Carg12882 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg12882
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Beta-propeller domain-containing protein, methanol dehydrogenase
Location	Cucurbita_argyrosperma_scaffold_043 : 945615 .. 949523 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTGAATCTCTCCATCTTCCCATGGAAACCATTCTCTCTCCACACACACTCTCTCCTCTCCTCAACCCCAAACCCTCCTCTCCCAAGAATCTCTTCCCTTATTCCTTCCAACCCAGAAGACATTTTGTTTCTTTCTCTAACCCCATTTCGTTCTCTCTCAAAAACCCCTCTCCCAAGTCTCTCCGATCATCGCTCCCAGTTCCCTCGAATTGGTTCTCCCATCTCCAACATGGGTTGGCGGCGCTAGCAATTTCTTTAGCGCTCAACTTTTCCCCATTGTTGGCCACCCACAATGCTCTGGCGTCTGAATTTGATGTGCTCAATGATGGGCCGCCGAAGGAGTCGCATCTAGTGGACGATGCTGGAGTTCTCAGTAGAGTCACGAAGTCGGATTTGAAGAGGCTGTTGACGGATTTGGAGTCGAGGAAGAATTTTCACATTGATTTTGTCACTGTTAGAAAGCTTACTGTAAGTCCTTCAAATTCTTGATAGAGAAACAAATCGTAGAACTCATGAAAATAATTTGATTTTTGTTATTGTGGGAAGAGAATTGTACTTTATGTTAGAGGAAATGTGTTAATAGGCTGATGATTGTTTATGAAGATTTGAAAATCTTACTGAAGAGTGATTATCAGAAAGTGGGTATCATATTGTGATGGATTGTTTGAAATGAAGGCTACCAAAACTTGGAATGTTTAGAGATATCACCTCTAACCTAAGGTCTTGGTTTAAACTCTTTGGGGGAAACTTAGTAATCCTTCTTGTCTCTCAACGTTGGTTTTGGTTGAGCAGTGCTTATCCAAAGAGTGGTAAGGTGGGCGGTAATGGTTGCAAACAGCAAGAAGTGGGCTCGGGAATCTAATATAGTGAGATCTCACATTGGTTGGAGAGAACAACGAAGCATTCTTTATAAGGGTGTGGAAACCTCTCCCCAGTAGACGCGTTTTAAAAATCTTGAGGGGAAGCTTGGAAGGGAAAACAAACCCAAAGTGGACAATATCTGCTAGCGGTGGACTTGAGCTATTACAAATGGTATCAGAGTTAGACATCGGGCGATGTGCCTGTGAGGACGCTAGGCCCCCACGGGGGGTGGATTGTGAGATCCTACATCGGTTGGAGAAGAGAACGAAACATTCTTTATAAGAGTGTGGAAACCTCTCCCTAACAGATGCATTTTAAAAACCTTGAGGGGAAGGTTGAAAGGGAAAGCCCAAAGCGGACAATATTTGCTAGCGATGTGTTTGAGCTATTATAAATGGTATCAGAGCTAGACATAGGGCGGTGTGCCAGCGAGGACACTAGGCCCCCAAAGGAGGTGGATTGTGAGATCCTACATCTGTTGGGGAGGAGAACAAAACATTCTTTATAAGGGTGTGGAAACCTCTCTCTAGCAGACGTGTCTTAAAAACCTTGTGGGAAGCCCAGAAGGGAAAGCTCAAAGCAGACAATATTTGCTAGCGGTGGGTTTGAGCTATTACAAATGGTATCAAAGCCAGACACCGGGCAGTGTGCCAGTGAGAATGCTAGGCCTCCAAAGGGGGTATATTGTGAGATCCCACGTCGATTGGGGAAGAGAACGAAACATTCTTTATAAGGGTGTGGAAACCTCTCCCTAGCAGACGTGTTTTAAAAACCTTGAGGGGAACTCCAGAAGGGAAAGCCCAGAGCAGACAATATTTCCTAGCGGCGGGCTTGAGCTATTACAAATGGTATCATGGACAGACATTGGGCAGTGTGCCAGCGAGGATGCTAGGCCCTCAAAAGGGGTGGATTGTGAGATCCCACATCGGTTAGAGAGGAGAACAAAACATTGCTTACAAGAGTGTGGAAACCTCTCCTTACCAGACGCTGAAAGGGAAAGCCCAAAGAGGACAATACCTGCTAGCGGTGGGCTTGAATCGTTACAAAAATATATGAAAATGCCTAACGAAAAGATCTCTATGAACTCTGATATGAATTTATCAACTGCTGGATGCAGAGCAAAGCTGATGCGTTTGAGTATGCTGATCAAGTTTTGGAGCGTTGGTATCCCACTGTGGAAGATGGCAACAACAAAGGTATAGTTGTTCTTGTCACCAGTCAGAAAGAAGGAGCCATTACTGGTGGGCCTGCCTTTATCCAAGCAGTTGGAGAAAACATACTTGATGCTACAGTAACAGAGAACCTCCCAGGTACCACTTCCTCCACTTATGAATGTTATGTCAAATCTGTCATGAACGTTGAACAAAGCTCCCACTTAAAGCTGCTAATTTCCATCAGCTTCCTTAGCTAACAATCTCCACTGCCTCTTGCTCAACTTACATTGTAACACATTACAACTAATAGGTGCCTTAAGTGCATTGGTATCTTGTTGTTGAACTTAAAATCGAGTGTCTGCAATAGCCCAAGTTCACCGCTAGCACATATTGTCCGCTTTGGCTCATTACAAATCGCCGTCAGCCTCACAGTTTTAAAACGCATCTGCTAGGGAGAGGTTTCCACGCCCTTATAAGGAATGTTTCGTTCCCCTCTCCAACTGATATGGGATCTCCCAATCCACCCTTCTTGGAGGCCCAACGTCCTCATTGATACACCGCCTGGTGTTTGGCTTTGACACCATTTGTTATAGTCAAAACCCACCGCTAGTAGATATTGTCCGCTTTGCTCGTTACATATCGCTATTAGCCTCACGGTTTTAAAACGCGTCTGCTAGGGAGAGGTTTCCACACCCTTATAAGGAATGCTTCATTTCCCTCTTCAACCGATGTGGGATCTCACACTGTGTGTTTGATACGAGTCGCCCTTGCTTATAAGTTTCTCATTTTTTAAGGAAAAGTGTAAATAGCCCAGGCCCACCGCTAGGAGAAATTGTCGTTTTTGGACTCTCTTTCGAGCTTCCTCTCAAGGTCTTAAAATGCGTCTGGTAAGGAGAGGTTTCCACATCCTTATAAGCAATAAGCAGTGCTTTGTTCTCCTCTCCAACTGATGTGGGATCTCACAATCCACCCCCCTTGGGGGCCCAACATTCTCACTGGCACACCGCCCGGTGTCTGGCTCTGATACTATTTGTAACAGCTCAAGCCCACCGCTAACAAATATTGTTTTCTTTGGGCTTTCCCTTCTGGGCTTCCTCTCAAGGTTATAAAACGCGTCTGGTAGGTAGAGATTTTCACACTTTTATAAGCAATGTTTCATTCTCCTCTCTAACCGATATAAGATCTCACAATCCACTGAGCCCTCAAAGGGGATGGATTATGAGATCCCATATCGGTTGGAGAGGGGGACAAAACGTTTCTTATAAGGGTGTGGAAAACCTCTCCCTAGTAGATGCGTTTTAAAATTGTGAGACTGACGGTGATACGTAGTGGGCCAAAGCGGACAATATCTTCTAGCGGTAGGCTTGAACTGTTACAAAAAGAAAACCACAAATGAACTGTTGTTGTTTTGTATTGCTACCCCATATATGGAGTGCTTTGTTCGAAGCATTTCTAACCCTATGTGAATTATGGTTGTAGATGTTAGTTTATGACAAAGTGCAGATTGAGTAAGATTGTTTATTATGCAACTGCAGTCTTAGCTACTGATGAAAAATACAATGAAGCCATATATAGCAGCGCGAAGCGGTTAGTTGCTGCCATCGACGGTCTTCCAGATCCGGGCGGTCCTTCGTTTAAGGAAAATAAGCGCGAATCTAACTTCAAATCACGAGAAGAGACAGAGGAGAAACGAGGTCAGTTTTCTCTTGTAGTTGGAGGTTTGCTGGTGATAGCCTTTGTTGTTCCTATGGCTCAGTATTATGCTTATGTATCCAAGAAGTAAAACAATCCTCTGTTTCCTTCACATTCGTATGTATAACCATAATGTTCTACAAATAGGATCGCTACAACATCATTTGCAACAAACCTGTTATAAACCAAGAGTTCAGCTTTT

mRNA sequence

TCTGAATCTCTCCATCTTCCCATGGAAACCATTCTCTCTCCACACACACTCTCTCCTCTCCTCAACCCCAAACCCTCCTCTCCCAAGAATCTCTTCCCTTATTCCTTCCAACCCAGAAGACATTTTGTTTCTTTCTCTAACCCCATTTCGTTCTCTCTCAAAAACCCCTCTCCCAAGTCTCTCCGATCATCGCTCCCAGTTCCCTCGAATTGGTTCTCCCATCTCCAACATGGGTTGGCGGCGCTAGCAATTTCTTTAGCGCTCAACTTTTCCCCATTGTTGGCCACCCACAATGCTCTGGCGTCTGAATTTGATGTGCTCAATGATGGGCCGCCGAAGGAGTCGCATCTAGTGGACGATGCTGGAGTTCTCAGTAGAGTCACGAAGTCGGATTTGAAGAGGCTGTTGACGGATTTGGAGTCGAGGAAGAATTTTCACATTGATTTTGTCACTGTTAGAAAGCTTACTCGTTGGTATCCCACTGTGGAAGATGGCAACAACAAAGGTATAGTTGTTCTTGTCACCAGTCAGAAAGAAGGAGCCATTACTGGTGGGCCTGCCTTTATCCAAGCAGTTGGAGAAAACATACTTGATGCTACAGTAACAGAGAACCTCCCAGTCTTAGCTACTGATGAAAAATACAATGAAGCCATATATAGCAGCGCGAAGCGGTTAGTTGCTGCCATCGACGGTCTTCCAGATCCGGGCGGTCCTTCGTTTAAGGAAAATAAGCGCGAATCTAACTTCAAATCACGAGAAGAGACAGAGGAGAAACGAGGTCAGTTTTCTCTTGTAGTTGGAGGTTTGCTGGTGATAGCCTTTGTTGTTCCTATGGCTCAGTATTATGCTTATGTATCCAAGAAGTAAAACAATCCTCTGTTTCCTTCACATTCGTATGTATAACCATAATGTTCTACAAATAGGATCGCTACAACATCATTTGCAACAAACCTGTTATAAACCAAGAGTTCAGCTTTT

Coding sequence (CDS)

ATGGAAACCATTCTCTCTCCACACACACTCTCTCCTCTCCTCAACCCCAAACCCTCCTCTCCCAAGAATCTCTTCCCTTATTCCTTCCAACCCAGAAGACATTTTGTTTCTTTCTCTAACCCCATTTCGTTCTCTCTCAAAAACCCCTCTCCCAAGTCTCTCCGATCATCGCTCCCAGTTCCCTCGAATTGGTTCTCCCATCTCCAACATGGGTTGGCGGCGCTAGCAATTTCTTTAGCGCTCAACTTTTCCCCATTGTTGGCCACCCACAATGCTCTGGCGTCTGAATTTGATGTGCTCAATGATGGGCCGCCGAAGGAGTCGCATCTAGTGGACGATGCTGGAGTTCTCAGTAGAGTCACGAAGTCGGATTTGAAGAGGCTGTTGACGGATTTGGAGTCGAGGAAGAATTTTCACATTGATTTTGTCACTGTTAGAAAGCTTACTCGTTGGTATCCCACTGTGGAAGATGGCAACAACAAAGGTATAGTTGTTCTTGTCACCAGTCAGAAAGAAGGAGCCATTACTGGTGGGCCTGCCTTTATCCAAGCAGTTGGAGAAAACATACTTGATGCTACAGTAACAGAGAACCTCCCAGTCTTAGCTACTGATGAAAAATACAATGAAGCCATATATAGCAGCGCGAAGCGGTTAGTTGCTGCCATCGACGGTCTTCCAGATCCGGGCGGTCCTTCGTTTAAGGAAAATAAGCGCGAATCTAACTTCAAATCACGAGAAGAGACAGAGGAGAAACGAGGTCAGTTTTCTCTTGTAGTTGGAGGTTTGCTGGTGATAGCCTTTGTTGTTCCTATGGCTCAGTATTATGCTTATGTATCCAAGAAGTAA

Protein sequence

METILSPHTLSPLLNPKPSSPKNLFPYSFQPRRHFVSFSNPISFSLKNPSPKSLRSSLPVPSNWFSHLQHGLAALAISLALNFSPLLATHNALASEFDVLNDGPPKESHLVDDAGVLSRVTKSDLKRLLTDLESRKNFHIDFVTVRKLTRWYPTVEDGNNKGIVVLVTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAIDGLPDPGGPSFKENKRESNFKSREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK

Homology

[Close]

BLAST of Carg12882 vs. NCBI nr
Match: XP_022946287.1 (UPF0603 protein At1g54780, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 541.2 bits (1393), Expect = 2.1e-150
Identity = 281/295 (95.25%), Postives = 281/295 (95.25%), Query Frame = 0


Query: 1   METILSPHTLSPLLNPKPSSPKNLFPYSFQPRRHFVSFSNPISFSLKNPSPKSLRSSLPV 60
           METILSPHTLSPLLNPKPSSPKNLFPYSFQPRRHFVSFSNPISFSLKNPSPKSLRSSLPV
Sbjct: 1   METILSPHTLSPLLNPKPSSPKNLFPYSFQPRRHFVSFSNPISFSLKNPSPKSLRSSLPV 60

Query: 61  PSNWFSHLQHGLAALAISLALNFSPLLATHNALASEFDVLNDGPPKESHLVDDAGVLSRV 120
           PSNWFSHLQHGLAALAISLALNFSPLLATHNALASEFDVLNDGPPKESHLVDDAGVLSRV
Sbjct: 61  PSNWFSHLQHGLAALAISLALNFSPLLATHNALASEFDVLNDGPPKESHLVDDAGVLSRV 120

Query: 121 TKSDLKRLLTDLESRKNFHIDFVTVRKLT--------------RWYPTVEDGNNKGIVVL 180
           TKSDLKRLLTDLESRKNFHIDFVTVRKLT              RWYPTVEDGNNKGIVVL
Sbjct: 121 TKSDLKRLLTDLESRKNFHIDFVTVRKLTSKADAFEYADQVLERWYPTVEDGNNKGIVVL 180

Query: 181 VTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAIDGLP 240
           VTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAIDGLP
Sbjct: 181 VTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAIDGLP 240

Query: 241 DPGGPSFKENKRESNFKSREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK 282
           DPGGPSFKENKRESNFKSREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK
Sbjct: 241 DPGGPSFKENKRESNFKSREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK 295

[Close]

BLAST of Carg12882 vs. NCBI nr
Match: XP_023547269.1 (UPF0603 protein At1g54780, chloroplastic-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 531.9 bits (1369), Expect = 1.3e-147
Identity = 280/299 (93.65%), Postives = 280/299 (93.65%), Query Frame = 0


Query: 1   METILSPHTLSPLLNPKPSSPKNLFPYSFQPRRHFVSFSNPISFSLKNPSPK----SLRS 60
           METILSPHTLSPLLNPKPSSPKNLFPYSFQPRRHFVSFSNPISFSLKN SPK    SLRS
Sbjct: 1   METILSPHTLSPLLNPKPSSPKNLFPYSFQPRRHFVSFSNPISFSLKNHSPKSLRSSLRS 60

Query: 61  SLPVPSNWFSHLQHGLAALAISLALNFSPLLATHNALASEFDVLNDGPPKESHLVDDAGV 120
           SLPVPSNWFSHLQHGLAALAISLALNFSPLLATHNALASEFDVLNDGPPKESHLVDDAGV
Sbjct: 61  SLPVPSNWFSHLQHGLAALAISLALNFSPLLATHNALASEFDVLNDGPPKESHLVDDAGV 120

Query: 121 LSRVTKSDLKRLLTDLESRKNFHIDFVTVRKLT--------------RWYPTVEDGNNKG 180
           LSRVTKSDLKRLLTDLESRKNFHIDFVTVRKLT              RWYPTVEDGNNKG
Sbjct: 121 LSRVTKSDLKRLLTDLESRKNFHIDFVTVRKLTSKADAFEYADQVLERWYPTVEDGNNKG 180

Query: 181 IVVLVTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAI 240
           IVVLVTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAI
Sbjct: 181 IVVLVTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAI 240

Query: 241 DGLPDPGGPSFKENKRESNFKSREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK 282
           DGLPDPGGPSFKENKRESNFKSREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK
Sbjct: 241 DGLPDPGGPSFKENKRESNFKSREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK 299

[Close]

BLAST of Carg12882 vs. NCBI nr
Match: XP_022999120.1 (UPF0603 protein At1g54780, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 530.8 bits (1366), Expect = 2.8e-147
Identity = 279/299 (93.31%), Postives = 279/299 (93.31%), Query Frame = 0


Query: 1   METILSPHTLSPLLNPKPSSPKNLFPYSFQPRRHFVSFSNPISFSLKNPSPK----SLRS 60
           METILSPHTLSPLLNPKPSSPKNLFPYSFQPRRHFVSFSNPISFSLK PSPK    SLRS
Sbjct: 49  METILSPHTLSPLLNPKPSSPKNLFPYSFQPRRHFVSFSNPISFSLKTPSPKSLRSSLRS 108

Query: 61  SLPVPSNWFSHLQHGLAALAISLALNFSPLLATHNALASEFDVLNDGPPKESHLVDDAGV 120
           SLPVPSNWFSHLQHGLAALAISLALNFSPLLATHNALASEFDVLNDGPPKESHLVDDAGV
Sbjct: 109 SLPVPSNWFSHLQHGLAALAISLALNFSPLLATHNALASEFDVLNDGPPKESHLVDDAGV 168

Query: 121 LSRVTKSDLKRLLTDLESRKNFHIDFVTVRKLT--------------RWYPTVEDGNNKG 180
           LSRVTKSDLKRLLTDLE RKNFHIDFVTVRKLT              RWYPTVEDGNNKG
Sbjct: 169 LSRVTKSDLKRLLTDLELRKNFHIDFVTVRKLTSKADAFEYADQVLERWYPTVEDGNNKG 228

Query: 181 IVVLVTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAI 240
           IVVLVTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAI
Sbjct: 229 IVVLVTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAI 288

Query: 241 DGLPDPGGPSFKENKRESNFKSREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK 282
           DGLPDPGGPSFKENKRESNFKSREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK
Sbjct: 289 DGLPDPGGPSFKENKRESNFKSREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK 347

[Close]

BLAST of Carg12882 vs. NCBI nr
Match: XP_023547268.1 (UPF0603 protein At1g54780, chloroplastic-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 528.9 bits (1361), Expect = 1.1e-146
Identity = 279/299 (93.31%), Postives = 279/299 (93.31%), Query Frame = 0


Query: 1   METILSPHTLSPLLNPKPSSPKNLFPYSFQPRRHFVSFSNPISFSLKNPSPK----SLRS 60
           METILS HTLSPLLNPKPSSPKNLFPYSFQPRRHFVSFSNPISFSLKN SPK    SLRS
Sbjct: 1   METILSSHTLSPLLNPKPSSPKNLFPYSFQPRRHFVSFSNPISFSLKNHSPKSLRSSLRS 60

Query: 61  SLPVPSNWFSHLQHGLAALAISLALNFSPLLATHNALASEFDVLNDGPPKESHLVDDAGV 120
           SLPVPSNWFSHLQHGLAALAISLALNFSPLLATHNALASEFDVLNDGPPKESHLVDDAGV
Sbjct: 61  SLPVPSNWFSHLQHGLAALAISLALNFSPLLATHNALASEFDVLNDGPPKESHLVDDAGV 120

Query: 121 LSRVTKSDLKRLLTDLESRKNFHIDFVTVRKLT--------------RWYPTVEDGNNKG 180
           LSRVTKSDLKRLLTDLESRKNFHIDFVTVRKLT              RWYPTVEDGNNKG
Sbjct: 121 LSRVTKSDLKRLLTDLESRKNFHIDFVTVRKLTSKADAFEYADQVLERWYPTVEDGNNKG 180

Query: 181 IVVLVTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAI 240
           IVVLVTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAI
Sbjct: 181 IVVLVTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAI 240

Query: 241 DGLPDPGGPSFKENKRESNFKSREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK 282
           DGLPDPGGPSFKENKRESNFKSREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK
Sbjct: 241 DGLPDPGGPSFKENKRESNFKSREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK 299

[Close]

BLAST of Carg12882 vs. NCBI nr
Match: XP_008455096.1 (PREDICTED: UPF0603 protein At1g54780, chloroplastic [Cucumis melo])

HSP 1 Score: 493.4 bits (1269), Expect = 5.0e-136
Identity = 261/296 (88.18%), Postives = 269/296 (90.88%), Query Frame = 0


Query: 1   METILSPHTLSPLLNPKPSSPKNLFPYSFQPRRHFVSFSNPISFSLKNPS-PKSLRSSLP 60
           METILSPH+LSPLLNPKPSS KNL  YS QPR + VS S PIS SLK PS PKSLRSSLP
Sbjct: 1   METILSPHSLSPLLNPKPSSSKNLSLYSTQPRSNLVSLSKPISLSLKTPSPPKSLRSSLP 60

Query: 61  VPSNWFSHLQHGLAALAISLALNFSPLLATHNALASEFDVLNDGPPKESHLVDDAGVLSR 120
           VPS WFSHLQHGLAA+AISLALNFSPLLA HNALASEFDVLNDGPPKE+H+VDDAGVLSR
Sbjct: 61  VPSTWFSHLQHGLAAVAISLALNFSPLLAGHNALASEFDVLNDGPPKETHVVDDAGVLSR 120

Query: 121 VTKSDLKRLLTDLESRKNFHIDFVTVRKLT--------------RWYPTVEDGNNKGIVV 180
           VTKSDLKRLLTDLE+RKNFHIDFVTVRKLT              RWYPTVEDGNNKGIVV
Sbjct: 121 VTKSDLKRLLTDLETRKNFHIDFVTVRKLTSKADAFEYADQVLERWYPTVEDGNNKGIVV 180

Query: 181 LVTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAIDGL 240
           LVTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAIDGL
Sbjct: 181 LVTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAIDGL 240

Query: 241 PDPGGPSFKENKRESNFKSREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK 282
           PDPGGPSFK+NKRESNFK+REETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK
Sbjct: 241 PDPGGPSFKDNKRESNFKTREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK 296

[Close]

BLAST of Carg12882 vs. TAIR10
Match: AT1G54780.1 (thylakoid lumen 18.3 kDa protein)

HSP 1 Score: 357.8 bits (917), Expect = 6.0e-99
Identity = 194/295 (65.76%), Postives = 228/295 (77.29%), Query Frame = 0


Query: 1   METILSPHTLSPLLNPKPSSPKNLFPYSFQPRRHFVSFSNPISFSLKNPSPKSLRSSLPV 60
           MET+LSP  LSP LNPKP     L  +  +P  H +S S    FS           + P 
Sbjct: 1   METLLSPRALSPPLNPKP-----LSLHQTKPTSHSLSLSXXXXFS--GXXXXXXXXTKPE 60

Query: 61  PSNWFSHLQHGLAALAISLALNFSPLLATHNALASEFDVLNDGPPKESHLVDDAGVLSRV 120
             NW    + GLAALA+SL L FSP+     ALASEF++LNDGPPKE+++VDDAGVLSRV
Sbjct: 61  SRNWLIDAKQGLAALALSLTLTFSPV---GTALASEFNILNDGPPKETYVVDDAGVLSRV 120

Query: 121 TKSDLKRLLTDLESRKNFHIDFVTVRKLT--------------RWYPTVEDGNNKGIVVL 180
           TKSDLK+LL+DLE RK   ++F+TVRKLT              +WYP++E+GNNKGIVVL
Sbjct: 121 TKSDLKKLLSDLEYRKKLRLNFITVRKLTSKADAFEYADQVLEKWYPSIEEGNNKGIVVL 180

Query: 181 VTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAIDGLP 240
           +TSQKEGAITGGPAFI+AVGENILDATV+ENLPVLATDEKYNEA+YSSAKRLVAAIDG P
Sbjct: 181 ITSQKEGAITGGPAFIEAVGENILDATVSENLPVLATDEKYNEAVYSSAKRLVAAIDGQP 240

Query: 241 DPGGPSFKENKRESNFKSREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK 282
           DPGGP+ K++KRESNFK++EET+EKRGQFSLVVGGLLVIAFVVPMAQY+AYVS+K
Sbjct: 241 DPGGPTVKDSKRESNFKTKEETDEKRGQFSLVVGGLLVIAFVVPMAQYFAYVSRK 285

[Close]

BLAST of Carg12882 vs. Swiss-Prot
Match: sp|Q9ZVL6|U603_ARATH (UPF0603 protein At1g54780, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g54780 PE=1 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 1.1e-97
Identity = 194/295 (65.76%), Postives = 228/295 (77.29%), Query Frame = 0


Query: 1   METILSPHTLSPLLNPKPSSPKNLFPYSFQPRRHFVSFSNPISFSLKNPSPKSLRSSLPV 60
           MET+LSP  LSP LNPKP     L  +  +P  H +S S    FS           + P 
Sbjct: 1   METLLSPRALSPPLNPKP-----LSLHQTKPTSHSLSLSXXXXFS--GXXXXXXXXTKPE 60

Query: 61  PSNWFSHLQHGLAALAISLALNFSPLLATHNALASEFDVLNDGPPKESHLVDDAGVLSRV 120
             NW    + GLAALA+SL L FSP+     ALASEF++LNDGPPKE+++VDDAGVLSRV
Sbjct: 61  SRNWLIDAKQGLAALALSLTLTFSPV---GTALASEFNILNDGPPKETYVVDDAGVLSRV 120

Query: 121 TKSDLKRLLTDLESRKNFHIDFVTVRKLT--------------RWYPTVEDGNNKGIVVL 180
           TKSDLK+LL+DLE RK   ++F+TVRKLT              +WYP++E+GNNKGIVVL
Sbjct: 121 TKSDLKKLLSDLEYRKKLRLNFITVRKLTSKADAFEYADQVLEKWYPSIEEGNNKGIVVL 180

Query: 181 VTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAIDGLP 240
           +TSQKEGAITGGPAFI+AVGENILDATV+ENLPVLATDEKYNEA+YSSAKRLVAAIDG P
Sbjct: 181 ITSQKEGAITGGPAFIEAVGENILDATVSENLPVLATDEKYNEAVYSSAKRLVAAIDGQP 240

Query: 241 DPGGPSFKENKRESNFKSREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK 282
           DPGGP+ K++KRESNFK++EET+EKRGQFSLVVGGLLVIAFVVPMAQY+AYVS+K
Sbjct: 241 DPGGPTVKDSKRESNFKTKEETDEKRGQFSLVVGGLLVIAFVVPMAQYFAYVSRK 285

[Close]

BLAST of Carg12882 vs. Swiss-Prot
Match: sp|A2Y4G9|U603_ORYSI (UPF0603 protein OsI_019212, chloroplastic OS=Oryza sativa subsp. indica OX=39946 GN=OsI_19898 PE=3 SV=2)

HSP 1 Score: 319.3 bits (817), Expect = 4.2e-86
Identity = 165/233 (70.82%), Postives = 190/233 (81.55%), Query Frame = 0


Query: 63  NWFSHLQHGLAALAISLALNFSPLLATHNALASEFDVLNDGPPKESHLVDDAGVLSRVTK 122
           +W + LQHGLA                     SEFDVLN GPP+++++VDDAGVLSRVTK
Sbjct: 69  SWATFLQHGLA--XXXXXXXXXXXXXXXXXXXSEFDVLNGGPPEDTYVVDDAGVLSRVTK 128

Query: 123 SDLKRLLTDLESRKNFHIDFVTVRKLT--------------RWYPTVEDGNNKGIVVLVT 182
           SD+KRL+ DLESRKN  I+F+TVRKLT              +WYPTVE+GNNKGIVVLVT
Sbjct: 129 SDVKRLVRDLESRKNIRINFITVRKLTSKADAFEYADQVLEKWYPTVEEGNNKGIVVLVT 188

Query: 183 SQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAIDGLPDP 242
           SQKEGAITGGPAF+QAVG+ ILD+TV+ENLPVLATDEKYNEAIY++AKRL AAIDGLPDP
Sbjct: 189 SQKEGAITGGPAFVQAVGDEILDSTVSENLPVLATDEKYNEAIYTTAKRLAAAIDGLPDP 248

Query: 243 GGPSFKENKRESNFKSREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK 282
           GGP+FK+NKRESNFK++EETEEKRGQF+LVVGGLLVIAFVVPMAQYYAY+SKK
Sbjct: 249 GGPTFKDNKRESNFKTKEETEEKRGQFTLVVGGLLVIAFVVPMAQYYAYISKK 299

[Close]

BLAST of Carg12882 vs. Swiss-Prot
Match: sp|Q6ATY4|U603_ORYSJ (UPF0603 protein Os05g0401100, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0401100 PE=3 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 4.2e-86
Identity = 165/233 (70.82%), Postives = 190/233 (81.55%), Query Frame = 0


Query: 63  NWFSHLQHGLAALAISLALNFSPLLATHNALASEFDVLNDGPPKESHLVDDAGVLSRVTK 122
           +W + LQHGLA                     SEFDVLN GPP+++++VDDAGVLSRVTK
Sbjct: 69  SWATFLQHGLA--XXXXXXXXXXXXXXXXXXXSEFDVLNGGPPEDTYVVDDAGVLSRVTK 128

Query: 123 SDLKRLLTDLESRKNFHIDFVTVRKLT--------------RWYPTVEDGNNKGIVVLVT 182
           SD+KRL+ DLESRKN  I+F+TVRKLT              +WYPTVE+GNNKGIVVLVT
Sbjct: 129 SDVKRLVRDLESRKNIRINFITVRKLTSKADAFEYADQVLEKWYPTVEEGNNKGIVVLVT 188

Query: 183 SQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAIDGLPDP 242
           SQKEGAITGGPAF+QAVG+ ILD+TV+ENLPVLATDEKYNEAIY++AKRL AAIDGLPDP
Sbjct: 189 SQKEGAITGGPAFVQAVGDEILDSTVSENLPVLATDEKYNEAIYTTAKRLAAAIDGLPDP 248

Query: 243 GGPSFKENKRESNFKSREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK 282
           GGP+FK+NKRESNFK++EETEEKRGQF+LVVGGLLVIAFVVPMAQYYAY+SKK
Sbjct: 249 GGPTFKDNKRESNFKTKEETEEKRGQFTLVVGGLLVIAFVVPMAQYYAYISKK 299

[Close]

BLAST of Carg12882 vs. TrEMBL
Match: tr|A0A1S3C0U8|A0A1S3C0U8_CUCME (UPF0603 protein At1g54780, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495349 PE=4 SV=1)

HSP 1 Score: 493.4 bits (1269), Expect = 3.3e-136
Identity = 261/296 (88.18%), Postives = 269/296 (90.88%), Query Frame = 0


Query: 1   METILSPHTLSPLLNPKPSSPKNLFPYSFQPRRHFVSFSNPISFSLKNPS-PKSLRSSLP 60
           METILSPH+LSPLLNPKPSS KNL  YS QPR + VS S PIS SLK PS PKSLRSSLP
Sbjct: 1   METILSPHSLSPLLNPKPSSSKNLSLYSTQPRSNLVSLSKPISLSLKTPSPPKSLRSSLP 60

Query: 61  VPSNWFSHLQHGLAALAISLALNFSPLLATHNALASEFDVLNDGPPKESHLVDDAGVLSR 120
           VPS WFSHLQHGLAA+AISLALNFSPLLA HNALASEFDVLNDGPPKE+H+VDDAGVLSR
Sbjct: 61  VPSTWFSHLQHGLAAVAISLALNFSPLLAGHNALASEFDVLNDGPPKETHVVDDAGVLSR 120

Query: 121 VTKSDLKRLLTDLESRKNFHIDFVTVRKLT--------------RWYPTVEDGNNKGIVV 180
           VTKSDLKRLLTDLE+RKNFHIDFVTVRKLT              RWYPTVEDGNNKGIVV
Sbjct: 121 VTKSDLKRLLTDLETRKNFHIDFVTVRKLTSKADAFEYADQVLERWYPTVEDGNNKGIVV 180

Query: 181 LVTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAIDGL 240
           LVTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAIDGL
Sbjct: 181 LVTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAIDGL 240

Query: 241 PDPGGPSFKENKRESNFKSREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK 282
           PDPGGPSFK+NKRESNFK+REETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK
Sbjct: 241 PDPGGPSFKDNKRESNFKTREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK 296

[Close]

BLAST of Carg12882 vs. TrEMBL
Match: tr|A0A0A0LGA5|A0A0A0LGA5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G020910 PE=4 SV=1)

HSP 1 Score: 473.0 bits (1216), Expect = 4.6e-130
Identity = 252/297 (84.85%), Postives = 264/297 (88.89%), Query Frame = 0


Query: 1   METILSPHTLSPLLNPKPSSPKNLFPY-SFQPRRHFVSFSNPISFSLKNPS-PKSLRSSL 60
           METILSP++LSP+LNPKPSS KN   Y S QPR +  S S PIS SLK PS PKSLRSSL
Sbjct: 1   METILSPYSLSPILNPKPSSSKNPSLYHSTQPRSNLASLSKPISLSLKTPSPPKSLRSSL 60

Query: 61  PVPSNWFSHLQHGLAALAISLALNFSPLLATHNALASEFDVLNDGPPKESHLVDDAGVLS 120
           P PS WFSHLQHGLAA+AISLALNFSPLLA HNALASEFDVL+DGPPKE+HLVDDAGVLS
Sbjct: 61  PFPSTWFSHLQHGLAAVAISLALNFSPLLAGHNALASEFDVLSDGPPKETHLVDDAGVLS 120

Query: 121 RVTKSDLKRLLTDLESRKNFHIDFVTVRKLT--------------RWYPTVEDGNNKGIV 180
           RVTKSDLKRLLTDLE RKNFHIDFVTVRKLT              RWYPTVEDGNNKGIV
Sbjct: 121 RVTKSDLKRLLTDLEMRKNFHIDFVTVRKLTSKADAFEYADQVLERWYPTVEDGNNKGIV 180

Query: 181 VLVTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAIDG 240
           VLVTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAIDG
Sbjct: 181 VLVTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAIDG 240

Query: 241 LPDPGGPSFKENKRESNFKSREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK 282
           LPD GGPSFK+NKRESNFK+REETEEKRGQF+LVVGGLLVIAF+VPMAQYYAY+SKK
Sbjct: 241 LPDTGGPSFKDNKRESNFKTREETEEKRGQFTLVVGGLLVIAFIVPMAQYYAYISKK 297

[Close]

BLAST of Carg12882 vs. TrEMBL
Match: tr|A0A2N9J993|A0A2N9J993_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS29479 PE=4 SV=1)

HSP 1 Score: 443.4 bits (1139), Expect = 3.9e-121
Identity = 227/295 (76.95%), Postives = 257/295 (87.12%), Query Frame = 0


Query: 1   METILSPHTLSPLLNPKPSSPKNLFPYSFQPRRHFVSFSNPISFSLKNPSPKSLRSSLPV 60
           METILSPH+LSPL NPKPSSPK L   S QPR + +S + PI+ SLK   P+SL+ SLP+
Sbjct: 1   METILSPHSLSPLFNPKPSSPKTLLSSSLQPRSNSLSLTKPITSSLKKHKPQSLKPSLPI 60

Query: 61  PSNWFSHLQHGLAALAISLALNFSPLLATHNALASEFDVLNDGPPKESHLVDDAGVLSRV 120
           P+NWFS+ Q GL ALA++LALNFSPLL + NALASEFDVLN GPPKES++VDDAGVLSRV
Sbjct: 61  PTNWFSYAQQGLTALALTLALNFSPLLPSGNALASEFDVLNQGPPKESYVVDDAGVLSRV 120

Query: 121 TKSDLKRLLTDLESRKNFHIDFVTVRKLT--------------RWYPTVEDGNNKGIVVL 180
           T+SDLK LL+DLESRKNFHI+FVTVRKLT              RWYP+VEDGN+KGIVVL
Sbjct: 121 TRSDLKSLLSDLESRKNFHINFVTVRKLTSKADAFEYADQVLERWYPSVEDGNDKGIVVL 180

Query: 181 VTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAIDGLP 240
           VTSQKEGA+TGGPAF+QAVGE+ILDATV+ENLPVLAT+EKYNEA+YSSAKRLVAAIDGLP
Sbjct: 181 VTSQKEGAVTGGPAFVQAVGESILDATVSENLPVLATEEKYNEAVYSSAKRLVAAIDGLP 240

Query: 241 DPGGPSFKENKRESNFKSREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK 282
           DPGGP F ENKRESNFK++EETEEKRGQF+LVVGGLLVIAFVVPMAQYYAYVS+K
Sbjct: 241 DPGGPKFNENKRESNFKTKEETEEKRGQFALVVGGLLVIAFVVPMAQYYAYVSRK 295

[Close]

BLAST of Carg12882 vs. TrEMBL
Match: tr|A0A2C9VBC0|A0A2C9VBC0_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_09G163500 PE=4 SV=1)

HSP 1 Score: 434.9 bits (1117), Expect = 1.4e-118
Identity = 220/295 (74.58%), Postives = 255/295 (86.44%), Query Frame = 0


Query: 1   METILSPHTLSPLLNPKPSSPKNLFPYSFQPRRHFVSFSNPISFSLKNPSPKSLRSSLPV 60
           MET+LS H+LSPL NPKPSSPK  FP   QPR H +S + PI+ SLKN +P+SL+  LP+
Sbjct: 1   METLLSSHSLSPLFNPKPSSPKTHFPLPLQPRPHSLSLTKPITCSLKNQTPQSLKPFLPI 60

Query: 61  PSNWFSHLQHGLAALAISLALNFSPLLATHNALASEFDVLNDGPPKESHLVDDAGVLSRV 120
           P++W SH Q GLAALA+SLALNFSP+L T NALASEFDV+N+GPPK+S++VDDAGVLSRV
Sbjct: 61  PTSWVSHAQQGLAALALSLALNFSPILYTGNALASEFDVINEGPPKDSYVVDDAGVLSRV 120

Query: 121 TKSDLKRLLTDLESRKNFHIDFVTVRKLT--------------RWYPTVEDGNNKGIVVL 180
           TK+DLK+LL+DLESRKN  I+F+TVRKLT              +WYPTVE+GNNKGIVVL
Sbjct: 121 TKTDLKQLLSDLESRKNVKINFITVRKLTSKADAFEFADQILEKWYPTVEEGNNKGIVVL 180

Query: 181 VTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAIDGLP 240
           VTSQKEGA+TGGP F+QAVGE +LD+TV+ENLPVLAT+EKYNEA+ SSAKRLVAAIDGLP
Sbjct: 181 VTSQKEGAVTGGPGFVQAVGETVLDSTVSENLPVLATEEKYNEAVVSSAKRLVAAIDGLP 240

Query: 241 DPGGPSFKENKRESNFKSREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK 282
           DPGGP FK+NKRESNFK+REETEEKRGQF+LVVGGLLVIAFVVPMAQYYAYVSKK
Sbjct: 241 DPGGPKFKDNKRESNFKTREETEEKRGQFALVVGGLLVIAFVVPMAQYYAYVSKK 295

[Close]

BLAST of Carg12882 vs. TrEMBL
Match: tr|A0A2P4HCJ9|A0A2P4HCJ9_QUESU (Upf0603 protein, chloroplastic OS=Quercus suber OX=58331 GN=CFP56_66735 PE=4 SV=1)

HSP 1 Score: 433.3 bits (1113), Expect = 4.1e-118
Identity = 224/295 (75.93%), Postives = 260/295 (88.14%), Query Frame = 0


Query: 1   METILSPHTLSPLLNPKPSSPKNLFPYSFQPRRHFVSFSNPISFSLKNPSPKSLRSSLPV 60
           METILSP +LSPL NPKPSSPK L   S QP+ + +S + PI+ SLK    + L+ SLP+
Sbjct: 1   METILSPRSLSPLFNPKPSSPKTLVS-SLQPKSNSLSLTKPITSSLKKHQLQFLKPSLPI 60

Query: 61  PSNWFSHLQHGLAALAISLALNFSPLLATHNALASEFDVLNDGPPKESHLVDDAGVLSRV 120
           P++WFS+ Q GLAALA++LALNFSPLL++ NALASEFDV+N+GPPKE+++VDDAGVLSRV
Sbjct: 61  PTSWFSYAQQGLAALALTLALNFSPLLSSGNALASEFDVINEGPPKETYVVDDAGVLSRV 120

Query: 121 TKSDLKRLLTDLESRKNFHIDFVTVRKLT--------------RWYPTVEDGNNKGIVVL 180
           T+SDLKRLL+DLESRKNFHI+FVTVRKLT              RWYP+VE+GN+KGIVVL
Sbjct: 121 TRSDLKRLLSDLESRKNFHINFVTVRKLTSKADAFEYADQVLERWYPSVEEGNDKGIVVL 180

Query: 181 VTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAIDGLP 240
           VTSQKEGAITGGPAF+QAVGENILDATV+ENLPVLAT+EKYNEA+YSSAKRLVAAIDGLP
Sbjct: 181 VTSQKEGAITGGPAFVQAVGENILDATVSENLPVLATEEKYNEAVYSSAKRLVAAIDGLP 240

Query: 241 DPGGPSFKENKRESNFKSREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK 282
           DPGGP+FK+NKRESNFK++EETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVS+K
Sbjct: 241 DPGGPTFKDNKRESNFKTKEETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSRK 294

The following BLAST results are available for this feature:

BLAST of Carg12882 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022946287.1	2.1e-150	95.25	UPF0603 protein At1g54780, chloroplastic-like [Cucurbita moschata]	[more]
XP_023547269.1	1.3e-147	93.65	UPF0603 protein At1g54780, chloroplastic-like isoform X2 [Cucurbita pepo subsp. ...	[more]
XP_022999120.1	2.8e-147	93.31	UPF0603 protein At1g54780, chloroplastic-like [Cucurbita maxima]	[more]
XP_023547268.1	1.1e-146	93.31	UPF0603 protein At1g54780, chloroplastic-like isoform X1 [Cucurbita pepo subsp. ...	[more]
XP_008455096.1	5.0e-136	88.18	PREDICTED: UPF0603 protein At1g54780, chloroplastic [Cucumis melo]	[more]

BLAST of Carg12882 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G54780.1	6.0e-99	65.76	thylakoid lumen 18.3 kDa protein	[more]

BLAST of Carg12882 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9ZVL6\|U603_ARATH	1.1e-97	65.76	UPF0603 protein At1g54780, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g...	[more]
sp\|A2Y4G9\|U603_ORYSI	4.2e-86	70.82	UPF0603 protein OsI_019212, chloroplastic OS=Oryza sativa subsp. indica OX=39946...	[more]
sp\|Q6ATY4\|U603_ORYSJ	4.2e-86	70.82	UPF0603 protein Os05g0401100, chloroplastic OS=Oryza sativa subsp. japonica OX=3...	[more]

BLAST of Carg12882 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C0U8\|A0A1S3C0U8_CUCME	3.3e-136	88.18	UPF0603 protein At1g54780, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495349...	[more]
tr\|A0A0A0LGA5\|A0A0A0LGA5_CUCSA	4.6e-130	84.85	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G020910 PE=4 SV=1	[more]
tr\|A0A2N9J993\|A0A2N9J993_FAGSY	3.9e-121	76.95	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS29479 PE=4 SV=1	[more]
tr\|A0A2C9VBC0\|A0A2C9VBC0_MANES	1.4e-118	74.58	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_09G163500 PE=4 SV=...	[more]
tr\|A0A2P4HCJ9\|A0A2P4HCJ9_QUESU	4.1e-118	75.93	Upf0603 protein, chloroplastic OS=Quercus suber OX=58331 GN=CFP56_66735 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007621	TPM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg12882-RA	Carg12882-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.10.310.50		coord: 93..231 e-value: 1.0E-15 score: 59.4
None	No IPR available	PANTHER	PTHR30373	UNCHARACTERIZED	coord: 1..281
None	No IPR available	PANTHER	PTHR30373:SF6	SUBFAMILY NOT NAMED	coord: 1..281
IPR007621	TPM domain	PFAM	PF04536	TPM_phosphatase	coord: 111..219 e-value: 3.8E-11 score: 43.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg12882	Cla019859	Watermelon (97103) v1	carwmB0907
Carg12882	MELO3C004307	Melon (DHL92) v3.5.1	carmeB0893
Carg12882	ClCG02G016070	Watermelon (Charleston Gray)	carwcgB0883
Carg12882	Cucsa.091810	Cucumber (Gy14) v1	carcgyB1020
Carg12882	CmaCh12G010900	Cucurbita maxima (Rimu)	carcmaB1241
Carg12882	CmaCh05G011610	Cucurbita maxima (Rimu)	carcmaB1246
Carg12882	CmoCh05G011720	Cucurbita moschata (Rifu)	carcmoB1216
Carg12882	CmoCh12G011070	Cucurbita moschata (Rifu)	carcmoB1212
Carg12882	Lsi11G005080	Bottle gourd (USVL1VR-Ls)	carlsiB822
Carg12882	Cp4.1LG07g09290	Cucurbita pepo (Zucchini)	carcpeB1256
Carg12882	Cp4.1LG11g09490	Cucurbita pepo (Zucchini)	carcpeB1252
Carg12882	MELO3C004307.2	Melon (DHL92) v3.6.1	carmedB0900
Carg12882	Cla97C02G041870	Watermelon (97103) v2	carwmbB0946

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg12882	Carg17563	Silver-seed gourd	carcarB587

The following block(s) are covering this gene:


Gene	Organism	Block
Carg12882	Watermelon (97103) v2	carwmbB0949