CmoCh04G023860 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G023860
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Transcription factor, putative
Location	Cmo_Chr04 : 17784904 .. 17788311 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTTTCCCCTTTATTCCCTTCTTTATTTTCTTCTCTCTTCTCTCTCTTCTGCTCTATATCTGTGCATGTCTCTCAAGAACAACAAGAACACCAAGAACAACAACACCAATCAAACCCTAAACTCATATCTTCTCTTTGTTTTTGAATCATTTCTTCCCTTTTTTTAAAAAAAAAACATGCCCAACATTCAAAGCTTTATAAATATTCAATCTTCTTCATCTTCATCATCATCTTCATCTTCCTCTTCTTCTTCATTTCTTGATCTTGATCTTTCTCTTCAAATTTCTCCTCCTAATAATGGAGTTGGGGCTGTTCATACTCATAAATTCAATCAAATTACTAATGGGGTTTGGCTTTTCAATCATCGTAATCATCATCATCATCATGCCTTTGCTTTGCCCCCGCCATTTCTTCGGAACCAATTGGATCCGGGTCGGTCGCCGATGGCAAGAGGGCGGTGCACGAGGGCGCCGAGGATGCGGTGGACGAGTACCCTCCATGCTCAATTTGTTCATGCTGTTGAGCTTCTTGGTGGCCATGAAAGTAACAATTTTGAAGCTTTATTTTCATTTACTTTTTTTTTTAGATTGAATGTTCTAAAAGTTTGGTTTGTTTGTTGTGTTGTTTTTCAGGAGCTACACCTAAATCCGTTCTAGAGCTTATGGATGTCAAGGATCTTACATTGGCTCACGTCAAAAGCCATTTACAGGTTTTTTTTAAAAAAAATATTACGTTATAAATTCAATTATCGATCGTGAATTTGAATCTACGAGATGCTTTAGCTATTAAACCTTGATCGAGTCGATGTCATGAACAGTAGAACACGGTTCCACCACTAAATGAATGCATAATAAATGCCTGCTCCCTTCTCACAAACTAAACCCTAACTTACGAAGAGAGAGAAAATGAAAAATTATCGTTCATGTTCATGTTCATAGGTCCGGTTAAGACATTTTTAGACTCAACTCAATTGTTGGGTTGGTTCGAGCTATTCGTGTCATTTATTCAATTTTTTATTTTTAATAAGAATAAGACGTCATGTAATTAAAACCCATGAAAATCTACCAACCAAATAAATTCAGGTCGGTTCTATTCTTAATTGAACCGAAATAAGTTCATCAACCAACCCAAATCATACACGTTCCACTGGGTTTTCCGGGTCATCAATTTTTTTTTTCCCGAATATAATAAAGTGGGAAAAAAATACAAAATTGAAATCAAAATCATAATCAAACTTTCTAAATCATAATTATGATAATGCTTTAACATTTTGAATCCTTAATCCCTCTTTATTAACACCACTTTCTACATAATAATTATAATTATGCTTTTAACATTTTGAATCCTTTAAAAATTAAGTTTTAAATTAATGAATTATCTTTTCTTTTTTTTTCTTTTTTTTTTAAATATTGTTGCAGATGTTTCGTGCTCATAAGACGACCACCGACAAGCCTGCAGCTTCTCCAGGTAATTCCTTTACCCCTTTTCTTTTTATCAGCCTTATCTCTCTTTTCTTTTTATACCCTAAACCAACCTTCTTGCATTGCATTTACCCAACAAATGTCCTCTATTTTGCTGGACAAGCTCCTATGTTCTTGGACATATATGTACCTCACTTTACTATCAAATCATACAAATTTCATGTTTTATTTGAAGCTCGGTCCGAGGATAGCTCGGGTGTTCTAGACGATGAAATGTTATCCATCTCGATGTCGATAGGAAGTGAAACGGGAGATGGAAGCTTGCAACTTTTTTCGACTCAAAGGGATATGGGCTATTCTTCCTCCAATACTCCCGTTCTCTCTGTGAATTCCACGAGGTAACTTTAATTATTACGTTAAAAACTGTTAATGCTTTATTTAAAACATATTCTTAATTTTTCAAAAGTTTGATTAATACGCTTTAATTTTTTTTTAAAAAAAGTCAAAAACACATTTAGTATTAGTGTATGGACAAAACTTGAAAAGGAATATAACTTATGTGATATAGATAGACGGGAAAGACAGTTTTAAAACTTTTTCCTTAAGGGTGTTAATGCTACTTATTAAAATGAGTATTTTTAAACAAATTATTAACCGTTTTCATTCAAAATTAACAGTAAAAGTATTTCTAATTTTTTTTTTTTTTTTGTAAGTTTAAGGTATTGTTGAAACTTTTGAAACCTCGGAACTATTTTTTAGACGAATTTTTATTAATTTAACGTAAACATACCTCCAAACCCTTATTCGAAAAGAGTAAGAACAAAAATAAAATAAAATATAAAAAAAAGGTAAATGGGTTGTGTTGATTAAAGGTGAAACAAAATCCAAAGAATGCTGTTTTCTGACAAACAAAGAAAAGCATAGATTTTTACGTCCAAAAGATCCAAAATTCAAAGATCTCTGTGTTGCATTGGTTTCTGCATGGATGTTGCGAAGAACGAGAAGAACGAGAAGAACACGAAGAACACGAAGAACACAAGAAGAAGAACATGAACTTAAAAGCCCTTCTGCTACCTTTGCTTTCTTTTCCTTTTTCTTAGCCCTTAATCGCACAACCCTGCCTATCAAATTACCTAAAACAATCAAAAAAGCAACTCAAATCTTCTTTCTTGCGCAAAAGATTGAGTTATGAGTTTGAATTCTTTTTAACTTTTTACTTTATTCCGACGTGTTTCGTTATCTAAACATACAAATTTTTAGATAATAATTAAAAAAATTTTGACACGTAACTTAAGTTCATCTGATGAAGTAATTTCAAAATGGACAAACTATTGGAACCAAGCTTAGAGTTAGAGAATCGAGTTTTTGTTTAGTCTAACTATCCCAAAATTAGTCTCATGTGACACAATTCATGGGTTTTTGTTAACTCGATCATTGAATTAATCTATAACCATGTGTTACGTGTGCATTAAATTAATAGAGTTAATAATGATATGAGTCCATTAGGTATAATAATAATTAAAAATATTTTTTGAACACTTTTTAAATTTTAAGAGTATTTTTTAAATAAAATATTAAGAATTTTAGAATATTTGAAAGCTCCTAAAATGCATTTTTAATTTTTTTTTTAAATTTAAAGATATTATTGAAACTTTTATCGATATATTTTTATTATTTTTGTGAGTCTTCAGCGTTAGAGACGGTCGACCAACGAGGAGTTGCCATGACATGGATGGCGGCCAATCATCAACTTTAAAAGTTCCACCAAGATCCTCACAACAAAAGGTATAAATTCAAGCACAAATTTATATAATATTTTCTTTTTAATATAATTCTAGGAGTAATTTAATTAATATTGATTTACGGGTTTGATTCAGCTCAGATGAGAAGTTGTTCGGGAGATTAATTACATTCGGATTGTCTGAACCCTAATTTAAAGATGGTTTTAGGCAAATCTGATTGTCGTGCGCTCGAGAAGAATGTTTAG

mRNA sequence

CCTTTCCCCTTTATTCCCTTCTTTATTTTCTTCTCTCTTCTCTCTCTTCTGCTCTATATCTGTGCATGTCTCTCAAGAACAACAAGAACACCAAGAACAACAACACCAATCAAACCCTAAACTCATATCTTCTCTTTGTTTTTGAATCATTTCTTCCCTTTTTTTAAAAAAAAAACATGCCCAACATTCAAAGCTTTATAAATATTCAATCTTCTTCATCTTCATCATCATCTTCATCTTCCTCTTCTTCTTCATTTCTTGATCTTGATCTTTCTCTTCAAATTTCTCCTCCTAATAATGGAGTTGGGGCTGTTCATACTCATAAATTCAATCAAATTACTAATGGGGTTTGGCTTTTCAATCATCGTAATCATCATCATCATCATGCCTTTGCTTTGCCCCCGCCATTTCTTCGGAACCAATTGGATCCGGGTCGGTCGCCGATGGCAAGAGGGCGGTGCACGAGGGCGCCGAGGATGCGGTGGACGAGTACCCTCCATGCTCAATTTGTTCATGCTGTTGAGCTTCTTGGTGGCCATGAAAGAGCTACACCTAAATCCGTTCTAGAGCTTATGGATGTCAAGGATCTTACATTGGCTCACGTCAAAAGCCATTTACAGATGTTTCGTGCTCATAAGACGACCACCGACAAGCCTGCAGCTTCTCCAGGCAAATCTGATTGTCGTGCGCTCGAGAAGAATGTTTAG

Coding sequence (CDS)

ATGCCCAACATTCAAAGCTTTATAAATATTCAATCTTCTTCATCTTCATCATCATCTTCATCTTCCTCTTCTTCTTCATTTCTTGATCTTGATCTTTCTCTTCAAATTTCTCCTCCTAATAATGGAGTTGGGGCTGTTCATACTCATAAATTCAATCAAATTACTAATGGGGTTTGGCTTTTCAATCATCGTAATCATCATCATCATCATGCCTTTGCTTTGCCCCCGCCATTTCTTCGGAACCAATTGGATCCGGGTCGGTCGCCGATGGCAAGAGGGCGGTGCACGAGGGCGCCGAGGATGCGGTGGACGAGTACCCTCCATGCTCAATTTGTTCATGCTGTTGAGCTTCTTGGTGGCCATGAAAGAGCTACACCTAAATCCGTTCTAGAGCTTATGGATGTCAAGGATCTTACATTGGCTCACGTCAAAAGCCATTTACAGATGTTTCGTGCTCATAAGACGACCACCGACAAGCCTGCAGCTTCTCCAGGCAAATCTGATTGTCGTGCGCTCGAGAAGAATGTTTAG

Homology

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BLAST of CmoCh04G023860 vs. Swiss-Prot
Match: ROLL9_ORYSJ (Probable transcription factor RL9 OS=Oryza sativa subsp. japonica GN=RL9 PE=2 SV=2)

HSP 1 Score: 134.8 bits (338), Expect = 9.1e-31
Identity = 71/103 (68.93%), Postives = 77/103 (74.76%), Query Frame = 1


Query: 66  HHHHHAFALPPPFLRNQLDPGRSPMARGRCTRAPRMRWTSTLHAQFVHAVELLGGHERAT 125
           HHHHH      PF+          +   R  RAPRMRWTSTLHA+FVHAVELLGGHERAT
Sbjct: 292 HHHHHHLHGGQPFVGALASRFMPKLPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERAT 351

Query: 126 PKSVLELMDVKDLTLAHVKSHLQMFRAHKTTTDKPAASPGKSD 169
           PKSVLELMDVKDLTLAHVKSHLQM+R  K +TDKPAAS G +D
Sbjct: 352 PKSVLELMDVKDLTLAHVKSHLQMYRTVK-STDKPAASSGPAD 393

[Close]

BLAST of CmoCh04G023860 vs. Swiss-Prot
Match: KAN1_ARATH (Transcription repressor KAN1 OS=Arabidopsis thaliana GN=KAN1 PE=1 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.6e-30
Identity = 84/146 (57.53%), Postives = 97/146 (66.44%), Query Frame = 1


Query: 22  SSSSSFLDLDLSLQISPPNNGVGAVHTHKFNQI----TNGVWLFNHRNHHHHHAFALPPP 81
           +SSS + +   SLQ SP   GV   H H  NQ     ++     +H NHHHH        
Sbjct: 149 NSSSGYNNAYRSLQSSPRLKGVPLHHHHHHNQYGVVGSSDSSSPHHHNHHHHG------- 208

Query: 82  FLRNQLDPGRSPMARGRCTRAPRMRWTSTLHAQFVHAVELLGGHERATPKSVLELMDVKD 141
            +R++  P    M   R  RAPRMRWTS+LHA+FVHAVELLGGHERATPKSVLELMDVKD
Sbjct: 209 MIRSRFLP---KMPTKRSMRAPRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKD 268

Query: 142 LTLAHVKSHLQMFRAHKTTTDKPAAS 164
           LTLAHVKSHLQM+R  K TT+KPAAS
Sbjct: 269 LTLAHVKSHLQMYRTVK-TTNKPAAS 283

[Close]

BLAST of CmoCh04G023860 vs. Swiss-Prot
Match: KAN3_ARATH (Probable transcription factor KAN3 OS=Arabidopsis thaliana GN=KAN3 PE=2 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 8.5e-29
Identity = 71/116 (61.21%), Postives = 78/116 (67.24%), Query Frame = 1


Query: 54  ITNGVWLFNHRNHHHHHAFALPPPFLRNQLDPGRSPMARGRCTRAPRMRWTSTLHAQFVH 113
           ITN    FN  N H   A   PP F               R  RAPRMRWT+TLHA FVH
Sbjct: 132 ITNPNCSFNLHNRHRRQAQPQPPRFTAK------------RGVRAPRMRWTTTLHAHFVH 191

Query: 114 AVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMFRAHKTTTDKPAASPGKSDC 170
           AV+LLGGHERATPKSVLELMDV+DLTLAHVKSHLQM+R  K +T+KP  S G+SDC
Sbjct: 192 AVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQMYRTIK-STEKPTTSSGQSDC 234

[Close]

BLAST of CmoCh04G023860 vs. Swiss-Prot
Match: KAN2_ARATH (Probable transcription factor KAN2 OS=Arabidopsis thaliana GN=KAN2 PE=2 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 4.2e-28
Identity = 77/122 (63.11%), Postives = 86/122 (70.49%), Query Frame = 1


Query: 47  HTHKFNQITNGVWLFNHRNHHHHHAFALPPPFLRNQLDPGRSPMARGRCTRAPRMRWTST 106
           + + FN  T+ V   N+ NHHH           R +  P R P  R    RAPRMRWT+T
Sbjct: 174 NNNSFN--TSSVSNPNYHNHHHQ-------TLNRARFMP-RFPAKRSM--RAPRMRWTTT 233

Query: 107 LHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMFRAHKTTTDKPAASPGK 166
           LHA+FVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQM+R  K TTDK AAS G+
Sbjct: 234 LHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVK-TTDKAAASSGQ 282

Query: 167 SD 169
           SD
Sbjct: 294 SD 282

[Close]

BLAST of CmoCh04G023860 vs. Swiss-Prot
Match: KAN4_ARATH (Probable transcription factor KAN4 OS=Arabidopsis thaliana GN=KAN4 PE=1 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 6.3e-24
Identity = 75/159 (47.17%), Postives = 88/159 (55.35%), Query Frame = 1


Query: 17  SSSSSSSSSSFLDLDLSLQISPPNNGVGAVHTHKFNQITNGVWLFNHRNHHHHHAFALPP 76
           SS+SS S SS  DL                 +H+ N     +      +HH   +    P
Sbjct: 40  SSTSSDSGSSLSDL-----------------SHENNFFNKPLLSLGFDHHHQRRSNMFQP 99

Query: 77  PFLRNQLDPGRSPMAR-GRCTRAPRMRWTSTLHAQFVHAVELLGGHERATPKSVLELMDV 136
                      S M    R  RAPRMRWTSTLHA FVHAV+LLGGHERATPKSVLELM+V
Sbjct: 100 QIYGRDFKRSSSSMVGLKRSIRAPRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNV 159

Query: 137 KDLTLAHVKSHLQMFRAHKTTTDKPAASPGKSDCRALEK 175
           KDLTLAHVKSHLQM+R  K  TDK +   GK +  A ++
Sbjct: 160 KDLTLAHVKSHLQMYRTVK-CTDKGSPGEGKVEKEAEQR 180

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BLAST of CmoCh04G023860 vs. TrEMBL
Match: A0A0A0KTP4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G429440 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 4.9e-31
Identity = 71/76 (93.42%), Postives = 73/76 (96.05%), Query Frame = 1


Query: 90  MARGRCTRAPRMRWTSTLHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQM 149
           MARGR  RAPRMRWTS+LHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQM
Sbjct: 1   MARGRSMRAPRMRWTSSLHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQM 60

Query: 150 FRAHKTTTDKPAASPG 166
           FRAHK TT+KPAASPG
Sbjct: 61  FRAHK-TTEKPAASPG 75

[Close]

BLAST of CmoCh04G023860 vs. TrEMBL
Match: Q2PF88_IPONI (KANADI-like transcription factor FEATHERED OS=Ipomoea nil GN=FE PE=2 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 5.4e-30
Identity = 91/168 (54.17%), Postives = 111/168 (66.07%), Query Frame = 1


Query: 6   SFINIQSSSSSSSSSSSSSSSFLDLD-LSLQISPPNNGVGAVHTHKFNQITNGVWLFNHR 65
           S +N  S SSSSSS++++++++   + LS     P+N  G V          G+      
Sbjct: 212 SLLNNPSPSSSSSSAAAAAAAYRRFNGLSSAYQLPHNQYGGV----------GIGATAAS 271

Query: 66  NHHHHHAFALPPP----FLRNQLDPGRSPMARGRCTRAPRMRWTSTLHAQFVHAVELLGG 125
           +HHHHH     PP     +R++  P    +   R  RAPRMRWTSTLHA+FVHAVELLGG
Sbjct: 272 HHHHHHPHHDAPPSHGMMMRSRFLP---KLPAKRSMRAPRMRWTSTLHARFVHAVELLGG 331

Query: 126 HERATPKSVLELMDVKDLTLAHVKSHLQMFRAHKTTTDKPAASPGKSD 169
           HERATPKSVLELMDVKDLTLAHVKSHLQM+R  K TTDKPAAS G+SD
Sbjct: 332 HERATPKSVLELMDVKDLTLAHVKSHLQMYRTVK-TTDKPAASSGQSD 365

[Close]

BLAST of CmoCh04G023860 vs. TrEMBL
Match: A0A0E0M0W1_ORYPU (Uncharacterized protein OS=Oryza punctata PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 2.0e-29
Identity = 73/106 (68.87%), Postives = 81/106 (76.42%), Query Frame = 1


Query: 63  HRNHHHHHAFALPPPFLRNQLDPGRSPMARGRCTRAPRMRWTSTLHAQFVHAVELLGGHE 122
           H +HHHHH     P  L ++  P    +   R  RAPRMRWTSTLHA+FVHAVELLGGHE
Sbjct: 128 HHHHHHHHLHGGQPFGLASRFMP---KLPAKRSMRAPRMRWTSTLHARFVHAVELLGGHE 187

Query: 123 RATPKSVLELMDVKDLTLAHVKSHLQMFRAHKTTTDKPAASPGKSD 169
           RATPKSVLELMDVKDLTLAHVKSHLQM+R  K +TDKPAAS G +D
Sbjct: 188 RATPKSVLELMDVKDLTLAHVKSHLQMYRTVK-STDKPAASSGPAD 229

[Close]

BLAST of CmoCh04G023860 vs. TrEMBL
Match: M4E467_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 4.6e-29
Identity = 87/152 (57.24%), Postives = 100/152 (65.79%), Query Frame = 1


Query: 17  SSSSSSSSSSFLDLDLSLQISPPNNGVGAVHTHKFNQITNGVWLFNHRNHHHHHAFALPP 76
           SSS  +SSS + +   SLQ SP   GV  VH H    +       +  +HHHHH      
Sbjct: 146 SSSILNSSSGYNNAYRSLQSSPRLKGV-PVHHHNHYGVVGSSDSSSPHHHHHHHGM---- 205

Query: 77  PFLRNQLDPGRSPMARGRCTRAPRMRWTSTLHAQFVHAVELLGGHERATPKSVLELMDVK 136
             +R++  P    M   R  RAPRMRWTS+LHA+FVHAVELLGGHERATPKSVLELMDVK
Sbjct: 206 --IRSRFLP---KMPTKRSMRAPRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVK 265

Query: 137 DLTLAHVKSHLQMFRAHKTTTDKPAASPGKSD 169
           DLTLAHVKSHLQM+R  K TT+KPAAS G  D
Sbjct: 266 DLTLAHVKSHLQMYRTVK-TTNKPAASSGIHD 286

[Close]

BLAST of CmoCh04G023860 vs. TrEMBL
Match: B5LZ60_MAIZE (Milkweed pod1 OS=Zea mays GN=mwp1 PE=2 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 5.9e-29
Identity = 72/104 (69.23%), Postives = 80/104 (76.92%), Query Frame = 1


Query: 65  NHHHHHAFALPPPFLRNQLDPGRSPMARGRCTRAPRMRWTSTLHAQFVHAVELLGGHERA 124
           +HHHHH     P  L ++  P    +   R  RAPRMRWTSTLHA+FVHAVELLGGHERA
Sbjct: 251 HHHHHHLHGAQPFGLGSRFMP---KLPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERA 310

Query: 125 TPKSVLELMDVKDLTLAHVKSHLQMFRAHKTTTDKPAASPGKSD 169
           TPKSVLELMDVKDLTLAHVKSHLQM+R  K +TDKPAAS G +D
Sbjct: 311 TPKSVLELMDVKDLTLAHVKSHLQMYRTVK-STDKPAASSGAND 350

[Close]

BLAST of CmoCh04G023860 vs. TAIR10
Match: AT5G16560.1 (AT5G16560.1 Homeodomain-like superfamily protein)

HSP 1 Score: 134.0 bits (336), Expect = 8.8e-32
Identity = 84/146 (57.53%), Postives = 97/146 (66.44%), Query Frame = 1


Query: 22  SSSSSFLDLDLSLQISPPNNGVGAVHTHKFNQI----TNGVWLFNHRNHHHHHAFALPPP 81
           +SSS + +   SLQ SP   GV   H H  NQ     ++     +H NHHHH        
Sbjct: 149 NSSSGYNNAYRSLQSSPRLKGVPLHHHHHHNQYGVVGSSDSSSPHHHNHHHHG------- 208

Query: 82  FLRNQLDPGRSPMARGRCTRAPRMRWTSTLHAQFVHAVELLGGHERATPKSVLELMDVKD 141
            +R++  P    M   R  RAPRMRWTS+LHA+FVHAVELLGGHERATPKSVLELMDVKD
Sbjct: 209 MIRSRFLP---KMPTKRSMRAPRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKD 268

Query: 142 LTLAHVKSHLQMFRAHKTTTDKPAAS 164
           LTLAHVKSHLQM+R  K TT+KPAAS
Sbjct: 269 LTLAHVKSHLQMYRTVK-TTNKPAAS 283

[Close]

BLAST of CmoCh04G023860 vs. TAIR10
Match: AT4G17695.1 (AT4G17695.1 Homeodomain-like superfamily protein)

HSP 1 Score: 128.3 bits (321), Expect = 4.8e-30
Identity = 71/116 (61.21%), Postives = 78/116 (67.24%), Query Frame = 1


Query: 54  ITNGVWLFNHRNHHHHHAFALPPPFLRNQLDPGRSPMARGRCTRAPRMRWTSTLHAQFVH 113
           ITN    FN  N H   A   PP F               R  RAPRMRWT+TLHA FVH
Sbjct: 132 ITNPNCSFNLHNRHRRQAQPQPPRFTAK------------RGVRAPRMRWTTTLHAHFVH 191

Query: 114 AVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMFRAHKTTTDKPAASPGKSDC 170
           AV+LLGGHERATPKSVLELMDV+DLTLAHVKSHLQM+R  K +T+KP  S G+SDC
Sbjct: 192 AVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQMYRTIK-STEKPTTSSGQSDC 234

[Close]

BLAST of CmoCh04G023860 vs. TAIR10
Match: AT1G32240.1 (AT1G32240.1 Homeodomain-like superfamily protein)

HSP 1 Score: 125.9 bits (315), Expect = 2.4e-29
Identity = 77/122 (63.11%), Postives = 86/122 (70.49%), Query Frame = 1


Query: 47  HTHKFNQITNGVWLFNHRNHHHHHAFALPPPFLRNQLDPGRSPMARGRCTRAPRMRWTST 106
           + + FN  T+ V   N+ NHHH           R +  P R P  R    RAPRMRWT+T
Sbjct: 174 NNNSFN--TSSVSNPNYHNHHHQ-------TLNRARFMP-RFPAKRSM--RAPRMRWTTT 233

Query: 107 LHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMFRAHKTTTDKPAASPGK 166
           LHA+FVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQM+R  K TTDK AAS G+
Sbjct: 234 LHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVK-TTDKAAASSGQ 282

Query: 167 SD 169
           SD
Sbjct: 294 SD 282

[Close]

BLAST of CmoCh04G023860 vs. TAIR10
Match: AT5G42630.1 (AT5G42630.1 Homeodomain-like superfamily protein)

HSP 1 Score: 112.1 bits (279), Expect = 3.6e-25
Identity = 75/159 (47.17%), Postives = 88/159 (55.35%), Query Frame = 1


Query: 17  SSSSSSSSSSFLDLDLSLQISPPNNGVGAVHTHKFNQITNGVWLFNHRNHHHHHAFALPP 76
           SS+SS S SS  DL                 +H+ N     +      +HH   +    P
Sbjct: 40  SSTSSDSGSSLSDL-----------------SHENNFFNKPLLSLGFDHHHQRRSNMFQP 99

Query: 77  PFLRNQLDPGRSPMAR-GRCTRAPRMRWTSTLHAQFVHAVELLGGHERATPKSVLELMDV 136
                      S M    R  RAPRMRWTSTLHA FVHAV+LLGGHERATPKSVLELM+V
Sbjct: 100 QIYGRDFKRSSSSMVGLKRSIRAPRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNV 159

Query: 137 KDLTLAHVKSHLQMFRAHKTTTDKPAASPGKSDCRALEK 175
           KDLTLAHVKSHLQM+R  K  TDK +   GK +  A ++
Sbjct: 160 KDLTLAHVKSHLQMYRTVK-CTDKGSPGEGKVEKEAEQR 180

[Close]

BLAST of CmoCh04G023860 vs. TAIR10
Match: AT2G02060.1 (AT2G02060.1 Homeodomain-like superfamily protein)

HSP 1 Score: 89.7 bits (221), Expect = 1.9e-18
Identity = 44/70 (62.86%), Postives = 52/70 (74.29%), Query Frame = 1


Query: 99  PRMRWTSTLHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMFR-AHKTTT 158
           PR+RWT  LH  FVHAVE+LGG  RATPK VL++MDVK LT++HVKSHLQM+R   K T 
Sbjct: 30  PRLRWTPDLHRCFVHAVEILGGQHRATPKLVLKMMDVKGLTISHVKSHLQMYRGGSKLTL 89

Query: 159 DKPAASPGKS 168
           +KP  S   S
Sbjct: 90  EKPEESSSSS 99

[Close]

BLAST of CmoCh04G023860 vs. NCBI nr
Match: gi|659126425|ref|XP_008463176.1| (PREDICTED: probable transcription factor KAN2 [Cucumis melo])

HSP 1 Score: 171.0 bits (432), Expect = 1.8e-39
Identity = 121/227 (53.30%), Postives = 131/227 (57.71%), Query Frame = 1


Query: 1   MPNIQSFINIQSSSSSSSSSSSSSSS-FLDLD---------------LSLQISPPNNGVG 60
           MPNIQ  INI+SSSSSSSSSSSSSS+ FLDL                 +  I   N    
Sbjct: 1   MPNIQRVINIESSSSSSSSSSSSSSTPFLDLSLQISPPNSIINHSTFPTNTIETSNGSTN 60

Query: 61  AVHTHKF-----NQITNGVWLFNH-------------------------------RNHHH 120
            + TH +     NQI NGV L +H                                +   
Sbjct: 61  QLFTHHYTNKSLNQINNGVSLDHHHACPINGFPIHPNPSIFYPKQRLTSPAFSGASSSSS 120

Query: 121 HHAFALPPPFLRNQLDPGR-SPMARGRCTRAPRMRWTSTLHAQFVHAVELLGGHERATPK 175
              F LPPP+L   LD  R S +ARGR  RAPRMRWTS+LHAQFVHAVELLGGHERATPK
Sbjct: 121 ISTFTLPPPYLHYHLDSDRLSAVARGRSMRAPRMRWTSSLHAQFVHAVELLGGHERATPK 180

[Close]

BLAST of CmoCh04G023860 vs. NCBI nr
Match: gi|778702668|ref|XP_011655242.1| (PREDICTED: transcription repressor KAN1-like [Cucumis sativus])

HSP 1 Score: 142.5 bits (358), Expect = 7.0e-31
Identity = 71/76 (93.42%), Postives = 73/76 (96.05%), Query Frame = 1


Query: 90  MARGRCTRAPRMRWTSTLHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQM 149
           MARGR  RAPRMRWTS+LHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQM
Sbjct: 1   MARGRSMRAPRMRWTSSLHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQM 60

Query: 150 FRAHKTTTDKPAASPG 166
           FRAHK TT+KPAASPG
Sbjct: 61  FRAHK-TTEKPAASPG 75

[Close]

BLAST of CmoCh04G023860 vs. NCBI nr
Match: gi|84778268|dbj|BAE73187.1| (KANADI-like transcription factor FEATHERED [Ipomoea nil])

HSP 1 Score: 139.0 bits (349), Expect = 7.7e-30
Identity = 91/168 (54.17%), Postives = 111/168 (66.07%), Query Frame = 1


Query: 6   SFINIQSSSSSSSSSSSSSSSFLDLD-LSLQISPPNNGVGAVHTHKFNQITNGVWLFNHR 65
           S +N  S SSSSSS++++++++   + LS     P+N  G V          G+      
Sbjct: 212 SLLNNPSPSSSSSSAAAAAAAYRRFNGLSSAYQLPHNQYGGV----------GIGATAAS 271

Query: 66  NHHHHHAFALPPP----FLRNQLDPGRSPMARGRCTRAPRMRWTSTLHAQFVHAVELLGG 125
           +HHHHH     PP     +R++  P    +   R  RAPRMRWTSTLHA+FVHAVELLGG
Sbjct: 272 HHHHHHPHHDAPPSHGMMMRSRFLP---KLPAKRSMRAPRMRWTSTLHARFVHAVELLGG 331

Query: 126 HERATPKSVLELMDVKDLTLAHVKSHLQMFRAHKTTTDKPAASPGKSD 169
           HERATPKSVLELMDVKDLTLAHVKSHLQM+R  K TTDKPAAS G+SD
Sbjct: 332 HERATPKSVLELMDVKDLTLAHVKSHLQMYRTVK-TTDKPAASSGQSD 365

[Close]

BLAST of CmoCh04G023860 vs. NCBI nr
Match: gi|747077524|ref|XP_011085885.1| (PREDICTED: transcription repressor KAN1 [Sesamum indicum])

HSP 1 Score: 137.5 bits (345), Expect = 2.2e-29
Identity = 96/174 (55.17%), Postives = 110/174 (63.22%), Query Frame = 1


Query: 12  SSSSSSSSSSSSSSSF----LDLDLSLQISPPNNGVGAVHTH-------KFNQITNGVWL 71
           S SS SSSSSSSSS F    LD  + L    PN    A   H       +F+ +++   L
Sbjct: 167 SWSSPSSSSSSSSSPFFGGGLDHHMPLLNLGPNGSSTAAAYHCGGGGGGRFSGLSS-YQL 226

Query: 72  FNHRNHHHHHAFALPPP------FLRNQLDPGRSPMARGRCTRAPRMRWTSTLHAQFVHA 131
            +H NHHH +   +          +R++  P    M   R  RAPRMRWTSTLHA+FVHA
Sbjct: 227 HHHHNHHHQYGMGVSHHEGSHHGIMRSRFLP---KMPAKRSMRAPRMRWTSTLHARFVHA 286

Query: 132 VELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMFRAHKTTTDKPAASPGKSD 169
           VELLGGHERATPKSVLELMDVKDLTLAHVKSHLQM+R  K TTDKPAAS G SD
Sbjct: 287 VELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVK-TTDKPAASSGHSD 335

[Close]

BLAST of CmoCh04G023860 vs. NCBI nr
Match: gi|672189851|ref|XP_008775089.1| (PREDICTED: transcription repressor KAN1-like isoform X1 [Phoenix dactylifera])

HSP 1 Score: 137.5 bits (345), Expect = 2.2e-29
Identity = 92/170 (54.12%), Postives = 112/170 (65.88%), Query Frame = 1


Query: 12  SSSSSSSSSSSSSSSFLDLDLSLQISPPNNGV---GAVHTHK-------FNQITNGVWLF 71
           SSSSSS  SSSS +S  +LD +  +     GV   G+ + H+       FN +++  +  
Sbjct: 157 SSSSSSMQSSSSLASPSNLDHAAPLLHRAGGVPPMGSSYHHRLVAAPTSFNWLSSESFKS 216

Query: 72  NHRNHHHHHAFA---LPPPFLRNQLDPGRSPMARGRCTRAPRMRWTSTLHAQFVHAVELL 131
           +H+ HHH +       P   +R++     S     R  RAPRMRWTSTLHA+FVHAVELL
Sbjct: 217 HHQLHHHQYGMGPLDAPHSMIRSRF---MSKHPTRRSMRAPRMRWTSTLHARFVHAVELL 276

Query: 132 GGHERATPKSVLELMDVKDLTLAHVKSHLQMFRAHKTTTDKPAASPGKSD 169
           GGHERATPKSVLELMDVKDLTLAHVKSHLQM+R  K TTDKPAAS G+SD
Sbjct: 277 GGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVK-TTDKPAASSGQSD 322

The following BLAST results are available for this feature:

BLAST of CmoCh04G023860 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ROLL9_ORYSJ	9.1e-31	68.93	Probable transcription factor RL9 OS=Oryza sativa subsp. japonica GN=RL9 PE=2 SV...	[more]
KAN1_ARATH	1.6e-30	57.53	Transcription repressor KAN1 OS=Arabidopsis thaliana GN=KAN1 PE=1 SV=1	[more]
KAN3_ARATH	8.5e-29	61.21	Probable transcription factor KAN3 OS=Arabidopsis thaliana GN=KAN3 PE=2 SV=1	[more]
KAN2_ARATH	4.2e-28	63.11	Probable transcription factor KAN2 OS=Arabidopsis thaliana GN=KAN2 PE=2 SV=1	[more]
KAN4_ARATH	6.3e-24	47.17	Probable transcription factor KAN4 OS=Arabidopsis thaliana GN=KAN4 PE=1 SV=1	[more]

BLAST of CmoCh04G023860 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KTP4_CUCSA	4.9e-31	93.42	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G429440 PE=4 SV=1	[more]
Q2PF88_IPONI	5.4e-30	54.17	KANADI-like transcription factor FEATHERED OS=Ipomoea nil GN=FE PE=2 SV=1	[more]
A0A0E0M0W1_ORYPU	2.0e-29	68.87	Uncharacterized protein OS=Oryza punctata PE=4 SV=1	[more]
M4E467_BRARP	4.6e-29	57.24	Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1	[more]
B5LZ60_MAIZE	5.9e-29	69.23	Milkweed pod1 OS=Zea mays GN=mwp1 PE=2 SV=1	[more]

BLAST of CmoCh04G023860 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G16560.1	8.8e-32	57.53	Homeodomain-like superfamily protein	[more]
AT4G17695.1	4.8e-30	61.21	Homeodomain-like superfamily protein	[more]
AT1G32240.1	2.4e-29	63.11	Homeodomain-like superfamily protein	[more]
AT5G42630.1	3.6e-25	47.17	Homeodomain-like superfamily protein	[more]
AT2G02060.1	1.9e-18	62.86	Homeodomain-like superfamily protein	[more]

BLAST of CmoCh04G023860 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659126425\|ref\|XP_008463176.1\|	1.8e-39	53.30	PREDICTED: probable transcription factor KAN2 [Cucumis melo]	[more]
gi\|778702668\|ref\|XP_011655242.1\|	7.0e-31	93.42	PREDICTED: transcription repressor KAN1-like [Cucumis sativus]	[more]
gi\|84778268\|dbj\|BAE73187.1\|	7.7e-30	54.17	KANADI-like transcription factor FEATHERED [Ipomoea nil]	[more]
gi\|747077524\|ref\|XP_011085885.1\|	2.2e-29	55.17	PREDICTED: transcription repressor KAN1 [Sesamum indicum]	[more]
gi\|672189851\|ref\|XP_008775089.1\|	2.2e-29	54.12	PREDICTED: transcription repressor KAN1-like isoform X1 [Phoenix dactylifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001005	SANT/Myb
IPR006447	Myb_dom_plants
IPR009057	Homeobox-like_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010158	abaxial cell fate specification
biological_process	GO:0009737	response to abscisic acid
biological_process	GO:0048481	plant ovule development
biological_process	GO:0009944	polarity specification of adaxial/abaxial axis
biological_process	GO:0009956	radial pattern formation
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0010051	xylem and phloem pattern formation
biological_process	GO:0008150	biological_process
biological_process	GO:0009887	animal organ morphogenesis
biological_process	GO:0009845	seed germination
biological_process	GO:0010162	seed dormancy process
biological_process	GO:0009793	embryo development ending in seed dormancy
cellular_component	GO:0005667	transcription factor complex
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G023860.1	CmoCh04G023860.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 100..150 score: 1.
IPR006447	Myb domain, plants	TIGRFAMs	TIGR01557	TIGR01557	coord: 99..154 score: 1.2
IPR009057	Homeodomain-like	GENE3D	G3DSA:1.10.10.60		coord: 97..153 score: 2.3
IPR009057	Homeodomain-like	unknown	SSF46689	Homeodomain-like	coord: 95..154 score: 9.68
None	No IPR available	PANTHER	PTHR31496	FAMILY NOT NAMED	coord: 1..27 score: 1.2E-56coord: 80..168 score: 1.2
None	No IPR available	PANTHER	PTHR31496:SF3	SUBFAMILY NOT NAMED	coord: 1..27 score: 1.2E-56coord: 80..168 score: 1.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G023860	CmaCh15G007530	Cucurbita maxima (Rimu)	cmacmoB309
CmoCh04G023860	CmaCh04G022830	Cucurbita maxima (Rimu)	cmacmoB729
CmoCh04G023860	Cla009148	Watermelon (97103) v1	cmowmB707
CmoCh04G023860	Csa5G429440	Cucumber (Chinese Long) v2	cmocuB740
CmoCh04G023860	MELO3C025116	Melon (DHL92) v3.5.1	cmomeB626
CmoCh04G023860	ClCG01G008730	Watermelon (Charleston Gray)	cmowcgB636
CmoCh04G023860	CSPI05G15270	Wild cucumber (PI 183967)	cmocpiB749
CmoCh04G023860	Lsi09G009120	Bottle gourd (USVL1VR-Ls)	cmolsiB610
CmoCh04G023860	Cp4.1LG01g19850	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G023860	MELO3C025116.2	Melon (DHL92) v3.6.1	cmomedB715
CmoCh04G023860	CsaV3_5G024310	Cucumber (Chinese Long) v3	cmocucB0876
CmoCh04G023860	Cla97C01G008960	Watermelon (97103) v2	cmowmbB676
CmoCh04G023860	Bhi12G001052	Wax gourd	cmowgoB0822
CmoCh04G023860	CsGy5G015080	Cucumber (Gy14) v2	cgybcmoB654
CmoCh04G023860	Carg01453	Silver-seed gourd	carcmoB1121
CmoCh04G023860	Carg18279	Silver-seed gourd	carcmoB0716

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh04G023860	CmoCh15G007780	Cucurbita moschata (Rifu)	cmocmoB262

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G023860	Cucumber (Gy14) v1	cgycmoB0740
CmoCh04G023860	Cucurbita pepo (Zucchini)	cmocpeB657