Cla97C03G050950.1 (mRNA) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C03G050950.1
Type	mRNA
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	U2 small nuclear ribonucleoprotein B'' 2-like
Location	Cla97Chr03 : 165287 .. 168066 (-)
Sequence length	696

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTATCGGGGGATATACCGCCTAACCAGACCATATACATCAAGAATCTCAATGAGAAGGTCAAGAAAGAAGGTGACTCATTCTTAGCTTTTCGCTTAACCTTACTCTATTCCTTCCGTAAACGTCTTTTCTTCTGTTCGTTAAGTGTACAACTTAGTATAATTCAAGTGATCTCCGGCACATTTTATCTTTGTCATTTCGCCGTGGGCTCTCAAAATTCATGCTACTGTCGGTTTCCCCCGGGGGAAGGGGGGGGGGTTATTTTGGCGAAGGTCGGTTTGTTTTTGTTACATTATTTGATATTTCTGATGATGCCCAACTATCATAGTTGAAATTTTGTTTTTAGGGTGAAGGAGCTGCTAGCTTGAAATTTTAGTTTGGATTTGGAGACGGCTACTTGCTTTACCCGTTCCCGTAGCATTTGGGATTTTGCTTACTATTTTGGTTGCTTAGTGTTCAGTTTTTGACAATATTACATCACGTGTGGAGGGGAGGGGGTTATTTGAACCTACGTCCTTTTAGTGTTCAGATTTCGATGGTATACTAATTTTCTCCCCCTTGGACAGAGTTGAAGAGATCCCTTTATGCTTTGTTTTCTCAATATGGAAGGATCCTTGATGTTGTTGCCTTGAAGACACCGAGGCTTCGAGGGCAAGCATGGGTTGCATTTAGCGAAGTGACTGCAGCTAGCAATGCTGTGCGGCAGATGCAAAATTTCCCATTCTATGAAAAACCTATGGTTGGTCTTTAGCTGATCACATTTTCTGAACTTGCTTTTCATAGTCTTTTCATGGCCTTTCATCTATGGATTTTTCTAGTGCACTTTGAATTTTGTTGGGTAACTGTGGACAGTTCGCTTGTCAACGGGATTGGATCCTAATTGTGCTTCAATGAGTGTTATGTGGAGAGCGTCAAGTGAATATCTATACACAATCACACTCAATTATGCTCAATATTGTGCCAATTTAGCTGCTTCGCATGTCCGAAATAACGTCTTAATTTTGAGTAATTTCAATGGATAGAACTTTTAGGGGTAATAATTGTGTGAATACCAACATTTTTAAAGAATTGCAAATATAACAAAATTTATCAGTGATAGACTCTATCGTTGATAGACTGTTACCAACGATATGGGCTATCACTAATAGACTCTGAGAGTTGGATTTAAAATTTCCTATATCTGCAAATTTTTTTAAATTGTGTATATTTGCTTATACTTTGGACCTGATTTCTATATTTGGAACTGCCTCCTTAATTTTATTGGATATGTTGGTTTGTATATTGGTTATGTGCCTGATTTGAGCATTTTGAGATCTTTCTTTGTAACTCCAGTATATCGGACATCTCTTTTTTCAATGAATGTCATCTGTCATGAATTACAAAGCAGTGCTTAGAATGTTGTTGCCATCAGATCTTCGGTCTTTATTGTAACTTGGACAAAGGGAGTTCATTTCTCCTTGTTCTAATGTGGGTATAATAAAGGGCCTAGAGGGAATAAGTTCAATCCATGATAGGGCACCTACTTGGGGTAATACCCTACGAGTTTTTTTTTGACATGTTGTAAGGTCAAATGGGTTATAGTCGAGATGTACACAAACTGACCCAAATACTTGCACATATCAAAAAAAGGAAAAAACAAACATGTCTGGAGATGTAACCATGATTCTGTTAGGAAGAAACAAGTTTACTATTATTTTTTTCCCTTTTAAATTTCACTCTTTTTTTTTTTGTTTCATCTTGGAACTTTGTGTACCATCTTCATCATACAACTTATTCTGATGTTTAATATGATGATGCCTTTCTGTTGACCATCTCAAAAATATAAAGTTGACTTTTGTTGTTTCTTTTGCAGAGAATTCAATATGCCAAAACCAAATCAGATTGTGTTGCTAAAGCTGACGGAAGCTTTGTGCCAAGGGAGAAGAAAAAGAAGCAAGAGGAAAAAGGTGATTGTAACTGTATATTATCTTTAAGTTAGTAGATCGACAGTATATTTTTACTATGGTTTTTTGAAATGGTTCACATAACCTCTCATTTTCTTATTGCATTGCTTTTGAAATATCTCAAGGGTTTTAAACTGGTTTATGTTCCTGATTATCTTATTATTTGCTTATCCAGCTGAAAAAAAGCGACGTGCTGAAGAAGCACACCAATCTGCGATGCCCAACGGAACAACTGCTGAGAATGGAGGTTCAAATGTAAGTTTATCTCCACCCTTATTTTATTTTTTGTGATGTAAAATGTTTGTTTTCCTTCTTCATATGAGCTGTATCGTATTAATTGTTTTCACGGGAAGTGGTCCCAAACATAAACTGTGTGAGTCTTGTTTGGATGGCGTGGTTCTCTGGTTAATTGTTTGTTTCTTCACATCTGTTAGAAAGTCATTGATGTCTATTCCAATTAGATTTCACCTTAGTGCCCCTTAGATCAGGCAATGTTAACCAACACTTTTCCATAATTATTTTTGCTAAGAAAGCCTCTTCGTTGTGTGTCATTTTTGCAGGCCACATTCCGTCATGCAAATCCAAGTGCTGCAGAAGCTACTCCAAACAACATACTATTTATTGAGAATTTGCCACATGAAACGTCTAGTATGATGTTGCAAGTCCTCTTCCAACAATATCCTGGATTCAGGGAAGTCCGGATGATTGAAGCAAAGCCGGGTATTGCTTTTGTTGAGTTTGAAGACGATGTTCAATCCTCCATGGCGATGCAGGCTCTTCAAGGCTTTAAAATTGACCCCCAACATCCCATGGCTATCTCTTTTGCAAAGAAGTAA

mRNA sequence

ATGTTATCGGGGGATATACCGCCTAACCAGACCATATACATCAAGAATCTCAATGAGAAGGTCAAGAAAGAAGAGTTGAAGAGATCCCTTTATGCTTTGTTTTCTCAATATGGAAGGATCCTTGATGTTGTTGCCTTGAAGACACCGAGGCTTCGAGGGCAAGCATGGGTTGCATTTAGCGAAGTGACTGCAGCTAGCAATGCTGTGCGGCAGATGCAAAATTTCCCATTCTATGAAAAACCTATGAGAATTCAATATGCCAAAACCAAATCAGATTGTGTTGCTAAAGCTGACGGAAGCTTTGTGCCAAGGGAGAAGAAAAAGAAGCAAGAGGAAAAAGCTGAAAAAAAGCGACGTGCTGAAGAAGCACACCAATCTGCGATGCCCAACGGAACAACTGCTGAGAATGGAGGTTCAAATGCCACATTCCGTCATGCAAATCCAAGTGCTGCAGAAGCTACTCCAAACAACATACTATTTATTGAGAATTTGCCACATGAAACGTCTAGTATGATGTTGCAAGTCCTCTTCCAACAATATCCTGGATTCAGGGAAGTCCGGATGATTGAAGCAAAGCCGGGTATTGCTTTTGTTGAGTTTGAAGACGATGTTCAATCCTCCATGGCGATGCAGGCTCTTCAAGGCTTTAAAATTGACCCCCAACATCCCATGGCTATCTCTTTTGCAAAGAAGTAA

Coding sequence (CDS)

ATGTTATCGGGGGATATACCGCCTAACCAGACCATATACATCAAGAATCTCAATGAGAAGGTCAAGAAAGAAGAGTTGAAGAGATCCCTTTATGCTTTGTTTTCTCAATATGGAAGGATCCTTGATGTTGTTGCCTTGAAGACACCGAGGCTTCGAGGGCAAGCATGGGTTGCATTTAGCGAAGTGACTGCAGCTAGCAATGCTGTGCGGCAGATGCAAAATTTCCCATTCTATGAAAAACCTATGAGAATTCAATATGCCAAAACCAAATCAGATTGTGTTGCTAAAGCTGACGGAAGCTTTGTGCCAAGGGAGAAGAAAAAGAAGCAAGAGGAAAAAGCTGAAAAAAAGCGACGTGCTGAAGAAGCACACCAATCTGCGATGCCCAACGGAACAACTGCTGAGAATGGAGGTTCAAATGCCACATTCCGTCATGCAAATCCAAGTGCTGCAGAAGCTACTCCAAACAACATACTATTTATTGAGAATTTGCCACATGAAACGTCTAGTATGATGTTGCAAGTCCTCTTCCAACAATATCCTGGATTCAGGGAAGTCCGGATGATTGAAGCAAAGCCGGGTATTGCTTTTGTTGAGTTTGAAGACGATGTTCAATCCTCCATGGCGATGCAGGCTCTTCAAGGCTTTAAAATTGACCCCCAACATCCCATGGCTATCTCTTTTGCAAAGAAGTAA

Protein sequence

MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAEKKRRAEEAHQSAMPNGTTAENGGSNATFRHANPSAAEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK

Homology

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BLAST of Cla97C03G050950.1 vs. NCBI nr
Match: XP_022949507.1 (U2 small nuclear ribonucleoprotein B'' 2-like [Cucurbita moschata] >XP_022998346.1 U2 small nuclear ribonucleoprotein B'' 2-like [Cucurbita maxima])

HSP 1 Score: 399.8 bits (1026), Expect = 6.2e-108
Identity = 223/231 (96.54%), Postives = 224/231 (96.97%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML GDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREXXXXXXXXXXXXXXX 120
           EVTAASNAVRQMQNFPFY+KPMRIQYAKTKSDCVAKADGSFVPREXXXXXXXXXXXXXXX
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXMPNGTTAENGGSNATFRHANPSAAEATPNNILFIENLPHETSSMMLQVLFQQY 180
           XXX    MPNG TAENGGSNATFRHANPSA EATPNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 XXXHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]

BLAST of Cla97C03G050950.1 vs. NCBI nr
Match: XP_023525708.1 (U2 small nuclear ribonucleoprotein B'' 2-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023525709.1 U2 small nuclear ribonucleoprotein B'' 2-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 399.8 bits (1026), Expect = 6.2e-108
Identity = 221/231 (95.67%), Postives = 222/231 (96.10%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML GDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREXXXXXXXXXXXXXXX 120
           EVTAASNAVRQMQNFPFY+KPMRIQYAKTKSDCVAKADGSFVPREXXXXXXXXXXXXXXX
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXMPNGTTAENGGSNATFRHANPSAAEATPNNILFIENLPHETSSMMLQVLFQQY 180
           X      MPNG TAENGGSNATFRHANPSA EATPNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 XETHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]

BLAST of Cla97C03G050950.1 vs. NCBI nr
Match: XP_023519411.1 (U2 small nuclear ribonucleoprotein B'' 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 399.1 bits (1024), Expect = 1.1e-107
Identity = 203/231 (87.88%), Postives = 207/231 (89.61%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           M SGDIPPNQ+IYIKNLNE+VKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MYSGDIPPNQSIYIKNLNEEVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREXXXXXXXXXXXXXXX 120
           EVTAASNAVRQMQNFPFY+KPMRIQYAKTKSDC+AKADGSFVPRE               
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCIAKADGSFVPREKKKKLEEKAERKQRT 120

Query: 121 XXXXXXXMPNGTTAENGGSNATFRHANPSAAEATPNNILFIENLPHETSSMMLQVLFQQY 180
                  MPNGTTAENGGSNATFRHANPS AEATPNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 EDAHRSTMPNGTTAENGGSNATFRHANPSTAEATPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]

BLAST of Cla97C03G050950.1 vs. NCBI nr
Match: XP_022964939.1 (U2 small nuclear ribonucleoprotein B'' 2-like [Cucurbita moschata])

HSP 1 Score: 397.9 bits (1021), Expect = 2.4e-107
Identity = 202/231 (87.45%), Postives = 207/231 (89.61%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLSGDIPPNQ+IYIKNLNE+VKKEELKRSLYALFS YGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLSGDIPPNQSIYIKNLNEEVKKEELKRSLYALFSHYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREXXXXXXXXXXXXXXX 120
           EVTAASNAVRQMQNFPFY+KPMRIQYAKTKSDC+AKADGSFVPRE               
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCIAKADGSFVPREKKKKLVEKAERKQRT 120

Query: 121 XXXXXXXMPNGTTAENGGSNATFRHANPSAAEATPNNILFIENLPHETSSMMLQVLFQQY 180
                  MPNGTTAENGGSNATFRHANPS AEATPNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 EDAHQSSMPNGTTAENGGSNATFRHANPSTAEATPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           PGFREVRMIE+KPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIESKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]

BLAST of Cla97C03G050950.1 vs. NCBI nr
Match: XP_022970660.1 (U2 small nuclear ribonucleoprotein B'' 2-like [Cucurbita maxima])

HSP 1 Score: 392.5 bits (1007), Expect = 9.9e-106
Identity = 199/231 (86.15%), Postives = 205/231 (88.74%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLSGDIPPNQ+IYIKNLNE+VKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLSGDIPPNQSIYIKNLNEEVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREXXXXXXXXXXXXXXX 120
           EVTAASNAVRQM+NFPFY+KPMRIQYAKTKSDC+AK DGSFVPRE               
Sbjct: 61  EVTAASNAVRQMKNFPFYDKPMRIQYAKTKSDCIAKTDGSFVPREKKKKLEEKAERKQRT 120

Query: 121 XXXXXXXMPNGTTAENGGSNATFRHANPSAAEATPNNILFIENLPHETSSMMLQVLFQQY 180
                  MPNGTTAE GGSNATFRHANPS AEATPNNILFIENLPHETSS+MLQVLFQQY
Sbjct: 121 EDAHQSAMPNGTTAETGGSNATFRHANPSTAEATPNNILFIENLPHETSSIMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           PGFREVRMIE KPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEVKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]

BLAST of Cla97C03G050950.1 vs. TrEMBL
Match: tr|A0A1S3C564|A0A1S3C564_CUCME (U2 small nuclear ribonucleoprotein B'' 2-like OS=Cucumis melo OX=3656 GN=LOC103497024 PE=4 SV=1)

HSP 1 Score: 376.7 bits (966), Expect = 3.7e-101
Identity = 218/231 (94.37%), Postives = 219/231 (94.81%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREXXXXXXXXXXXXXXX 120
           EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADG+FVPREXXXXXXXXXXXXXXX
Sbjct: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGTFVPREXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXMPNGTTAENGGSNATFRHANPSAAEATPNNILFIENLPHETSSMMLQVLFQQY 180
           XXXXXXX           SNATFRHANPSA EATPNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 XXXXXXXXXXXXXXXXXXSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]

BLAST of Cla97C03G050950.1 vs. TrEMBL
Match: tr|A0A0A0LPT7|A0A0A0LPT7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G025950 PE=4 SV=1)

HSP 1 Score: 375.2 bits (962), Expect = 1.1e-100
Identity = 217/231 (93.94%), Postives = 218/231 (94.37%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREXXXXXXXXXXXXXXX 120
           EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDC+AKADGSFVPR XXXXXXXXXXXXXXX
Sbjct: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPRXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXMPNGTTAENGGSNATFRHANPSAAEATPNNILFIENLPHETSSMMLQVLFQQY 180
           XXXXXXX           SNATFRHANPSA EATPNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 XXXXXXXXXXXXXXXXXXSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]

BLAST of Cla97C03G050950.1 vs. TrEMBL
Match: tr|A0A2P5CT04|A0A2P5CT04_PARAD (U1 small nuclear ribonucleoprotein A/U2 small nuclear ribonucleoprotein B OS=Parasponia andersonii OX=3476 GN=PanWU01x14_127070 PE=4 SV=1)

HSP 1 Score: 351.3 bits (900), Expect = 1.7e-93
Identity = 204/232 (87.93%), Postives = 217/232 (93.53%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLSGDIPPNQTIYIKNLNEK+KKEELKRSLYALFSQYGRILDVVALKTP+LRGQAW+AFS
Sbjct: 1   MLSGDIPPNQTIYIKNLNEKIKKEELKRSLYALFSQYGRILDVVALKTPKLRGQAWIAFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREXXXXXXXXXXXXXXX 120
           EV AASNAVRQMQNFPFY+KPMRIQYAKTKSDCVAKA+GS+VPREXXXXXXXXXXXXXXX
Sbjct: 61  EVPAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKAEGSYVPREXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXMPNGTTAENGGSNATFRHANPSAAE-ATPNNILFIENLPHETSSMMLQVLFQQ 180
           XXXXXXX   GT AENG + A FR  N SA E A PNNILFIENLPHET+SMML++LF+Q
Sbjct: 121 XXXXXXXXXXGTRAENGTTPAPFRQGNASAQEAAAPNNILFIENLPHETTSMMLELLFRQ 180

Query: 181 YPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           YPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKI PQ+PMAI+FAKK
Sbjct: 181 YPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 232

[Close]

BLAST of Cla97C03G050950.1 vs. TrEMBL
Match: tr|A0A2P5AB59|A0A2P5AB59_9ROSA (U1 small nuclear ribonucleoprotein A/U2 small nuclear ribonucleoprotein B OS=Trema orientalis OX=63057 GN=TorRG33x02_354460 PE=4 SV=1)

HSP 1 Score: 349.7 bits (896), Expect = 4.9e-93
Identity = 204/232 (87.93%), Postives = 216/232 (93.10%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLSGDIPPNQTIYIKNLNEK+KKEELKRSLYALFSQYGRILDVVALKT +LRGQAW+AFS
Sbjct: 1   MLSGDIPPNQTIYIKNLNEKIKKEELKRSLYALFSQYGRILDVVALKTSKLRGQAWIAFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREXXXXXXXXXXXXXXX 120
           EV AASNAVRQMQNFPFY+KPMRIQYAKTKSDCVAKA+GS+VPREXXXXXXXXXXXXXXX
Sbjct: 61  EVPAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKAEGSYVPREXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXMPNGTTAENGGSNATFRHANPSAAE-ATPNNILFIENLPHETSSMMLQVLFQQ 180
           XXXXXXX   GT AENG + A FR  N SA E A PNNILFIENLPHET+SMML++LFQQ
Sbjct: 121 XXXXXXXXXXGTRAENGTTPAPFRQGNASAQEAAAPNNILFIENLPHETTSMMLELLFQQ 180

Query: 181 YPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           YPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKI PQ+PMAI+FAKK
Sbjct: 181 YPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 232

[Close]

BLAST of Cla97C03G050950.1 vs. TrEMBL
Match: tr|D7SJN7|D7SJN7_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0004g07530 PE=4 SV=1)

HSP 1 Score: 345.1 bits (884), Expect = 1.2e-91
Identity = 202/234 (86.32%), Postives = 214/234 (91.45%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLSGDIPPNQ+IYIKNLNEKVKKEELKRSLY LFSQYGRILDVVALKTP+LRGQAWV FS
Sbjct: 1   MLSGDIPPNQSIYIKNLNEKVKKEELKRSLYCLFSQYGRILDVVALKTPKLRGQAWVVFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREXXXXXXXXXXXXXXX 120
           EVTAASNAVRQMQNFPFY+KPMR+QYAKTKSDCVAKADG+FVPREXXXXXXXXXXXXXXX
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRVQYAKTKSDCVAKADGTFVPREXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXMPNGTTAE-NGGSNATFRHANPSA--AEATPNNILFIENLPHETSSMMLQVLF 180
           XXXXXXX  NG  AE NGG    FR  N  A   EA PNNILFI+NLPH+T+SMMLQVLF
Sbjct: 121 XXXXXXXNANGRNAETNGGPTPPFRQGNQGAREPEAAPNNILFIQNLPHQTTSMMLQVLF 180

Query: 181 QQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           QQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAM+ALQGFKI PQ+PMAI++AKK
Sbjct: 181 QQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMEALQGFKITPQNPMAIAYAKK 234

[Close]

BLAST of Cla97C03G050950.1 vs. Swiss-Prot
Match: sp|Q8H1S6|RU2B2_ARATH (U2 small nuclear ribonucleoprotein B'' 2 OS=Arabidopsis thaliana OX=3702 GN=At1g06960 PE=1 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 2.9e-85
Identity = 162/232 (69.83%), Postives = 186/232 (80.17%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML+ DIPPNQ+IYIK++NEK+KKEELKRSLY LFSQ+GR+LDVVALKTP+LRGQAWV F+
Sbjct: 1   MLTADIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFT 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREXXXXXXXXXXXXXXX 120
           EVTAASNAVRQMQNFPFY+KPMRIQYAK+KSD V KA+GSFVP+E               
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHA 120

Query: 121 XXXXXXXMPNGTTAENGGSNATFRHANPSAAEA-TPNNILFIENLPHETSSMMLQVLFQQ 180
                  MPNG T +NG     F+   PS  +   PNNILFI NLP ET+SMMLQ+LF+Q
Sbjct: 121 EETQQPSMPNGATTQNGMPVPPFQ---PSGQDTMPPNNILFIHNLPIETNSMMLQLLFEQ 180

Query: 181 YPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           YPGF+E+RMIEAKPGIAFVE+EDDVQSSMAMQALQGFKI PQ+PM +SFAKK
Sbjct: 181 YPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 229

[Close]

BLAST of Cla97C03G050950.1 vs. Swiss-Prot
Match: sp|O22922|RU2B1_ARATH (U2 small nuclear ribonucleoprotein B'' OS=Arabidopsis thaliana OX=3702 GN=U2B'' PE=1 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 8.3e-80
Identity = 169/232 (72.84%), Postives = 195/232 (84.05%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML+ DIPPNQ+IYI+NLNE++KKEELKRSLY LFSQ+GRILDVVALKTP+LRGQAWV FS
Sbjct: 1   MLTADIPPNQSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREXXXXXXXXXXXXXXX 120
           EVTAA +AVRQMQNFPFY+KPMR+QYAK KSDC+AKA+G+FVP++    XXXXXXXXXXX
Sbjct: 61  EVTAAGHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKXXXXXXXXXXX 120

Query: 121 XXXXXXXMPNGTTAENGGSNATFRHANPSAAEA-TPNNILFIENLPHETSSMMLQVLFQQ 180
           XXXXXXX                    PS  E   PNNILFI+NLPHET+SMMLQ+LF+Q
Sbjct: 121 XXXXXXXXXXXXXXXXXXXGVPAPSFQPSGQETMPPNNILFIQNLPHETTSMMLQLLFEQ 180

Query: 181 YPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           YPGF+E+RMI+AKPGIAFVE+EDDVQ+S+AMQ LQGFKI PQ+PM ISFAKK
Sbjct: 181 YPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQGFKITPQNPMVISFAKK 232

[Close]

BLAST of Cla97C03G050950.1 vs. Swiss-Prot
Match: sp|B8AM21|RU2B_ORYSI (U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. indica OX=39946 GN=OsI_11177 PE=3 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 6.2e-75
Identity = 173/232 (74.57%), Postives = 190/232 (81.90%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLSGDIPPNQT+Y++NLNEKVKKEELKRSLYAL SQYGRILDVVALKTP+LRGQAWV FS
Sbjct: 1   MLSGDIPPNQTVYLRNLNEKVKKEELKRSLYALCSQYGRILDVVALKTPKLRGQAWVVFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREXXXXXXXXXXXXXXX 120
           E+TAA+NA R +Q F FY K MR+QYAKTKSDC+A  DGS     XXXXXXXXXXXXXXX
Sbjct: 61  EITAATNAFRGLQEFDFYGKRMRVQYAKTKSDCLATEDGSTXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXMPNGTTAENG-GSNATFRHANPSAAEATPNNILFIENLPHETSSMMLQVLFQQ 180
           XXXXXXX        NG G  A+          A PNNILFI+NLP ET+SMMLQ+LFQQ
Sbjct: 121 XXXXXXXXXXXXXXSNGTGYQASRLGKTSQEPPAPPNNILFIQNLPAETTSMMLQILFQQ 180

Query: 181 YPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           YPGFREVRMIEAKPGIAFVE+EDD QS +AMQALQGFKI P +PMAIS+AKK
Sbjct: 181 YPGFREVRMIEAKPGIAFVEYEDDSQSMVAMQALQGFKITPYNPMAISYAKK 232

[Close]

BLAST of Cla97C03G050950.1 vs. Swiss-Prot
Match: sp|Q10MR0|RU2B_ORYSJ (U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0298800 PE=2 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 1.4e-74
Identity = 172/232 (74.14%), Postives = 190/232 (81.90%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLSGDIPPNQT+Y++NLNEKVKKEELKRSLYAL SQYGRILDVVALKTP+LRGQAWV FS
Sbjct: 1   MLSGDIPPNQTVYLRNLNEKVKKEELKRSLYALCSQYGRILDVVALKTPKLRGQAWVVFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREXXXXXXXXXXXXXXX 120
           E+TAA+NA R +Q F FY K MR+QYAKT+SDC+A  DGS     XXXXXXXXXXXXXXX
Sbjct: 61  EITAATNAFRGLQEFDFYGKRMRVQYAKTRSDCLATEDGSTXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXMPNGTTAENG-GSNATFRHANPSAAEATPNNILFIENLPHETSSMMLQVLFQQ 180
           XXXXXXX        NG G  A+          A PNNILFI+NLP ET+SMMLQ+LFQQ
Sbjct: 121 XXXXXXXXXXXXXXSNGTGYQASRLGKTSQEPPAPPNNILFIQNLPAETTSMMLQILFQQ 180

Query: 181 YPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           YPGFREVRMIEAKPGIAFVE+EDD QS +AMQALQGFKI P +PMAIS+AKK
Sbjct: 181 YPGFREVRMIEAKPGIAFVEYEDDSQSMVAMQALQGFKITPYNPMAISYAKK 232

[Close]

BLAST of Cla97C03G050950.1 vs. Swiss-Prot
Match: sp|A2Y0J7|RU1A_ORYSI (U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. indica OX=39946 GN=OsI_18512 PE=3 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 4.3e-60
Identity = 141/234 (60.26%), Postives = 170/234 (72.65%), Query Frame = 0


Query: 7   PPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAAS 66
           PPN TIYI NLNEK+K EELK+SL A+FSQ+G+ILDV+A KT + +GQAWV F +V +A+
Sbjct: 20  PPNVTIYINNLNEKIKLEELKKSLRAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASAT 79

Query: 67  NAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREXXXXXXXXXXXXXXXXXXXXX 126
            A++ MQ+FPF+ KPMRIQYAKTKSD +AKADG+FVPRE   XXXXXXXXXXXXXX    
Sbjct: 80  EALKSMQDFPFHNKPMRIQYAKTKSDIIAKADGTFVPRERRKXXXXXXXXXXXXXXHHDV 139

Query: 127 XMPN-GTTAENGGSNATFRHANPSAAE--------ATPNNILFIENLPHETSSMMLQVLF 186
                G  A  G   A      P A            PNNILF++NLPHET+ MMLQ+LF
Sbjct: 140 SQVGLGVNAYPGVYGAPPLSQLPFAGAQKVMMPEIIVPNNILFVQNLPHETTPMMLQMLF 199

Query: 187 QQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
            QYPGF+EVRM+EAKPGIAFVE+ D+ Q++ AM  LQGFKI   + M IS+AKK
Sbjct: 200 CQYPGFKEVRMVEAKPGIAFVEYGDEGQATAAMNHLQGFKITKDNQMLISYAKK 253

[Close]

BLAST of Cla97C03G050950.1 vs. TAIR10
Match: AT1G06960.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 316.2 bits (809), Expect = 1.6e-86
Identity = 162/232 (69.83%), Postives = 186/232 (80.17%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML+ DIPPNQ+IYIK++NEK+KKEELKRSLY LFSQ+GR+LDVVALKTP+LRGQAWV F+
Sbjct: 1   MLTADIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFT 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREXXXXXXXXXXXXXXX 120
           EVTAASNAVRQMQNFPFY+KPMRIQYAK+KSD V KA+GSFVP+E               
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHA 120

Query: 121 XXXXXXXMPNGTTAENGGSNATFRHANPSAAEA-TPNNILFIENLPHETSSMMLQVLFQQ 180
                  MPNG T +NG     F+   PS  +   PNNILFI NLP ET+SMMLQ+LF+Q
Sbjct: 121 EETQQPSMPNGATTQNGMPVPPFQ---PSGQDTMPPNNILFIHNLPIETNSMMLQLLFEQ 180

Query: 181 YPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           YPGF+E+RMIEAKPGIAFVE+EDDVQSSMAMQALQGFKI PQ+PM +SFAKK
Sbjct: 181 YPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 229

[Close]

BLAST of Cla97C03G050950.1 vs. TAIR10
Match: AT2G30260.1 (U2 small nuclear ribonucleoprotein B)

HSP 1 Score: 298.1 bits (762), Expect = 4.6e-81
Identity = 169/232 (72.84%), Postives = 195/232 (84.05%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML+ DIPPNQ+IYI+NLNE++KKEELKRSLY LFSQ+GRILDVVALKTP+LRGQAWV FS
Sbjct: 1   MLTADIPPNQSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREXXXXXXXXXXXXXXX 120
           EVTAA +AVRQMQNFPFY+KPMR+QYAK KSDC+AKA+G+FVP++    XXXXXXXXXXX
Sbjct: 61  EVTAAGHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKXXXXXXXXXXX 120

Query: 121 XXXXXXXMPNGTTAENGGSNATFRHANPSAAEA-TPNNILFIENLPHETSSMMLQVLFQQ 180
           XXXXXXX                    PS  E   PNNILFI+NLPHET+SMMLQ+LF+Q
Sbjct: 121 XXXXXXXXXXXXXXXXXXXGVPAPSFQPSGQETMPPNNILFIQNLPHETTSMMLQLLFEQ 180

Query: 181 YPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           YPGF+E+RMI+AKPGIAFVE+EDDVQ+S+AMQ LQGFKI PQ+PM ISFAKK
Sbjct: 181 YPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQGFKITPQNPMVISFAKK 232

[Close]

BLAST of Cla97C03G050950.1 vs. TAIR10
Match: AT2G47580.1 (spliceosomal protein U1A)

HSP 1 Score: 229.6 bits (584), Expect = 2.0e-60
Identity = 149/239 (62.34%), Postives = 180/239 (75.31%), Query Frame = 0


Query: 5   DIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTA 64
           ++ PNQTIYI NLNEKVK +ELK+SL A+FSQ+G+IL+++A KT + +GQAWV F    +
Sbjct: 13  EVSPNQTIYINNLNEKVKLDELKKSLNAVFSQFGKILEILAFKTFKHKGQAWVVFDNTES 72

Query: 65  ASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREXXXXXXXXXXXXXXXXXXX 124
           AS A+ +M NFPFY+K MRIQYAKTKSD VAKADG+FVPREXXXXXXXXXXXXXXXXXXX
Sbjct: 73  ASTAIAKMNNFPFYDKEMRIQYAKTKSDVVAKADGTFVPREXXXXXXXXXXXXXXXXXXX 132

Query: 125 XXXM---------PNGTTAENGGSNATF---RHANPSAAEATPNNILFIENLPHETSSMM 184
           XX           P    A    S   +      N   A A PNNILF++NLPHET+ M+
Sbjct: 133 XXTQMGMPMNSAYPGVYGAAPPLSQVPYPGGMKPNMPEAPAPPNNILFVQNLPHETTPMV 192

Query: 185 LQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           LQ+LF QY GF+EVRMIEAKPGIAFVEF D++QS++AMQ LQGFKI  Q+ M I++AKK
Sbjct: 193 LQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAMQGLQGFKIQ-QNQMLITYAKK 250

[Close]

BLAST of Cla97C03G050950.1 vs. TAIR10
Match: AT2G23350.1 (poly(A) binding protein 4)

HSP 1 Score: 45.4 bits (106), Expect = 5.4e-05
Identity = 27/92 (29.35%), Postives = 47/92 (51.09%), Query Frame = 0


Query: 12  IYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTP--RLRGQAWVAFSEVTAASNAV 71
           +Y+KNL++ V  E+L+     LF+++G I     ++ P    +G  +VAFS  + AS  +
Sbjct: 330 LYVKNLDDTVTDEKLRE----LFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVL 389

Query: 72  RQMQNFPFYEKPMRIQYAKTKSDCVAKADGSF 102
            +M       KP+ +  A+ K +  AK    F
Sbjct: 390 NEMNGKMVGGKPLYVALAQRKEERRAKLQAQF 417

[Close]

BLAST of Cla97C03G050950.1 vs. TAIR10
Match: AT3G61860.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 41.6 bits (96), Expect = 7.8e-04
Identity = 27/79 (34.18%), Postives = 49/79 (62.03%), Query Frame = 0


Query: 12 IYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQ 71
          +++ N   + ++ +L+R    LF +YGR+ D V +K+    G A+V F +   A +A+R+
Sbjct: 4  VFVGNFEYETRQSDLER----LFDKYGRV-DRVDMKS----GYAFVYFEDERDAEDAIRK 63

Query: 72 MQNFPF-YEK-PMRIQYAK 89
          + NFPF YEK  + +++AK
Sbjct: 64 LDNFPFGYEKRRLSVEWAK 73

The following BLAST results are available for this feature:

BLAST of Cla97C03G050950.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022949507.1	6.2e-108	96.54	U2 small nuclear ribonucleoprotein B'' 2-like [Cucurbita moschata] >XP_022998346...	[more]
XP_023525708.1	6.2e-108	95.67	U2 small nuclear ribonucleoprotein B'' 2-like isoform X1 [Cucurbita pepo subsp. ...	[more]
XP_023519411.1	1.1e-107	87.88	U2 small nuclear ribonucleoprotein B'' 2-like [Cucurbita pepo subsp. pepo]	[more]
XP_022964939.1	2.4e-107	87.45	U2 small nuclear ribonucleoprotein B'' 2-like [Cucurbita moschata]	[more]
XP_022970660.1	9.9e-106	86.15	U2 small nuclear ribonucleoprotein B'' 2-like [Cucurbita maxima]	[more]

BLAST of Cla97C03G050950.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C564\|A0A1S3C564_CUCME	3.7e-101	94.37	U2 small nuclear ribonucleoprotein B'' 2-like OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
tr\|A0A0A0LPT7\|A0A0A0LPT7_CUCSA	1.1e-100	93.94	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G025950 PE=4 SV=1	[more]
tr\|A0A2P5CT04\|A0A2P5CT04_PARAD	1.7e-93	87.93	U1 small nuclear ribonucleoprotein A/U2 small nuclear ribonucleoprotein B OS=Par...	[more]
tr\|A0A2P5AB59\|A0A2P5AB59_9ROSA	4.9e-93	87.93	U1 small nuclear ribonucleoprotein A/U2 small nuclear ribonucleoprotein B OS=Tre...	[more]
tr\|D7SJN7\|D7SJN7_VITVI	1.2e-91	86.32	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0004g07530 PE=4 SV=...	[more]

BLAST of Cla97C03G050950.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8H1S6\|RU2B2_ARATH	2.9e-85	69.83	U2 small nuclear ribonucleoprotein B'' 2 OS=Arabidopsis thaliana OX=3702 GN=At1g...	[more]
sp\|O22922\|RU2B1_ARATH	8.3e-80	72.84	U2 small nuclear ribonucleoprotein B'' OS=Arabidopsis thaliana OX=3702 GN=U2B'' ...	[more]
sp\|B8AM21\|RU2B_ORYSI	6.2e-75	74.57	U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. indica OX=39946 GN...	[more]
sp\|Q10MR0\|RU2B_ORYSJ	1.4e-74	74.14	U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
sp\|A2Y0J7\|RU1A_ORYSI	4.3e-60	60.26	U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. indica OX=39946 GN=O...	[more]

BLAST of Cla97C03G050950.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G06960.1	1.6e-86	69.83	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G30260.1	4.6e-81	72.84	U2 small nuclear ribonucleoprotein B	[more]
AT2G47580.1	2.0e-60	62.34	spliceosomal protein U1A	[more]
AT2G23350.1	5.4e-05	29.35	poly(A) binding protein 4	[more]
AT3G61860.1	7.8e-04	34.18	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla97C03G050950	Cla97C03G050950	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla97C03G050950.1	Cla97C03G050950.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla97C03G050950.1.CDS.5	Cla97C03G050950.1.CDS.5	CDS
Cla97C03G050950.1.CDS.4	Cla97C03G050950.1.CDS.4	CDS
Cla97C03G050950.1.CDS.3	Cla97C03G050950.1.CDS.3	CDS
Cla97C03G050950.1.CDS.2	Cla97C03G050950.1.CDS.2	CDS
Cla97C03G050950.1.CDS.1	Cla97C03G050950.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla97C03G050950.1.exon.5	Cla97C03G050950.1.exon.5	exon
Cla97C03G050950.1.exon.4	Cla97C03G050950.1.exon.4	exon
Cla97C03G050950.1.exon.3	Cla97C03G050950.1.exon.3	exon
Cla97C03G050950.1.exon.2	Cla97C03G050950.1.exon.2	exon
Cla97C03G050950.1.exon.1	Cla97C03G050950.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 104..126
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 126..146
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 98..146
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 99..124
None	No IPR available	PANTHER	PTHR10501:SF32	U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B''-RELATED	coord: 7..231
None	No IPR available	PANTHER	PTHR10501	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B	coord: 7..231
None	No IPR available	CDD	cd12246	RRM1_U1A_like	coord: 11..88 e-value: 2.16467E-49 score: 157.69
None	No IPR available	CDD	cd12247	RRM2_U1A_like	coord: 155..227 e-value: 4.73197E-37 score: 125.374
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 11..85 e-value: 2.5E-12 score: 57.0 coord: 158..227 e-value: 3.6E-10 score: 49.8
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 159..219 e-value: 1.7E-12 score: 46.8 coord: 12..82 e-value: 4.1E-9 score: 36.0
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 10..89 score: 14.215
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 157..231 score: 13.294
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 150..231 e-value: 3.7E-22 score: 80.1
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 4..123 e-value: 1.2E-29 score: 104.5
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 8..99 coord: 154..221