Carg17563 (gene) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATTTTTCGTCTGAATCTCTTCAATTCCTATGGAAACCATTCTCTTTCCTCACTCTCTCTCTCCTCTCTTCAACCCTAACCCTAACCCTTCCACTTCCAAGAATCTCTTCCCCGTTTCCTCCCAATCCAGATCAAAATTTCAATGTTTCTGTAAACCTATTTCTGTTTCGCCCAAATCTCTCAAATCTTCTCTCCCAGTTCCTTCGATTTGGCTCTCCCATCTCCAACATGGCCTCGCGGCGCTGTCGATTTCTTTGGCGCTCAACTTCTCCCCGTTGTTGGCCGGTGGGATTGCCGTAGCGTCTGAGTTTGATGTGCTCAATGATGGGCCGCCGAAGGAGTCGCATCTGGTGGACGATGCTGGAGTTCTCAGTAGGGTCACGAAGTCGGATTTGAAGAGGCTGTTGACGGATTTGGAGTTGAGGAAGAATTTTCATATCGATTTCGTCACTGTTAGAAAGCTCACTGTGAGTTCTCTGCCTTTGAATTCTTGAGAGCGAAACTAAATTTGTGTTGTTCGGAGAATCTATGGGTTGAATGTTTAATGCAGATATATAGTTATAGAATAATTTGAACTTTTGTTTATCATGGGAAGAAAATGGTAATGATCTGGTGTATGTTTATGAGAATTTGATAATCTTTCTGAGACCCATTTTTAGAAAGTGGGCATCATATTGTGATGGGTTGTTTAAAATGATGGCCACAATATTGAGAAATACCTTCTCTGGTCTAAAGTCTTGGCTACTCACATATTGTCCTTTTGGATTTTTTCTTTCGGATTTTTCTAAGGAGAGGTTCCCATATCTTTATAAAGAATGAATTGTATACTCCTCAACTAATGTGAGGTCTCACAATCCACCCCCTTTGGAGCCCAGCGTCATCGTTCCCCTCTCCAATTGATGTGGGACCCCCTAATCGACCCCCCTTCGGGACCCAGCGTCCTCGTTCCCCTCTCCAATTGATGTGGGACTCCCTAATCGACCCCCCTTCGGGGCCCAGCGTCCTCGTTCCCCTCTCCAATTGATGTAAGATCCCCTAATCGACCCCCCTTCGGGGCCCAACGTCCTCGTTCCCCTCTCCAATTGATGTGGGACCCCCTAATCGACCCCCCTTCGGGGCCCAACGTCAGTGCTGGCACATCGCCTAGTGTCCACCCTCCTTTGGGGTTCAAGCCCAAGCCCAAGCCCAAGCCCAAGCCCATTGCTAGCAGATATTGTCCTCTTTGGACAGCCTCTTTTCGAGCGCTTCCCTCAAGGTTTTTAAAACGGATCTCCTAAGGGAAGGTTTCTACACCTTCATAAAGAATACTTTGTTCTTCTCCCTAACTGATGTGAGATCTCACAATCCACCCCCTTCGGGTCCACCATCCTTGCTAGCACTCGTTCACCTCTCCAATCGACGTGGGATCCCCAATCCACCCCCCTTTGGGGCCCAGCGTCCTCGTAGGCACACCACCTGATGTCCACCCCCCTTTCAGGGTTCAGCCTCCTCGCTGGCACATTGCCTGGTGTCTAGCTCTAATACCATTTGTAACAGTCCAAGTCCACCGCTAGCAGATATTGTCCTTTTTTGGTTTTCCCATTCGGGCTTCCCTTCAAGGTTTTTAAAACTAGTCTTCTAGGTAAAGGTTTCCACACCCTTATAAAAAATGACTTGTTCTACTCCCCAACCAATGTGGGATCTCACAATGGTCTTCCTCAAAGAGTAGTAAGGTGGGCCATGAGCACAAGAAACATAGGTTAAATTATAAGTTTACGCTTTGATCACTTAAGTTTGTGTCTAAAGGGTCTCGAAACGTTATGAACTGCTGATTGTAGAGCAAAGCTGATGCATTTGAGTATGCTGATCAAGTTTTGGAGCGATGGTATCCCACTGTGGAAGACGGCAACAATAAGGGCATAGTTGTGCTTGTCACCAGTCAAAAGGAAGGAGCCATTACTGGTGGCCCTGCGTTTATCCAAGCTGTTGGAGAAAACATTCTTGATGCCACAGTAACCGAGAATCTCCCAGGTAAACTAAGCTAACTACCACTTATTTCACTCTTCACTTTCCAAGCTACAATTTCTACCATTTCTTGCTTAAATTGAACACATTACAACTAGTAGATGCCTTAACTATACTCGTAGTCGTGTCTCCGTGTTTATGCGAGTTGACCTTGCATATGAGTTTCTCGACTTCAAAGGAAAAGAAAACCACAAACAAACTTGTATGTATCTTAGCACGTGTCAATATCCCAACTAGCGTTGTTGTTTCTACTAGGTCTGTGAGCTCTAAAAACGTCGAATATGTTGAGGACTCGTTAAACACAAATGAAAAGTTTCTGGATTTATTAGACATTGTTTGAAGCCTAGAAACCAAATAGACACGAATTTCATAGTTCAGGGACTTGTTAGGCACAAACTTGAGGAACTTCATCTTAATATTGTTCTCGGTTGCTTTTGCTCTAAGCTCTGATACTAAATGTAACCGTCCAAACCCACCGCTAGCAGATATTGCCCTTTTTGGGCTTTCTTTTCCGGGCTTCCCCGCAAGGTTTTAAAACATGTTTGCTAGGAAGAGGTTTCCACACCTTTCCCCTCTCCAATCGATGTGGGATCTCACAATCCACCCCGTTGGTGGTTCAACGTCCTCGCTAGCATATTGCCCGGTGTCTAGCTTTGATACCATTTGTAACAGTCCAAGTTCACCGCTAGCAGTTATTGTCCTCTTTGGGCTTTCACTTCCGGGTCTCTCCTTGAGGTTTTAAAACGTGTTTGCTGGGTCTTGAAGGGGGAGTACGAAACATTCTTTATAGGGGTGTAGAAACCTTTCTCTAGCAGACACGTTTTAAAACTGTGAGACTAACGGTGATACATAACGGGCCAAAGCGGACAATATCTAGTGTGGGCTTGAGACGTTACACTAAAACACTAAAACACCAGGATGAATGCATCAAAGAAGTGAATAATATGCTTGTAGTTGCTACTTCATTTATGAAACTGCAGGGTGAGTAAGGTTTGTTATGTAACTGCAGTATTAGCTACCGATGAAAAATACAATGAAGCCATATATAGCAGTGCGAAACGGCTAGTTGCTGCCATTGATGGCTTGCCAGATCCTGGAGGTCCTTCATTCAAGGAAAATAAGCGAGAATCTAACTTCAAATCAAGGGAAGAAACAGAGGAGAAAAGAGGTCAGTTTTCTCTTGTTGTTGGAGGTTTGTTAGTGATAGCCTTTGTTGTTCCTATGGCTCAGTATTATGCTTATGTATCCAAGAAGTGAAAGAAACATGTAAGACCCAGATCTTCCCATCTATTTCCTTCACATTCAAGTGTATAAATTTGATGCTGTATGATCGCTACAAGATGATTTGCAAGAAACCTGTTATGAAACATAGTTGAGTTTTTTTGTT ATTTTTCGTCTGAATCTCTTCAATTCCTATGGAAACCATTCTCTTTCCTCACTCTCTCTCTCCTCTCTTCAACCCTAACCCTAACCCTTCCACTTCCAAGAATCTCTTCCCCGTTTCCTCCCAATCCAGATCAAAATTTCAATGTTTCTGTAAACCTATTTCTGTTTCGCCCAAATCTCTCAAATCTTCTCTCCCAGTTCCTTCGATTTGGCTCTCCCATCTCCAACATGGCCTCGCGGCGCTGTCGATTTCTTTGGCGCTCAACTTCTCCCCGTTGTTGGCCGGTGGGATTGCCGTAGCGTCTGAGTTTGATGTGCTCAATGATGGGCCGCCGAAGGAGTCGCATCTGGTGGACGATGCTGGAGTTCTCAGTAGGGTCACGAAGTCGGATTTGAAGAGGCTGTTGACGGATTTGGAGTTGAGGAAGAATTTTCATATCGATTTCGTCACTGTTAGAAAGCTCACTAGCAAAGCTGATGCATTTGAGTATGCTGATCAAGTTTTGGAGCGATGGTATCCCACTGTGGAAGACGGCAACAATAAGGGCATAGTTGTGCTTGTCACCAGTCAAAAGGAAGGAGCCATTACTGGTGGCCCTGCGTTTATCCAAGCTGTTGGAGAAAACATTCTTGATGCCACAGTAACCGAGAATCTCCCAGTATTAGCTACCGATGAAAAATACAATGAAGCCATATATAGCAGTGCGAAACGGCTAGTTGCTGCCATTGATGGCTTGCCAGATCCTGGAGGTCCTTCATTCAAGGAAAATAAGCGAGAATCTAACTTCAAATCAAGGGAAGAAACAGAGGAGAAAAGAGGTCAGTTTTCTCTTGTTGTTGGAGGTTTGTTAGTGATAGCCTTTGTTGTTCCTATGGCTCAGTATTATGCTTATGTATCCAAGAAGTGAAAGAAACATGTAAGACCCAGATCTTCCCATCTATTTCCTTCACATTCAAGTGTATAAATTTGATGCTGTATGATCGCTACAAGATGATTTGCAAGAAACCTGTTATGAAACATAGTTGAGTTTTTTTGTT ATGGAAACCATTCTCTTTCCTCACTCTCTCTCTCCTCTCTTCAACCCTAACCCTAACCCTTCCACTTCCAAGAATCTCTTCCCCGTTTCCTCCCAATCCAGATCAAAATTTCAATGTTTCTGTAAACCTATTTCTGTTTCGCCCAAATCTCTCAAATCTTCTCTCCCAGTTCCTTCGATTTGGCTCTCCCATCTCCAACATGGCCTCGCGGCGCTGTCGATTTCTTTGGCGCTCAACTTCTCCCCGTTGTTGGCCGGTGGGATTGCCGTAGCGTCTGAGTTTGATGTGCTCAATGATGGGCCGCCGAAGGAGTCGCATCTGGTGGACGATGCTGGAGTTCTCAGTAGGGTCACGAAGTCGGATTTGAAGAGGCTGTTGACGGATTTGGAGTTGAGGAAGAATTTTCATATCGATTTCGTCACTGTTAGAAAGCTCACTAGCAAAGCTGATGCATTTGAGTATGCTGATCAAGTTTTGGAGCGATGGTATCCCACTGTGGAAGACGGCAACAATAAGGGCATAGTTGTGCTTGTCACCAGTCAAAAGGAAGGAGCCATTACTGGTGGCCCTGCGTTTATCCAAGCTGTTGGAGAAAACATTCTTGATGCCACAGTAACCGAGAATCTCCCAGTATTAGCTACCGATGAAAAATACAATGAAGCCATATATAGCAGTGCGAAACGGCTAGTTGCTGCCATTGATGGCTTGCCAGATCCTGGAGGTCCTTCATTCAAGGAAAATAAGCGAGAATCTAACTTCAAATCAAGGGAAGAAACAGAGGAGAAAAGAGGTCAGTTTTCTCTTGTTGTTGGAGGTTTGTTAGTGATAGCCTTTGTTGTTCCTATGGCTCAGTATTATGCTTATGTATCCAAGAAGTGA METILFPHSLSPLFNPNPNPSTSKNLFPVSSQSRSKFQCFCKPISVSPKSLKSSLPVPSIWLSHLQHGLAALSISLALNFSPLLAGGIAVASEFDVLNDGPPKESHLVDDAGVLSRVTKSDLKRLLTDLELRKNFHIDFVTVRKLTSKADAFEYADQVLERWYPTVEDGNNKGIVVLVTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAIDGLPDPGGPSFKENKRESNFKSREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK
BLAST of Carg17563 vs. NCBI nr
Match: XP_022937634.1 (UPF0603 protein At1g54780, chloroplastic-like [Cucurbita moschata]) HSP 1 Score: 568.5 bits (1464), Expect = 1.3e-158 Identity = 292/292 (100.00%), Postives = 292/292 (100.00%), Query Frame = 0
BLAST of Carg17563 vs. NCBI nr
Match: XP_023521578.1 (UPF0603 protein At1g54780, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023537526.1 UPF0603 protein At1g54780, chloroplastic-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023537527.1 UPF0603 protein At1g54780, chloroplastic-like isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 561.6 bits (1446), Expect = 1.6e-156 Identity = 288/292 (98.63%), Postives = 290/292 (99.32%), Query Frame = 0
BLAST of Carg17563 vs. NCBI nr
Match: XP_022965867.1 (UPF0603 protein At1g54780, chloroplastic-like [Cucurbita maxima]) HSP 1 Score: 557.0 bits (1434), Expect = 3.8e-155 Identity = 286/292 (97.95%), Postives = 288/292 (98.63%), Query Frame = 0
BLAST of Carg17563 vs. NCBI nr
Match: XP_022946287.1 (UPF0603 protein At1g54780, chloroplastic-like [Cucurbita moschata]) HSP 1 Score: 496.9 bits (1278), Expect = 4.7e-137 Identity = 265/297 (89.23%), Postives = 270/297 (90.91%), Query Frame = 0
BLAST of Carg17563 vs. NCBI nr
Match: XP_022999120.1 (UPF0603 protein At1g54780, chloroplastic-like [Cucurbita maxima]) HSP 1 Score: 493.8 bits (1270), Expect = 4.0e-136 Identity = 265/301 (88.04%), Postives = 270/301 (89.70%), Query Frame = 0
BLAST of Carg17563 vs. TAIR10
Match: AT1G54780.1 (thylakoid lumen 18.3 kDa protein) HSP 1 Score: 379.4 bits (973), Expect = 2.0e-105 Identity = 203/292 (69.52%), Postives = 237/292 (81.16%), Query Frame = 0
BLAST of Carg17563 vs. Swiss-Prot
Match: sp|Q9ZVL6|U603_ARATH (UPF0603 protein At1g54780, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g54780 PE=1 SV=1) HSP 1 Score: 379.4 bits (973), Expect = 3.6e-104 Identity = 203/292 (69.52%), Postives = 237/292 (81.16%), Query Frame = 0
BLAST of Carg17563 vs. Swiss-Prot
Match: sp|A2Y4G9|U603_ORYSI (UPF0603 protein OsI_019212, chloroplastic OS=Oryza sativa subsp. indica OX=39946 GN=OsI_19898 PE=3 SV=2) HSP 1 Score: 352.1 bits (902), Expect = 6.1e-96 Identity = 178/232 (76.72%), Postives = 202/232 (87.07%), Query Frame = 0
BLAST of Carg17563 vs. Swiss-Prot
Match: sp|Q6ATY4|U603_ORYSJ (UPF0603 protein Os05g0401100, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0401100 PE=3 SV=1) HSP 1 Score: 352.1 bits (902), Expect = 6.1e-96 Identity = 178/232 (76.72%), Postives = 202/232 (87.07%), Query Frame = 0
BLAST of Carg17563 vs. TrEMBL
Match: tr|A0A1S3C0U8|A0A1S3C0U8_CUCME (UPF0603 protein At1g54780, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495349 PE=4 SV=1) HSP 1 Score: 492.7 bits (1267), Expect = 5.9e-136 Identity = 261/298 (87.58%), Postives = 272/298 (91.28%), Query Frame = 0
BLAST of Carg17563 vs. TrEMBL
Match: tr|A0A0A0LGA5|A0A0A0LGA5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G020910 PE=4 SV=1) HSP 1 Score: 479.6 bits (1233), Expect = 5.1e-132 Identity = 251/298 (84.23%), Postives = 271/298 (90.94%), Query Frame = 0
BLAST of Carg17563 vs. TrEMBL
Match: tr|A0A2N9J993|A0A2N9J993_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS29479 PE=4 SV=1) HSP 1 Score: 446.4 bits (1147), Expect = 4.8e-122 Identity = 233/297 (78.45%), Postives = 260/297 (87.54%), Query Frame = 0
BLAST of Carg17563 vs. TrEMBL
Match: tr|A0A2P4HCJ9|A0A2P4HCJ9_QUESU (Upf0603 protein, chloroplastic OS=Quercus suber OX=58331 GN=CFP56_66735 PE=4 SV=1) HSP 1 Score: 441.0 bits (1133), Expect = 2.0e-120 Identity = 232/297 (78.11%), Postives = 263/297 (88.55%), Query Frame = 0
BLAST of Carg17563 vs. TrEMBL
Match: tr|A0A2R6RBH4|A0A2R6RBH4_ACTCH (UPF0603 protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc09470 PE=4 SV=1) HSP 1 Score: 438.7 bits (1127), Expect = 1.0e-119 Identity = 229/297 (77.10%), Postives = 256/297 (86.20%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene: None |