATTCTATGAAAAACCTATGCGAATTCAATATGCCAAAACCAAATCAGATTGTATTGCTAAAGCTGATGGAAGCTTTGTGCCAAGGGAGAAGAAAAAGAAGCAAGAGGAAAAAGCTGAAAAAAAGCGGCGTGCTGAAGAAACACATCAATCTGCGATGCCCAATGGAACAACTACTGAGAATGGAGGTTCAAATGCCACATTCCGTCATGCAAATCCGAGTGCTACAGAAGCTACTCCAAACAACATACTATTTATTGAGAATTTGCCCCATGAAACCTCTAGTATGATGTTGCAAGTCCTCTTCCAACAATATCCTGGATTCAGGGAAGTCCGGATGATTGAAGCAAAGCCGGGTATTGCTTTCGTTGAGTTTGAAGATGATGTTCAATCCTCTATGGCTATGCAGGCTCTTCAAGGCTTTAAAATTGACCCCCAACATCCCATGGCTATCTCTTTTGCAAAGAAGTAA

Protein sequence

MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPREKKKKQEEKAEKKRRAEETHQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK*

Homology

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BLAST of Csa1G025950 vs. Swiss-Prot
Match: RU2B2_ARATH (U2 small nuclear ribonucleoprotein B'' 2 OS=Arabidopsis thaliana GN=At1g06960 PE=1 SV=1)

HSP 1 Score: 357.5 bits (916), Expect = 1.1e-97
Identity = 177/232 (76.29%), Postives = 202/232 (87.07%), Query Frame = 1


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML+ DIPPNQ+IYIK++NEK+KKEELKRSLY LFSQ+GR+LDVVALKTP+LRGQAWV F+
Sbjct: 1   MLTADIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFT 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPREKKKKQEEKAEKKRRA 120
           EVTAASNAVRQMQNFPFY+KPMRIQYAK+KSD + KA+GSFVP+EKK KQEEK E+KR A
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHA 120

Query: 121 EETHQSAMPNGTTTENGGSNATFRHANPSATEA-TPNNILFIENLPHETSSMMLQVLFQQ 180
           EET Q +MPNG TT+NG     F+   PS  +   PNNILFI NLP ET+SMMLQ+LF+Q
Sbjct: 121 EETQQPSMPNGATTQNGMPVPPFQ---PSGQDTMPPNNILFIHNLPIETNSMMLQLLFEQ 180

Query: 181 YPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           YPGF+E+RMIEAKPGIAFVE+EDDVQSSMAMQALQGFKI PQ+PM +SFAKK
Sbjct: 181 YPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 229

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BLAST of Csa1G025950 vs. Swiss-Prot
Match: RU2B1_ARATH (U2 small nuclear ribonucleoprotein B'' OS=Arabidopsis thaliana GN=U2B'' PE=1 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 1.6e-91
Identity = 167/235 (71.06%), Postives = 197/235 (83.83%), Query Frame = 1


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML+ DIPPNQ+IYI+NLNE++KKEELKRSLY LFSQ+GRILDVVALKTP+LRGQAWV FS
Sbjct: 1   MLTADIPPNQSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPREKKKKQEEKAEKKRRA 120
           EVTAA +AVRQMQNFPFY+KPMR+QYAK KSDC+AKA+G+FVP++KK+KQEEK E+KR  
Sbjct: 61  EVTAAGHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKQEEKVERKRED 120

Query: 121 EE---THQSAMPNGTTTENGGSNATFRHANPSATEA-TPNNILFIENLPHETSSMMLQVL 180
            +   T      NG +  NG    +F+   PS  E   PNNILFI+NLPHET+SMMLQ+L
Sbjct: 121 SQRPNTANGPSANGPSANNGVPAPSFQ---PSGQETMPPNNILFIQNLPHETTSMMLQLL 180

Query: 181 FQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           F+QYPGF+E+RMI+AKPGIAFVE+EDDVQ+S+AMQ LQGFKI PQ+PM ISFAKK
Sbjct: 181 FEQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQGFKITPQNPMVISFAKK 232

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BLAST of Csa1G025950 vs. Swiss-Prot
Match: RU2B_ORYSI (U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. indica GN=OsI_11177 PE=3 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 3.0e-90
Identity = 173/233 (74.25%), Postives = 190/233 (81.55%), Query Frame = 1


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLSGDIPPNQT+Y++NLNEKVKKEELKRSLYAL SQYGRILDVVALKTP+LRGQAWV FS
Sbjct: 1   MLSGDIPPNQTVYLRNLNEKVKKEELKRSLYALCSQYGRILDVVALKTPKLRGQAWVVFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPREKKKKQEEK-AEKKRR 120
           E+TAA+NA R +Q F FY K MR+QYAKTKSDC+A  DGS  P+EK+KKQEEK AEKKRR
Sbjct: 61  EITAATNAFRGLQEFDFYGKRMRVQYAKTKSDCLATEDGSTAPKEKRKKQEEKAAEKKRR 120

Query: 121 AEETHQSAMPNGTTTENG-GSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQ 180
           AEE  QS  PN     NG G  A+          A PNNILFI+NLP ET+SMMLQ+LFQ
Sbjct: 121 AEEAQQSG-PNAAAQSNGTGYQASRLGKTSQEPPAPPNNILFIQNLPAETTSMMLQILFQ 180

Query: 181 QYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           QYPGFREVRMIEAKPGIAFVE+EDD QS +AMQALQGFKI P +PMAIS+AKK
Sbjct: 181 QYPGFREVRMIEAKPGIAFVEYEDDSQSMVAMQALQGFKITPYNPMAISYAKK 232

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BLAST of Csa1G025950 vs. Swiss-Prot
Match: RU2B_ORYSJ (U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. japonica GN=Os03g0298800 PE=2 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 6.7e-90
Identity = 172/233 (73.82%), Postives = 190/233 (81.55%), Query Frame = 1


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLSGDIPPNQT+Y++NLNEKVKKEELKRSLYAL SQYGRILDVVALKTP+LRGQAWV FS
Sbjct: 1   MLSGDIPPNQTVYLRNLNEKVKKEELKRSLYALCSQYGRILDVVALKTPKLRGQAWVVFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPREKKKKQEEK-AEKKRR 120
           E+TAA+NA R +Q F FY K MR+QYAKT+SDC+A  DGS  P+EK+KKQEEK AEKKRR
Sbjct: 61  EITAATNAFRGLQEFDFYGKRMRVQYAKTRSDCLATEDGSTAPKEKRKKQEEKAAEKKRR 120

Query: 121 AEETHQSAMPNGTTTENG-GSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQ 180
           AEE  QS  PN     NG G  A+          A PNNILFI+NLP ET+SMMLQ+LFQ
Sbjct: 121 AEEAQQSG-PNAAAQSNGTGYQASRLGKTSQEPPAPPNNILFIQNLPAETTSMMLQILFQ 180

Query: 181 QYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           QYPGFREVRMIEAKPGIAFVE+EDD QS +AMQALQGFKI P +PMAIS+AKK
Sbjct: 181 QYPGFREVRMIEAKPGIAFVEYEDDSQSMVAMQALQGFKITPYNPMAISYAKK 232

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BLAST of Csa1G025950 vs. Swiss-Prot
Match: RU1A_ORYSJ (U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. japonica GN=Os05g0154800 PE=3 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 3.8e-69
Identity = 136/234 (58.12%), Postives = 170/234 (72.65%), Query Frame = 1


Query: 7   PPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAAS 66
           PPN TIYI NLNEK+K EELK+SL A+FSQ+G+ILDV+A KT + +GQAWV F +V +A+
Sbjct: 20  PPNVTIYINNLNEKIKLEELKKSLRAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASAT 79

Query: 67  NAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPREKKKKQEEKAEKKRRAEETHQ- 126
            A++ MQ+FPF+ KPMRIQYAKTKSD IAKADG+FVPRE++K+ +EK EKK++ E+ H  
Sbjct: 80  EALKSMQDFPFHNKPMRIQYAKTKSDIIAKADGTFVPRERRKRNDEKPEKKQKREQHHDV 139

Query: 127 SAMPNGTTTENGGSNATFRHANPSATE--------ATPNNILFIENLPHETSSMMLQVLF 186
           S +  G     G   A      P A            PNNILF++NLPHET+ MMLQ+LF
Sbjct: 140 SQVGLGVNAYPGVYGAPPLSQLPFAGAQKVMMPEIIVPNNILFVQNLPHETTPMMLQMLF 199

Query: 187 QQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
            QYPGF+EVRM+EAKPGIAFVE+ D+ Q++ AM  LQGFKI   + M IS+AKK
Sbjct: 200 CQYPGFKEVRMVEAKPGIAFVEYGDEGQATAAMNHLQGFKITKDNQMLISYAKK 253

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BLAST of Csa1G025950 vs. TrEMBL
Match: A0A0A0LPT7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025950 PE=4 SV=1)

HSP 1 Score: 461.1 bits (1185), Expect = 8.1e-127
Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 1


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPREKKKKQEEKAEKKRRA 120
           EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPREKKKKQEEKAEKKRRA
Sbjct: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPREKKKKQEEKAEKKRRA 120

Query: 121 EETHQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQY 180
           EETHQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 EETHQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

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BLAST of Csa1G025950 vs. TrEMBL
Match: D7SJN7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g07530 PE=4 SV=1)

HSP 1 Score: 389.8 bits (1000), Expect = 2.3e-105
Identity = 197/234 (84.19%), Postives = 210/234 (89.74%), Query Frame = 1


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLSGDIPPNQ+IYIKNLNEKVKKEELKRSLY LFSQYGRILDVVALKTP+LRGQAWV FS
Sbjct: 1   MLSGDIPPNQSIYIKNLNEKVKKEELKRSLYCLFSQYGRILDVVALKTPKLRGQAWVVFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPREKKKKQEEKAEKKRRA 120
           EVTAASNAVRQMQNFPFY+KPMR+QYAKTKSDC+AKADG+FVPREKKKKQEEKAEKKRRA
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRVQYAKTKSDCVAKADGTFVPREKKKKQEEKAEKKRRA 120

Query: 121 EETHQSAMPNGTTTE-NGGSNATFRHANPSA--TEATPNNILFIENLPHETSSMMLQVLF 180
           EE  QS   NG   E NGG    FR  N  A   EA PNNILFI+NLPH+T+SMMLQVLF
Sbjct: 121 EEAQQSGNANGRNAETNGGPTPPFRQGNQGAREPEAAPNNILFIQNLPHQTTSMMLQVLF 180

Query: 181 QQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           QQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAM+ALQGFKI PQ+PMAI++AKK
Sbjct: 181 QQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMEALQGFKITPQNPMAIAYAKK 234

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BLAST of Csa1G025950 vs. TrEMBL
Match: A0A067DUK7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g026902mg PE=4 SV=1)

HSP 1 Score: 389.0 bits (998), Expect = 3.9e-105
Identity = 194/232 (83.62%), Postives = 214/232 (92.24%), Query Frame = 1


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           M++GDIPPNQTIYIKNLNEK+KKEELKRSLY LFSQYGRI DVVALKTP+LRGQAWV FS
Sbjct: 1   MITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPREKKKKQEEKAEKKRRA 120
           EVTAASNAVRQMQNFPFY+KPMRIQYAK+KSDC+AK DGSFVPREKKKKQEEKAE+KRRA
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRA 120

Query: 121 EETHQSAMPNGTTTE-NGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQ 180
           EE  QS+M NGT  + NGG+ A+FR+AN   T A PNNILFI+NLPHET+S ML++LFQQ
Sbjct: 121 EEAQQSSMANGTGAQSNGGTAASFRNANTQET-AAPNNILFIQNLPHETTSSMLEMLFQQ 180

Query: 181 YPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           YPGF+EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKI PQ+PMAI+FAKK
Sbjct: 181 YPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231

[Close]

BLAST of Csa1G025950 vs. TrEMBL
Match: V4T1I4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002361mg PE=4 SV=1)

HSP 1 Score: 385.2 bits (988), Expect = 5.7e-104
Identity = 193/232 (83.19%), Postives = 213/232 (91.81%), Query Frame = 1


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           M++GDIPPNQTIYIKNLNEK+KKEELKRSLY LFSQYGRI DVVALKTP+LRGQAWV FS
Sbjct: 1   MITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPREKKKKQEEKAEKKRRA 120
           EVTAASNAVRQMQNFPFY+KPMRIQYAK+KSDCIAK DGSFVPREKKKKQEEKAE+KRRA
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCIAKEDGSFVPREKKKKQEEKAERKRRA 120

Query: 121 EETHQSAMPNGTTTE-NGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQ 180
           EE  QS+M NGT  + N G+ A+FR+AN +   A PNNILFI+NLPHET+S ML++LFQQ
Sbjct: 121 EEAQQSSMANGTGAQSNSGTAASFRNAN-TQEAAAPNNILFIQNLPHETTSSMLEMLFQQ 180

Query: 181 YPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           YPGF+EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKI PQ+PMAI+FAKK
Sbjct: 181 YPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231

[Close]

BLAST of Csa1G025950 vs. TrEMBL
Match: A0A0D2MP29_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G150900 PE=4 SV=1)

HSP 1 Score: 381.7 bits (979), Expect = 6.3e-103
Identity = 189/232 (81.47%), Postives = 208/232 (89.66%), Query Frame = 1


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML+ DIPPNQTIYIKNLNEK+KKEELKRSLYALFSQYGRILDVVALKTP+LRGQAWV F 
Sbjct: 1   MLTADIPPNQTIYIKNLNEKIKKEELKRSLYALFSQYGRILDVVALKTPKLRGQAWVVFD 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPREKKKKQEEKAEKKRRA 120
           E+T+ASNA RQMQNFPFY+KPMRIQYAKTKSDCIAK DGSFVPREKKKKQEEKAE+KRRA
Sbjct: 61  ELTSASNAFRQMQNFPFYDKPMRIQYAKTKSDCIAKNDGSFVPREKKKKQEEKAERKRRA 120

Query: 121 EETHQSAMPNGTTTE-NGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQ 180
           EE  QSA PNGT  + NGG  A   H N +A +A PNNILFI+NLPHET+SMMLQ+LF+Q
Sbjct: 121 EEAQQSAKPNGTGFQNNGGPKAPLHHGNLNAEQAAPNNILFIQNLPHETTSMMLQLLFEQ 180

Query: 181 YPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           YPGFREVRM+EAKPGIAFVE+ED+ QSS AMQ LQGFKI PQ+PMAI+FAKK
Sbjct: 181 YPGFREVRMVEAKPGIAFVEYEDEEQSSTAMQNLQGFKIAPQYPMAITFAKK 232

[Close]

BLAST of Csa1G025950 vs. TAIR10
Match: AT1G06960.1 (AT1G06960.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 357.5 bits (916), Expect = 6.4e-99
Identity = 177/232 (76.29%), Postives = 202/232 (87.07%), Query Frame = 1


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML+ DIPPNQ+IYIK++NEK+KKEELKRSLY LFSQ+GR+LDVVALKTP+LRGQAWV F+
Sbjct: 1   MLTADIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFT 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPREKKKKQEEKAEKKRRA 120
           EVTAASNAVRQMQNFPFY+KPMRIQYAK+KSD + KA+GSFVP+EKK KQEEK E+KR A
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHA 120

Query: 121 EETHQSAMPNGTTTENGGSNATFRHANPSATEA-TPNNILFIENLPHETSSMMLQVLFQQ 180
           EET Q +MPNG TT+NG     F+   PS  +   PNNILFI NLP ET+SMMLQ+LF+Q
Sbjct: 121 EETQQPSMPNGATTQNGMPVPPFQ---PSGQDTMPPNNILFIHNLPIETNSMMLQLLFEQ 180

Query: 181 YPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           YPGF+E+RMIEAKPGIAFVE+EDDVQSSMAMQALQGFKI PQ+PM +SFAKK
Sbjct: 181 YPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 229

[Close]

BLAST of Csa1G025950 vs. TAIR10
Match: AT2G30260.1 (AT2G30260.1 U2 small nuclear ribonucleoprotein B)

HSP 1 Score: 337.0 bits (863), Expect = 9.0e-93
Identity = 167/235 (71.06%), Postives = 197/235 (83.83%), Query Frame = 1


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML+ DIPPNQ+IYI+NLNE++KKEELKRSLY LFSQ+GRILDVVALKTP+LRGQAWV FS
Sbjct: 1   MLTADIPPNQSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPREKKKKQEEKAEKKRRA 120
           EVTAA +AVRQMQNFPFY+KPMR+QYAK KSDC+AKA+G+FVP++KK+KQEEK E+KR  
Sbjct: 61  EVTAAGHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKQEEKVERKRED 120

Query: 121 EE---THQSAMPNGTTTENGGSNATFRHANPSATEA-TPNNILFIENLPHETSSMMLQVL 180
            +   T      NG +  NG    +F+   PS  E   PNNILFI+NLPHET+SMMLQ+L
Sbjct: 121 SQRPNTANGPSANGPSANNGVPAPSFQ---PSGQETMPPNNILFIQNLPHETTSMMLQLL 180

Query: 181 FQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           F+QYPGF+E+RMI+AKPGIAFVE+EDDVQ+S+AMQ LQGFKI PQ+PM ISFAKK
Sbjct: 181 FEQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQGFKITPQNPMVISFAKK 232

[Close]

BLAST of Csa1G025950 vs. TAIR10
Match: AT2G47580.1 (AT2G47580.1 spliceosomal protein U1A)

HSP 1 Score: 258.1 bits (658), Expect = 5.3e-69
Identity = 135/244 (55.33%), Postives = 170/244 (69.67%), Query Frame = 1


Query: 5   DIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTA 64
           ++ PNQTIYI NLNEKVK +ELK+SL A+FSQ+G+IL+++A KT + +GQAWV F    +
Sbjct: 13  EVSPNQTIYINNLNEKVKLDELKKSLNAVFSQFGKILEILAFKTFKHKGQAWVVFDNTES 72

Query: 65  ASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPREKKKKQEEKAEKKRRAEETH 124
           AS A+ +M NFPFY+K MRIQYAKTKSD +AKADG+FVPREK+K+ EEK   K++ ++ H
Sbjct: 73  ASTAIAKMNNFPFYDKEMRIQYAKTKSDVVAKADGTFVPREKRKRHEEKGGGKKKKDQHH 132

Query: 125 QS-----------------AMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHE 184
            S                 A P       GG        N     A PNNILF++NLPHE
Sbjct: 133 DSTQMGMPMNSAYPGVYGAAPPLSQVPYPGGMK-----PNMPEAPAPPNNILFVQNLPHE 192

Query: 185 TSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAIS 232
           T+ M+LQ+LF QY GF+EVRMIEAKPGIAFVEF D++QS++AMQ LQGFKI  Q+ M I+
Sbjct: 193 TTPMVLQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAMQGLQGFKIQ-QNQMLIT 250

[Close]

BLAST of Csa1G025950 vs. NCBI nr
Match: gi|449439191|ref|XP_004137370.1| (PREDICTED: U2 small nuclear ribonucleoprotein B'' 2-like [Cucumis sativus])

HSP 1 Score: 461.1 bits (1185), Expect = 1.2e-126
Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 1


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPREKKKKQEEKAEKKRRA 120
           EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPREKKKKQEEKAEKKRRA
Sbjct: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPREKKKKQEEKAEKKRRA 120

Query: 121 EETHQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQY 180
           EETHQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 EETHQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]

BLAST of Csa1G025950 vs. NCBI nr
Match: gi|659114937|ref|XP_008457301.1| (PREDICTED: U2 small nuclear ribonucleoprotein B'' 2-like [Cucumis melo])

HSP 1 Score: 457.6 bits (1176), Expect = 1.3e-125
Identity = 228/231 (98.70%), Postives = 230/231 (99.57%), Query Frame = 1


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPREKKKKQEEKAEKKRRA 120
           EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDC+AKADG+FVPREKKKKQEEKAEKKRRA
Sbjct: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGTFVPREKKKKQEEKAEKKRRA 120

Query: 121 EETHQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQY 180
           EE HQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 EEAHQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]

BLAST of Csa1G025950 vs. NCBI nr
Match: gi|1009116350|ref|XP_015874724.1| (PREDICTED: U2 small nuclear ribonucleoprotein B'' 2-like [Ziziphus jujuba])

HSP 1 Score: 399.8 bits (1026), Expect = 3.2e-108
Identity = 197/232 (84.91%), Postives = 220/232 (94.83%), Query Frame = 1


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML+GDIPPNQTIYIKNLNEK+KKEELKRSLYALFSQYGRILDVVALKTP+LRGQAWVAFS
Sbjct: 1   MLTGDIPPNQTIYIKNLNEKIKKEELKRSLYALFSQYGRILDVVALKTPKLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPREKKKKQEEKAEKKRRA 120
           EVTAASNAVRQMQNFPFY+KPMRIQYAKTKSDC+AKA+GS+VPREKKKKQEEKAE+KRR 
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKAEGSYVPREKKKKQEEKAERKRRT 120

Query: 121 EETHQSAMPNGTTTENGGSNATFRHANPSATEAT-PNNILFIENLPHETSSMMLQVLFQQ 180
           EET QS +PNGT+ +NG + A+FRH N S+ EA+ PNNILFIENLP ET+SMML++LF+Q
Sbjct: 121 EETQQSTVPNGTSAQNGATAASFRHGNSSSQEASAPNNILFIENLPLETNSMMLELLFRQ 180

Query: 181 YPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           YPGF+EVR+IEAKPGIAFVEFEDDVQSSMAMQALQGFKI PQ+PMAI+FAKK
Sbjct: 181 YPGFKEVRIIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 232

[Close]

BLAST of Csa1G025950 vs. NCBI nr
Match: gi|225434417|ref|XP_002271864.1| (PREDICTED: U2 small nuclear ribonucleoprotein B'' 2 [Vitis vinifera])

HSP 1 Score: 389.8 bits (1000), Expect = 3.3e-105
Identity = 197/234 (84.19%), Postives = 210/234 (89.74%), Query Frame = 1


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLSGDIPPNQ+IYIKNLNEKVKKEELKRSLY LFSQYGRILDVVALKTP+LRGQAWV FS
Sbjct: 1   MLSGDIPPNQSIYIKNLNEKVKKEELKRSLYCLFSQYGRILDVVALKTPKLRGQAWVVFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPREKKKKQEEKAEKKRRA 120
           EVTAASNAVRQMQNFPFY+KPMR+QYAKTKSDC+AKADG+FVPREKKKKQEEKAEKKRRA
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRVQYAKTKSDCVAKADGTFVPREKKKKQEEKAEKKRRA 120

Query: 121 EETHQSAMPNGTTTE-NGGSNATFRHANPSA--TEATPNNILFIENLPHETSSMMLQVLF 180
           EE  QS   NG   E NGG    FR  N  A   EA PNNILFI+NLPH+T+SMMLQVLF
Sbjct: 121 EEAQQSGNANGRNAETNGGPTPPFRQGNQGAREPEAAPNNILFIQNLPHQTTSMMLQVLF 180

Query: 181 QQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           QQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAM+ALQGFKI PQ+PMAI++AKK
Sbjct: 181 QQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMEALQGFKITPQNPMAIAYAKK 234

[Close]

BLAST of Csa1G025950 vs. NCBI nr
Match: gi|568827584|ref|XP_006468132.1| (PREDICTED: U2 small nuclear ribonucleoprotein B'' 2 [Citrus sinensis])

HSP 1 Score: 389.0 bits (998), Expect = 5.6e-105
Identity = 194/232 (83.62%), Postives = 214/232 (92.24%), Query Frame = 1


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           M++GDIPPNQTIYIKNLNEK+KKEELKRSLY LFSQYGRI DVVALKTP+LRGQAWV FS
Sbjct: 1   MITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPREKKKKQEEKAEKKRRA 120
           EVTAASNAVRQMQNFPFY+KPMRIQYAK+KSDC+AK DGSFVPREKKKKQEEKAE+KRRA
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRA 120

Query: 121 EETHQSAMPNGTTTE-NGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQ 180
           EE  QS+M NGT  + NGG+ A+FR+AN   T A PNNILFI+NLPHET+S ML++LFQQ
Sbjct: 121 EEAQQSSMANGTGAQSNGGTAASFRNANTQET-AAPNNILFIQNLPHETTSSMLEMLFQQ 180

Query: 181 YPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           YPGF+EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKI PQ+PMAI+FAKK
Sbjct: 181 YPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231

The following BLAST results are available for this feature:

BLAST of Csa1G025950 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RU2B2_ARATH	1.1e-97	76.29	U2 small nuclear ribonucleoprotein B'' 2 OS=Arabidopsis thaliana GN=At1g06960 PE...	[more]
RU2B1_ARATH	1.6e-91	71.06	U2 small nuclear ribonucleoprotein B'' OS=Arabidopsis thaliana GN=U2B'' PE=1 SV=...	[more]
RU2B_ORYSI	3.0e-90	74.25	U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. indica GN=OsI_1117...	[more]
RU2B_ORYSJ	6.7e-90	73.82	U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. japonica GN=Os03g0...	[more]
RU1A_ORYSJ	3.8e-69	58.12	U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. japonica GN=Os05g015...	[more]

BLAST of Csa1G025950 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPT7_CUCSA	8.1e-127	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025950 PE=4 SV=1	[more]
D7SJN7_VITVI	2.3e-105	84.19	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g07530 PE=4 SV=...	[more]
A0A067DUK7_CITSI	3.9e-105	83.62	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g026902mg PE=4 SV=1	[more]
V4T1I4_9ROSI	5.7e-104	83.19	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002361mg PE=4 SV=1	[more]
A0A0D2MP29_GOSRA	6.3e-103	81.47	Uncharacterized protein OS=Gossypium raimondii GN=B456_003G150900 PE=4 SV=1	[more]

BLAST of Csa1G025950 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G06960.1	6.4e-99	76.29	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G30260.1	9.0e-93	71.06	U2 small nuclear ribonucleoprotein B	[more]
AT2G47580.1	5.3e-69	55.33	spliceosomal protein U1A	[more]

BLAST of Csa1G025950 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449439191\|ref\|XP_004137370.1\|	1.2e-126	100.00	PREDICTED: U2 small nuclear ribonucleoprotein B'' 2-like [Cucumis sativus]	[more]
gi\|659114937\|ref\|XP_008457301.1\|	1.3e-125	98.70	PREDICTED: U2 small nuclear ribonucleoprotein B'' 2-like [Cucumis melo]	[more]
gi\|1009116350\|ref\|XP_015874724.1\|	3.2e-108	84.91	PREDICTED: U2 small nuclear ribonucleoprotein B'' 2-like [Ziziphus jujuba]	[more]
gi\|225434417\|ref\|XP_002271864.1\|	3.3e-105	84.19	PREDICTED: U2 small nuclear ribonucleoprotein B'' 2 [Vitis vinifera]	[more]
gi\|568827584\|ref\|XP_006468132.1\|	5.6e-105	83.62	PREDICTED: U2 small nuclear ribonucleoprotein B'' 2 [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR024888	U1 small nuclear ribonucleoprotein A/U2 small nuclear ribonucleoprotein B''

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding
GO:0017069	snRNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0000398	mRNA splicing, via spliceosome

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0030529	intracellular ribonucleoprotein complex
cellular_component	GO:0019013	viral nucleocapsid
cellular_component	GO:0005685	U1 snRNP
cellular_component	GO:0005686	U2 snRNP
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0017069	snRNA binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0035614	snRNA stem-loop binding
molecular_function	GO:0030619	U1 snRNA binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU090401	cucumber EST collection version 3.0	transcribed_cluster
CU093546	cucumber EST collection version 3.0	transcribed_cluster
CU109883	cucumber EST collection version 3.0	transcribed_cluster
CU110810	cucumber EST collection version 3.0	transcribed_cluster
CU155143	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G025950.1	Csa1G025950.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU090401	CU090401	transcribed_cluster
CU110810	CU110810	transcribed_cluster
CU093546	CU093546	transcribed_cluster
CU109883	CU109883	transcribed_cluster
CU155143	CU155143	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 159..219 score: 1.7E-12coord: 12..82 score: 3.
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 11..85 score: 2.5E-12coord: 158..227 score: 3.6
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 157..231 score: 13.294coord: 10..89 score: 14
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 147..231 score: 3.6E-23coord: 7..92 score: 1.7
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 154..221 score: 8.15E-26coord: 8..99 score: 8.15
IPR024888	U1 small nuclear ribonucleoprotein A/U2 small nuclear ribonucleoprotein B''	PANTHER	PTHR10501	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B	coord: 1..231 score: 8.0E
None	No IPR available	unknown	Coil	Coil	coord: 104..126 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G025950	Cla008105	Watermelon (97103) v1	cuwmB026
Csa1G025950	MELO3C020490	Melon (DHL92) v3.5.1	cumeB035
Csa1G025950	ClCG03G000140	Watermelon (Charleston Gray)	cuwcgB051
Csa1G025950	Lsi02G012160	Bottle gourd (USVL1VR-Ls)	culsiB039
Csa1G025950	MELO3C020490.2	Melon (DHL92) v3.6.1	cumedB030
Csa1G025950	Cla97C03G050950	Watermelon (97103) v2	cuwmbB049
Csa1G025950	Bhi08G000353	Wax gourd	cuwgoB063
Csa1G025950	CSPI01G04730	Wild cucumber (PI 183967)	cpicuB000
Csa1G025950	Cucsa.111900	Cucumber (Gy14) v1	cgycuB137
Csa1G025950	CmaCh01G007120	Cucurbita maxima (Rimu)	cmacuB428
Csa1G025950	CmoCh01G007390	Cucurbita moschata (Rifu)	cmocuB417
Csa1G025950	Cp4.1LG02g11120	Cucurbita pepo (Zucchini)	cpecuB533
Csa1G025950	CsGy1G004600	Cucumber (Gy14) v2	cgybcuB001
Csa1G025950	Carg07032	Silver-seed gourd	carcuB0549

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None