Cp4.1LG02g11120 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG02g11120
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionU2 small nuclear ribonucleoprotein B
LocationCp4.1LG02 : 10369270 .. 10372757 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTGGGCCTGGGTTGAATATTGGAGGCCCATTAGCAATTTTGCTATTCTAGGGCTCTATCCTGCTTCCGCCGAGTCTCCTTCGTCCTGCTACATTCGAAGAACCAGATTTGTGTTCGGTGCTCCGTGATTCTCTGTAAGCCGAAGGCGCTAAACGTGAACGCGAACCACCATGTTATTGGGGGATATACCACNGGGTTGAATATTGGAGGCCCATTAGCAATTTTGCTATTCTAGGGCTCTATCCTGCTTCCGCCGAGTCTCCTTCGTCCTGCTACATTCGAAGAACCAGATTTGTGTTGGGTGCTCCGTGATTCTCTGTAAGCCGAAGGCGCTGAACGTGAACGCGAACCACCATGTTATTGGGGGATATACCACCTAACCAGACCATATACATTAAGAATCTCAATGAGAAGGTCAAGAAAGAAGGTAATTCTGTTCGCTTTTTGCTTATCCCTTGTGTAAATGATTTTTTCTCCTGTTCAATGAGTAGATAGCTTAGTGAGTTGAACTGATCTGCGTGACATTTTATTATTTTCATTTCGCTTTCAGCTCAAAATTCAGCTACTGTCTTGCCTGTTTTTGGGCGAAGTTTTGCTTGTTTTTGTTACCGTTTTAAATATTTCTGATTGCCACACAGTGATTACTCGAGAATGTAGATATTACAGTTGGAATTTGGTTTTTAGGGTGAGGGACCTGATGGCTTGAAATTTTAGTTTGGATAATGCGACGGCTGCTTGGTTTACCATTTACCATGGCATTTTGAATTTTGTTTACTGTCTTGGTTGATTAGCCCTCTTTATATATATATATATATATATATATATATAATAATTTGGGCTTTAGTTTTTGGGTTTTGAAAATTAAGCTGGTGAACACTACTTCCATATTGTTTTCTTTGTTTTTCGAAGTTCAAGCTAAAATTTGGAAACCAAGGAAAGGTTATTTTTAGAAACGTGTTTTTGATCTTGGAATTTGGCATGTATATTTGGAAATATGAAAGCCATTATAAGGAAATGATGAGAAAACAGGCTCAATTTTCAAAAATAAAAAACTAAAAACCAAATGGTTAATTATACATGGCCTTAGTGTTCAGTTTTTGACAATGTTGCATCACATGTGAAGCGTGGCTTTCAATCCTATGGCTTCTTAATGTTTGGATTTGATGGTAGACTGAATTTCTCCTGTTTGACAGAATTGAAGAGATCCCTCTATGCTTTGTTTTCTCAATATGGAAGGATCCTTGACGTTGTTGCCTTGAAGACCCCGAGGCTTCGAGGGCAAGCATGGGTTGCATTTAGTGAAGTGACTGCAGCTAGCAATGCTGTGCGGCAGATGCAAAACTTCCCATTCTATGATAAGCCTATGGTTCGTTTCTAGCTGATCACATTTTTTGAACTTGCTTTTCATAGTCTTTTTGTGGACTTTCATCTATGGTCTGTTCCAGTACGCTTTGAAGTTCTTTGGATAACTGTGGATAGTTTGCTGGTCAGGGAATTGAAGTGATCCTGAGTGTTATGTGTGAAGAGCGTCATGTGAATATCTATACCCAACAACACTTAACATTATGACAGTTTAGCTGCTTTGCATATCCAAAATTATGTCTTTTATCTTTTTGAATATGTAGGCTTATTATATTGGCTATATGCCTTCTTTGATCATTTTGAGATCTTCATTTGCAACTCCTGTCTATTGACATTTCTTCTGTCAATGTATGCCATCATACTTATGTAGTGCTTAAAATGTTGTTGACACACTAAATCTTGATATTGATTGTAAACTATGCGAAGTGATTTTTTTTCTCGTTTTTCTAACATAACCACAGACGTATCCATAATTCTATTTGGTACAAACAAGTATTGTTACTATCTTTTCTTCTAAAAAAATCAGTTAGTTTTTGTTTCATCTTGAAAATTTGTGTATTGTCTTGTTGCCCATTCATACAATTTTCCGATATTGGATATGTAGATGACTTTCTGTTGCCTATCCCAAAAGTTTGAAATGACTATTTTTCTTTTGTGCAGCGAATTCAATATGCCAAAACCAAATCAGATTGTGTTGCTAAAGCTGATGGAAGCTTTGTGCCAAGGGAGAAGAAGAAGAAGCAAGAGGAAAAAGGTGATTGTAACACCAACTACTCTTTCTAAATTTCTTTTGAACTTCGTTGGTGGACATAATCTTGAAGTTGGTGGGGGGACAGTTATAATTAAACTATGAAACATTGTTTCAGGGAACTGGTTGGAAATAACCTCTCATTTTCCAATTGCATTGCTTTTAAGAAGTTGCAAGGTTTCTAAACTGTGTTCCTTATTATCTTTTAATTTGCACATGCAGCTGAGAGAAAGCGACGTACTGACGAAACACACCAGTCTGCGATGCCCAATGGAGCAACCGCTGAGAATGGAGGTTCAAATGTAAGTTTCTTCACTCTTCTTCTTTTTTTCTTTTTTTCTTTTTTGCTTTCGTTTTTGTGATGTCAAATGGATATTTTTCTTCTTCATATGAGCTGTATTGTATTAATTGCTACTCTATAAGTGGTCCTGAGCATTAATTGTATGAGTCTTTTTGGATGGCGTGGTTCTCTGGTTAGTTGTTTTTTCTTCTCATCAGTTTTTAAAGACATTGGTGTCTATTTCAATTAGATTTCATGTTAGTGCCCCTTAGATCAGGCAATGTTATTCAACTTTTTTTCACAATTACTTATGCTAAGAACGCGTCTTCATTGTGTGCAGGCCACATTCCGTCATGCAAATCCAAGCGCTCCAGAAGCTACTCCAAACAACATACTATTTATTGAGAATTTGCCTCATGAAACTTCGAGTATGATGTTGCAAGTCCTCTTCCAACAATATCCTGGATTCAGGGAAGTCCGAATGATTGAAGCAAAGCCGGGTATTGCTTTTGTTGAGTTTGAAGATGATGTTCAATCCTCTATGGCGATGCAGGCTCTTCAGGGCTTTAAAATTGATCCCCAACATCCCATGGCCATCTCTTTTGCAAAGAAGTAACTCAGCCTTTGTTCTACTCTTAGTTTTAGTAACGTGCAGCGGGACTATGTTAATGTCGGAGCATATTAGTATGAGTCAGAAGTTTTTATGTAAAGTTCAGATATCCTTCCCCTCCTTTCAACGATAAAAGAGAACGAACGAACGAAAACATTGGGATAGGCAGGCCACTGATTCCAAAAGATGAGGATATCAAACCAAGGGACTCAATGAGTTTGCCGGCTGTGTTCATTTCAGTTTCCAGCGGTAGCAAGAAAATAGTTTTATGTTAGGTTGTCAAAATGGAAACAGAAAGAACCAATCAAAGACTTATTTCTAAATGTGTTCATGTACTACAGGGAGATGAAATTCAGGAAAACAATGTTCGATTACATTTTTGCATGAATATTTCGTTCTTGACAATGAAGTGTTGATAAACATTTCTGTCAAAGTCTCAGGGACAGAGCTGCTTGGTGCGTGCATTATCTTCCACTGGTCGATTGTG

mRNA sequence

TTTTGGGCCTGGGTTGAATATTGGAGGCCCATTAGCAATTTTGCTATTCTAGGGCTCTATCCTGCTTCCGCCGAGTCTCCTTCGTCCTGCTACATTCGAAGAACCAGATTTGTGTTGGGTGCTCCGTGATTCTCTGTAAGCCGAAGGCGCTGAACGTGAACGCGAACCACCATGTTATTGGGGGATATACCACCTAACCAGACCATATACATTAAGAATCTCAATGAGAAGGTCAAGAAAGAAGAATTGAAGAGATCCCTCTATGCTTTGTTTTCTCAATATGGAAGGATCCTTGACGTTGTTGCCTTGAAGACCCCGAGGCTTCGAGGGCAAGCATGGGTTGCATTTAGTGAAGTGACTGCAGCTAGCAATGCTGTGCGGCAGATGCAAAACTTCCCATTCTATGATAAGCCTATGCGAATTCAATATGCCAAAACCAAATCAGATTGTGTTGCTAAAGCTGATGGAAGCTTTGTGCCAAGGGAGAAGAAGAAGAAGCAAGAGGAAAAAGCTGAGAGAAAGCGACGTACTGACGAAACACACCAGTCTGCGATGCCCAATGGAGCAACCGCTGAGAATGGAGGTTCAAATGCCACATTCCGTCATGCAAATCCAAGCGCTCCAGAAGCTACTCCAAACAACATACTATTTATTGAGAATTTGCCTCATGAAACTTCGAGTATGATGTTGCAAGTCCTCTTCCAACAATATCCTGGATTCAGGGAAGTCCGAATGATTGAAGCAAAGCCGGGTATTGCTTTTGTTGAGTTTGAAGATGATGTTCAATCCTCTATGGCGATGCAGGCTCTTCAGGGCTTTAAAATTGATCCCCAACATCCCATGGCCATCTCTTTTGCAAAGAAGTAACTCAGCCTTTGTTCTACTCTTAGTTTTAGTAACGTGCAGCGGGACTATGTTAATGTCGGAGCATATTAGTATGAGTCAGAAGTTTTTATGTAAAGTTCAGATATCCTTCCCCTCCTTTCAACGATAAAAGAGAACGAACGAACGAAAACATTGGGATAGGCAGGCCACTGATTCCAAAAGATGAGGATATCAAACCAAGGGACTCAATGAGTTTGCCGGCTGTGTTCATTTCAGTTTCCAGCGGTAGCAAGAAAATAGTTTTATGTTAGGTTGTCAAAATGGAAACAGAAAGAACCAATCAAAGACTTATTTCTAAATGTGTTCATGTACTACAGGGAGATGAAATTCAGGAAAACAATGTTCGATTACATTTTTGCATGAATATTTCGTTCTTGACAATGAAGTGTTGATAAACATTTCTGTCAAAGTCTCAGGGACAGAGCTGCTTGGTGCGTGCATTATCTTCCACTGGTCGATTGTG

Coding sequence (CDS)

ATGTTATTGGGGGATATACCACCTAACCAGACCATATACATTAAGAATCTCAATGAGAAGGTCAAGAAAGAAGAATTGAAGAGATCCCTCTATGCTTTGTTTTCTCAATATGGAAGGATCCTTGACGTTGTTGCCTTGAAGACCCCGAGGCTTCGAGGGCAAGCATGGGTTGCATTTAGTGAAGTGACTGCAGCTAGCAATGCTGTGCGGCAGATGCAAAACTTCCCATTCTATGATAAGCCTATGCGAATTCAATATGCCAAAACCAAATCAGATTGTGTTGCTAAAGCTGATGGAAGCTTTGTGCCAAGGGAGAAGAAGAAGAAGCAAGAGGAAAAAGCTGAGAGAAAGCGACGTACTGACGAAACACACCAGTCTGCGATGCCCAATGGAGCAACCGCTGAGAATGGAGGTTCAAATGCCACATTCCGTCATGCAAATCCAAGCGCTCCAGAAGCTACTCCAAACAACATACTATTTATTGAGAATTTGCCTCATGAAACTTCGAGTATGATGTTGCAAGTCCTCTTCCAACAATATCCTGGATTCAGGGAAGTCCGAATGATTGAAGCAAAGCCGGGTATTGCTTTTGTTGAGTTTGAAGATGATGTTCAATCCTCTATGGCGATGCAGGCTCTTCAGGGCTTTAAAATTGATCCCCAACATCCCATGGCCATCTCTTTTGCAAAGAAGTAA

Protein sequence

MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRTDETHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Homology
[Close]
BLAST of Cp4.1LG02g11120 vs. Swiss-Prot
Match: RU2B2_ARATH (U2 small nuclear ribonucleoprotein B'' 2 OS=Arabidopsis thaliana GN=At1g06960 PE=1 SV=1)

HSP 1 Score: 345.5 bits (885), Expect = 4.5e-94
Identity = 178/232 (76.72%), Postives = 202/232 (87.07%), Query Frame = 1 

Query: 1   MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML  DIPPNQ+IYIK++NEK+KKEELKRSLY LFSQ+GR+LDVVALKTP+LRGQAWV F+
Sbjct: 1   MLTADIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFT 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRT 120
           EVTAASNAVRQMQNFPFYDKPMRIQYAK+KSD V KA+GSFVP+EKK KQEEK ERKR  
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHA 120

Query: 121 DETHQSAMPNGATAENGGSNATFRHANPSAPEA-TPNNILFIENLPHETSSMMLQVLFQQ 180
           +ET Q +MPNGAT +NG     F+   PS  +   PNNILFI NLP ET+SMMLQ+LF+Q
Sbjct: 121 EETQQPSMPNGATTQNGMPVPPFQ---PSGQDTMPPNNILFIHNLPIETNSMMLQLLFEQ 180

Query: 181 YPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           YPGF+E+RMIEAKPGIAFVE+EDDVQSSMAMQALQGFKI PQ+PM +SFAKK
Sbjct: 181 YPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 229

[Close]
BLAST of Cp4.1LG02g11120 vs. Swiss-Prot
Match: RU2B1_ARATH (U2 small nuclear ribonucleoprotein B'' OS=Arabidopsis thaliana GN=U2B'' PE=1 SV=1)

HSP 1 Score: 329.3 bits (843), Expect = 3.3e-89
Identity = 170/235 (72.34%), Postives = 199/235 (84.68%), Query Frame = 1 

Query: 1   MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML  DIPPNQ+IYI+NLNE++KKEELKRSLY LFSQ+GRILDVVALKTP+LRGQAWV FS
Sbjct: 1   MLTADIPPNQSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRT 120
           EVTAA +AVRQMQNFPFYDKPMR+QYAK KSDC+AKA+G+FVP++KK+KQEEK ERKR  
Sbjct: 61  EVTAAGHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKQEEKVERKRED 120

Query: 121 DE---THQSAMPNGATAENGGSNATFRHANPSAPEA-TPNNILFIENLPHETSSMMLQVL 180
            +   T      NG +A NG    +F+   PS  E   PNNILFI+NLPHET+SMMLQ+L
Sbjct: 121 SQRPNTANGPSANGPSANNGVPAPSFQ---PSGQETMPPNNILFIQNLPHETTSMMLQLL 180

Query: 181 FQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           F+QYPGF+E+RMI+AKPGIAFVE+EDDVQ+S+AMQ LQGFKI PQ+PM ISFAKK
Sbjct: 181 FEQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQGFKITPQNPMVISFAKK 232

[Close]
BLAST of Cp4.1LG02g11120 vs. Swiss-Prot
Match: RU2B_ORYSI (U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. indica GN=OsI_11177 PE=3 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 3.4e-86
Identity = 171/233 (73.39%), Postives = 192/233 (82.40%), Query Frame = 1 

Query: 1   MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML GDIPPNQT+Y++NLNEKVKKEELKRSLYAL SQYGRILDVVALKTP+LRGQAWV FS
Sbjct: 1   MLSGDIPPNQTVYLRNLNEKVKKEELKRSLYALCSQYGRILDVVALKTPKLRGQAWVVFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEK-AERKRR 120
           E+TAA+NA R +Q F FY K MR+QYAKTKSDC+A  DGS  P+EK+KKQEEK AE+KRR
Sbjct: 61  EITAATNAFRGLQEFDFYGKRMRVQYAKTKSDCLATEDGSTAPKEKRKKQEEKAAEKKRR 120

Query: 121 TDETHQSAMPNGATAENG-GSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQ 180
            +E  QS  PN A   NG G  A+        P A PNNILFI+NLP ET+SMMLQ+LFQ
Sbjct: 121 AEEAQQSG-PNAAAQSNGTGYQASRLGKTSQEPPAPPNNILFIQNLPAETTSMMLQILFQ 180

Query: 181 QYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           QYPGFREVRMIEAKPGIAFVE+EDD QS +AMQALQGFKI P +PMAIS+AKK
Sbjct: 181 QYPGFREVRMIEAKPGIAFVEYEDDSQSMVAMQALQGFKITPYNPMAISYAKK 232

[Close]
BLAST of Cp4.1LG02g11120 vs. Swiss-Prot
Match: RU2B_ORYSJ (U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. japonica GN=Os03g0298800 PE=2 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 7.6e-86
Identity = 170/233 (72.96%), Postives = 192/233 (82.40%), Query Frame = 1 

Query: 1   MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML GDIPPNQT+Y++NLNEKVKKEELKRSLYAL SQYGRILDVVALKTP+LRGQAWV FS
Sbjct: 1   MLSGDIPPNQTVYLRNLNEKVKKEELKRSLYALCSQYGRILDVVALKTPKLRGQAWVVFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEK-AERKRR 120
           E+TAA+NA R +Q F FY K MR+QYAKT+SDC+A  DGS  P+EK+KKQEEK AE+KRR
Sbjct: 61  EITAATNAFRGLQEFDFYGKRMRVQYAKTRSDCLATEDGSTAPKEKRKKQEEKAAEKKRR 120

Query: 121 TDETHQSAMPNGATAENG-GSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQ 180
            +E  QS  PN A   NG G  A+        P A PNNILFI+NLP ET+SMMLQ+LFQ
Sbjct: 121 AEEAQQSG-PNAAAQSNGTGYQASRLGKTSQEPPAPPNNILFIQNLPAETTSMMLQILFQ 180

Query: 181 QYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           QYPGFREVRMIEAKPGIAFVE+EDD QS +AMQALQGFKI P +PMAIS+AKK
Sbjct: 181 QYPGFREVRMIEAKPGIAFVEYEDDSQSMVAMQALQGFKITPYNPMAISYAKK 232

[Close]
BLAST of Cp4.1LG02g11120 vs. Swiss-Prot
Match: RU1A_ARATH (U1 small nuclear ribonucleoprotein A OS=Arabidopsis thaliana GN=U1A PE=1 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 3.0e-66
Identity = 141/239 (59.00%), Postives = 177/239 (74.06%), Query Frame = 1 

Query: 5   DIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTA 64
           ++ PNQTIYI NLNEKVK +ELK+SL A+FSQ+G+IL+++A KT + +GQAWV F    +
Sbjct: 13  EVSPNQTIYINNLNEKVKLDELKKSLNAVFSQFGKILEILAFKTFKHKGQAWVVFDNTES 72

Query: 65  ASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRTDETH 124
           AS A+ +M NFPFYDK MRIQYAKTKSD VAKADG+FVPREK+K+ EEK   K++ D+ H
Sbjct: 73  ASTAIAKMNNFPFYDKEMRIQYAKTKSDVVAKADGTFVPREKRKRHEEKGGGKKKKDQHH 132

Query: 125 ---QSAMP-NGATAENGGSNATFRHA------NPSAPE--ATPNNILFIENLPHETSSMM 184
              Q  MP N A     G+              P+ PE  A PNNILF++NLPHET+ M+
Sbjct: 133 DSTQMGMPMNSAYPGVYGAAPPLSQVPYPGGMKPNMPEAPAPPNNILFVQNLPHETTPMV 192

Query: 185 LQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           LQ+LF QY GF+EVRMIEAKPGIAFVEF D++QS++AMQ LQGFKI  Q+ M I++AKK
Sbjct: 193 LQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAMQGLQGFKIQ-QNQMLITYAKK 250

[Close]
BLAST of Cp4.1LG02g11120 vs. TrEMBL
Match: A0A0A0LPT7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025950 PE=4 SV=1)

HSP 1 Score: 435.6 bits (1119), Expect = 3.6e-119
Identity = 222/231 (96.10%), Postives = 226/231 (97.84%), Query Frame = 1 

Query: 1   MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML GDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRT 120
           EVTAASNAVRQMQNFPFY+KPMRIQYAKTKSDC+AKADGSFVPREKKKKQEEKAE+KRR 
Sbjct: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPREKKKKQEEKAEKKRRA 120

Query: 121 DETHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY 180
           +ETHQSAMPNG T ENGGSNATFRHANPSA EATPNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 EETHQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]
BLAST of Cp4.1LG02g11120 vs. TrEMBL
Match: D7SJN7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g07530 PE=4 SV=1)

HSP 1 Score: 378.6 bits (971), Expect = 5.3e-102
Identity = 197/234 (84.19%), Postives = 210/234 (89.74%), Query Frame = 1 

Query: 1   MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML GDIPPNQ+IYIKNLNEKVKKEELKRSLY LFSQYGRILDVVALKTP+LRGQAWV FS
Sbjct: 1   MLSGDIPPNQSIYIKNLNEKVKKEELKRSLYCLFSQYGRILDVVALKTPKLRGQAWVVFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRT 120
           EVTAASNAVRQMQNFPFYDKPMR+QYAKTKSDCVAKADG+FVPREKKKKQEEKAE+KRR 
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRVQYAKTKSDCVAKADGTFVPREKKKKQEEKAEKKRRA 120

Query: 121 DETHQSAMPNGATAE-NGGSNATFRHANPSA--PEATPNNILFIENLPHETSSMMLQVLF 180
           +E  QS   NG  AE NGG    FR  N  A  PEA PNNILFI+NLPH+T+SMMLQVLF
Sbjct: 121 EEAQQSGNANGRNAETNGGPTPPFRQGNQGAREPEAAPNNILFIQNLPHQTTSMMLQVLF 180

Query: 181 QQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           QQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAM+ALQGFKI PQ+PMAI++AKK
Sbjct: 181 QQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMEALQGFKITPQNPMAIAYAKK 234

[Close]
BLAST of Cp4.1LG02g11120 vs. TrEMBL
Match: A0A067DUK7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g026902mg PE=4 SV=1)

HSP 1 Score: 374.8 bits (961), Expect = 7.6e-101
Identity = 194/232 (83.62%), Postives = 212/232 (91.38%), Query Frame = 1 

Query: 1   MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           M+ GDIPPNQTIYIKNLNEK+KKEELKRSLY LFSQYGRI DVVALKTP+LRGQAWV FS
Sbjct: 1   MITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRT 120
           EVTAASNAVRQMQNFPFYDKPMRIQYAK+KSDCVAK DGSFVPREKKKKQEEKAERKRR 
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRA 120

Query: 121 DETHQSAMPNGATAE-NGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQ 180
           +E  QS+M NG  A+ NGG+ A+FR+AN +   A PNNILFI+NLPHET+S ML++LFQQ
Sbjct: 121 EEAQQSSMANGTGAQSNGGTAASFRNAN-TQETAAPNNILFIQNLPHETTSSMLEMLFQQ 180

Query: 181 YPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           YPGF+EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKI PQ+PMAI+FAKK
Sbjct: 181 YPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231

[Close]
BLAST of Cp4.1LG02g11120 vs. TrEMBL
Match: V4T1I4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002361mg PE=4 SV=1)

HSP 1 Score: 372.1 bits (954), Expect = 5.0e-100
Identity = 192/232 (82.76%), Postives = 211/232 (90.95%), Query Frame = 1 

Query: 1   MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           M+ GDIPPNQTIYIKNLNEK+KKEELKRSLY LFSQYGRI DVVALKTP+LRGQAWV FS
Sbjct: 1   MITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRT 120
           EVTAASNAVRQMQNFPFYDKPMRIQYAK+KSDC+AK DGSFVPREKKKKQEEKAERKRR 
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCIAKEDGSFVPREKKKKQEEKAERKRRA 120

Query: 121 DETHQSAMPNGATAE-NGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQ 180
           +E  QS+M NG  A+ N G+ A+FR+AN +   A PNNILFI+NLPHET+S ML++LFQQ
Sbjct: 121 EEAQQSSMANGTGAQSNSGTAASFRNAN-TQEAAAPNNILFIQNLPHETTSSMLEMLFQQ 180

Query: 181 YPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           YPGF+EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKI PQ+PMAI+FAKK
Sbjct: 181 YPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231

[Close]
BLAST of Cp4.1LG02g11120 vs. TrEMBL
Match: A0A0D2MP29_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G150900 PE=4 SV=1)

HSP 1 Score: 367.1 bits (941), Expect = 1.6e-98
Identity = 187/232 (80.60%), Postives = 205/232 (88.36%), Query Frame = 1 

Query: 1   MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML  DIPPNQTIYIKNLNEK+KKEELKRSLYALFSQYGRILDVVALKTP+LRGQAWV F 
Sbjct: 1   MLTADIPPNQTIYIKNLNEKIKKEELKRSLYALFSQYGRILDVVALKTPKLRGQAWVVFD 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRT 120
           E+T+ASNA RQMQNFPFYDKPMRIQYAKTKSDC+AK DGSFVPREKKKKQEEKAERKRR 
Sbjct: 61  ELTSASNAFRQMQNFPFYDKPMRIQYAKTKSDCIAKNDGSFVPREKKKKQEEKAERKRRA 120

Query: 121 DETHQSAMPNGATAE-NGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQ 180
           +E  QSA PNG   + NGG  A   H N +A +A PNNILFI+NLPHET+SMMLQ+LF+Q
Sbjct: 121 EEAQQSAKPNGTGFQNNGGPKAPLHHGNLNAEQAAPNNILFIQNLPHETTSMMLQLLFEQ 180

Query: 181 YPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           YPGFREVRM+EAKPGIAFVE+ED+ QSS AMQ LQGFKI PQ+PMAI+FAKK
Sbjct: 181 YPGFREVRMVEAKPGIAFVEYEDEEQSSTAMQNLQGFKIAPQYPMAITFAKK 232

[Close]
BLAST of Cp4.1LG02g11120 vs. TAIR10
Match: AT1G06960.1 (AT1G06960.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 345.5 bits (885), Expect = 2.5e-95
Identity = 178/232 (76.72%), Postives = 202/232 (87.07%), Query Frame = 1 

Query: 1   MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML  DIPPNQ+IYIK++NEK+KKEELKRSLY LFSQ+GR+LDVVALKTP+LRGQAWV F+
Sbjct: 1   MLTADIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFT 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRT 120
           EVTAASNAVRQMQNFPFYDKPMRIQYAK+KSD V KA+GSFVP+EKK KQEEK ERKR  
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHA 120

Query: 121 DETHQSAMPNGATAENGGSNATFRHANPSAPEA-TPNNILFIENLPHETSSMMLQVLFQQ 180
           +ET Q +MPNGAT +NG     F+   PS  +   PNNILFI NLP ET+SMMLQ+LF+Q
Sbjct: 121 EETQQPSMPNGATTQNGMPVPPFQ---PSGQDTMPPNNILFIHNLPIETNSMMLQLLFEQ 180

Query: 181 YPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           YPGF+E+RMIEAKPGIAFVE+EDDVQSSMAMQALQGFKI PQ+PM +SFAKK
Sbjct: 181 YPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 229

[Close]
BLAST of Cp4.1LG02g11120 vs. TAIR10
Match: AT2G30260.1 (AT2G30260.1 U2 small nuclear ribonucleoprotein B)

HSP 1 Score: 329.3 bits (843), Expect = 1.9e-90
Identity = 170/235 (72.34%), Postives = 199/235 (84.68%), Query Frame = 1 

Query: 1   MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML  DIPPNQ+IYI+NLNE++KKEELKRSLY LFSQ+GRILDVVALKTP+LRGQAWV FS
Sbjct: 1   MLTADIPPNQSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRT 120
           EVTAA +AVRQMQNFPFYDKPMR+QYAK KSDC+AKA+G+FVP++KK+KQEEK ERKR  
Sbjct: 61  EVTAAGHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKQEEKVERKRED 120

Query: 121 DE---THQSAMPNGATAENGGSNATFRHANPSAPEA-TPNNILFIENLPHETSSMMLQVL 180
            +   T      NG +A NG    +F+   PS  E   PNNILFI+NLPHET+SMMLQ+L
Sbjct: 121 SQRPNTANGPSANGPSANNGVPAPSFQ---PSGQETMPPNNILFIQNLPHETTSMMLQLL 180

Query: 181 FQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           F+QYPGF+E+RMI+AKPGIAFVE+EDDVQ+S+AMQ LQGFKI PQ+PM ISFAKK
Sbjct: 181 FEQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQGFKITPQNPMVISFAKK 232

[Close]
BLAST of Cp4.1LG02g11120 vs. TAIR10
Match: AT2G47580.1 (AT2G47580.1 spliceosomal protein U1A)

HSP 1 Score: 253.1 bits (645), Expect = 1.7e-67
Identity = 141/239 (59.00%), Postives = 177/239 (74.06%), Query Frame = 1 

Query: 5   DIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTA 64
           ++ PNQTIYI NLNEKVK +ELK+SL A+FSQ+G+IL+++A KT + +GQAWV F    +
Sbjct: 13  EVSPNQTIYINNLNEKVKLDELKKSLNAVFSQFGKILEILAFKTFKHKGQAWVVFDNTES 72

Query: 65  ASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRTDETH 124
           AS A+ +M NFPFYDK MRIQYAKTKSD VAKADG+FVPREK+K+ EEK   K++ D+ H
Sbjct: 73  ASTAIAKMNNFPFYDKEMRIQYAKTKSDVVAKADGTFVPREKRKRHEEKGGGKKKKDQHH 132

Query: 125 ---QSAMP-NGATAENGGSNATFRHA------NPSAPE--ATPNNILFIENLPHETSSMM 184
              Q  MP N A     G+              P+ PE  A PNNILF++NLPHET+ M+
Sbjct: 133 DSTQMGMPMNSAYPGVYGAAPPLSQVPYPGGMKPNMPEAPAPPNNILFVQNLPHETTPMV 192

Query: 185 LQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           LQ+LF QY GF+EVRMIEAKPGIAFVEF D++QS++AMQ LQGFKI  Q+ M I++AKK
Sbjct: 193 LQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAMQGLQGFKIQ-QNQMLITYAKK 250

[Close]
BLAST of Cp4.1LG02g11120 vs. NCBI nr
Match: gi|449439191|ref|XP_004137370.1| (PREDICTED: U2 small nuclear ribonucleoprotein B'' 2-like [Cucumis sativus])

HSP 1 Score: 435.6 bits (1119), Expect = 5.2e-119
Identity = 222/231 (96.10%), Postives = 226/231 (97.84%), Query Frame = 1 

Query: 1   MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML GDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRT 120
           EVTAASNAVRQMQNFPFY+KPMRIQYAKTKSDC+AKADGSFVPREKKKKQEEKAE+KRR 
Sbjct: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPREKKKKQEEKAEKKRRA 120

Query: 121 DETHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY 180
           +ETHQSAMPNG T ENGGSNATFRHANPSA EATPNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 EETHQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]
BLAST of Cp4.1LG02g11120 vs. NCBI nr
Match: gi|659114937|ref|XP_008457301.1| (PREDICTED: U2 small nuclear ribonucleoprotein B'' 2-like [Cucumis melo])

HSP 1 Score: 433.0 bits (1112), Expect = 3.4e-118
Identity = 221/231 (95.67%), Postives = 225/231 (97.40%), Query Frame = 1 

Query: 1   MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML GDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRT 120
           EVTAASNAVRQMQNFPFY+KPMRIQYAKTKSDCVAKADG+FVPREKKKKQEEKAE+KRR 
Sbjct: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGTFVPREKKKKQEEKAEKKRRA 120

Query: 121 DETHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY 180
           +E HQSAMPNG T ENGGSNATFRHANPSA EATPNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 EEAHQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]
BLAST of Cp4.1LG02g11120 vs. NCBI nr
Match: gi|1009116350|ref|XP_015874724.1| (PREDICTED: U2 small nuclear ribonucleoprotein B'' 2-like [Ziziphus jujuba])

HSP 1 Score: 391.0 bits (1003), Expect = 1.5e-105
Identity = 200/232 (86.21%), Postives = 220/232 (94.83%), Query Frame = 1 

Query: 1   MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML GDIPPNQTIYIKNLNEK+KKEELKRSLYALFSQYGRILDVVALKTP+LRGQAWVAFS
Sbjct: 1   MLTGDIPPNQTIYIKNLNEKIKKEELKRSLYALFSQYGRILDVVALKTPKLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRT 120
           EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKA+GS+VPREKKKKQEEKAERKRRT
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKAEGSYVPREKKKKQEEKAERKRRT 120

Query: 121 DETHQSAMPNGATAENGGSNATFRHANPSAPEAT-PNNILFIENLPHETSSMMLQVLFQQ 180
           +ET QS +PNG +A+NG + A+FRH N S+ EA+ PNNILFIENLP ET+SMML++LF+Q
Sbjct: 121 EETQQSTVPNGTSAQNGATAASFRHGNSSSQEASAPNNILFIENLPLETNSMMLELLFRQ 180

Query: 181 YPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           YPGF+EVR+IEAKPGIAFVEFEDDVQSSMAMQALQGFKI PQ+PMAI+FAKK
Sbjct: 181 YPGFKEVRIIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 232

[Close]
BLAST of Cp4.1LG02g11120 vs. NCBI nr
Match: gi|225434417|ref|XP_002271864.1| (PREDICTED: U2 small nuclear ribonucleoprotein B'' 2 [Vitis vinifera])

HSP 1 Score: 378.6 bits (971), Expect = 7.6e-102
Identity = 197/234 (84.19%), Postives = 210/234 (89.74%), Query Frame = 1 

Query: 1   MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML GDIPPNQ+IYIKNLNEKVKKEELKRSLY LFSQYGRILDVVALKTP+LRGQAWV FS
Sbjct: 1   MLSGDIPPNQSIYIKNLNEKVKKEELKRSLYCLFSQYGRILDVVALKTPKLRGQAWVVFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRT 120
           EVTAASNAVRQMQNFPFYDKPMR+QYAKTKSDCVAKADG+FVPREKKKKQEEKAE+KRR 
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRVQYAKTKSDCVAKADGTFVPREKKKKQEEKAEKKRRA 120

Query: 121 DETHQSAMPNGATAE-NGGSNATFRHANPSA--PEATPNNILFIENLPHETSSMMLQVLF 180
           +E  QS   NG  AE NGG    FR  N  A  PEA PNNILFI+NLPH+T+SMMLQVLF
Sbjct: 121 EEAQQSGNANGRNAETNGGPTPPFRQGNQGAREPEAAPNNILFIQNLPHQTTSMMLQVLF 180

Query: 181 QQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           QQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAM+ALQGFKI PQ+PMAI++AKK
Sbjct: 181 QQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMEALQGFKITPQNPMAIAYAKK 234

[Close]
BLAST of Cp4.1LG02g11120 vs. NCBI nr
Match: gi|568827584|ref|XP_006468132.1| (PREDICTED: U2 small nuclear ribonucleoprotein B'' 2 [Citrus sinensis])

HSP 1 Score: 374.8 bits (961), Expect = 1.1e-100
Identity = 194/232 (83.62%), Postives = 212/232 (91.38%), Query Frame = 1 

Query: 1   MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           M+ GDIPPNQTIYIKNLNEK+KKEELKRSLY LFSQYGRI DVVALKTP+LRGQAWV FS
Sbjct: 1   MITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRT 120
           EVTAASNAVRQMQNFPFYDKPMRIQYAK+KSDCVAK DGSFVPREKKKKQEEKAERKRR 
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRA 120

Query: 121 DETHQSAMPNGATAE-NGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQ 180
           +E  QS+M NG  A+ NGG+ A+FR+AN +   A PNNILFI+NLPHET+S ML++LFQQ
Sbjct: 121 EEAQQSSMANGTGAQSNGGTAASFRNAN-TQETAAPNNILFIQNLPHETTSSMLEMLFQQ 180

Query: 181 YPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           YPGF+EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKI PQ+PMAI+FAKK
Sbjct: 181 YPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231

The following BLAST results are available for this feature:
BLAST of Cp4.1LG02g11120 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RU2B2_ARATH4.5e-9476.72U2 small nuclear ribonucleoprotein B'' 2 OS=Arabidopsis thaliana GN=At1g06960 PE... [more]
RU2B1_ARATH3.3e-8972.34U2 small nuclear ribonucleoprotein B'' OS=Arabidopsis thaliana GN=U2B'' PE=1 SV=... [more]
RU2B_ORYSI3.4e-8673.39U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. indica GN=OsI_1117... [more]
RU2B_ORYSJ7.6e-8672.96U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. japonica GN=Os03g0... [more]
RU1A_ARATH3.0e-6659.00U1 small nuclear ribonucleoprotein A OS=Arabidopsis thaliana GN=U1A PE=1 SV=1[more]
BLAST of Cp4.1LG02g11120 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LPT7_CUCSA3.6e-11996.10Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025950 PE=4 SV=1[more]
D7SJN7_VITVI5.3e-10284.19Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g07530 PE=4 SV=... [more]
A0A067DUK7_CITSI7.6e-10183.62Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g026902mg PE=4 SV=1[more]
V4T1I4_9ROSI5.0e-10082.76Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002361mg PE=4 SV=1[more]
A0A0D2MP29_GOSRA1.6e-9880.60Uncharacterized protein OS=Gossypium raimondii GN=B456_003G150900 PE=4 SV=1[more]
BLAST of Cp4.1LG02g11120 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G06960.12.5e-9576.72 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT2G30260.11.9e-9072.34 U2 small nuclear ribonucleoprotein B[more]
AT2G47580.11.7e-6759.00 spliceosomal protein U1A[more]
BLAST of Cp4.1LG02g11120 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449439191|ref|XP_004137370.1|5.2e-11996.10PREDICTED: U2 small nuclear ribonucleoprotein B'' 2-like [Cucumis sativus][more]
gi|659114937|ref|XP_008457301.1|3.4e-11895.67PREDICTED: U2 small nuclear ribonucleoprotein B'' 2-like [Cucumis melo][more]
gi|1009116350|ref|XP_015874724.1|1.5e-10586.21PREDICTED: U2 small nuclear ribonucleoprotein B'' 2-like [Ziziphus jujuba][more]
gi|225434417|ref|XP_002271864.1|7.6e-10284.19PREDICTED: U2 small nuclear ribonucleoprotein B'' 2 [Vitis vinifera][more]
gi|568827584|ref|XP_006468132.1|1.1e-10083.62PREDICTED: U2 small nuclear ribonucleoprotein B'' 2 [Citrus sinensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0017069snRNA binding
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
Vocabulary: Biological Process
TermDefinition
GO:0000398mRNA splicing, via spliceosome
Vocabulary: INTERPRO
TermDefinition
IPR024888U1 small nuclear ribonucleoprotein A/U2 small nuclear ribonucleoprotein B''
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0008150 biological_process
cellular_component GO:0030529 intracellular ribonucleoprotein complex
cellular_component GO:0019013 viral nucleocapsid
cellular_component GO:0005575 cellular_component
cellular_component GO:0005685 U1 snRNP
cellular_component GO:0005686 U2 snRNP
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0017069 snRNA binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0035614 snRNA stem-loop binding
molecular_function GO:0030619 U1 snRNA binding
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG02g11120.1Cp4.1LG02g11120.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 12..82
score: 1.8E-9coord: 159..219
score: 1.7
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 11..85
score: 8.9E-13coord: 158..227
score: 3.6
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 157..231
score: 13.294coord: 10..89
score: 14
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 147..231
score: 5.7E-23coord: 7..92
score: 1.0
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 154..221
score: 3.74E-26coord: 8..99
score: 3.74
IPR024888U1 small nuclear ribonucleoprotein A/U2 small nuclear ribonucleoprotein B''PANTHERPTHR10501U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN Bcoord: 1..231
score: 4.2E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG02g11120Cucsa.111900Cucumber (Gy14) v1cgycpeB0261
Cp4.1LG02g11120CmaCh13G000270Cucurbita maxima (Rimu)cmacpeB239
Cp4.1LG02g11120CmaCh01G007120Cucurbita maxima (Rimu)cmacpeB490
Cp4.1LG02g11120CmoCh01G007390Cucurbita moschata (Rifu)cmocpeB448
Cp4.1LG02g11120CmoCh13G000160Cucurbita moschata (Rifu)cmocpeB206
Cp4.1LG02g11120Cla008105Watermelon (97103) v1cpewmB552
Cp4.1LG02g11120Csa1G025950Cucumber (Chinese Long) v2cpecuB533
Cp4.1LG02g11120MELO3C020490Melon (DHL92) v3.5.1cpemeB497
Cp4.1LG02g11120ClCG03G000140Watermelon (Charleston Gray)cpewcgB504
Cp4.1LG02g11120CSPI01G04730Wild cucumber (PI 183967)cpecpiB535
Cp4.1LG02g11120Lsi02G012160Bottle gourd (USVL1VR-Ls)cpelsiB451
Cp4.1LG02g11120MELO3C020490.2Melon (DHL92) v3.6.1cpemedB590
Cp4.1LG02g11120CsaV3_1G004710Cucumber (Chinese Long) v3cpecucB0665
Cp4.1LG02g11120Bhi08G000353Wax gourdcpewgoB0709
Cp4.1LG02g11120CsGy1G004600Cucumber (Gy14) v2cgybcpeB098
Cp4.1LG02g11120Carg07032Silver-seed gourdcarcpeB0738
Cp4.1LG02g11120Carg26956Silver-seed gourdcarcpeB0460
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG02g11120Cp4.1LG20g07660Cucurbita pepo (Zucchini)cpecpeB434
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG02g11120Bottle gourd (USVL1VR-Ls)cpelsiB444
Cp4.1LG02g11120Watermelon (Charleston Gray)cpewcgB502
Cp4.1LG02g11120Watermelon (97103) v1cpewmB550
Cp4.1LG02g11120Melon (DHL92) v3.5.1cpemeB494
Cp4.1LG02g11120Melon (DHL92) v3.6.1cpemedB586
Cp4.1LG02g11120Wax gourdcpewgoB0702