ClCG01G008730 (gene) Watermelon (Charleston Gray)

Overview
NameClCG01G008730
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionMyb family transcription factor family protein
LocationCG_Chr01 : 10490222 .. 10491017 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTAATATTCAAAGTTTTATAAATCTTCAATCTTCTTCTTCCTCCTCCTCTTCCTCTTCCTCTTCTTCTTCAACCCCATTTCTTGATCTTTCTCTTCAAATTAGTCCACCCAGTAATAATTCTACCTTCACTACTAATACTATTGAATCCTCTAATAATAGAATTATTATTGGGGCTCATAACCATAATCATAATCATAATCAATTATTTACTCATTTTCCTCATCATTACAATGATACATTCAATCAAATAAATAATGGGGTTTGGCTTGATCATCATGCTTTTTTCAACCCTATTAATGGTTTCCCAATTCATCCCAACCGTTCATTTTTCTCTTTCAAGGACTCTAAACAAATGTCTACTTCTCCTACTTTCTTCTCCTCCTCCTCCTCCTCTTCAATCTCGTACTCGAAAATCTCTACTTTCACTTCACCACCACCGTATCTCCATTACCAGTTGGACTCTGGTCGGTCGTCGACGGTGGCAAGAGGACGATCCATGAGGGCGCCGAGAATGCGGTGGACGAGCAGCCTCCACTCTCAGTTTGTTCATGCTGTTGAGCTTCTTGGCGGCCATGAAAGTAATACTTTGAAGTTTCATTCTCATTTTTTATTTTTTATTTTTTTATTTTGTATTTATTTTCCCTTTCTTCTTTCTAATTTTCTTTAATCATCATGTTGTGTTGTTATAAGGAGCTACGCCTAAATCAGTTCTAGAGCTCATGGATGTGAAGGATCTAACACTGGCTCACGTGAAAAGCCATTTACAGGTTTTTGTTTTAAATCCTTTTTAA

mRNA sequence

ATGCCTAATATTCAAAGTTTTATAAATCTTCAATCTTCTTCTTCCTCCTCCTCTTCCTCTTCCTCTTCTTCTTCAACCCCATTTCTTGATCTTTCTCTTCAAATTAGTCCACCCAGTAATAATTCTACCTTCACTACTAATACTATTGAATCCTCTAATAATAGAATTATTATTGGGGCTCATAACCATAATCATAATCATAATCAATTATTTACTCATTTTCCTCATCATTACAATGATACATTCAATCAAATAAATAATGGGGTTTGGCTTGATCATCATGCTTTTTTCAACCCTATTAATGGTTTCCCAATTCATCCCAACCGTTCATTTTTCTCTTTCAAGGACTCTAAACAAATGTCTACTTCTCCTACTTTCTTCTCCTCCTCCTCCTCCTCTTCAATCTCGTACTCGAAAATCTCTACTTTCACTTCACCACCACCGTATCTCCATTACCAGTTGGACTCTGGTCGGTCGTCGACGGTGGCAAGAGGACGATCCATGAGGGCGCCGAGAATGCGGTGGACGAGCAGCCTCCACTCTCAGTTTGTTCATGCTGTTGAGCTTCTTGGCGGCCATGAAAGAGCTACGCCTAAATCAGTTCTAGAGCTCATGGATGTGAAGGATCTAACACTGGCTCACGTGAAAAGCCATTTACAGGTTTTTGTTTTAAATCCTTTTTAA

Coding sequence (CDS)

ATGCCTAATATTCAAAGTTTTATAAATCTTCAATCTTCTTCTTCCTCCTCCTCTTCCTCTTCCTCTTCTTCTTCAACCCCATTTCTTGATCTTTCTCTTCAAATTAGTCCACCCAGTAATAATTCTACCTTCACTACTAATACTATTGAATCCTCTAATAATAGAATTATTATTGGGGCTCATAACCATAATCATAATCATAATCAATTATTTACTCATTTTCCTCATCATTACAATGATACATTCAATCAAATAAATAATGGGGTTTGGCTTGATCATCATGCTTTTTTCAACCCTATTAATGGTTTCCCAATTCATCCCAACCGTTCATTTTTCTCTTTCAAGGACTCTAAACAAATGTCTACTTCTCCTACTTTCTTCTCCTCCTCCTCCTCCTCTTCAATCTCGTACTCGAAAATCTCTACTTTCACTTCACCACCACCGTATCTCCATTACCAGTTGGACTCTGGTCGGTCGTCGACGGTGGCAAGAGGACGATCCATGAGGGCGCCGAGAATGCGGTGGACGAGCAGCCTCCACTCTCAGTTTGTTCATGCTGTTGAGCTTCTTGGCGGCCATGAAAGAGCTACGCCTAAATCAGTTCTAGAGCTCATGGATGTGAAGGATCTAACACTGGCTCACGTGAAAAGCCATTTACAGGTTTTTGTTTTAAATCCTTTTTAA

Protein sequence

MPNIQSFINLQSSSSSSSSSSSSSSTPFLDLSLQISPPSNNSTFTTNTIESSNNRIIIGAHNHNHNHNQLFTHFPHHYNDTFNQINNGVWLDHHAFFNPINGFPIHPNRSFFSFKDSKQMSTSPTFFSSSSSSSISYSKISTFTSPPPYLHYQLDSGRSSTVARGRSMRAPRMRWTSSLHSQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQVFVLNPF
Homology
[Close]
BLAST of ClCG01G008730 vs. Swiss-Prot
Match: KAN2_ARATH (Probable transcription factor KAN2 OS=Arabidopsis thaliana GN=KAN2 PE=2 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.4e-28
Identity = 90/234 (38.46%), Postives = 125/234 (53.42%), Query Frame = 1 

Query: 8   INLQSSSSSSSSSSSSSSTPFLDLSLQISPPSNNSTFTTNTIESSNNRIIIGAHNH---- 67
           ++ ++SS  S+S+S + + PF DLSL     SN S                  H+H    
Sbjct: 49  LDSRTSSLVSNSTSKTINHPFQDLSL-----SNISHHQQQQ-----------QHHHPQLL 108

Query: 68  -NHNHNQLFTHFPHHYNDTFNQINNGVWLDHHAFFNPINGFPI--------HPNRS---F 127
            N N + + T F          +   +  D +    PI G P+        HP+R     
Sbjct: 109 PNCNSSNILTSFQFPTQQQQQHLQGFLAHDLNTHLRPIRGIPLYHNPPPHHHPHRPPPPC 168

Query: 128 FSFKDSKQMSTSPTFFSSSSSSSISYSKISTFTSPPPYLHYQLDSGRSSTVAR---GRSM 187
           F F  S  + +S T   + + ++ S++  S+ ++P  + H+     R+  + R    RSM
Sbjct: 169 FPFDPSSLIPSSSTSSPALTGNNNSFNT-SSVSNPNYHNHHHQTLNRARFMPRFPAKRSM 228

Query: 188 RAPRMRWTSSLHSQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQVF 223
           RAPRMRWT++LH++FVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ++
Sbjct: 229 RAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 265

[Close]
BLAST of ClCG01G008730 vs. Swiss-Prot
Match: KAN1_ARATH (Transcription repressor KAN1 OS=Arabidopsis thaliana GN=KAN1 PE=1 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 4.6e-27
Identity = 95/251 (37.85%), Postives = 125/251 (49.80%), Query Frame = 1 

Query: 1   MPNIQSFINLQSSSSSSSSSS-----SSSSTPFLDLSLQISPPS------NNSTFTTNTI 60
           +P+I  + + +SS  SS  SS     + SS   L LS    P +      +  T      
Sbjct: 28  LPDIHQYHHNESSKESSRRSSQLENNNRSSNFELSLSHHNHPTARIFHCPDRRTLNLPHQ 87

Query: 61  ESSNNRIIIGAHNHNHNHNQLFTHFP-------HHYNDTFNQINN------GVWLDHHAF 120
           +  NN II G H           H P       H+ +  F+Q N+      G  +D  + 
Sbjct: 88  QHYNNPIINGVHQRVDESEISNLHRPIRGIPVYHNRSFPFHQQNSSLPSLGGGDMDQISI 147

Query: 121 FNPINGFPIHPNRSFFSFKDSKQMSTSPTFFSSSSSSSISYSKISTFTSPPPYLHYQLDS 180
            N  +G+    N ++ S + S ++   P       +    Y  + +  S  P+ H     
Sbjct: 148 LNSSSGY----NNAYRSLQSSPRLKGVPLHHHHHHNQ---YGVVGSSDSSSPHHHNHHHH 207

Query: 181 G--RSSTVAR---GRSMRAPRMRWTSSLHSQFVHAVELLGGHERATPKSVLELMDVKDLT 223
           G  RS  + +    RSMRAPRMRWTSSLH++FVHAVELLGGHERATPKSVLELMDVKDLT
Sbjct: 208 GMIRSRFLPKMPTKRSMRAPRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLT 267

[Close]
BLAST of ClCG01G008730 vs. Swiss-Prot
Match: ROLL9_ORYSJ (Probable transcription factor RL9 OS=Oryza sativa subsp. japonica GN=RL9 PE=2 SV=2)

HSP 1 Score: 111.7 bits (278), Expect = 1.1e-23
Identity = 69/178 (38.76%), Postives = 94/178 (52.81%), Query Frame = 1 

Query: 62  NHNHNHNQLFTHFPHHYNDTFNQINNGVWLDHHAFFNPINGFPIHPNRSFFSFKDSKQMS 121
           +H+H+H ++  +  +H+  T+   +           +     P+ P  +F S    + +S
Sbjct: 203 HHHHHHPKMGFYSSYHHPSTWPSTSPSPLAAPPGAASS----PLDPTAAFLSSPHHRMLS 262

Query: 122 TSPTFFSSSSSSSISYSKISTFTSPPP-------YLHYQLDSGRSSTVARG--------- 181
            +    +   S S +        +  P       + H+ L  G+    A           
Sbjct: 263 AASGRLNGMLSVSDTLRSYGVPGAAAPGVIGGAHHHHHHLHGGQPFVGALASRFMPKLPA 322

Query: 182 -RSMRAPRMRWTSSLHSQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQVF 223
            RSMRAPRMRWTS+LH++FVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ++
Sbjct: 323 KRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 376

[Close]
BLAST of ClCG01G008730 vs. Swiss-Prot
Match: KAN3_ARATH (Probable transcription factor KAN3 OS=Arabidopsis thaliana GN=KAN3 PE=2 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 4.0e-23
Identity = 71/178 (39.89%), Postives = 98/178 (55.06%), Query Frame = 1 

Query: 50  ESSNNRIIIGAHNHNHNHNQLFTHFPHHYNDTFNQINNGVWLDHHAFFNPINGFPIHPNR 109
           +SSNN I       N+   ++ ++  H   ++ +Q    +++       PI G P++ N+
Sbjct: 50  KSSNNLIHTLQFTSNNEATKINSNQEH--KESLDQDLRSIFM-----MRPIRGIPLYQNQ 109

Query: 110 SFFSFKDSKQMSTSPTFFSSSSSSSISYSKISTFTSPPPYL-----HYQLDSGRSSTVAR 169
               +  S   S +P FFS  +    S   I   T+P         H +    +      
Sbjct: 110 VLDHYYYSST-SPNPFFFSEVNGQHASRRLI---TNPNCSFNLHNRHRRQAQPQPPRFTA 169

Query: 170 GRSMRAPRMRWTSSLHSQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQVF 223
            R +RAPRMRWT++LH+ FVHAV+LLGGHERATPKSVLELMDV+DLTLAHVKSHLQ++
Sbjct: 170 KRGVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQMY 216

[Close]
BLAST of ClCG01G008730 vs. Swiss-Prot
Match: KAN4_ARATH (Probable transcription factor KAN4 OS=Arabidopsis thaliana GN=KAN4 PE=1 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 9.0e-23
Identity = 52/64 (81.25%), Postives = 57/64 (89.06%), Query Frame = 1 

Query: 159 SSTVARGRSMRAPRMRWTSSLHSQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSH 218
           SS V   RS+RAPRMRWTS+LH+ FVHAV+LLGGHERATPKSVLELM+VKDLTLAHVKSH
Sbjct: 94  SSMVGLKRSIRAPRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSH 153

Query: 219 LQVF 223
           LQ++
Sbjct: 154 LQMY 157

[Close]
BLAST of ClCG01G008730 vs. TrEMBL
Match: W9RDS4_9ROSA (Putative transcription factor KAN2 OS=Morus notabilis GN=L484_017742 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 3.0e-33
Identity = 101/258 (39.15%), Postives = 134/258 (51.94%), Query Frame = 1 

Query: 10  LQSSSSSSSSSSSSSSTPFLDLSLQISPPSNNST-FTTNTIESSNNRIIIGAHNHNHNH- 69
           L S +S SSS +S +       +   S  + NS  F  +   S+NN  ++  HNHNH+H 
Sbjct: 52  LDSRNSISSSMASKADNMITSSTNNNSNMNMNSNCFDLSLSNSNNNSTLLSHHNHNHHHH 111

Query: 70  ------------------------------NQLFTHFPHHY--NDTFNQINNGVWLDHHA 129
                                         NQL+TH  HH+  N  F+            
Sbjct: 112 HQYHHQQHLQNGNGNSLFHNSTSTTPFPHQNQLYTHHHHHHHQNAAFHHQQQQGLSQELG 171

Query: 130 FFNPINGFPIHPNRSFFSFKDSKQMSTSPTFFSSSSSSSISYSKI------STFTSPPPY 189
           F  PI G P++ N     F  S       T  ++++++S+S S        S F S   +
Sbjct: 172 FLRPIRGIPVYQNPPSSPFPFSPAAQVLDTAAAAAAANSLSSSLANGAAGSSPFQSHHGH 231

Query: 190 LHYQLDSG--RSSTVAR---GRSMRAPRMRWTSSLHSQFVHAVELLGGHERATPKSVLEL 223
            H+Q  +G  RS  ++R    RSMRAPRMRWT++LH++FVHAVELLGGHERATPKSVLEL
Sbjct: 232 HHHQQQAGLMRSRFLSRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLEL 291

[Close]
BLAST of ClCG01G008730 vs. TrEMBL
Match: M5WUE2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006472mg PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 4.1e-30
Identity = 98/257 (38.13%), Postives = 132/257 (51.36%), Query Frame = 1 

Query: 9   NLQSSSSSSSSSSSSSSTPFLDLSLQISPPSNNSTFTTNT--------IESSNNRIII-G 68
           N + +SSSS   SS      +DL        + ++F+++         +E SN R+   G
Sbjct: 18  NSKPTSSSSWRRSSREEQEEVDLGFWRRALDSRTSFSSSMAKPDTGFELEVSNPRVYAHG 77

Query: 69  AHNHNHNHNQ---LFTHFPHHYNDTFN-------------QINNGVWL------------ 128
            H+H+H H+Q      H  HH N   N             Q+N+   L            
Sbjct: 78  LHHHHHQHHQSNISSNHIIHHLNQNGNVFQGFEQNQFSVPQVNHHPLLNVHDQQLQLQSQ 137

Query: 129 ---DHHAFFNPINGFPIHPNR---SFFSFKDSKQMSTSPTFFSSSSSSSISYSKISTFTS 188
              DH  F  PI G P++ N    + F F   K + ++    S +S+S+I+ S    F +
Sbjct: 138 SQSDHLGFLRPIRGIPVYQNPPPPNLFPFSSQKPLDSN----SCTSTSTITSSSSPLFQA 197

Query: 189 PPPYLHYQLDSGRSSTVARGRSMRAPRMRWTSSLHSQFVHAVELLGGHERATPKSVLELM 223
               L  +      S     RSMRAPRMRWT++LH++FVHAVELLGGHERATPKSVLELM
Sbjct: 198 QGGLLRSRF----LSRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELM 257

[Close]
BLAST of ClCG01G008730 vs. TrEMBL
Match: A0A067E560_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g014753mg PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 6.9e-30
Identity = 98/234 (41.88%), Postives = 123/234 (52.56%), Query Frame = 1 

Query: 6   SFINLQSSSSSSSSSSSSSSTPFLDLSLQISPPSNNSTFTTNTIESSNNRIIIGAHNHNH 65
           S  N    SSSS  S S SS   L+   Q     NN+T TTN     N   I  + +H  
Sbjct: 74  SLSNPARVSSSSVLSESLSSNNNLNHHHQFHLLQNNTTTTTNC----NGNNIFHSFHHQQ 133

Query: 66  NHNQLFTHF-----PHHYNDTFNQINNGVWLDHH-AFFNPINGFPI----------HPNR 125
           NH+Q  TH       HH+   ++Q      L     F  PI G P+          H   
Sbjct: 134 NHSQFPTHHHLHQNQHHHPVLYHQPPQQQGLSQELGFLRPIRGIPVYQNPHHHHHHHQAS 193

Query: 126 SFFSFKDSKQMST-SPTFFSSSSSSSISYSKISTFTSPPPYLHYQLDSGRSSTVARGRSM 185
             F F   +Q    SP   S  ++++ S S +++F S    +  +      S     RSM
Sbjct: 194 HAFPFPHHQQQPLDSPPPPSLVANNNTSTSSLNSFQSQQGLMRSRF----MSRFPAKRSM 253

Query: 186 RAPRMRWTSSLHSQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQVF 223
           RAPRMRWT++LH++FVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ++
Sbjct: 254 RAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 299

[Close]
BLAST of ClCG01G008730 vs. TrEMBL
Match: V4SYT4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10001292mg PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 6.9e-30
Identity = 98/234 (41.88%), Postives = 123/234 (52.56%), Query Frame = 1 

Query: 6   SFINLQSSSSSSSSSSSSSSTPFLDLSLQISPPSNNSTFTTNTIESSNNRIIIGAHNHNH 65
           S  N    SSSS  S S SS   L+   Q     NN+T TTN     N   I  + +H  
Sbjct: 74  SLSNPARVSSSSVLSESLSSNNNLNHHHQFHLLQNNTTTTTNC----NGNNIFHSFHHQQ 133

Query: 66  NHNQLFTHF-----PHHYNDTFNQINNGVWLDHH-AFFNPINGFPI----------HPNR 125
           NH+Q  TH       HH+   ++Q      L     F  PI G P+          H   
Sbjct: 134 NHSQFPTHHHLHQNQHHHPVLYHQPPQQQGLSQELGFLRPIRGIPVYQNPHHHHHHHQAS 193

Query: 126 SFFSFKDSKQMST-SPTFFSSSSSSSISYSKISTFTSPPPYLHYQLDSGRSSTVARGRSM 185
             F F   +Q    SP   S  ++++ S S +++F S    +  +      S     RSM
Sbjct: 194 HAFPFPHHQQQPLDSPPPPSLVANNNTSTSSLNSFQSQQGLMRSRF----MSRFPAKRSM 253

Query: 186 RAPRMRWTSSLHSQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQVF 223
           RAPRMRWT++LH++FVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ++
Sbjct: 254 RAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 299

[Close]
BLAST of ClCG01G008730 vs. TrEMBL
Match: A0A067EHE3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g014753mg PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 6.9e-30
Identity = 98/234 (41.88%), Postives = 123/234 (52.56%), Query Frame = 1 

Query: 6   SFINLQSSSSSSSSSSSSSSTPFLDLSLQISPPSNNSTFTTNTIESSNNRIIIGAHNHNH 65
           S  N    SSSS  S S SS   L+   Q     NN+T TTN     N   I  + +H  
Sbjct: 74  SLSNPARVSSSSVLSESLSSNNNLNHHHQFHLLQNNTTTTTNC----NGNNIFHSFHHQQ 133

Query: 66  NHNQLFTHF-----PHHYNDTFNQINNGVWLDHH-AFFNPINGFPI----------HPNR 125
           NH+Q  TH       HH+   ++Q      L     F  PI G P+          H   
Sbjct: 134 NHSQFPTHHHLHQNQHHHPVLYHQPPQQQGLSQELGFLRPIRGIPVYQNPHHHHHHHQAS 193

Query: 126 SFFSFKDSKQMST-SPTFFSSSSSSSISYSKISTFTSPPPYLHYQLDSGRSSTVARGRSM 185
             F F   +Q    SP   S  ++++ S S +++F S    +  +      S     RSM
Sbjct: 194 HAFPFPHHQQQPLDSPPPPSLVANNNTSTSSLNSFQSQQGLMRSRF----MSRFPAKRSM 253

Query: 186 RAPRMRWTSSLHSQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQVF 223
           RAPRMRWT++LH++FVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ++
Sbjct: 254 RAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 299

[Close]
BLAST of ClCG01G008730 vs. TAIR10
Match: AT1G32240.1 (AT1G32240.1 Homeodomain-like superfamily protein)

HSP 1 Score: 127.9 bits (320), Expect = 8.1e-30
Identity = 90/234 (38.46%), Postives = 125/234 (53.42%), Query Frame = 1 

Query: 8   INLQSSSSSSSSSSSSSSTPFLDLSLQISPPSNNSTFTTNTIESSNNRIIIGAHNH---- 67
           ++ ++SS  S+S+S + + PF DLSL     SN S                  H+H    
Sbjct: 49  LDSRTSSLVSNSTSKTINHPFQDLSL-----SNISHHQQQQ-----------QHHHPQLL 108

Query: 68  -NHNHNQLFTHFPHHYNDTFNQINNGVWLDHHAFFNPINGFPI--------HPNRS---F 127
            N N + + T F          +   +  D +    PI G P+        HP+R     
Sbjct: 109 PNCNSSNILTSFQFPTQQQQQHLQGFLAHDLNTHLRPIRGIPLYHNPPPHHHPHRPPPPC 168

Query: 128 FSFKDSKQMSTSPTFFSSSSSSSISYSKISTFTSPPPYLHYQLDSGRSSTVAR---GRSM 187
           F F  S  + +S T   + + ++ S++  S+ ++P  + H+     R+  + R    RSM
Sbjct: 169 FPFDPSSLIPSSSTSSPALTGNNNSFNT-SSVSNPNYHNHHHQTLNRARFMPRFPAKRSM 228

Query: 188 RAPRMRWTSSLHSQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQVF 223
           RAPRMRWT++LH++FVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ++
Sbjct: 229 RAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 265

[Close]
BLAST of ClCG01G008730 vs. TAIR10
Match: AT5G16560.1 (AT5G16560.1 Homeodomain-like superfamily protein)

HSP 1 Score: 122.9 bits (307), Expect = 2.6e-28
Identity = 95/251 (37.85%), Postives = 125/251 (49.80%), Query Frame = 1 

Query: 1   MPNIQSFINLQSSSSSSSSSS-----SSSSTPFLDLSLQISPPS------NNSTFTTNTI 60
           +P+I  + + +SS  SS  SS     + SS   L LS    P +      +  T      
Sbjct: 28  LPDIHQYHHNESSKESSRRSSQLENNNRSSNFELSLSHHNHPTARIFHCPDRRTLNLPHQ 87

Query: 61  ESSNNRIIIGAHNHNHNHNQLFTHFP-------HHYNDTFNQINN------GVWLDHHAF 120
           +  NN II G H           H P       H+ +  F+Q N+      G  +D  + 
Sbjct: 88  QHYNNPIINGVHQRVDESEISNLHRPIRGIPVYHNRSFPFHQQNSSLPSLGGGDMDQISI 147

Query: 121 FNPINGFPIHPNRSFFSFKDSKQMSTSPTFFSSSSSSSISYSKISTFTSPPPYLHYQLDS 180
            N  +G+    N ++ S + S ++   P       +    Y  + +  S  P+ H     
Sbjct: 148 LNSSSGY----NNAYRSLQSSPRLKGVPLHHHHHHNQ---YGVVGSSDSSSPHHHNHHHH 207

Query: 181 G--RSSTVAR---GRSMRAPRMRWTSSLHSQFVHAVELLGGHERATPKSVLELMDVKDLT 223
           G  RS  + +    RSMRAPRMRWTSSLH++FVHAVELLGGHERATPKSVLELMDVKDLT
Sbjct: 208 GMIRSRFLPKMPTKRSMRAPRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLT 267

[Close]
BLAST of ClCG01G008730 vs. TAIR10
Match: AT4G17695.1 (AT4G17695.1 Homeodomain-like superfamily protein)

HSP 1 Score: 109.8 bits (273), Expect = 2.3e-24
Identity = 71/178 (39.89%), Postives = 98/178 (55.06%), Query Frame = 1 

Query: 50  ESSNNRIIIGAHNHNHNHNQLFTHFPHHYNDTFNQINNGVWLDHHAFFNPINGFPIHPNR 109
           +SSNN I       N+   ++ ++  H   ++ +Q    +++       PI G P++ N+
Sbjct: 50  KSSNNLIHTLQFTSNNEATKINSNQEH--KESLDQDLRSIFM-----MRPIRGIPLYQNQ 109

Query: 110 SFFSFKDSKQMSTSPTFFSSSSSSSISYSKISTFTSPPPYL-----HYQLDSGRSSTVAR 169
               +  S   S +P FFS  +    S   I   T+P         H +    +      
Sbjct: 110 VLDHYYYSST-SPNPFFFSEVNGQHASRRLI---TNPNCSFNLHNRHRRQAQPQPPRFTA 169

Query: 170 GRSMRAPRMRWTSSLHSQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQVF 223
            R +RAPRMRWT++LH+ FVHAV+LLGGHERATPKSVLELMDV+DLTLAHVKSHLQ++
Sbjct: 170 KRGVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQMY 216

[Close]
BLAST of ClCG01G008730 vs. TAIR10
Match: AT5G42630.1 (AT5G42630.1 Homeodomain-like superfamily protein)

HSP 1 Score: 108.6 bits (270), Expect = 5.1e-24
Identity = 52/64 (81.25%), Postives = 57/64 (89.06%), Query Frame = 1 

Query: 159 SSTVARGRSMRAPRMRWTSSLHSQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSH 218
           SS V   RS+RAPRMRWTS+LH+ FVHAV+LLGGHERATPKSVLELM+VKDLTLAHVKSH
Sbjct: 94  SSMVGLKRSIRAPRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSH 153

Query: 219 LQVF 223
           LQ++
Sbjct: 154 LQMY 157

[Close]
BLAST of ClCG01G008730 vs. TAIR10
Match: AT2G02060.1 (AT2G02060.1 Homeodomain-like superfamily protein)

HSP 1 Score: 81.3 bits (199), Expect = 8.7e-16
Identity = 36/52 (69.23%), Postives = 42/52 (80.77%), Query Frame = 1 

Query: 171 PRMRWTSSLHSQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQVF 223
           PR+RWT  LH  FVHAVE+LGG  RATPK VL++MDVK LT++HVKSHLQ++
Sbjct: 30  PRLRWTPDLHRCFVHAVEILGGQHRATPKLVLKMMDVKGLTISHVKSHLQMY 81

[Close]
BLAST of ClCG01G008730 vs. NCBI nr
Match: gi|659126425|ref|XP_008463176.1| (PREDICTED: probable transcription factor KAN2 [Cucumis melo])

HSP 1 Score: 288.9 bits (738), Expect = 7.8e-75
Identity = 163/225 (72.44%), Postives = 174/225 (77.33%), Query Frame = 1 

Query: 1   MPNIQSFINLQSSSSSSSSSSSSSSTPFLDLSLQISPPS---NNSTFTTNTIESSNNRII 60
           MPNIQ  IN++SSSSSSSSSSSSSSTPFLDLSLQISPP+   N+STF TNTIE+SN    
Sbjct: 1   MPNIQRVINIESSSSSSSSSSSSSSTPFLDLSLQISPPNSIINHSTFPTNTIETSNG--- 60

Query: 61  IGAHNHNHNHNQLFTHFPHHYNDTFNQINNGVWLDHHAFFNPINGFPIHPNRSFFSFKDS 120
                   + NQLFTH  H+ N + NQINNGV LDHH    PINGFPIHPN S F     
Sbjct: 61  --------STNQLFTH--HYTNKSLNQINNGVSLDHHHAC-PINGFPIHPNPSIFY---P 120

Query: 121 KQMSTSPTFFSSSSSSSISYSKISTFTSPPPYLHYQLDSGRSSTVARGRSMRAPRMRWTS 180
           KQ  TSP F  +SSSSSIS     TFT PPPYLHY LDS R S VARGRSMRAPRMRWTS
Sbjct: 121 KQRLTSPAFSGASSSSSIS-----TFTLPPPYLHYHLDSDRLSAVARGRSMRAPRMRWTS 180

Query: 181 SLHSQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQVF 223
           SLH+QFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ+F
Sbjct: 181 SLHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMF 203

[Close]
BLAST of ClCG01G008730 vs. NCBI nr
Match: gi|703100470|ref|XP_010096928.1| (putative transcription factor KAN2 [Morus notabilis])

HSP 1 Score: 150.2 bits (378), Expect = 4.3e-33
Identity = 101/258 (39.15%), Postives = 134/258 (51.94%), Query Frame = 1 

Query: 10  LQSSSSSSSSSSSSSSTPFLDLSLQISPPSNNST-FTTNTIESSNNRIIIGAHNHNHNH- 69
           L S +S SSS +S +       +   S  + NS  F  +   S+NN  ++  HNHNH+H 
Sbjct: 52  LDSRNSISSSMASKADNMITSSTNNNSNMNMNSNCFDLSLSNSNNNSTLLSHHNHNHHHH 111

Query: 70  ------------------------------NQLFTHFPHHY--NDTFNQINNGVWLDHHA 129
                                         NQL+TH  HH+  N  F+            
Sbjct: 112 HQYHHQQHLQNGNGNSLFHNSTSTTPFPHQNQLYTHHHHHHHQNAAFHHQQQQGLSQELG 171

Query: 130 FFNPINGFPIHPNRSFFSFKDSKQMSTSPTFFSSSSSSSISYSKI------STFTSPPPY 189
           F  PI G P++ N     F  S       T  ++++++S+S S        S F S   +
Sbjct: 172 FLRPIRGIPVYQNPPSSPFPFSPAAQVLDTAAAAAAANSLSSSLANGAAGSSPFQSHHGH 231

Query: 190 LHYQLDSG--RSSTVAR---GRSMRAPRMRWTSSLHSQFVHAVELLGGHERATPKSVLEL 223
            H+Q  +G  RS  ++R    RSMRAPRMRWT++LH++FVHAVELLGGHERATPKSVLEL
Sbjct: 232 HHHQQQAGLMRSRFLSRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLEL 291

[Close]
BLAST of ClCG01G008730 vs. NCBI nr
Match: gi|1009159786|ref|XP_015898003.1| (PREDICTED: probable transcription factor KAN2 isoform X1 [Ziziphus jujuba])

HSP 1 Score: 145.6 bits (366), Expect = 1.1e-31
Identity = 95/230 (41.30%), Postives = 125/230 (54.35%), Query Frame = 1 

Query: 3   NIQSFINLQSSSSSSSSSSSSSSTPFLDLSLQISPPSNNSTFTTNTIESSNNRIIIGAHN 62
           N  +   L  S+   S  S+S+        LQ S  +   +F  N  ++ + ++    HN
Sbjct: 69  NNNTCFELSLSNPRLSDQSNSNHNIHQHHHLQNSNGNLFHSFQQNQYQNHHYQLHNHHHN 128

Query: 63  HNHNHNQLFTHFPHHYNDTFNQINNGVWLDHHAFFNPINGFPIHPNRSF----FSFKDSK 122
           HNHNH+QLF    HH++    Q           F  PI G P++ N       F F    
Sbjct: 129 HNHNHHQLF----HHHHQQQQQQQQAGLTQELGFLRPIRGIPVYQNPPHPPPPFPFSAQL 188

Query: 123 QMSTSPTFFSSSSSSSISYSKISTFTSPPPY-----LHYQLDSGRS-STVARGRSMRAPR 182
            + TS    S + +++ + + IST  S P +      H  L   R  S     RSMRAPR
Sbjct: 189 PLDTSCLPSSINMNANNNSTTISTTGSNPLFQSSSATHQGLMRSRFLSRFPAKRSMRAPR 248

Query: 183 MRWTSSLHSQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQVF 223
           MRWT++LH++FVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ++
Sbjct: 249 MRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 294

[Close]
BLAST of ClCG01G008730 vs. NCBI nr
Match: gi|1009159788|ref|XP_015898004.1| (PREDICTED: probable transcription factor KAN2 isoform X2 [Ziziphus jujuba])

HSP 1 Score: 145.6 bits (366), Expect = 1.1e-31
Identity = 95/230 (41.30%), Postives = 125/230 (54.35%), Query Frame = 1 

Query: 3   NIQSFINLQSSSSSSSSSSSSSSTPFLDLSLQISPPSNNSTFTTNTIESSNNRIIIGAHN 62
           N  +   L  S+   S  S+S+        LQ S  +   +F  N  ++ + ++    HN
Sbjct: 69  NNNTCFELSLSNPRLSDQSNSNHNIHQHHHLQNSNGNLFHSFQQNQYQNHHYQLHNHHHN 128

Query: 63  HNHNHNQLFTHFPHHYNDTFNQINNGVWLDHHAFFNPINGFPIHPNRSF----FSFKDSK 122
           HNHNH+QLF    HH++    Q           F  PI G P++ N       F F    
Sbjct: 129 HNHNHHQLF----HHHHQQQQQQQQAGLTQELGFLRPIRGIPVYQNPPHPPPPFPFSAQL 188

Query: 123 QMSTSPTFFSSSSSSSISYSKISTFTSPPPY-----LHYQLDSGRS-STVARGRSMRAPR 182
            + TS    S + +++ + + IST  S P +      H  L   R  S     RSMRAPR
Sbjct: 189 PLDTSCLPSSINMNANNNSTTISTTGSNPLFQSSSATHQGLMRSRFLSRFPAKRSMRAPR 248

Query: 183 MRWTSSLHSQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQVF 223
           MRWT++LH++FVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ++
Sbjct: 249 MRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 294

[Close]
BLAST of ClCG01G008730 vs. NCBI nr
Match: gi|1009159790|ref|XP_015898005.1| (PREDICTED: probable transcription factor KAN2 isoform X3 [Ziziphus jujuba])

HSP 1 Score: 145.6 bits (366), Expect = 1.1e-31
Identity = 95/230 (41.30%), Postives = 125/230 (54.35%), Query Frame = 1 

Query: 3   NIQSFINLQSSSSSSSSSSSSSSTPFLDLSLQISPPSNNSTFTTNTIESSNNRIIIGAHN 62
           N  +   L  S+   S  S+S+        LQ S  +   +F  N  ++ + ++    HN
Sbjct: 69  NNNTCFELSLSNPRLSDQSNSNHNIHQHHHLQNSNGNLFHSFQQNQYQNHHYQLHNHHHN 128

Query: 63  HNHNHNQLFTHFPHHYNDTFNQINNGVWLDHHAFFNPINGFPIHPNRSF----FSFKDSK 122
           HNHNH+QLF    HH++    Q           F  PI G P++ N       F F    
Sbjct: 129 HNHNHHQLF----HHHHQQQQQQQQAGLTQELGFLRPIRGIPVYQNPPHPPPPFPFSAQL 188

Query: 123 QMSTSPTFFSSSSSSSISYSKISTFTSPPPY-----LHYQLDSGRS-STVARGRSMRAPR 182
            + TS    S + +++ + + IST  S P +      H  L   R  S     RSMRAPR
Sbjct: 189 PLDTSCLPSSINMNANNNSTTISTTGSNPLFQSSSATHQGLMRSRFLSRFPAKRSMRAPR 248

Query: 183 MRWTSSLHSQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQVF 223
           MRWT++LH++FVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ++
Sbjct: 249 MRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 294

The following BLAST results are available for this feature:
BLAST of ClCG01G008730 vs. Swiss-Prot
Match NameE-valueIdentityDescription
KAN2_ARATH1.4e-2838.46Probable transcription factor KAN2 OS=Arabidopsis thaliana GN=KAN2 PE=2 SV=1[more]
KAN1_ARATH4.6e-2737.85Transcription repressor KAN1 OS=Arabidopsis thaliana GN=KAN1 PE=1 SV=1[more]
ROLL9_ORYSJ1.1e-2338.76Probable transcription factor RL9 OS=Oryza sativa subsp. japonica GN=RL9 PE=2 SV... [more]
KAN3_ARATH4.0e-2339.89Probable transcription factor KAN3 OS=Arabidopsis thaliana GN=KAN3 PE=2 SV=1[more]
KAN4_ARATH9.0e-2381.25Probable transcription factor KAN4 OS=Arabidopsis thaliana GN=KAN4 PE=1 SV=1[more]
BLAST of ClCG01G008730 vs. TrEMBL
Match NameE-valueIdentityDescription
W9RDS4_9ROSA3.0e-3339.15Putative transcription factor KAN2 OS=Morus notabilis GN=L484_017742 PE=4 SV=1[more]
M5WUE2_PRUPE4.1e-3038.13Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006472mg PE=4 SV=1[more]
A0A067E560_CITSI6.9e-3041.88Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g014753mg PE=4 SV=1[more]
V4SYT4_9ROSI6.9e-3041.88Uncharacterized protein OS=Citrus clementina GN=CICLE_v10001292mg PE=4 SV=1[more]
A0A067EHE3_CITSI6.9e-3041.88Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g014753mg PE=4 SV=1[more]
BLAST of ClCG01G008730 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G32240.18.1e-3038.46 Homeodomain-like superfamily protein[more]
AT5G16560.12.6e-2837.85 Homeodomain-like superfamily protein[more]
AT4G17695.12.3e-2439.89 Homeodomain-like superfamily protein[more]
AT5G42630.15.1e-2481.25 Homeodomain-like superfamily protein[more]
AT2G02060.18.7e-1669.23 Homeodomain-like superfamily protein[more]
BLAST of ClCG01G008730 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659126425|ref|XP_008463176.1|7.8e-7572.44PREDICTED: probable transcription factor KAN2 [Cucumis melo][more]
gi|703100470|ref|XP_010096928.1|4.3e-3339.15putative transcription factor KAN2 [Morus notabilis][more]
gi|1009159786|ref|XP_015898003.1|1.1e-3141.30PREDICTED: probable transcription factor KAN2 isoform X1 [Ziziphus jujuba][more]
gi|1009159788|ref|XP_015898004.1|1.1e-3141.30PREDICTED: probable transcription factor KAN2 isoform X2 [Ziziphus jujuba][more]
gi|1009159790|ref|XP_015898005.1|1.1e-3141.30PREDICTED: probable transcription factor KAN2 isoform X3 [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001005SANT/Myb
IPR006447Myb_dom_plants
IPR009057Homeobox-like_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0009845 seed germination
biological_process GO:0010162 seed dormancy process
biological_process GO:0009737 response to abscisic acid
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0010051 xylem and phloem pattern formation
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0009956 radial pattern formation
biological_process GO:0009944 polarity specification of adaxial/abaxial axis
biological_process GO:0048481 plant ovule development
biological_process GO:0009887 animal organ morphogenesis
biological_process GO:0010158 abaxial cell fate specification
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
cellular_component GO:0000785 chromatin
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005739 mitochondrion
cellular_component GO:0009536 plastid
molecular_function GO:0003677 DNA binding
molecular_function GO:0003682 chromatin binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG01G008730.1ClCG01G008730.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001005SANT/Myb domainPFAMPF00249Myb_DNA-bindingcoord: 172..220
score: 5.
IPR006447Myb domain, plantsTIGRFAMsTIGR01557TIGR01557coord: 171..223
score: 4.0
IPR009057Homeodomain-likeGENE3DG3DSA:1.10.10.60coord: 169..222
score: 1.8
IPR009057Homeodomain-likeunknownSSF46689Homeodomain-likecoord: 168..224
score: 1.34
NoneNo IPR availablePANTHERPTHR31496FAMILY NOT NAMEDcoord: 14..220
score: 4.0
NoneNo IPR availablePANTHERPTHR31496:SF3SUBFAMILY NOT NAMEDcoord: 14..220
score: 4.0