Carg17563 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg17563
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Beta-propeller domain-containing protein, methanol dehydrogenase
Location	Cucurbita_argyrosperma_scaffold_183 : 251509 .. 254898 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTTTCGTCTGAATCTCTTCAATTCCTATGGAAACCATTCTCTTTCCTCACTCTCTCTCTCCTCTCTTCAACCCTAACCCTAACCCTTCCACTTCCAAGAATCTCTTCCCCGTTTCCTCCCAATCCAGATCAAAATTTCAATGTTTCTGTAAACCTATTTCTGTTTCGCCCAAATCTCTCAAATCTTCTCTCCCAGTTCCTTCGATTTGGCTCTCCCATCTCCAACATGGCCTCGCGGCGCTGTCGATTTCTTTGGCGCTCAACTTCTCCCCGTTGTTGGCCGGTGGGATTGCCGTAGCGTCTGAGTTTGATGTGCTCAATGATGGGCCGCCGAAGGAGTCGCATCTGGTGGACGATGCTGGAGTTCTCAGTAGGGTCACGAAGTCGGATTTGAAGAGGCTGTTGACGGATTTGGAGTTGAGGAAGAATTTTCATATCGATTTCGTCACTGTTAGAAAGCTCACTGTGAGTTCTCTGCCTTTGAATTCTTGAGAGCGAAACTAAATTTGTGTTGTTCGGAGAATCTATGGGTTGAATGTTTAATGCAGATATATAGTTATAGAATAATTTGAACTTTTGTTTATCATGGGAAGAAAATGGTAATGATCTGGTGTATGTTTATGAGAATTTGATAATCTTTCTGAGACCCATTTTTAGAAAGTGGGCATCATATTGTGATGGGTTGTTTAAAATGATGGCCACAATATTGAGAAATACCTTCTCTGGTCTAAAGTCTTGGCTACTCACATATTGTCCTTTTGGATTTTTTCTTTCGGATTTTTCTAAGGAGAGGTTCCCATATCTTTATAAAGAATGAATTGTATACTCCTCAACTAATGTGAGGTCTCACAATCCACCCCCTTTGGAGCCCAGCGTCATCGTTCCCCTCTCCAATTGATGTGGGACCCCCTAATCGACCCCCCTTCGGGACCCAGCGTCCTCGTTCCCCTCTCCAATTGATGTGGGACTCCCTAATCGACCCCCCTTCGGGGCCCAGCGTCCTCGTTCCCCTCTCCAATTGATGTAAGATCCCCTAATCGACCCCCCTTCGGGGCCCAACGTCCTCGTTCCCCTCTCCAATTGATGTGGGACCCCCTAATCGACCCCCCTTCGGGGCCCAACGTCAGTGCTGGCACATCGCCTAGTGTCCACCCTCCTTTGGGGTTCAAGCCCAAGCCCAAGCCCAAGCCCAAGCCCATTGCTAGCAGATATTGTCCTCTTTGGACAGCCTCTTTTCGAGCGCTTCCCTCAAGGTTTTTAAAACGGATCTCCTAAGGGAAGGTTTCTACACCTTCATAAAGAATACTTTGTTCTTCTCCCTAACTGATGTGAGATCTCACAATCCACCCCCTTCGGGTCCACCATCCTTGCTAGCACTCGTTCACCTCTCCAATCGACGTGGGATCCCCAATCCACCCCCCTTTGGGGCCCAGCGTCCTCGTAGGCACACCACCTGATGTCCACCCCCCTTTCAGGGTTCAGCCTCCTCGCTGGCACATTGCCTGGTGTCTAGCTCTAATACCATTTGTAACAGTCCAAGTCCACCGCTAGCAGATATTGTCCTTTTTTGGTTTTCCCATTCGGGCTTCCCTTCAAGGTTTTTAAAACTAGTCTTCTAGGTAAAGGTTTCCACACCCTTATAAAAAATGACTTGTTCTACTCCCCAACCAATGTGGGATCTCACAATGGTCTTCCTCAAAGAGTAGTAAGGTGGGCCATGAGCACAAGAAACATAGGTTAAATTATAAGTTTACGCTTTGATCACTTAAGTTTGTGTCTAAAGGGTCTCGAAACGTTATGAACTGCTGATTGTAGAGCAAAGCTGATGCATTTGAGTATGCTGATCAAGTTTTGGAGCGATGGTATCCCACTGTGGAAGACGGCAACAATAAGGGCATAGTTGTGCTTGTCACCAGTCAAAAGGAAGGAGCCATTACTGGTGGCCCTGCGTTTATCCAAGCTGTTGGAGAAAACATTCTTGATGCCACAGTAACCGAGAATCTCCCAGGTAAACTAAGCTAACTACCACTTATTTCACTCTTCACTTTCCAAGCTACAATTTCTACCATTTCTTGCTTAAATTGAACACATTACAACTAGTAGATGCCTTAACTATACTCGTAGTCGTGTCTCCGTGTTTATGCGAGTTGACCTTGCATATGAGTTTCTCGACTTCAAAGGAAAAGAAAACCACAAACAAACTTGTATGTATCTTAGCACGTGTCAATATCCCAACTAGCGTTGTTGTTTCTACTAGGTCTGTGAGCTCTAAAAACGTCGAATATGTTGAGGACTCGTTAAACACAAATGAAAAGTTTCTGGATTTATTAGACATTGTTTGAAGCCTAGAAACCAAATAGACACGAATTTCATAGTTCAGGGACTTGTTAGGCACAAACTTGAGGAACTTCATCTTAATATTGTTCTCGGTTGCTTTTGCTCTAAGCTCTGATACTAAATGTAACCGTCCAAACCCACCGCTAGCAGATATTGCCCTTTTTGGGCTTTCTTTTCCGGGCTTCCCCGCAAGGTTTTAAAACATGTTTGCTAGGAAGAGGTTTCCACACCTTTCCCCTCTCCAATCGATGTGGGATCTCACAATCCACCCCGTTGGTGGTTCAACGTCCTCGCTAGCATATTGCCCGGTGTCTAGCTTTGATACCATTTGTAACAGTCCAAGTTCACCGCTAGCAGTTATTGTCCTCTTTGGGCTTTCACTTCCGGGTCTCTCCTTGAGGTTTTAAAACGTGTTTGCTGGGTCTTGAAGGGGGAGTACGAAACATTCTTTATAGGGGTGTAGAAACCTTTCTCTAGCAGACACGTTTTAAAACTGTGAGACTAACGGTGATACATAACGGGCCAAAGCGGACAATATCTAGTGTGGGCTTGAGACGTTACACTAAAACACTAAAACACCAGGATGAATGCATCAAAGAAGTGAATAATATGCTTGTAGTTGCTACTTCATTTATGAAACTGCAGGGTGAGTAAGGTTTGTTATGTAACTGCAGTATTAGCTACCGATGAAAAATACAATGAAGCCATATATAGCAGTGCGAAACGGCTAGTTGCTGCCATTGATGGCTTGCCAGATCCTGGAGGTCCTTCATTCAAGGAAAATAAGCGAGAATCTAACTTCAAATCAAGGGAAGAAACAGAGGAGAAAAGAGGTCAGTTTTCTCTTGTTGTTGGAGGTTTGTTAGTGATAGCCTTTGTTGTTCCTATGGCTCAGTATTATGCTTATGTATCCAAGAAGTGAAAGAAACATGTAAGACCCAGATCTTCCCATCTATTTCCTTCACATTCAAGTGTATAAATTTGATGCTGTATGATCGCTACAAGATGATTTGCAAGAAACCTGTTATGAAACATAGTTGAGTTTTTTTGTT

mRNA sequence

ATTTTTCGTCTGAATCTCTTCAATTCCTATGGAAACCATTCTCTTTCCTCACTCTCTCTCTCCTCTCTTCAACCCTAACCCTAACCCTTCCACTTCCAAGAATCTCTTCCCCGTTTCCTCCCAATCCAGATCAAAATTTCAATGTTTCTGTAAACCTATTTCTGTTTCGCCCAAATCTCTCAAATCTTCTCTCCCAGTTCCTTCGATTTGGCTCTCCCATCTCCAACATGGCCTCGCGGCGCTGTCGATTTCTTTGGCGCTCAACTTCTCCCCGTTGTTGGCCGGTGGGATTGCCGTAGCGTCTGAGTTTGATGTGCTCAATGATGGGCCGCCGAAGGAGTCGCATCTGGTGGACGATGCTGGAGTTCTCAGTAGGGTCACGAAGTCGGATTTGAAGAGGCTGTTGACGGATTTGGAGTTGAGGAAGAATTTTCATATCGATTTCGTCACTGTTAGAAAGCTCACTAGCAAAGCTGATGCATTTGAGTATGCTGATCAAGTTTTGGAGCGATGGTATCCCACTGTGGAAGACGGCAACAATAAGGGCATAGTTGTGCTTGTCACCAGTCAAAAGGAAGGAGCCATTACTGGTGGCCCTGCGTTTATCCAAGCTGTTGGAGAAAACATTCTTGATGCCACAGTAACCGAGAATCTCCCAGTATTAGCTACCGATGAAAAATACAATGAAGCCATATATAGCAGTGCGAAACGGCTAGTTGCTGCCATTGATGGCTTGCCAGATCCTGGAGGTCCTTCATTCAAGGAAAATAAGCGAGAATCTAACTTCAAATCAAGGGAAGAAACAGAGGAGAAAAGAGGTCAGTTTTCTCTTGTTGTTGGAGGTTTGTTAGTGATAGCCTTTGTTGTTCCTATGGCTCAGTATTATGCTTATGTATCCAAGAAGTGAAAGAAACATGTAAGACCCAGATCTTCCCATCTATTTCCTTCACATTCAAGTGTATAAATTTGATGCTGTATGATCGCTACAAGATGATTTGCAAGAAACCTGTTATGAAACATAGTTGAGTTTTTTTGTT

Coding sequence (CDS)

ATGGAAACCATTCTCTTTCCTCACTCTCTCTCTCCTCTCTTCAACCCTAACCCTAACCCTTCCACTTCCAAGAATCTCTTCCCCGTTTCCTCCCAATCCAGATCAAAATTTCAATGTTTCTGTAAACCTATTTCTGTTTCGCCCAAATCTCTCAAATCTTCTCTCCCAGTTCCTTCGATTTGGCTCTCCCATCTCCAACATGGCCTCGCGGCGCTGTCGATTTCTTTGGCGCTCAACTTCTCCCCGTTGTTGGCCGGTGGGATTGCCGTAGCGTCTGAGTTTGATGTGCTCAATGATGGGCCGCCGAAGGAGTCGCATCTGGTGGACGATGCTGGAGTTCTCAGTAGGGTCACGAAGTCGGATTTGAAGAGGCTGTTGACGGATTTGGAGTTGAGGAAGAATTTTCATATCGATTTCGTCACTGTTAGAAAGCTCACTAGCAAAGCTGATGCATTTGAGTATGCTGATCAAGTTTTGGAGCGATGGTATCCCACTGTGGAAGACGGCAACAATAAGGGCATAGTTGTGCTTGTCACCAGTCAAAAGGAAGGAGCCATTACTGGTGGCCCTGCGTTTATCCAAGCTGTTGGAGAAAACATTCTTGATGCCACAGTAACCGAGAATCTCCCAGTATTAGCTACCGATGAAAAATACAATGAAGCCATATATAGCAGTGCGAAACGGCTAGTTGCTGCCATTGATGGCTTGCCAGATCCTGGAGGTCCTTCATTCAAGGAAAATAAGCGAGAATCTAACTTCAAATCAAGGGAAGAAACAGAGGAGAAAAGAGGTCAGTTTTCTCTTGTTGTTGGAGGTTTGTTAGTGATAGCCTTTGTTGTTCCTATGGCTCAGTATTATGCTTATGTATCCAAGAAGTGA

Protein sequence

METILFPHSLSPLFNPNPNPSTSKNLFPVSSQSRSKFQCFCKPISVSPKSLKSSLPVPSIWLSHLQHGLAALSISLALNFSPLLAGGIAVASEFDVLNDGPPKESHLVDDAGVLSRVTKSDLKRLLTDLELRKNFHIDFVTVRKLTSKADAFEYADQVLERWYPTVEDGNNKGIVVLVTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAIDGLPDPGGPSFKENKRESNFKSREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK

Homology

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BLAST of Carg17563 vs. NCBI nr
Match: XP_022937634.1 (UPF0603 protein At1g54780, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 568.5 bits (1464), Expect = 1.3e-158
Identity = 292/292 (100.00%), Postives = 292/292 (100.00%), Query Frame = 0


Query: 1   METILFPHSLSPLFNPNPNPSTSKNLFPVSSQSRSKFQCFCKPISVSPKSLKSSLPVPSI 60
           METILFPHSLSPLFNPNPNPSTSKNLFPVSSQSRSKFQCFCKPISVSPKSLKSSLPVPSI
Sbjct: 1   METILFPHSLSPLFNPNPNPSTSKNLFPVSSQSRSKFQCFCKPISVSPKSLKSSLPVPSI 60

Query: 61  WLSHLQHGLAALSISLALNFSPLLAGGIAVASEFDVLNDGPPKESHLVDDAGVLSRVTKS 120
           WLSHLQHGLAALSISLALNFSPLLAGGIAVASEFDVLNDGPPKESHLVDDAGVLSRVTKS
Sbjct: 61  WLSHLQHGLAALSISLALNFSPLLAGGIAVASEFDVLNDGPPKESHLVDDAGVLSRVTKS 120

Query: 121 DLKRLLTDLELRKNFHIDFVTVRKLTSKADAFEYADQVLERWYPTVEDGNNKGIVVLVTS 180
           DLKRLLTDLELRKNFHIDFVTVRKLTSKADAFEYADQVLERWYPTVEDGNNKGIVVLVTS
Sbjct: 121 DLKRLLTDLELRKNFHIDFVTVRKLTSKADAFEYADQVLERWYPTVEDGNNKGIVVLVTS 180

Query: 181 QKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAIDGLPDPG 240
           QKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAIDGLPDPG
Sbjct: 181 QKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAIDGLPDPG 240

Query: 241 GPSFKENKRESNFKSREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK 293
           GPSFKENKRESNFKSREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK
Sbjct: 241 GPSFKENKRESNFKSREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK 292

[Close]

BLAST of Carg17563 vs. NCBI nr
Match: XP_023521578.1 (UPF0603 protein At1g54780, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023537526.1 UPF0603 protein At1g54780, chloroplastic-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023537527.1 UPF0603 protein At1g54780, chloroplastic-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 561.6 bits (1446), Expect = 1.6e-156
Identity = 288/292 (98.63%), Postives = 290/292 (99.32%), Query Frame = 0


Query: 1   METILFPHSLSPLFNPNPNPSTSKNLFPVSSQSRSKFQCFCKPISVSPKSLKSSLPVPSI 60
           METIL PHSLSPLFNPNP PSTSKNLFP+SSQSRSKFQCFCKPIS+SPKSLKSSLPVPSI
Sbjct: 1   METILSPHSLSPLFNPNPKPSTSKNLFPISSQSRSKFQCFCKPISLSPKSLKSSLPVPSI 60

Query: 61  WLSHLQHGLAALSISLALNFSPLLAGGIAVASEFDVLNDGPPKESHLVDDAGVLSRVTKS 120
           WLSHLQHGLAALSISLALNFSPLLAGGIAVASEFDVLNDGPPKESHLVDDAGVLSRVTKS
Sbjct: 61  WLSHLQHGLAALSISLALNFSPLLAGGIAVASEFDVLNDGPPKESHLVDDAGVLSRVTKS 120

Query: 121 DLKRLLTDLELRKNFHIDFVTVRKLTSKADAFEYADQVLERWYPTVEDGNNKGIVVLVTS 180
           DLKRLLTDLELRKNFHIDFVTVRKLTSKADAFEYADQVLERWYPTVEDGNNKGIVVLVTS
Sbjct: 121 DLKRLLTDLELRKNFHIDFVTVRKLTSKADAFEYADQVLERWYPTVEDGNNKGIVVLVTS 180

Query: 181 QKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAIDGLPDPG 240
           QKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAIDGLPDPG
Sbjct: 181 QKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAIDGLPDPG 240

Query: 241 GPSFKENKRESNFKSREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK 293
           GPSFKENKRESNFKSREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK
Sbjct: 241 GPSFKENKRESNFKSREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK 292

[Close]

BLAST of Carg17563 vs. NCBI nr
Match: XP_022965867.1 (UPF0603 protein At1g54780, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 557.0 bits (1434), Expect = 3.8e-155
Identity = 286/292 (97.95%), Postives = 288/292 (98.63%), Query Frame = 0


Query: 1   METILFPHSLSPLFNPNPNPSTSKNLFPVSSQSRSKFQCFCKPISVSPKSLKSSLPVPSI 60
           METIL PHSLSPL NPNP PSTSKNLFP+SSQSRSKFQCFCKPIS+SPKSLKSSLPVPSI
Sbjct: 1   METILSPHSLSPLLNPNPKPSTSKNLFPISSQSRSKFQCFCKPISLSPKSLKSSLPVPSI 60

Query: 61  WLSHLQHGLAALSISLALNFSPLLAGGIAVASEFDVLNDGPPKESHLVDDAGVLSRVTKS 120
           W SHLQHGLAALSISLALNFSPLLAGGIAVASEFDVLNDGPPKESHLVDDAGVLSRVTKS
Sbjct: 61  WQSHLQHGLAALSISLALNFSPLLAGGIAVASEFDVLNDGPPKESHLVDDAGVLSRVTKS 120

Query: 121 DLKRLLTDLELRKNFHIDFVTVRKLTSKADAFEYADQVLERWYPTVEDGNNKGIVVLVTS 180
           DLKRLLTDLELRKNFHIDFVTVRKLTSKADAFEYADQVLERWYPTVEDGNNKGIVVLVTS
Sbjct: 121 DLKRLLTDLELRKNFHIDFVTVRKLTSKADAFEYADQVLERWYPTVEDGNNKGIVVLVTS 180

Query: 181 QKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAIDGLPDPG 240
           QKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAIDGLPDPG
Sbjct: 181 QKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAIDGLPDPG 240

Query: 241 GPSFKENKRESNFKSREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK 293
           GPSFKENKRESNFKSREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK
Sbjct: 241 GPSFKENKRESNFKSREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK 292

[Close]

BLAST of Carg17563 vs. NCBI nr
Match: XP_022946287.1 (UPF0603 protein At1g54780, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 496.9 bits (1278), Expect = 4.7e-137
Identity = 265/297 (89.23%), Postives = 270/297 (90.91%), Query Frame = 0


Query: 1   METILFPHSLSPLFNPNPNPSTSKNLFPVSSQSRSKFQCFCKPISV-----SPKSLKSSL 60
           METIL PH+LSPL   NP PS+ KNLFP S Q R  F  F  PIS      SPKSL+SSL
Sbjct: 1   METILSPHTLSPLL--NPKPSSPKNLFPYSFQPRRHFVSFSNPISFSLKNPSPKSLRSSL 60

Query: 61  PVPSIWLSHLQHGLAALSISLALNFSPLLAGGIAVASEFDVLNDGPPKESHLVDDAGVLS 120
           PVPS W SHLQHGLAAL+ISLALNFSPLLA   A+ASEFDVLNDGPPKESHLVDDAGVLS
Sbjct: 61  PVPSNWFSHLQHGLAALAISLALNFSPLLATHNALASEFDVLNDGPPKESHLVDDAGVLS 120

Query: 121 RVTKSDLKRLLTDLELRKNFHIDFVTVRKLTSKADAFEYADQVLERWYPTVEDGNNKGIV 180
           RVTKSDLKRLLTDLE RKNFHIDFVTVRKLTSKADAFEYADQVLERWYPTVEDGNNKGIV
Sbjct: 121 RVTKSDLKRLLTDLESRKNFHIDFVTVRKLTSKADAFEYADQVLERWYPTVEDGNNKGIV 180

Query: 181 VLVTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAIDG 240
           VLVTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAIDG
Sbjct: 181 VLVTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAIDG 240

Query: 241 LPDPGGPSFKENKRESNFKSREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK 293
           LPDPGGPSFKENKRESNFKSREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK
Sbjct: 241 LPDPGGPSFKENKRESNFKSREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK 295

[Close]

BLAST of Carg17563 vs. NCBI nr
Match: XP_022999120.1 (UPF0603 protein At1g54780, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 493.8 bits (1270), Expect = 4.0e-136
Identity = 265/301 (88.04%), Postives = 270/301 (89.70%), Query Frame = 0


Query: 1   METILFPHSLSPLFNPNPNPSTSKNLFPVSSQSRSKFQCFCKPISVSPK---------SL 60
           METIL PH+LSPL   NP PS+ KNLFP S Q R  F  F  PIS S K         SL
Sbjct: 49  METILSPHTLSPLL--NPKPSSPKNLFPYSFQPRRHFVSFSNPISFSLKTPSPKSLRSSL 108

Query: 61  KSSLPVPSIWLSHLQHGLAALSISLALNFSPLLAGGIAVASEFDVLNDGPPKESHLVDDA 120
           +SSLPVPS W SHLQHGLAAL+ISLALNFSPLLA   A+ASEFDVLNDGPPKESHLVDDA
Sbjct: 109 RSSLPVPSNWFSHLQHGLAALAISLALNFSPLLATHNALASEFDVLNDGPPKESHLVDDA 168

Query: 121 GVLSRVTKSDLKRLLTDLELRKNFHIDFVTVRKLTSKADAFEYADQVLERWYPTVEDGNN 180
           GVLSRVTKSDLKRLLTDLELRKNFHIDFVTVRKLTSKADAFEYADQVLERWYPTVEDGNN
Sbjct: 169 GVLSRVTKSDLKRLLTDLELRKNFHIDFVTVRKLTSKADAFEYADQVLERWYPTVEDGNN 228

Query: 181 KGIVVLVTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVA 240
           KGIVVLVTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVA
Sbjct: 229 KGIVVLVTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVA 288

Query: 241 AIDGLPDPGGPSFKENKRESNFKSREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSK 293
           AIDGLPDPGGPSFKENKRESNFKSREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSK
Sbjct: 289 AIDGLPDPGGPSFKENKRESNFKSREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSK 347

[Close]

BLAST of Carg17563 vs. TAIR10
Match: AT1G54780.1 (thylakoid lumen 18.3 kDa protein)

HSP 1 Score: 379.4 bits (973), Expect = 2.0e-105
Identity = 203/292 (69.52%), Postives = 237/292 (81.16%), Query Frame = 0


Query: 1   METILFPHSLSPLFNPNPNPSTSKNLFPVSSQSRSKFQCFCKPISVSPKSLKSSLPVPSI 60
           MET+L P +LSP  NP P  S  +      S S S    F           K   P    
Sbjct: 1   METLLSPRALSPPLNPKP-LSLHQTKPTSHSLSLSXXXXFSGXXXXXXXXTK---PESRN 60

Query: 61  WLSHLQHGLAALSISLALNFSPLLAGGIAVASEFDVLNDGPPKESHLVDDAGVLSRVTKS 120
           WL   + GLAAL++SL L FSP+   G A+ASEF++LNDGPPKE+++VDDAGVLSRVTKS
Sbjct: 61  WLIDAKQGLAALALSLTLTFSPV---GTALASEFNILNDGPPKETYVVDDAGVLSRVTKS 120

Query: 121 DLKRLLTDLELRKNFHIDFVTVRKLTSKADAFEYADQVLERWYPTVEDGNNKGIVVLVTS 180
           DLK+LL+DLE RK   ++F+TVRKLTSKADAFEYADQVLE+WYP++E+GNNKGIVVL+TS
Sbjct: 121 DLKKLLSDLEYRKKLRLNFITVRKLTSKADAFEYADQVLEKWYPSIEEGNNKGIVVLITS 180

Query: 181 QKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAIDGLPDPG 240
           QKEGAITGGPAFI+AVGENILDATV+ENLPVLATDEKYNEA+YSSAKRLVAAIDG PDPG
Sbjct: 181 QKEGAITGGPAFIEAVGENILDATVSENLPVLATDEKYNEAVYSSAKRLVAAIDGQPDPG 240

Query: 241 GPSFKENKRESNFKSREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK 293
           GP+ K++KRESNFK++EET+EKRGQFSLVVGGLLVIAFVVPMAQY+AYVS+K
Sbjct: 241 GPTVKDSKRESNFKTKEETDEKRGQFSLVVGGLLVIAFVVPMAQYFAYVSRK 285

[Close]

BLAST of Carg17563 vs. Swiss-Prot
Match: sp|Q9ZVL6|U603_ARATH (UPF0603 protein At1g54780, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g54780 PE=1 SV=1)

HSP 1 Score: 379.4 bits (973), Expect = 3.6e-104
Identity = 203/292 (69.52%), Postives = 237/292 (81.16%), Query Frame = 0


Query: 1   METILFPHSLSPLFNPNPNPSTSKNLFPVSSQSRSKFQCFCKPISVSPKSLKSSLPVPSI 60
           MET+L P +LSP  NP P  S  +      S S S    F           K   P    
Sbjct: 1   METLLSPRALSPPLNPKP-LSLHQTKPTSHSLSLSXXXXFSGXXXXXXXXTK---PESRN 60

Query: 61  WLSHLQHGLAALSISLALNFSPLLAGGIAVASEFDVLNDGPPKESHLVDDAGVLSRVTKS 120
           WL   + GLAAL++SL L FSP+   G A+ASEF++LNDGPPKE+++VDDAGVLSRVTKS
Sbjct: 61  WLIDAKQGLAALALSLTLTFSPV---GTALASEFNILNDGPPKETYVVDDAGVLSRVTKS 120

Query: 121 DLKRLLTDLELRKNFHIDFVTVRKLTSKADAFEYADQVLERWYPTVEDGNNKGIVVLVTS 180
           DLK+LL+DLE RK   ++F+TVRKLTSKADAFEYADQVLE+WYP++E+GNNKGIVVL+TS
Sbjct: 121 DLKKLLSDLEYRKKLRLNFITVRKLTSKADAFEYADQVLEKWYPSIEEGNNKGIVVLITS 180

Query: 181 QKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAIDGLPDPG 240
           QKEGAITGGPAFI+AVGENILDATV+ENLPVLATDEKYNEA+YSSAKRLVAAIDG PDPG
Sbjct: 181 QKEGAITGGPAFIEAVGENILDATVSENLPVLATDEKYNEAVYSSAKRLVAAIDGQPDPG 240

Query: 241 GPSFKENKRESNFKSREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK 293
           GP+ K++KRESNFK++EET+EKRGQFSLVVGGLLVIAFVVPMAQY+AYVS+K
Sbjct: 241 GPTVKDSKRESNFKTKEETDEKRGQFSLVVGGLLVIAFVVPMAQYFAYVSRK 285

[Close]

BLAST of Carg17563 vs. Swiss-Prot
Match: sp|A2Y4G9|U603_ORYSI (UPF0603 protein OsI_019212, chloroplastic OS=Oryza sativa subsp. indica OX=39946 GN=OsI_19898 PE=3 SV=2)

HSP 1 Score: 352.1 bits (902), Expect = 6.1e-96
Identity = 178/232 (76.72%), Postives = 202/232 (87.07%), Query Frame = 0


Query: 61  WLSHLQHGLAALSISLALNFSPLLAGGIAVASEFDVLNDGPPKESHLVDDAGVLSRVTKS 120
           W + LQHGLA                     SEFDVLN GPP+++++VDDAGVLSRVTKS
Sbjct: 70  WATFLQHGLA--XXXXXXXXXXXXXXXXXXXSEFDVLNGGPPEDTYVVDDAGVLSRVTKS 129

Query: 121 DLKRLLTDLELRKNFHIDFVTVRKLTSKADAFEYADQVLERWYPTVEDGNNKGIVVLVTS 180
           D+KRL+ DLE RKN  I+F+TVRKLTSKADAFEYADQVLE+WYPTVE+GNNKGIVVLVTS
Sbjct: 130 DVKRLVRDLESRKNIRINFITVRKLTSKADAFEYADQVLEKWYPTVEEGNNKGIVVLVTS 189

Query: 181 QKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAIDGLPDPG 240
           QKEGAITGGPAF+QAVG+ ILD+TV+ENLPVLATDEKYNEAIY++AKRL AAIDGLPDPG
Sbjct: 190 QKEGAITGGPAFVQAVGDEILDSTVSENLPVLATDEKYNEAIYTTAKRLAAAIDGLPDPG 249

Query: 241 GPSFKENKRESNFKSREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK 293
           GP+FK+NKRESNFK++EETEEKRGQF+LVVGGLLVIAFVVPMAQYYAY+SKK
Sbjct: 250 GPTFKDNKRESNFKTKEETEEKRGQFTLVVGGLLVIAFVVPMAQYYAYISKK 299

[Close]

BLAST of Carg17563 vs. Swiss-Prot
Match: sp|Q6ATY4|U603_ORYSJ (UPF0603 protein Os05g0401100, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0401100 PE=3 SV=1)

HSP 1 Score: 352.1 bits (902), Expect = 6.1e-96
Identity = 178/232 (76.72%), Postives = 202/232 (87.07%), Query Frame = 0


Query: 61  WLSHLQHGLAALSISLALNFSPLLAGGIAVASEFDVLNDGPPKESHLVDDAGVLSRVTKS 120
           W + LQHGLA                     SEFDVLN GPP+++++VDDAGVLSRVTKS
Sbjct: 70  WATFLQHGLA--XXXXXXXXXXXXXXXXXXXSEFDVLNGGPPEDTYVVDDAGVLSRVTKS 129

Query: 121 DLKRLLTDLELRKNFHIDFVTVRKLTSKADAFEYADQVLERWYPTVEDGNNKGIVVLVTS 180
           D+KRL+ DLE RKN  I+F+TVRKLTSKADAFEYADQVLE+WYPTVE+GNNKGIVVLVTS
Sbjct: 130 DVKRLVRDLESRKNIRINFITVRKLTSKADAFEYADQVLEKWYPTVEEGNNKGIVVLVTS 189

Query: 181 QKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAIDGLPDPG 240
           QKEGAITGGPAF+QAVG+ ILD+TV+ENLPVLATDEKYNEAIY++AKRL AAIDGLPDPG
Sbjct: 190 QKEGAITGGPAFVQAVGDEILDSTVSENLPVLATDEKYNEAIYTTAKRLAAAIDGLPDPG 249

Query: 241 GPSFKENKRESNFKSREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK 293
           GP+FK+NKRESNFK++EETEEKRGQF+LVVGGLLVIAFVVPMAQYYAY+SKK
Sbjct: 250 GPTFKDNKRESNFKTKEETEEKRGQFTLVVGGLLVIAFVVPMAQYYAYISKK 299

[Close]

BLAST of Carg17563 vs. TrEMBL
Match: tr|A0A1S3C0U8|A0A1S3C0U8_CUCME (UPF0603 protein At1g54780, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495349 PE=4 SV=1)

HSP 1 Score: 492.7 bits (1267), Expect = 5.9e-136
Identity = 261/298 (87.58%), Postives = 272/298 (91.28%), Query Frame = 0


Query: 1   METILFPHSLSPLFNPNPNPSTSKNLFPVSSQSRSKFQCFCKPISVS------PKSLKSS 60
           METIL PHSLSPL   NP PS+SKNL   S+Q RS      KPIS+S      PKSL+SS
Sbjct: 1   METILSPHSLSPLL--NPKPSSSKNLSLYSTQPRSNLVSLSKPISLSLKTPSPPKSLRSS 60

Query: 61  LPVPSIWLSHLQHGLAALSISLALNFSPLLAGGIAVASEFDVLNDGPPKESHLVDDAGVL 120
           LPVPS W SHLQHGLAA++ISLALNFSPLLAG  A+ASEFDVLNDGPPKE+H+VDDAGVL
Sbjct: 61  LPVPSTWFSHLQHGLAAVAISLALNFSPLLAGHNALASEFDVLNDGPPKETHVVDDAGVL 120

Query: 121 SRVTKSDLKRLLTDLELRKNFHIDFVTVRKLTSKADAFEYADQVLERWYPTVEDGNNKGI 180
           SRVTKSDLKRLLTDLE RKNFHIDFVTVRKLTSKADAFEYADQVLERWYPTVEDGNNKGI
Sbjct: 121 SRVTKSDLKRLLTDLETRKNFHIDFVTVRKLTSKADAFEYADQVLERWYPTVEDGNNKGI 180

Query: 181 VVLVTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAID 240
           VVLVTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAID
Sbjct: 181 VVLVTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAID 240

Query: 241 GLPDPGGPSFKENKRESNFKSREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK 293
           GLPDPGGPSFK+NKRESNFK+REETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK
Sbjct: 241 GLPDPGGPSFKDNKRESNFKTREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK 296

[Close]

BLAST of Carg17563 vs. TrEMBL
Match: tr|A0A0A0LGA5|A0A0A0LGA5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G020910 PE=4 SV=1)

HSP 1 Score: 479.6 bits (1233), Expect = 5.1e-132
Identity = 251/298 (84.23%), Postives = 271/298 (90.94%), Query Frame = 0


Query: 1   METILFPHSLSPLFNPNPNPSTSKNLFPVSSQSRSKFQCFCKPISVS------PKSLKSS 60
           METIL P+SLSP+ NP P+ S + +L+  S+Q RS      KPIS+S      PKSL+SS
Sbjct: 1   METILSPYSLSPILNPKPSSSKNPSLYH-STQPRSNLASLSKPISLSLKTPSPPKSLRSS 60

Query: 61  LPVPSIWLSHLQHGLAALSISLALNFSPLLAGGIAVASEFDVLNDGPPKESHLVDDAGVL 120
           LP PS W SHLQHGLAA++ISLALNFSPLLAG  A+ASEFDVL+DGPPKE+HLVDDAGVL
Sbjct: 61  LPFPSTWFSHLQHGLAAVAISLALNFSPLLAGHNALASEFDVLSDGPPKETHLVDDAGVL 120

Query: 121 SRVTKSDLKRLLTDLELRKNFHIDFVTVRKLTSKADAFEYADQVLERWYPTVEDGNNKGI 180
           SRVTKSDLKRLLTDLE+RKNFHIDFVTVRKLTSKADAFEYADQVLERWYPTVEDGNNKGI
Sbjct: 121 SRVTKSDLKRLLTDLEMRKNFHIDFVTVRKLTSKADAFEYADQVLERWYPTVEDGNNKGI 180

Query: 181 VVLVTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAID 240
           VVLVTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAID
Sbjct: 181 VVLVTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAID 240

Query: 241 GLPDPGGPSFKENKRESNFKSREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK 293
           GLPD GGPSFK+NKRESNFK+REETEEKRGQF+LVVGGLLVIAF+VPMAQYYAY+SKK
Sbjct: 241 GLPDTGGPSFKDNKRESNFKTREETEEKRGQFTLVVGGLLVIAFIVPMAQYYAYISKK 297

[Close]

BLAST of Carg17563 vs. TrEMBL
Match: tr|A0A2N9J993|A0A2N9J993_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS29479 PE=4 SV=1)

HSP 1 Score: 446.4 bits (1147), Expect = 4.8e-122
Identity = 233/297 (78.45%), Postives = 260/297 (87.54%), Query Frame = 0


Query: 1   METILFPHSLSPLFNPNPNPSTSKNLFPVSSQSRSKFQCFCKPISVS-----PKSLKSSL 60
           METIL PHSLSPLF  NP PS+ K L   S Q RS      KPI+ S     P+SLK SL
Sbjct: 1   METILSPHSLSPLF--NPKPSSPKTLLSSSLQPRSNSLSLTKPITSSLKKHKPQSLKPSL 60

Query: 61  PVPSIWLSHLQHGLAALSISLALNFSPLLAGGIAVASEFDVLNDGPPKESHLVDDAGVLS 120
           P+P+ W S+ Q GL AL+++LALNFSPLL  G A+ASEFDVLN GPPKES++VDDAGVLS
Sbjct: 61  PIPTNWFSYAQQGLTALALTLALNFSPLLPSGNALASEFDVLNQGPPKESYVVDDAGVLS 120

Query: 121 RVTKSDLKRLLTDLELRKNFHIDFVTVRKLTSKADAFEYADQVLERWYPTVEDGNNKGIV 180
           RVT+SDLK LL+DLE RKNFHI+FVTVRKLTSKADAFEYADQVLERWYP+VEDGN+KGIV
Sbjct: 121 RVTRSDLKSLLSDLESRKNFHINFVTVRKLTSKADAFEYADQVLERWYPSVEDGNDKGIV 180

Query: 181 VLVTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAIDG 240
           VLVTSQKEGA+TGGPAF+QAVGE+ILDATV+ENLPVLAT+EKYNEA+YSSAKRLVAAIDG
Sbjct: 181 VLVTSQKEGAVTGGPAFVQAVGESILDATVSENLPVLATEEKYNEAVYSSAKRLVAAIDG 240

Query: 241 LPDPGGPSFKENKRESNFKSREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK 293
           LPDPGGP F ENKRESNFK++EETEEKRGQF+LVVGGLLVIAFVVPMAQYYAYVS+K
Sbjct: 241 LPDPGGPKFNENKRESNFKTKEETEEKRGQFALVVGGLLVIAFVVPMAQYYAYVSRK 295

[Close]

BLAST of Carg17563 vs. TrEMBL
Match: tr|A0A2P4HCJ9|A0A2P4HCJ9_QUESU (Upf0603 protein, chloroplastic OS=Quercus suber OX=58331 GN=CFP56_66735 PE=4 SV=1)

HSP 1 Score: 441.0 bits (1133), Expect = 2.0e-120
Identity = 232/297 (78.11%), Postives = 263/297 (88.55%), Query Frame = 0


Query: 1   METILFPHSLSPLFNPNPNPSTSKNLFPVSSQSRSKFQCFCKPISVSPKS-----LKSSL 60
           METIL P SLSPLF  NP PS+ K L   S Q +S      KPI+ S K      LK SL
Sbjct: 1   METILSPRSLSPLF--NPKPSSPKTLVS-SLQPKSNSLSLTKPITSSLKKHQLQFLKPSL 60

Query: 61  PVPSIWLSHLQHGLAALSISLALNFSPLLAGGIAVASEFDVLNDGPPKESHLVDDAGVLS 120
           P+P+ W S+ Q GLAAL+++LALNFSPLL+ G A+ASEFDV+N+GPPKE+++VDDAGVLS
Sbjct: 61  PIPTSWFSYAQQGLAALALTLALNFSPLLSSGNALASEFDVINEGPPKETYVVDDAGVLS 120

Query: 121 RVTKSDLKRLLTDLELRKNFHIDFVTVRKLTSKADAFEYADQVLERWYPTVEDGNNKGIV 180
           RVT+SDLKRLL+DLE RKNFHI+FVTVRKLTSKADAFEYADQVLERWYP+VE+GN+KGIV
Sbjct: 121 RVTRSDLKRLLSDLESRKNFHINFVTVRKLTSKADAFEYADQVLERWYPSVEEGNDKGIV 180

Query: 181 VLVTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAIDG 240
           VLVTSQKEGAITGGPAF+QAVGENILDATV+ENLPVLAT+EKYNEA+YSSAKRLVAAIDG
Sbjct: 181 VLVTSQKEGAITGGPAFVQAVGENILDATVSENLPVLATEEKYNEAVYSSAKRLVAAIDG 240

Query: 241 LPDPGGPSFKENKRESNFKSREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK 293
           LPDPGGP+FK+NKRESNFK++EETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVS+K
Sbjct: 241 LPDPGGPTFKDNKRESNFKTKEETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSRK 294

[Close]

BLAST of Carg17563 vs. TrEMBL
Match: tr|A0A2R6RBH4|A0A2R6RBH4_ACTCH (UPF0603 protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc09470 PE=4 SV=1)

HSP 1 Score: 438.7 bits (1127), Expect = 1.0e-119
Identity = 229/297 (77.10%), Postives = 256/297 (86.20%), Query Frame = 0


Query: 1   METILFPHSLSPLFNPNPNPSTSKNLFPVSSQSRSKFQCFCKPISVS-----PKSLKSSL 60
           ME IL PHS  PL   NP  S+ K+L   S Q RSK     K IS S     P+S+  + 
Sbjct: 1   MEIILSPHSFCPLL--NPKTSSPKSLLSPSLQPRSKSLSTTKTISCSLKKQLPQSINQAF 60

Query: 61  PVPSIWLSHLQHGLAALSISLALNFSPLLAGGIAVASEFDVLNDGPPKESHLVDDAGVLS 120
           P P  W SH+QHGLAAL++SLALNF P+L+ G A ASEFDVLNDGPP+ES++VDDAGVLS
Sbjct: 61  PTPKTWFSHVQHGLAALALSLALNFFPILSTGSAFASEFDVLNDGPPEESYVVDDAGVLS 120

Query: 121 RVTKSDLKRLLTDLELRKNFHIDFVTVRKLTSKADAFEYADQVLERWYPTVEDGNNKGIV 180
           RVTKSDLKRLL+DLE RKNFHI+FVTVRKLTSKADAFEYADQVLERWYPT+EDG+NKGIV
Sbjct: 121 RVTKSDLKRLLSDLESRKNFHINFVTVRKLTSKADAFEYADQVLERWYPTIEDGSNKGIV 180

Query: 181 VLVTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAIDG 240
           VLVTSQKEGAITGGP F++AVG++ILDATV+ENLPVLAT+EKYNEA+YSSAKRLVAAIDG
Sbjct: 181 VLVTSQKEGAITGGPDFVKAVGDSILDATVSENLPVLATEEKYNEAVYSSAKRLVAAIDG 240

Query: 241 LPDPGGPSFKENKRESNFKSREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK 293
           LPDPGGP FKENKRESNFK++EETEEKRGQF+LVVGGLLVIAFVVPMAQYYAYVSKK
Sbjct: 241 LPDPGGPQFKENKRESNFKTKEETEEKRGQFTLVVGGLLVIAFVVPMAQYYAYVSKK 295

The following BLAST results are available for this feature:

BLAST of Carg17563 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022937634.1	1.3e-158	100.00	UPF0603 protein At1g54780, chloroplastic-like [Cucurbita moschata]	[more]
XP_023521578.1	1.6e-156	98.63	UPF0603 protein At1g54780, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_0...	[more]
XP_022965867.1	3.8e-155	97.95	UPF0603 protein At1g54780, chloroplastic-like [Cucurbita maxima]	[more]
XP_022946287.1	4.7e-137	89.23	UPF0603 protein At1g54780, chloroplastic-like [Cucurbita moschata]	[more]
XP_022999120.1	4.0e-136	88.04	UPF0603 protein At1g54780, chloroplastic-like [Cucurbita maxima]	[more]

BLAST of Carg17563 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G54780.1	2.0e-105	69.52	thylakoid lumen 18.3 kDa protein	[more]

BLAST of Carg17563 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9ZVL6\|U603_ARATH	3.6e-104	69.52	UPF0603 protein At1g54780, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g...	[more]
sp\|A2Y4G9\|U603_ORYSI	6.1e-96	76.72	UPF0603 protein OsI_019212, chloroplastic OS=Oryza sativa subsp. indica OX=39946...	[more]
sp\|Q6ATY4\|U603_ORYSJ	6.1e-96	76.72	UPF0603 protein Os05g0401100, chloroplastic OS=Oryza sativa subsp. japonica OX=3...	[more]

BLAST of Carg17563 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C0U8\|A0A1S3C0U8_CUCME	5.9e-136	87.58	UPF0603 protein At1g54780, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495349...	[more]
tr\|A0A0A0LGA5\|A0A0A0LGA5_CUCSA	5.1e-132	84.23	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G020910 PE=4 SV=1	[more]
tr\|A0A2N9J993\|A0A2N9J993_FAGSY	4.8e-122	78.45	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS29479 PE=4 SV=1	[more]
tr\|A0A2P4HCJ9\|A0A2P4HCJ9_QUESU	2.0e-120	78.11	Upf0603 protein, chloroplastic OS=Quercus suber OX=58331 GN=CFP56_66735 PE=4 SV=...	[more]
tr\|A0A2R6RBH4\|A0A2R6RBH4_ACTCH	1.0e-119	77.10	UPF0603 protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc094...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007621	TPM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg17563-RA	Carg17563-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007621	TPM domain	PFAM	PF04536	TPM_phosphatase	coord: 108..230 e-value: 8.5E-18 score: 64.6
None	No IPR available	GENE3D	G3DSA:3.10.310.50		coord: 90..242 e-value: 2.2E-25 score: 90.7
None	No IPR available	PANTHER	PTHR30373:SF6	SUBFAMILY NOT NAMED	coord: 1..292
None	No IPR available	PANTHER	PTHR30373	UNCHARACTERIZED	coord: 1..292

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg17563	Cla019859	Watermelon (97103) v1	carwmB0714
Carg17563	Csa2G020910	Cucumber (Chinese Long) v2	carcuB0735
Carg17563	MELO3C004307	Melon (DHL92) v3.5.1	carmeB0711
Carg17563	ClCG02G016070	Watermelon (Charleston Gray)	carwcgB0692
Carg17563	CSPI02G03580	Wild cucumber (PI 183967)	carcpiB0751
Carg17563	Cucsa.091810	Cucumber (Gy14) v1	carcgyB0803
Carg17563	CmaCh05G011610	Cucurbita maxima (Rimu)	carcmaB1001
Carg17563	CmaCh12G010900	Cucurbita maxima (Rimu)	carcmaB1000
Carg17563	CmoCh05G011720	Cucurbita moschata (Rifu)	carcmoB0974
Carg17563	CmoCh12G011070	Cucurbita moschata (Rifu)	carcmoB0973
Carg17563	Lsi11G005080	Bottle gourd (USVL1VR-Ls)	carlsiB654
Carg17563	Cp4.1LG11g09490	Cucurbita pepo (Zucchini)	carcpeB1005
Carg17563	Cp4.1LG07g09290	Cucurbita pepo (Zucchini)	carcpeB1006
Carg17563	CsGy2G003690	Cucumber (Gy14) v2	carcgybB0713
Carg17563	MELO3C004307.2	Melon (DHL92) v3.6.1	carmedB0724
Carg17563	CsaV3_2G004910	Cucumber (Chinese Long) v3	carcucB0754
Carg17563	Cla97C02G041870	Watermelon (97103) v2	carwmbB0746

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg17563	Carg12882	Silver-seed gourd	carcarB587

The following block(s) are covering this gene:

None