Carg18279 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg18279
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Transcription repressor KAN1
Location	Cucurbita_argyrosperma_scaffold_120 : 401099 .. 401660 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCAACATTCAAAGCTTTATAAATATTCAATCTTCATCTTCATCTTCATCATCATCATCTTCATCTTCATCTTCATCTTCATTTCTTGATCTTGATCTTTCTCTTCAAATTTCTCCTCCTAATAATGGAGTTGGGGCTGTTCATACTCATAAATTCAATCAAATTACTAATGGGGTTTGGTTTTTCAATCATCATAATCATCATCATCATGCCTTTGCTTTGCCCCCACCGTTTCTTCGGAACCAATTGGATCTGGGTCGGTCGCCGATGGCAAGAGGGCGGTGCACGAGGGCGCCGAGGATGCGGTGGACGAGTACCCTCCATGCTCAATTTGTTCATGCTGTTGAGCTTCTTGGTGGCCATGAAAGTAACAATTTTGAAGCTTTATTTTCATTTACTTTTTTTTTTTTAGATTGAATGTTCTAAAAGTTTGGTTTGTTTGTGTTGTTTTTCAGGAGCTACACCTAAATCTGTTCTAGAGCTTATGGATGTCAAGGATCTTACATTGGCTCACGTCAAAAGCCATTTACAGGTTTTTTTTTTTAATACTACGTTATAA

mRNA sequence

ATGCCCAACATTCAAAGCTTTATAAATATTCAATCTTCATCTTCATCTTCATCATCATCATCTTCATCTTCATCTTCATCTTCATTTCTTGATCTTGATCTTTCTCTTCAAATTTCTCCTCCTAATAATGGAGTTGGGGCTGTTCATACTCATAAATTCAATCAAATTACTAATGGGGTTTGGTTTTTCAATCATCATAATCATCATCATCATGCCTTTGCTTTGCCCCCACCGTTTCTTCGGAACCAATTGGATCTGGGTCGGTCGCCGATGGCAAGAGGGCGGTGCACGAGGGCGCCGAGGATGCGGTGGACGAGTACCCTCCATGCTCAATTTGTTCATGCTGTTGAGCTTCTTGGTGGCCATGAAAGAGCTACACCTAAATCTGTTCTAGAGCTTATGGATGTCAAGGATCTTACATTGGCTCACGTCAAAAGCCATTTACAGGTTTTTTTTTTTAATACTACGTTATAA

Coding sequence (CDS)

ATGCCCAACATTCAAAGCTTTATAAATATTCAATCTTCATCTTCATCTTCATCATCATCATCTTCATCTTCATCTTCATCTTCATTTCTTGATCTTGATCTTTCTCTTCAAATTTCTCCTCCTAATAATGGAGTTGGGGCTGTTCATACTCATAAATTCAATCAAATTACTAATGGGGTTTGGTTTTTCAATCATCATAATCATCATCATCATGCCTTTGCTTTGCCCCCACCGTTTCTTCGGAACCAATTGGATCTGGGTCGGTCGCCGATGGCAAGAGGGCGGTGCACGAGGGCGCCGAGGATGCGGTGGACGAGTACCCTCCATGCTCAATTTGTTCATGCTGTTGAGCTTCTTGGTGGCCATGAAAGAGCTACACCTAAATCTGTTCTAGAGCTTATGGATGTCAAGGATCTTACATTGGCTCACGTCAAAAGCCATTTACAGGTTTTTTTTTTTAATACTACGTTATAA

Protein sequence

MPNIQSFINIQSSSSSSSSSSSSSSSSSFLDLDLSLQISPPNNGVGAVHTHKFNQITNGVWFFNHHNHHHHAFALPPPFLRNQLDLGRSPMARGRCTRAPRMRWTSTLHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQVFFFNTTL

Homology

[Close]

BLAST of Carg18279 vs. NCBI nr
Match: XP_022922712.1 (transcription repressor KAN1-like isoform X3 [Cucurbita moschata])

HSP 1 Score: 193.0 bits (489), Expect = 7.8e-46
Identity = 145/152 (95.39%), Postives = 146/152 (96.05%), Query Frame = 0


Query: 1   MPNIQSFINIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPNNGVGAVHTHKFNQITNGV 60
           MPNIQSFINI  XXXXXXXXXXXXXXXXXXXXXXXXXXXPPNNGVGAVHTHKFNQITNGV
Sbjct: 1   MPNIQSFINI--XXXXXXXXXXXXXXXXXXXXXXXXXXXPPNNGVGAVHTHKFNQITNGV 60

Query: 61  W-FXXXXXXXXXXXXXXXXFLRNQLDLGRSPMARGRCTRAPRMRWTSTLHAQFVHAVELL 120
           W F  XXXXXXXXXXXXXXFLRNQLD GRSPMARGRCTRAPRMRWTSTLHAQFVHAVELL
Sbjct: 61  WLFNHXXXXXXXXXXXXXXFLRNQLDPGRSPMARGRCTRAPRMRWTSTLHAQFVHAVELL 120

Query: 121 GGHERATPKSVLELMDVKDLTLAHVKSHLQVF 152
           GGHERATPKSVLELMDVKDLTLAHVKSHLQ+F
Sbjct: 121 GGHERATPKSVLELMDVKDLTLAHVKSHLQMF 150

[Close]

BLAST of Carg18279 vs. NCBI nr
Match: XP_022922720.1 (transcription repressor KAN1-like isoform X4 [Cucurbita moschata])

HSP 1 Score: 193.0 bits (489), Expect = 7.8e-46
Identity = 145/152 (95.39%), Postives = 146/152 (96.05%), Query Frame = 0


Query: 1   MPNIQSFINIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPNNGVGAVHTHKFNQITNGV 60
           MPNIQSFINI  XXXXXXXXXXXXXXXXXXXXXXXXXXXPPNNGVGAVHTHKFNQITNGV
Sbjct: 1   MPNIQSFINI--XXXXXXXXXXXXXXXXXXXXXXXXXXXPPNNGVGAVHTHKFNQITNGV 60

Query: 61  W-FXXXXXXXXXXXXXXXXFLRNQLDLGRSPMARGRCTRAPRMRWTSTLHAQFVHAVELL 120
           W F  XXXXXXXXXXXXXXFLRNQLD GRSPMARGRCTRAPRMRWTSTLHAQFVHAVELL
Sbjct: 61  WLFNHXXXXXXXXXXXXXXFLRNQLDPGRSPMARGRCTRAPRMRWTSTLHAQFVHAVELL 120

Query: 121 GGHERATPKSVLELMDVKDLTLAHVKSHLQVF 152
           GGHERATPKSVLELMDVKDLTLAHVKSHLQ+F
Sbjct: 121 GGHERATPKSVLELMDVKDLTLAHVKSHLQMF 150

[Close]

BLAST of Carg18279 vs. NCBI nr
Match: XP_022922704.1 (transcription repressor KAN1-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 193.0 bits (489), Expect = 7.8e-46
Identity = 145/152 (95.39%), Postives = 146/152 (96.05%), Query Frame = 0


Query: 1   MPNIQSFINIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPNNGVGAVHTHKFNQITNGV 60
           MPNIQSFINI  XXXXXXXXXXXXXXXXXXXXXXXXXXXPPNNGVGAVHTHKFNQITNGV
Sbjct: 1   MPNIQSFINI--XXXXXXXXXXXXXXXXXXXXXXXXXXXPPNNGVGAVHTHKFNQITNGV 60

Query: 61  W-FXXXXXXXXXXXXXXXXFLRNQLDLGRSPMARGRCTRAPRMRWTSTLHAQFVHAVELL 120
           W F  XXXXXXXXXXXXXXFLRNQLD GRSPMARGRCTRAPRMRWTSTLHAQFVHAVELL
Sbjct: 61  WLFNHXXXXXXXXXXXXXXFLRNQLDPGRSPMARGRCTRAPRMRWTSTLHAQFVHAVELL 120

Query: 121 GGHERATPKSVLELMDVKDLTLAHVKSHLQVF 152
           GGHERATPKSVLELMDVKDLTLAHVKSHLQ+F
Sbjct: 121 GGHERATPKSVLELMDVKDLTLAHVKSHLQMF 150

[Close]

BLAST of Carg18279 vs. NCBI nr
Match: XP_022922696.1 (transcription repressor KAN1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 193.0 bits (489), Expect = 7.8e-46
Identity = 145/152 (95.39%), Postives = 146/152 (96.05%), Query Frame = 0


Query: 1   MPNIQSFINIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPNNGVGAVHTHKFNQITNGV 60
           MPNIQSFINI  XXXXXXXXXXXXXXXXXXXXXXXXXXXPPNNGVGAVHTHKFNQITNGV
Sbjct: 1   MPNIQSFINI--XXXXXXXXXXXXXXXXXXXXXXXXXXXPPNNGVGAVHTHKFNQITNGV 60

Query: 61  W-FXXXXXXXXXXXXXXXXFLRNQLDLGRSPMARGRCTRAPRMRWTSTLHAQFVHAVELL 120
           W F  XXXXXXXXXXXXXXFLRNQLD GRSPMARGRCTRAPRMRWTSTLHAQFVHAVELL
Sbjct: 61  WLFNHXXXXXXXXXXXXXXFLRNQLDPGRSPMARGRCTRAPRMRWTSTLHAQFVHAVELL 120

Query: 121 GGHERATPKSVLELMDVKDLTLAHVKSHLQVF 152
           GGHERATPKSVLELMDVKDLTLAHVKSHLQ+F
Sbjct: 121 GGHERATPKSVLELMDVKDLTLAHVKSHLQMF 150

[Close]

BLAST of Carg18279 vs. NCBI nr
Match: XP_022990568.1 (transcription repressor KAN1-like isoform X3 [Cucurbita maxima])

HSP 1 Score: 189.9 bits (481), Expect = 6.6e-45
Identity = 134/151 (88.74%), Postives = 137/151 (90.73%), Query Frame = 0


Query: 1   MPNIQSFINIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPNNGVGAVHTHKFNQITNGV 60
           MPNIQSFINI   XXXXXXXXXXXXXXXXXXXXXXXXXXPPNNGVGAVH HKFNQITNGV
Sbjct: 1   MPNIQSFINI---XXXXXXXXXXXXXXXXXXXXXXXXXXPPNNGVGAVHNHKFNQITNGV 60

Query: 61  WFXXXXXXXXXXXXXXXXFLRNQLDLGRSPMARGRCTRAPRMRWTSTLHAQFVHAVELLG 120
           W   XXXXXXXX      FL++QLD GRSPMARGRCTRAPRMRWTSTLHAQFVHAVELLG
Sbjct: 61  WLFNXXXXXXXXFASPLPFLQHQLDPGRSPMARGRCTRAPRMRWTSTLHAQFVHAVELLG 120

Query: 121 GHERATPKSVLELMDVKDLTLAHVKSHLQVF 152
           GHERATPKSVLELMDVKDLTLAHVKSHLQ+F
Sbjct: 121 GHERATPKSVLELMDVKDLTLAHVKSHLQMF 148

[Close]

BLAST of Carg18279 vs. TAIR10
Match: AT1G32240.1 (Homeodomain-like superfamily protein)

HSP 1 Score: 108.2 bits (269), Expect = 4.6e-24
Identity = 51/57 (89.47%), Postives = 55/57 (96.49%), Query Frame = 0


Query: 95  RCTRAPRMRWTSTLHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQVF 152
           R  RAPRMRWT+TLHA+FVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ++
Sbjct: 209 RSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 265

[Close]

BLAST of Carg18279 vs. TAIR10
Match: AT5G16560.1 (Homeodomain-like superfamily protein)

HSP 1 Score: 108.2 bits (269), Expect = 4.6e-24
Identity = 52/61 (85.25%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 91  MARGRCTRAPRMRWTSTLHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQV 150
           M   R  RAPRMRWTS+LHA+FVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ+
Sbjct: 211 MPTKRSMRAPRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQM 270

Query: 151 F 152
           +
Sbjct: 271 Y 271

[Close]

BLAST of Carg18279 vs. TAIR10
Match: AT5G42630.1 (Homeodomain-like superfamily protein)

HSP 1 Score: 105.9 bits (263), Expect = 2.3e-23
Identity = 50/57 (87.72%), Postives = 54/57 (94.74%), Query Frame = 0


Query: 95  RCTRAPRMRWTSTLHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQVF 152
           R  RAPRMRWTSTLHA FVHAV+LLGGHERATPKSVLELM+VKDLTLAHVKSHLQ++
Sbjct: 101 RSIRAPRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMY 157

[Close]

BLAST of Carg18279 vs. TAIR10
Match: AT4G17695.1 (Homeodomain-like superfamily protein)

HSP 1 Score: 104.8 bits (260), Expect = 5.1e-23
Identity = 49/57 (85.96%), Postives = 54/57 (94.74%), Query Frame = 0


Query: 95  RCTRAPRMRWTSTLHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQVF 152
           R  RAPRMRWT+TLHA FVHAV+LLGGHERATPKSVLELMDV+DLTLAHVKSHLQ++
Sbjct: 160 RGVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQMY 216

[Close]

BLAST of Carg18279 vs. TAIR10
Match: AT2G02060.1 (Homeodomain-like superfamily protein)

HSP 1 Score: 81.3 bits (199), Expect = 6.0e-16
Identity = 36/52 (69.23%), Postives = 44/52 (84.62%), Query Frame = 0


Query: 100 PRMRWTSTLHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQVF 152
           PR+RWT  LH  FVHAVE+LGG  RATPK VL++MDVK LT++HVKSHLQ++
Sbjct: 30  PRLRWTPDLHRCFVHAVEILGGQHRATPKLVLKMMDVKGLTISHVKSHLQMY 81

[Close]

BLAST of Carg18279 vs. Swiss-Prot
Match: sp|Q0J235|ROLL9_ORYSJ (Probable transcription factor RL9 OS=Oryza sativa subsp. japonica OX=39947 GN=RL9 PE=2 SV=2)

HSP 1 Score: 109.4 bits (272), Expect = 3.7e-23
Identity = 52/57 (91.23%), Postives = 55/57 (96.49%), Query Frame = 0


Query: 95  RCTRAPRMRWTSTLHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQVF 152
           R  RAPRMRWTSTLHA+FVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ++
Sbjct: 320 RSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 376

[Close]

BLAST of Carg18279 vs. Swiss-Prot
Match: sp|Q93WJ9|KAN1_ARATH (Transcription repressor KAN1 OS=Arabidopsis thaliana OX=3702 GN=KAN1 PE=1 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 8.3e-23
Identity = 52/61 (85.25%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 91  MARGRCTRAPRMRWTSTLHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQV 150
           M   R  RAPRMRWTS+LHA+FVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ+
Sbjct: 211 MPTKRSMRAPRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQM 270

Query: 151 F 152
           +
Sbjct: 271 Y 271

[Close]

BLAST of Carg18279 vs. Swiss-Prot
Match: sp|Q9C616|KAN2_ARATH (Probable transcription factor KAN2 OS=Arabidopsis thaliana OX=3702 GN=KAN2 PE=2 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 8.3e-23
Identity = 51/57 (89.47%), Postives = 55/57 (96.49%), Query Frame = 0


Query: 95  RCTRAPRMRWTSTLHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQVF 152
           R  RAPRMRWT+TLHA+FVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ++
Sbjct: 209 RSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 265

[Close]

BLAST of Carg18279 vs. Swiss-Prot
Match: sp|Q9FJV5|KAN4_ARATH (Probable transcription factor KAN4 OS=Arabidopsis thaliana OX=3702 GN=KAN4 PE=1 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 4.1e-22
Identity = 50/57 (87.72%), Postives = 54/57 (94.74%), Query Frame = 0


Query: 95  RCTRAPRMRWTSTLHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQVF 152
           R  RAPRMRWTSTLHA FVHAV+LLGGHERATPKSVLELM+VKDLTLAHVKSHLQ++
Sbjct: 101 RSIRAPRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMY 157

[Close]

BLAST of Carg18279 vs. Swiss-Prot
Match: sp|Q941I2|KAN3_ARATH (Probable transcription factor KAN3 OS=Arabidopsis thaliana OX=3702 GN=KAN3 PE=2 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 9.2e-22
Identity = 49/57 (85.96%), Postives = 54/57 (94.74%), Query Frame = 0


Query: 95  RCTRAPRMRWTSTLHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQVF 152
           R  RAPRMRWT+TLHA FVHAV+LLGGHERATPKSVLELMDV+DLTLAHVKSHLQ++
Sbjct: 160 RGVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQMY 216

[Close]

BLAST of Carg18279 vs. TrEMBL
Match: tr|A0A1S3CJ01|A0A1S3CJ01_CUCME (probable transcription factor KAN2 OS=Cucumis melo OX=3656 GN=LOC103501386 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 4.3e-24
Identity = 61/74 (82.43%), Postives = 65/74 (87.84%), Query Frame = 0


Query: 79  FLRNQLDLGR-SPMARGRCTRAPRMRWTSTLHAQFVHAVELLGGHERATPKSVLELMDVK 138
           +L   LD  R S +ARGR  RAPRMRWTS+LHAQFVHAVELLGGHERATPKSVLELMDVK
Sbjct: 130 YLHYHLDSDRLSAVARGRSMRAPRMRWTSSLHAQFVHAVELLGGHERATPKSVLELMDVK 189

Query: 139 DLTLAHVKSHLQVF 152
           DLTLAHVKSHLQ+F
Sbjct: 190 DLTLAHVKSHLQMF 203

[Close]

BLAST of Carg18279 vs. TrEMBL
Match: tr|A0A0A0KTP4|A0A0A0KTP4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G429440 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.6e-23
Identity = 57/61 (93.44%), Postives = 59/61 (96.72%), Query Frame = 0


Query: 91  MARGRCTRAPRMRWTSTLHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQV 150
           MARGR  RAPRMRWTS+LHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ+
Sbjct: 1   MARGRSMRAPRMRWTSSLHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQM 60

Query: 151 F 152
           F
Sbjct: 61  F 61

[Close]

BLAST of Carg18279 vs. TrEMBL
Match: tr|M1B6Q9|M1B6Q9_SOLTU (Uncharacterized protein OS=Solanum tuberosum OX=4113 GN=102585505 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.4e-22
Identity = 60/74 (81.08%), Postives = 64/74 (86.49%), Query Frame = 0


Query: 79  FLRNQLDLGRSPMARGRCTRAPRMRWTSTLHAQFVHAVELLGGHERATPKSVLELMDVKD 138
           F R++  L R P+ R   TRAPRMRWTSTLHA+FVHAVELLGGHERATPKSVLELMDVKD
Sbjct: 146 FFRSRF-LSRYPVKRS--TRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKD 205

Query: 139 LTLAHVKSHLQVFF 153
           LTLAHVKSHLQV F
Sbjct: 206 LTLAHVKSHLQVIF 216

[Close]

BLAST of Carg18279 vs. TrEMBL
Match: tr|M1B6R0|M1B6R0_SOLTU (Uncharacterized protein OS=Solanum tuberosum OX=4113 GN=102585505 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 5.2e-22
Identity = 58/73 (79.45%), Postives = 64/73 (87.67%), Query Frame = 0


Query: 79  FLRNQLDLGRSPMARGRCTRAPRMRWTSTLHAQFVHAVELLGGHERATPKSVLELMDVKD 138
           F R++  L R P+ R   TRAPRMRWTSTLHA+FVHAVELLGGHERATPKSVLELMDVKD
Sbjct: 146 FFRSRF-LSRYPVKRS--TRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKD 205

Query: 139 LTLAHVKSHLQVF 152
           LTLAHVKSHLQ++
Sbjct: 206 LTLAHVKSHLQMY 215

[Close]

BLAST of Carg18279 vs. TrEMBL
Match: tr|B6SW93|B6SW93_MAIZE (KANADI-like transcription factor FEATHERED OS=Zea mays OX=4577 GN=100281529 PE=2 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 6.8e-22
Identity = 54/62 (87.10%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 90  PMARGRCTRAPRMRWTSTLHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 149
           P A  R  RAPRMRWTSTLHA+FVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ
Sbjct: 157 PTAAKRAARAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 216

Query: 150 VF 152
           ++
Sbjct: 217 MY 218

The following BLAST results are available for this feature:

BLAST of Carg18279 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022922712.1	7.8e-46	95.39	transcription repressor KAN1-like isoform X3 [Cucurbita moschata]	[more]
XP_022922720.1	7.8e-46	95.39	transcription repressor KAN1-like isoform X4 [Cucurbita moschata]	[more]
XP_022922704.1	7.8e-46	95.39	transcription repressor KAN1-like isoform X2 [Cucurbita moschata]	[more]
XP_022922696.1	7.8e-46	95.39	transcription repressor KAN1-like isoform X1 [Cucurbita moschata]	[more]
XP_022990568.1	6.6e-45	88.74	transcription repressor KAN1-like isoform X3 [Cucurbita maxima]	[more]

BLAST of Carg18279 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G32240.1	4.6e-24	89.47	Homeodomain-like superfamily protein	[more]
AT5G16560.1	4.6e-24	85.25	Homeodomain-like superfamily protein	[more]
AT5G42630.1	2.3e-23	87.72	Homeodomain-like superfamily protein	[more]
AT4G17695.1	5.1e-23	85.96	Homeodomain-like superfamily protein	[more]
AT2G02060.1	6.0e-16	69.23	Homeodomain-like superfamily protein	[more]

BLAST of Carg18279 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q0J235\|ROLL9_ORYSJ	3.7e-23	91.23	Probable transcription factor RL9 OS=Oryza sativa subsp. japonica OX=39947 GN=RL...	[more]
sp\|Q93WJ9\|KAN1_ARATH	8.3e-23	85.25	Transcription repressor KAN1 OS=Arabidopsis thaliana OX=3702 GN=KAN1 PE=1 SV=1	[more]
sp\|Q9C616\|KAN2_ARATH	8.3e-23	89.47	Probable transcription factor KAN2 OS=Arabidopsis thaliana OX=3702 GN=KAN2 PE=2 ...	[more]
sp\|Q9FJV5\|KAN4_ARATH	4.1e-22	87.72	Probable transcription factor KAN4 OS=Arabidopsis thaliana OX=3702 GN=KAN4 PE=1 ...	[more]
sp\|Q941I2\|KAN3_ARATH	9.2e-22	85.96	Probable transcription factor KAN3 OS=Arabidopsis thaliana OX=3702 GN=KAN3 PE=2 ...	[more]

BLAST of Carg18279 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CJ01\|A0A1S3CJ01_CUCME	4.3e-24	82.43	probable transcription factor KAN2 OS=Cucumis melo OX=3656 GN=LOC103501386 PE=4 ...	[more]
tr\|A0A0A0KTP4\|A0A0A0KTP4_CUCSA	1.6e-23	93.44	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G429440 PE=4 SV=1	[more]
tr\|M1B6Q9\|M1B6Q9_SOLTU	1.4e-22	81.08	Uncharacterized protein OS=Solanum tuberosum OX=4113 GN=102585505 PE=4 SV=1	[more]
tr\|M1B6R0\|M1B6R0_SOLTU	5.2e-22	79.45	Uncharacterized protein OS=Solanum tuberosum OX=4113 GN=102585505 PE=4 SV=1	[more]
tr\|B6SW93\|B6SW93_MAIZE	6.8e-22	87.10	KANADI-like transcription factor FEATHERED OS=Zea mays OX=4577 GN=100281529 PE=2...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR009057	Homeobox-like_sf
IPR006447	Myb_dom_plants
IPR001005	SANT/Myb

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18279-RA	Carg18279-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:1.10.10.60		coord: 96..156 e-value: 1.3E-22 score: 81.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	PANTHER	PTHR31496:SF12	TRANSCRIPTION FACTOR KAN4-RELATED	coord: 15..151
None	No IPR available	PANTHER	PTHR31496	FAMILY NOT NAMED	coord: 15..151
IPR001005	SANT/Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 101..150 e-value: 3.1E-6 score: 27.2
IPR006447	Myb domain, plants	TIGRFAM	TIGR01557	TIGR01557	coord: 100..153 e-value: 3.7E-23 score: 79.6
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	SSF46689	Homeodomain-like	coord: 96..154

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg18279	Cla009148	Watermelon (97103) v1	carwmB0524
Carg18279	Csa5G429440	Cucumber (Chinese Long) v2	carcuB0556
Carg18279	MELO3C025116	Melon (DHL92) v3.5.1	carmeB0531
Carg18279	ClCG01G008730	Watermelon (Charleston Gray)	carwcgB0510
Carg18279	CSPI05G15270	Wild cucumber (PI 183967)	carcpiB0562
Carg18279	CmaCh15G007530	Cucurbita maxima (Rimu)	carcmaB0737
Carg18279	CmaCh04G022830	Cucurbita maxima (Rimu)	carcmaB0738
Carg18279	CmoCh04G023860	Cucurbita moschata (Rifu)	carcmoB0716
Carg18279	CmoCh15G007780	Cucurbita moschata (Rifu)	carcmoB0714
Carg18279	Lsi09G009120	Bottle gourd (USVL1VR-Ls)	carlsiB480
Carg18279	Cp4.1LG01g19850	Cucurbita pepo (Zucchini)	carcpeB0747
Carg18279	CsGy5G015080	Cucumber (Gy14) v2	carcgybB0533
Carg18279	MELO3C025116.2	Melon (DHL92) v3.6.1	carmedB0536
Carg18279	CsaV3_5G024310	Cucumber (Chinese Long) v3	carcucB0564
Carg18279	Cla97C01G008960	Watermelon (97103) v2	carwmbB0551
Carg18279	Bhi12G001052	Wax gourd	carwgoB0637

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg18279	Carg01453	Silver-seed gourd	carcarB500

The following block(s) are covering this gene:


Gene	Organism	Block
Carg18279	Cucumber (Gy14) v1	carcgyB0608
Carg18279	Cucurbita pepo (Zucchini)	carcpeB0746