Cp4.1LG01g19850 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g19850
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Transcription factor, putative
Location	Cp4.1LG01 : 16933603 .. 16934354 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TATTACTCTCTTTGCCTTTCCCCTTTATTCCCTTCTTTATTTTCTTCTCTCTTCTCTCTCTTCTGCTCTATATCTGTGCATGTCTCTCAAGAACAACAAGAGCACCAAGAACAACAACACCAATCAAACCCTAAACTCATATCTTCTCTTTGTTTTTCAATCATTTCTTCCTTTTTTTTTTGAAAAAAAAACATGCCCAACATTCAAAGCTTTATAAATATTCAATCTTCATCATCTTCATCATCTTCATCTTCATCTTCTTCTTCTTCATTTCTTGATCTTGATCTTTCCCTTCAAATTTCTCCTCCTAATAATGGAGTTGGGGCTGTTCATACTCATAAATTCAATCAAATCACTAATGGGGTTTGGCTTTTCAATCATCATCATAATAATAATCATCATCATCATTCCTTCGCTTCGCCCCCGCCGTTTCTTCGGAGCCAATTGGATCCGGGTCGGTCGCCGATGGCAAGAGGGCGGTGCATAAGGGCGCCGAGGATGCGGTGGACGAGTACTCTCCATGCTCAGTTTGTTCATGCTGTTGAGCTTCTTGGTGGCCATGAAAGTAACAATTTTGAAGCTTTATTTTCATTTACTTTTTTTAGATTCAACGTTCTAAAAGTTTGGTTTGTTTGTGTTGTTTTTCAGGAGCTACACCTAAATCTGTTCTAGAGCTTATGGATGTCAAGGATCTTACATTGGCTCATGTCAAAAGCCATTTACAGGTTTTTTTAAAAAATATTACGTTATAA

mRNA sequence

TATTACTCTCTTTGCCTTTCCCCTTTATTCCCTTCTTTATTTTCTTCTCTCTTCTCTCTCTTCTGCTCTATATCTGTGCATGTCTCTCAAGAACAACAAGAGCACCAAGAACAACAACACCAATCAAACCCTAAACTCATATCTTCTCTTTGTTTTTCAATCATTTCTTCCTTTTTTTTTTGAAAAAAAAACATGCCCAACATTCAAAGCTTTATAAATATTCAATCTTCATCATCTTCATCATCTTCATCTTCATCTTCTTCTTCTTCATTTCTTGATCTTGATCTTTCCCTTCAAATTTCTCCTCCTAATAATGGAGTTGGGGCTGTTCATACTCATAAATTCAATCAAATCACTAATGGGGTTTGGCTTTTCAATCATCATCATAATAATAATCATCATCATCATTCCTTCGCTTCGCCCCCGCCGTTTCTTCGGAGCCAATTGGATCCGGGTCGGTCGCCGATGGCAAGAGGGCGGTGCATAAGGGCGCCGAGGATGCGGTGGACGAGTACTCTCCATGCTCAGTTTGTTCATGCTGTTGAGCTTCTTGGTGGCCATGAAAGAGCTACACCTAAATCTGTTCTAGAGCTTATGGATGTCAAGGATCTTACATTGGCTCATGTCAAAAGCCATTTACAGGTTTTTTTAAAAAATATTACGTTATAA

Coding sequence (CDS)

ATGCCCAACATTCAAAGCTTTATAAATATTCAATCTTCATCATCTTCATCATCTTCATCTTCATCTTCTTCTTCTTCATTTCTTGATCTTGATCTTTCCCTTCAAATTTCTCCTCCTAATAATGGAGTTGGGGCTGTTCATACTCATAAATTCAATCAAATCACTAATGGGGTTTGGCTTTTCAATCATCATCATAATAATAATCATCATCATCATTCCTTCGCTTCGCCCCCGCCGTTTCTTCGGAGCCAATTGGATCCGGGTCGGTCGCCGATGGCAAGAGGGCGGTGCATAAGGGCGCCGAGGATGCGGTGGACGAGTACTCTCCATGCTCAGTTTGTTCATGCTGTTGAGCTTCTTGGTGGCCATGAAAGAGCTACACCTAAATCTGTTCTAGAGCTTATGGATGTCAAGGATCTTACATTGGCTCATGTCAAAAGCCATTTACAGGTTTTTTTAAAAAATATTACGTTATAA

Protein sequence

MPNIQSFINIQSSSSSSSSSSSSSSSFLDLDLSLQISPPNNGVGAVHTHKFNQITNGVWLFNHHHNNNHHHHSFASPPPFLRSQLDPGRSPMARGRCIRAPRMRWTSTLHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQVFLKNITL

Homology

[Close]

BLAST of Cp4.1LG01g19850 vs. Swiss-Prot
Match: KAN1_ARATH (Transcription repressor KAN1 OS=Arabidopsis thaliana GN=KAN1 PE=1 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.4e-27
Identity = 76/132 (57.58%), Postives = 89/132 (67.42%), Query Frame = 1


Query: 22  SSSSSFLDLDLSLQISPPNNGVGAVHTHKFNQI-TNGVWLFNHHHNNNHHHHSFASPPPF 81
           +SSS + +   SLQ SP   GV   H H  NQ    G    +  H++NHHHH        
Sbjct: 149 NSSSGYNNAYRSLQSSPRLKGVPLHHHHHHNQYGVVGSSDSSSPHHHNHHHHGM------ 208

Query: 82  LRSQLDPGRSPMARGRCIRAPRMRWTSTLHAQFVHAVELLGGHERATPKSVLELMDVKDL 141
           +RS+  P    M   R +RAPRMRWTS+LHA+FVHAVELLGGHERATPKSVLELMDVKDL
Sbjct: 209 IRSRFLP---KMPTKRSMRAPRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDL 268

Query: 142 TLAHVKSHLQVF 153
           TLAHVKSHLQ++
Sbjct: 269 TLAHVKSHLQMY 271

[Close]

BLAST of Cp4.1LG01g19850 vs. Swiss-Prot
Match: ROLL9_ORYSJ (Probable transcription factor RL9 OS=Oryza sativa subsp. japonica GN=RL9 PE=2 SV=2)

HSP 1 Score: 118.6 bits (296), Expect = 6.1e-26
Identity = 58/85 (68.24%), Postives = 66/85 (77.65%), Query Frame = 1


Query: 68  NHHHHSFASPPPFLRSQLDPGRSPMARGRCIRAPRMRWTSTLHAQFVHAVELLGGHERAT 127
           +HHHH      PF+ +        +   R +RAPRMRWTSTLHA+FVHAVELLGGHERAT
Sbjct: 292 HHHHHHLHGGQPFVGALASRFMPKLPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERAT 351

Query: 128 PKSVLELMDVKDLTLAHVKSHLQVF 153
           PKSVLELMDVKDLTLAHVKSHLQ++
Sbjct: 352 PKSVLELMDVKDLTLAHVKSHLQMY 376

[Close]

BLAST of Cp4.1LG01g19850 vs. Swiss-Prot
Match: KAN2_ARATH (Probable transcription factor KAN2 OS=Arabidopsis thaliana GN=KAN2 PE=2 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 6.3e-23
Identity = 65/106 (61.32%), Postives = 77/106 (72.64%), Query Frame = 1


Query: 47  HTHKFNQITNGVWLFNHHHNNNHHHHSFASPPPFLRSQLDPGRSPMARGRCIRAPRMRWT 106
           + + FN  T+ V   N+H   NHHH +        R++  P R P  R   +RAPRMRWT
Sbjct: 174 NNNSFN--TSSVSNPNYH---NHHHQTLN------RARFMP-RFPAKRS--MRAPRMRWT 233

Query: 107 STLHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQVF 153
           +TLHA+FVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ++
Sbjct: 234 TTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 265

[Close]

BLAST of Cp4.1LG01g19850 vs. Swiss-Prot
Match: KAN3_ARATH (Probable transcription factor KAN3 OS=Arabidopsis thaliana GN=KAN3 PE=2 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.1e-22
Identity = 60/99 (60.61%), Postives = 67/99 (67.68%), Query Frame = 1


Query: 54  ITNGVWLFNHHHNNNHHHHSFASPPPFLRSQLDPGRSPMARGRCIRAPRMRWTSTLHAQF 113
           ITN    FN H  N H   +   PP F               R +RAPRMRWT+TLHA F
Sbjct: 132 ITNPNCSFNLH--NRHRRQAQPQPPRFTAK------------RGVRAPRMRWTTTLHAHF 191

Query: 114 VHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQVF 153
           VHAV+LLGGHERATPKSVLELMDV+DLTLAHVKSHLQ++
Sbjct: 192 VHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQMY 216

[Close]

BLAST of Cp4.1LG01g19850 vs. Swiss-Prot
Match: KAN4_ARATH (Probable transcription factor KAN4 OS=Arabidopsis thaliana GN=KAN4 PE=1 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.0e-21
Identity = 72/136 (52.94%), Postives = 83/136 (61.03%), Query Frame = 1


Query: 17  SSSSSSSSSSFLDLDLSLQISPPNNGVGAVHTHKFNQITNGVWLFNHHHNNNHHHHSFAS 76
           SS+SS S SS  DL      S  NN         FN+    +  F+HHH    +      
Sbjct: 40  SSTSSDSGSSLSDL------SHENNF--------FNKPLLSLG-FDHHHQRRSN---MFQ 99

Query: 77  PPPFLRSQLDPGRSPMARGRCIRAPRMRWTSTLHAQFVHAVELLGGHERATPKSVLELMD 136
           P  + R       S +   R IRAPRMRWTSTLHA FVHAV+LLGGHERATPKSVLELM+
Sbjct: 100 PQIYGRDFKRSSSSMVGLKRSIRAPRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMN 157

Query: 137 VKDLTLAHVKSHLQVF 153
           VKDLTLAHVKSHLQ++
Sbjct: 160 VKDLTLAHVKSHLQMY 157

[Close]

BLAST of Cp4.1LG01g19850 vs. TrEMBL
Match: A0A087G7M2_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA8G173500 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.1e-26
Identity = 73/124 (58.87%), Postives = 85/124 (68.55%), Query Frame = 1


Query: 33  SLQISPPNNGVGAVHTHKFNQI----TNGVWLFNHHHNNNHHHHSFASPPPFLRSQLDPG 92
           SLQ SP   GV   H H+        ++     +HHHN+NHHHH        +RS+  P 
Sbjct: 178 SLQTSPRLKGVPLHHHHQHTHYGVVGSSDSSSPHHHHNHNHHHHHHG----MIRSRFLP- 237

Query: 93  RSPMARGRCIRAPRMRWTSTLHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSH 152
              M   R +RAPRMRWTS+LHA+FVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSH
Sbjct: 238 --KMPTKRSMRAPRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSH 294

[Close]

BLAST of Cp4.1LG01g19850 vs. TrEMBL
Match: A0A078CRM1_BRANA (BnaA03g06110D protein OS=Brassica napus GN=BnaA03g06110D PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.6e-25
Identity = 73/131 (55.73%), Postives = 88/131 (67.18%), Query Frame = 1


Query: 22  SSSSSFLDLDLSLQISPPNNGVGAVHTHKFNQITNGVWLFNHHHNNNHHHHSFASPPPFL 81
           +SSS + +   S Q SP   GV   H + +  + +    + HHHN  HHHH        +
Sbjct: 142 NSSSGYNNAYRSFQSSPRLKGVPMHHHNHYGAVGSSDSSYPHHHN--HHHHGM------V 201

Query: 82  RSQLDPGRSPMARGRCIRAPRMRWTSTLHAQFVHAVELLGGHERATPKSVLELMDVKDLT 141
           RS+  P    M   R +RAPRMRWTS+LHA+FVHAVELLGGHERATPKSVLELMDVKDLT
Sbjct: 202 RSRFLP---KMPTKRSMRAPRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLT 261

Query: 142 LAHVKSHLQVF 153
           LAHVKSHLQ++
Sbjct: 262 LAHVKSHLQMY 261

[Close]

BLAST of Cp4.1LG01g19850 vs. TrEMBL
Match: A0A078C165_BRANA (BnaC03g07850D protein OS=Brassica napus GN=BnaC03g07850D PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 2.1e-25
Identity = 73/131 (55.73%), Postives = 88/131 (67.18%), Query Frame = 1


Query: 22  SSSSSFLDLDLSLQISPPNNGVGAVHTHKFNQITNGVWLFNHHHNNNHHHHSFASPPPFL 81
           +SSS + +   S Q SP   GV   H + +  + +    + HHHN  HHHH        +
Sbjct: 142 NSSSGYNNAYRSFQSSPRLKGVPMHHHNHYGVVGSSDSSYPHHHN--HHHHGM------V 201

Query: 82  RSQLDPGRSPMARGRCIRAPRMRWTSTLHAQFVHAVELLGGHERATPKSVLELMDVKDLT 141
           RS+  P    M   R +RAPRMRWTS+LHA+FVHAVELLGGHERATPKSVLELMDVKDLT
Sbjct: 202 RSRFLP---KMPTKRSMRAPRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLT 261

Query: 142 LAHVKSHLQVF 153
           LAHVKSHLQ++
Sbjct: 262 LAHVKSHLQMY 261

[Close]

BLAST of Cp4.1LG01g19850 vs. TrEMBL
Match: M4E467_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 6.1e-25
Identity = 76/136 (55.88%), Postives = 90/136 (66.18%), Query Frame = 1


Query: 17  SSSSSSSSSSFLDLDLSLQISPPNNGVGAVHTHKFNQITNGVWLFNHHHNNNHHHHSFAS 76
           SSS  +SSS + +   SLQ SP   GV   H + +  + +      HHH   HHHH    
Sbjct: 146 SSSILNSSSGYNNAYRSLQSSPRLKGVPVHHHNHYGVVGSSDSSSPHHH---HHHHGM-- 205

Query: 77  PPPFLRSQLDPGRSPMARGRCIRAPRMRWTSTLHAQFVHAVELLGGHERATPKSVLELMD 136
               +RS+  P    M   R +RAPRMRWTS+LHA+FVHAVELLGGHERATPKSVLELMD
Sbjct: 206 ----IRSRFLP---KMPTKRSMRAPRMRWTSSLHARFVHAVELLGGHERATPKSVLELMD 265

Query: 137 VKDLTLAHVKSHLQVF 153
           VKDLTLAHVKSHLQ++
Sbjct: 266 VKDLTLAHVKSHLQMY 269

[Close]

BLAST of Cp4.1LG01g19850 vs. TrEMBL
Match: A0A0D3B1H9_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.0e-24
Identity = 72/131 (54.96%), Postives = 87/131 (66.41%), Query Frame = 1


Query: 22  SSSSSFLDLDLSLQISPPNNGVGAVHTHKFNQITNGVWLFNHHHNNNHHHHSFASPPPFL 81
           +SSS + +     Q SP   GV   H + +  + +    + HHHN  HHHH        +
Sbjct: 142 NSSSGYNNAYRLFQSSPRLKGVPMHHHNHYGVVGSSDSSYPHHHN--HHHHGM------V 201

Query: 82  RSQLDPGRSPMARGRCIRAPRMRWTSTLHAQFVHAVELLGGHERATPKSVLELMDVKDLT 141
           RS+  P    M   R +RAPRMRWTS+LHA+FVHAVELLGGHERATPKSVLELMDVKDLT
Sbjct: 202 RSRFLP---KMPTKRSMRAPRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLT 261

Query: 142 LAHVKSHLQVF 153
           LAHVKSHLQ++
Sbjct: 262 LAHVKSHLQMY 261

[Close]

BLAST of Cp4.1LG01g19850 vs. TAIR10
Match: AT5G16560.1 (AT5G16560.1 Homeodomain-like superfamily protein)

HSP 1 Score: 124.0 bits (310), Expect = 8.1e-29
Identity = 76/132 (57.58%), Postives = 89/132 (67.42%), Query Frame = 1


Query: 22  SSSSSFLDLDLSLQISPPNNGVGAVHTHKFNQI-TNGVWLFNHHHNNNHHHHSFASPPPF 81
           +SSS + +   SLQ SP   GV   H H  NQ    G    +  H++NHHHH        
Sbjct: 149 NSSSGYNNAYRSLQSSPRLKGVPLHHHHHHNQYGVVGSSDSSSPHHHNHHHHGM------ 208

Query: 82  LRSQLDPGRSPMARGRCIRAPRMRWTSTLHAQFVHAVELLGGHERATPKSVLELMDVKDL 141
           +RS+  P    M   R +RAPRMRWTS+LHA+FVHAVELLGGHERATPKSVLELMDVKDL
Sbjct: 209 IRSRFLP---KMPTKRSMRAPRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDL 268

Query: 142 TLAHVKSHLQVF 153
           TLAHVKSHLQ++
Sbjct: 269 TLAHVKSHLQMY 271

[Close]

BLAST of Cp4.1LG01g19850 vs. TAIR10
Match: AT1G32240.1 (AT1G32240.1 Homeodomain-like superfamily protein)

HSP 1 Score: 108.6 bits (270), Expect = 3.5e-24
Identity = 65/106 (61.32%), Postives = 77/106 (72.64%), Query Frame = 1


Query: 47  HTHKFNQITNGVWLFNHHHNNNHHHHSFASPPPFLRSQLDPGRSPMARGRCIRAPRMRWT 106
           + + FN  T+ V   N+H   NHHH +        R++  P R P  R   +RAPRMRWT
Sbjct: 174 NNNSFN--TSSVSNPNYH---NHHHQTLN------RARFMP-RFPAKRS--MRAPRMRWT 233

Query: 107 STLHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQVF 153
           +TLHA+FVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ++
Sbjct: 234 TTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 265

[Close]

BLAST of Cp4.1LG01g19850 vs. TAIR10
Match: AT4G17695.1 (AT4G17695.1 Homeodomain-like superfamily protein)

HSP 1 Score: 107.8 bits (268), Expect = 6.0e-24
Identity = 60/99 (60.61%), Postives = 67/99 (67.68%), Query Frame = 1


Query: 54  ITNGVWLFNHHHNNNHHHHSFASPPPFLRSQLDPGRSPMARGRCIRAPRMRWTSTLHAQF 113
           ITN    FN H  N H   +   PP F               R +RAPRMRWT+TLHA F
Sbjct: 132 ITNPNCSFNLH--NRHRRQAQPQPPRFTAK------------RGVRAPRMRWTTTLHAHF 191

Query: 114 VHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQVF 153
           VHAV+LLGGHERATPKSVLELMDV+DLTLAHVKSHLQ++
Sbjct: 192 VHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQMY 216

[Close]

BLAST of Cp4.1LG01g19850 vs. TAIR10
Match: AT5G42630.1 (AT5G42630.1 Homeodomain-like superfamily protein)

HSP 1 Score: 103.6 bits (257), Expect = 1.1e-22
Identity = 72/136 (52.94%), Postives = 83/136 (61.03%), Query Frame = 1


Query: 17  SSSSSSSSSSFLDLDLSLQISPPNNGVGAVHTHKFNQITNGVWLFNHHHNNNHHHHSFAS 76
           SS+SS S SS  DL      S  NN         FN+    +  F+HHH    +      
Sbjct: 40  SSTSSDSGSSLSDL------SHENNF--------FNKPLLSLG-FDHHHQRRSN---MFQ 99

Query: 77  PPPFLRSQLDPGRSPMARGRCIRAPRMRWTSTLHAQFVHAVELLGGHERATPKSVLELMD 136
           P  + R       S +   R IRAPRMRWTSTLHA FVHAV+LLGGHERATPKSVLELM+
Sbjct: 100 PQIYGRDFKRSSSSMVGLKRSIRAPRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMN 157

Query: 137 VKDLTLAHVKSHLQVF 153
           VKDLTLAHVKSHLQ++
Sbjct: 160 VKDLTLAHVKSHLQMY 157

[Close]

BLAST of Cp4.1LG01g19850 vs. TAIR10
Match: AT2G02060.1 (AT2G02060.1 Homeodomain-like superfamily protein)

HSP 1 Score: 81.3 bits (199), Expect = 6.0e-16
Identity = 36/52 (69.23%), Postives = 44/52 (84.62%), Query Frame = 1


Query: 101 PRMRWTSTLHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQVF 153
           PR+RWT  LH  FVHAVE+LGG  RATPK VL++MDVK LT++HVKSHLQ++
Sbjct: 30  PRLRWTPDLHRCFVHAVEILGGQHRATPKLVLKMMDVKGLTISHVKSHLQMY 81

[Close]

BLAST of Cp4.1LG01g19850 vs. NCBI nr
Match: gi|659126425|ref|XP_008463176.1| (PREDICTED: probable transcription factor KAN2 [Cucumis melo])

HSP 1 Score: 157.5 bits (397), Expect = 1.9e-35
Identity = 111/204 (54.41%), Postives = 124/204 (60.78%), Query Frame = 1


Query: 1   MPNIQSFINIQSSSSSSSSSSSSSSSFLDLDLSLQISPPNN-----------------GV 60
           MPNIQ  INI+SSSSSSSSSSSSSS+   LDLSLQISPPN+                   
Sbjct: 1   MPNIQRVINIESSSSSSSSSSSSSSTPF-LDLSLQISPPNSIINHSTFPTNTIETSNGST 60

Query: 61  GAVHTHKF-----NQITNGVWLFNHH---------HNNNHHHH----------------- 120
             + TH +     NQI NGV L +HH         H N    +                 
Sbjct: 61  NQLFTHHYTNKSLNQINNGVSLDHHHACPINGFPIHPNPSIFYPKQRLTSPAFSGASSSS 120

Query: 121 ---SFASPPPFLRSQLDPGR-SPMARGRCIRAPRMRWTSTLHAQFVHAVELLGGHERATP 153
              +F  PPP+L   LD  R S +ARGR +RAPRMRWTS+LHAQFVHAVELLGGHERATP
Sbjct: 121 SISTFTLPPPYLHYHLDSDRLSAVARGRSMRAPRMRWTSSLHAQFVHAVELLGGHERATP 180

[Close]

BLAST of Cp4.1LG01g19850 vs. NCBI nr
Match: gi|674233109|gb|KFK25874.1| (hypothetical protein AALP_AA8G173500 [Arabis alpina])

HSP 1 Score: 127.9 bits (320), Expect = 1.6e-26
Identity = 73/124 (58.87%), Postives = 85/124 (68.55%), Query Frame = 1


Query: 33  SLQISPPNNGVGAVHTHKFNQI----TNGVWLFNHHHNNNHHHHSFASPPPFLRSQLDPG 92
           SLQ SP   GV   H H+        ++     +HHHN+NHHHH        +RS+  P 
Sbjct: 178 SLQTSPRLKGVPLHHHHQHTHYGVVGSSDSSSPHHHHNHNHHHHHHG----MIRSRFLP- 237

Query: 93  RSPMARGRCIRAPRMRWTSTLHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSH 152
              M   R +RAPRMRWTS+LHA+FVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSH
Sbjct: 238 --KMPTKRSMRAPRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSH 294

[Close]

BLAST of Cp4.1LG01g19850 vs. NCBI nr
Match: gi|729463219|ref|XP_010525638.1| (PREDICTED: probable transcription factor KAN4 [Tarenaya hassleriana])

HSP 1 Score: 127.1 bits (318), Expect = 2.7e-26
Identity = 79/149 (53.02%), Postives = 92/149 (61.74%), Query Frame = 1


Query: 31  DLSLQISPPNNGVG-----------AVHTHKFNQITNGVWLF---------NHHHNNNHH 90
           DLSLQISPPN+ VG            +       + N   L          +HHH+++HH
Sbjct: 17  DLSLQISPPNHSVGERISTSSDSGSTLSDLSHENVNNNNTLLGVGFDHHRHHHHHHHHHH 76

Query: 91  HHSFASPPP------FLRSQLDPGRSPMAR-GRCIRAPRMRWTSTLHAQFVHAVELLGGH 150
           HH+     P      F RS     R+PM    R IRAPRMRWTSTLHA FVHAV+LLGGH
Sbjct: 77  HHNRHIYQPQIYGRDFKRSS-SSSRAPMVGVKRSIRAPRMRWTSTLHAHFVHAVQLLGGH 136

Query: 151 ERATPKSVLELMDVKDLTLAHVKSHLQVF 153
           ERATPKSVLELM+VKDLTLAHVKSHLQ++
Sbjct: 137 ERATPKSVLELMNVKDLTLAHVKSHLQMY 164

[Close]

BLAST of Cp4.1LG01g19850 vs. NCBI nr
Match: gi|727642417|ref|XP_010492568.1| (PREDICTED: transcription repressor KAN1 [Camelina sativa])

HSP 1 Score: 126.3 bits (316), Expect = 4.6e-26
Identity = 76/133 (57.14%), Postives = 89/133 (66.92%), Query Frame = 1


Query: 22  SSSSSFLDLDLSLQISPPNNGVGAVHTHKFNQ--ITNGVWLFNHHHNNNHHHHSFASPPP 81
           +SSS + +   SLQ SP   GV   H H  N   I       + HH+N+HHHH       
Sbjct: 165 NSSSGYNNAYRSLQSSPRLKGVPLHHHHHHNHYGIVGSSDSSSPHHHNHHHHHGM----- 224

Query: 82  FLRSQLDPGRSPMARGRCIRAPRMRWTSTLHAQFVHAVELLGGHERATPKSVLELMDVKD 141
            +RS+  P    M   R +RAPRMRWTS+LHA+FVHAVELLGGHERATPKSVLELMDVKD
Sbjct: 225 -IRSRFLP---KMPTKRSMRAPRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKD 284

Query: 142 LTLAHVKSHLQVF 153
           LTLAHVKSHLQ++
Sbjct: 285 LTLAHVKSHLQMY 288

[Close]

BLAST of Cp4.1LG01g19850 vs. NCBI nr
Match: gi|1009135011|ref|XP_015884755.1| (PREDICTED: probable transcription factor KAN4 isoform X1 [Ziziphus jujuba])

HSP 1 Score: 124.8 bits (312), Expect = 1.4e-25
Identity = 61/91 (67.03%), Postives = 73/91 (80.22%), Query Frame = 1


Query: 62  NHHHNNNHHHHSFASPPPFLRSQLDPGRSPMARGRCIRAPRMRWTSTLHAQFVHAVELLG 121
           +HHH+++HHHH    P  + R     GR+  +  R IRAPRMRWT+TLHA FVHAV+LLG
Sbjct: 116 HHHHHHHHHHHQLHQPQIYGRDFKRNGRAISSVKRSIRAPRMRWTTTLHAHFVHAVQLLG 175

Query: 122 GHERATPKSVLELMDVKDLTLAHVKSHLQVF 153
           GHERATPKSVLELM+VKDLTLAHVKSHLQ++
Sbjct: 176 GHERATPKSVLELMNVKDLTLAHVKSHLQMY 206

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g19850 vs. Swiss-Prot


Match Name	E-value	Identity	Description
KAN1_ARATH	1.4e-27	57.58	Transcription repressor KAN1 OS=Arabidopsis thaliana GN=KAN1 PE=1 SV=1	[more]
ROLL9_ORYSJ	6.1e-26	68.24	Probable transcription factor RL9 OS=Oryza sativa subsp. japonica GN=RL9 PE=2 SV...	[more]
KAN2_ARATH	6.3e-23	61.32	Probable transcription factor KAN2 OS=Arabidopsis thaliana GN=KAN2 PE=2 SV=1	[more]
KAN3_ARATH	1.1e-22	60.61	Probable transcription factor KAN3 OS=Arabidopsis thaliana GN=KAN3 PE=2 SV=1	[more]
KAN4_ARATH	2.0e-21	52.94	Probable transcription factor KAN4 OS=Arabidopsis thaliana GN=KAN4 PE=1 SV=1	[more]

BLAST of Cp4.1LG01g19850 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A087G7M2_ARAAL	1.1e-26	58.87	Uncharacterized protein OS=Arabis alpina GN=AALP_AA8G173500 PE=4 SV=1	[more]
A0A078CRM1_BRANA	1.6e-25	55.73	BnaA03g06110D protein OS=Brassica napus GN=BnaA03g06110D PE=4 SV=1	[more]
A0A078C165_BRANA	2.1e-25	55.73	BnaC03g07850D protein OS=Brassica napus GN=BnaC03g07850D PE=4 SV=1	[more]
M4E467_BRARP	6.1e-25	55.88	Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1	[more]
A0A0D3B1H9_BRAOL	1.0e-24	54.96	Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1	[more]

BLAST of Cp4.1LG01g19850 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G16560.1	8.1e-29	57.58	Homeodomain-like superfamily protein	[more]
AT1G32240.1	3.5e-24	61.32	Homeodomain-like superfamily protein	[more]
AT4G17695.1	6.0e-24	60.61	Homeodomain-like superfamily protein	[more]
AT5G42630.1	1.1e-22	52.94	Homeodomain-like superfamily protein	[more]
AT2G02060.1	6.0e-16	69.23	Homeodomain-like superfamily protein	[more]

BLAST of Cp4.1LG01g19850 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659126425\|ref\|XP_008463176.1\|	1.9e-35	54.41	PREDICTED: probable transcription factor KAN2 [Cucumis melo]	[more]
gi\|674233109\|gb\|KFK25874.1\|	1.6e-26	58.87	hypothetical protein AALP_AA8G173500 [Arabis alpina]	[more]
gi\|729463219\|ref\|XP_010525638.1\|	2.7e-26	53.02	PREDICTED: probable transcription factor KAN4 [Tarenaya hassleriana]	[more]
gi\|727642417\|ref\|XP_010492568.1\|	4.6e-26	57.14	PREDICTED: transcription repressor KAN1 [Camelina sativa]	[more]
gi\|1009135011\|ref\|XP_015884755.1\|	1.4e-25	67.03	PREDICTED: probable transcription factor KAN4 isoform X1 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR009057	Homeobox-like_sf
IPR006447	Myb_dom_plants
IPR001005	SANT/Myb

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0009845	seed germination
biological_process	GO:0010162	seed dormancy process
biological_process	GO:0009737	response to abscisic acid
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0010051	xylem and phloem pattern formation
biological_process	GO:0009956	radial pattern formation
biological_process	GO:0009944	polarity specification of adaxial/abaxial axis
biological_process	GO:0048481	plant ovule development
biological_process	GO:0009887	animal organ morphogenesis
biological_process	GO:0010158	abaxial cell fate specification
cellular_component	GO:0009536	plastid
cellular_component	GO:0005667	transcription factor complex
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g19850.1	Cp4.1LG01g19850.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 102..151 score: 2.
IPR006447	Myb domain, plants	TIGRFAMs	TIGR01557	TIGR01557	coord: 101..152 score: 3.2
IPR009057	Homeodomain-like	GENE3D	G3DSA:1.10.10.60		coord: 99..152 score: 1.3
IPR009057	Homeodomain-like	unknown	SSF46689	Homeodomain-like	coord: 97..154 score: 1.97
None	No IPR available	PANTHER	PTHR31496	FAMILY NOT NAMED	coord: 82..150 score: 1.0E-47coord: 1..27 score: 1.0
None	No IPR available	PANTHER	PTHR31496:SF3	SUBFAMILY NOT NAMED	coord: 1..27 score: 1.0E-47coord: 82..150 score: 1.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG01g19850	CmaCh15G007530	Cucurbita maxima (Rimu)	cmacpeB318
Cp4.1LG01g19850	CmaCh04G022830	Cucurbita maxima (Rimu)	cmacpeB721
Cp4.1LG01g19850	CmoCh15G007780	Cucurbita moschata (Rifu)	cmocpeB280
Cp4.1LG01g19850	CmoCh04G023860	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g19850	Cla009148	Watermelon (97103) v1	cpewmB441
Cp4.1LG01g19850	Csa5G429440	Cucumber (Chinese Long) v2	cpecuB441
Cp4.1LG01g19850	MELO3C025116	Melon (DHL92) v3.5.1	cpemeB360
Cp4.1LG01g19850	ClCG01G008730	Watermelon (Charleston Gray)	cpewcgB370
Cp4.1LG01g19850	CSPI05G15270	Wild cucumber (PI 183967)	cpecpiB441
Cp4.1LG01g19850	Lsi09G009120	Bottle gourd (USVL1VR-Ls)	cpelsiB311
Cp4.1LG01g19850	MELO3C025116.2	Melon (DHL92) v3.6.1	cpemedB420
Cp4.1LG01g19850	CsaV3_5G024310	Cucumber (Chinese Long) v3	cpecucB0545
Cp4.1LG01g19850	Bhi12G001052	Wax gourd	cpewgoB0490
Cp4.1LG01g19850	CsGy5G015080	Cucumber (Gy14) v2	cgybcpeB650
Cp4.1LG01g19850	Carg01453	Silver-seed gourd	carcpeB1158
Cp4.1LG01g19850	Carg18279	Silver-seed gourd	carcpeB0747

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g19850	Cucurbita pepo (Zucchini)	cpecpeB199
Cp4.1LG01g19850	Cucumber (Gy14) v1	cgycpeB0704