CmaCh04G022830 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G022830
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Transcription factor, putative
Location	Cma_Chr04 : 15920999 .. 15924318 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCAACATTCAAAGCTTTATAAATATTCAATCTTCATCATCTTCGTCATCTTCTTCTTCTTCTTCTTCTTCATTTCTCGATCTTGATCTTTCTCTTCAAATTTCTCCTCCTAATAATGGAGTTGGGGCTGTTCATAATCATAAATTCAATCAAATTACTAATGGGGTTTGGCTTTTCAATCATCATAATCATCATCATCATGCCTTCGCTTCGCCCCTGCCGTTTCTTCAGCACCAATTGGATCCGGGTCGGTCGCCGATGGCGAGAGGGCGGTGCACGAGGGCCCCGAGGATGCGGTGGACGAGTACCCTCCATGCTCAGTTTGTTCATGCTGTTGAGCTTCTTGGTGGCCATGAAAGTAACAATTTTGAAGCTTTATTTTCATTTACTTTTTTTAGATTGAATGTATCTAGAAGTTTGGTTGGTTTGTGTTGTTTTTCAGGAGCTACACCTAAATCTGTTCTAGAGCTTATGGATGTCAAGGATCTTACATTGGCTCACGTCAAAAGCCATTTACAGGTTTTTTTTCTTTCTTTTTTTAAATATTACGTTATAAATTCGATTATCGAGCGTGAATTTGATGAATCTACGAGATAATAGGGATGCTTTAGCTATTAAACTTTGCTCGAGTCTGTGTCATGAACAGTAGAACACGGTTCCACAACTAAATGAATGCATGTTCATAGGTCGGGTTGAGACATTTTTAGACTCAACCCAATTGTTCGAATCATAAATTTTTGGATTGGGTTGGTTCGAGCTATTCCGGTCATTTATTCAAATTTTTATTTTTAATAAGATTAAAACGTTACGTAATTAAAACCCATGAAAACCTACCAATCGGTTCTATTCTAAATTGAACCAAAATAAGTTAATCAACCAACTCAAATTATCCAGGTTCGGTTGGGTTTTTCGGGTCATCAAAAAAAAATTCGAATATAATAAAGTGGGAAAAAATACATTAAAATCATAATCATAATCAAACTTTCTAAATCATAATTATGATAATGCTTTAACATTTTGAATCCTTAATCTCTCTTTATTAACACCACTTTCTACATAATAATTATAATTATGCTTTTAACATTTTGAATCCTTAATCTCTTTAATTTCGAGCTTTAAAAATTAAGTTTTAAATTAATGAATTATCTTTCTTTATTGTTGCAGATGTTTCGTGCTCTTAAGACGACCACCGACAAGCCTGCAGCTTCTCCAGGTAATTCCTTTGCCCCTTTTCTTTTTATCAGCCTTATCTCTTTCTTTATTTTTATACCCTAAACCAACCTTCTTGCATTGCATTTACCCAACAAATGCCCTCTATTTTGCTGGACAAGCTCCTATGTTCTTGGACAAATTATACAAATTTGAGTTGATTATGTTCATATATTGCGTGTTTTATTTGAAGGTCGGTCCGAGGATAGCTCTGGTGTTCTAGACGATGAAATGTTATCGATCTCGATGTCGATGGGAAGTGAAACGGGAGATGGAAGCTTGCAACTTTTTTCGACTCGAAGGGATATGGGCTATTCTTCCTCAAATACTCTCGTTCTTTCTATGAATTCAACGAGGTAACTTTAATTATTACGCTTTAAAAAATATTTTTAATTTTTCAAAAGTTTTATTAATACGCTTTAATTTTTTTTTAAAAAAAGTCAAAAATACATTTAGTGTTAGTATATGGACAAATATATAGATAGACAGGAAAGACGTTGGATGATGAAAGTCCCACATCGGCTAATTTAGGGAATGGTCATGGGTTTATAATCTAAGAATACACTCTTCATTGGTATGAGGCCTTTTGGGAAGCCCAAAGCAAAGCCATGAGAGCTTATGCTCAAAGTGGACAATATCATACTATTGTGGAGAGTTGTGTTCGTCTAACATGGTGTCAAAGTCATGCCCTAAACTTAGCCGTGTCAATAGATTGACAAATCCTTAAATGTCGAACAAAGAACTCCAAAAGGAGTCGAGATTAAAATTTTTTATTAATATCGTTAAGGGTATTAATGATTTTTTTAAAGTTCAAAGTATTTTTAAACAAATTATTAACCGTTTTTATTTAAAATTAACGGTAAAGATATTTCTGTAACTTTTTTTTTTCGGTAAGTTTAAGGGTATTATTGAAACTATTTTTTAGACGAATTTTTATTAATTTAACGTAAACATACCTCCAAACCCTTATTCGAAAAGAGTAAGAACAAAAAAATATTTAAAAAAAAAAAAACGTAAATGGGTTGTGTTGATTAAAGGTGAAACAAAATCCAAAGACTGCTGTGTTCTGACAAACAAAGAAAAGCATAGATTTTTACGTCCAAAAGATCCAAAATTCAAAGATCTCTGTGTTGCTTTGGTTTCTGCATGGATGTTGCGAAGAACAAGAAGAACATGAAGAACATGATGAACACAAGAAGAAGCCTTTGCTTTCTTTTCCTTTTTCTTTGCCCTTCATCGCACATCCCTGCCTATCAAATTACCTAAAAGAATCAAAAAAGCAACTCAAATCTTCTTTCTTACACAAAAGATTGAGTTTTGAGTTTGAATTCCTTTTTAACTTTTTACTTTATTCCGATGTGTTTCGTTATCTAAACATTCAAATTGATAATAATTAAAAATCTTTTGATACGTAACTTAAGTTCATCCGATGAAGTAATTTCAAAGTGGGCAAACTATTGGGACTAAGCTTAGGGTTAGAGAATCGAATTTTTGTTTAGTCTAGCTAACCCAAAATTTGTCTCGTGTGACACAATTCATGGGTTTTGTTCACTCGATCATTGAATTAATCTATAATCACGTGTTATGTGTGCATTAAATTAATAGAGTTAATAATGATATGAGTCTATTAGGTATAATAATAATTAAAATTATTTGTTTTAACACTTTAAATTTCAAGAGTATTTTTTAAACAAAGTATCAGCAATTTAAAGATATTATTAAAACTTTTATCGAGATATATTTATTATGTTCGTGAGTTTTCAGCGTTAGAGACGGTCGGCCAACAAGGAGTTGCCATGACATGGATGGCGGCCAATCATCAACTTTAAAAGTTCCACCAAAATCCTCACAACAAAAGGTATAAATTCAAGCACAAATTTATATAATATTTTCTTTTTAATATACTTGATTAACCAATGAAATTTAATATTAAAAAAAAAAAAACAACAATTCTTCTAAGAGTAACTTAATTAATATTGATTTACGGGTTTGATTCAGTTCAGATGAGAAGTTGTTCGAGAGATTAATTGCATTTGGATTGTCTGAACCCTAATTTAGAGATGGTTTTAGGCAAATTTGATTGTCGTGTGCTCGAGAAGAAAGTCCGA

mRNA sequence

ATGCCCAACATTCAAAGCTTTATAAATATTCAATCTTCATCATCTTCGTCATCTTCTTCTTCTTCTTCTTCTTCATTTCTCGATCTTGATCTTTCTCTTCAAATTTCTCCTCCTAATAATGGAGTTGGGGCTGTTCATAATCATAAATTCAATCAAATTACTAATGGGGTTTGGCTTTTCAATCATCATAATCATCATCATCATGCCTTCGCTTCGCCCCTGCCGTTTCTTCAGCACCAATTGGATCCGGGTCGGTCGCCGATGGCGAGAGGGCGGTGCACGAGGGCCCCGAGGATGCGGTGGACGAGTACCCTCCATGCTCAGTTTGTTCATGCTGTTGAGCTTCTTGGTGGCCATGAAAGAGCTACACCTAAATCTGTTCTAGAGCTTATGGATGTCAAGGATCTTACATTGGCTCACGTCAAAAGCCATTTACAGATGTTTCGTGCTCTTAAGACGACCACCGACAAGCCTGCAGCTTCTCCAGCGTTAGAGACGGTCGGCCAACAAGGAGTTGCCATGACATGGATGGCGGCCAATCATCAACTTTAAAAGTTCCACCAAAATCCTCACAACAAAAGTTCAGATGAGAAGTTGTTCGAGAGATTAATTGCATTTGGATTGTCTGAACCCTAATTTAGAGATGGTTTTAGGCAAATTTGATTGTCGTGTGCTCGAGAAGAAAGTCCGA

Coding sequence (CDS)

ATGCCCAACATTCAAAGCTTTATAAATATTCAATCTTCATCATCTTCGTCATCTTCTTCTTCTTCTTCTTCTTCATTTCTCGATCTTGATCTTTCTCTTCAAATTTCTCCTCCTAATAATGGAGTTGGGGCTGTTCATAATCATAAATTCAATCAAATTACTAATGGGGTTTGGCTTTTCAATCATCATAATCATCATCATCATGCCTTCGCTTCGCCCCTGCCGTTTCTTCAGCACCAATTGGATCCGGGTCGGTCGCCGATGGCGAGAGGGCGGTGCACGAGGGCCCCGAGGATGCGGTGGACGAGTACCCTCCATGCTCAGTTTGTTCATGCTGTTGAGCTTCTTGGTGGCCATGAAAGAGCTACACCTAAATCTGTTCTAGAGCTTATGGATGTCAAGGATCTTACATTGGCTCACGTCAAAAGCCATTTACAGATGTTTCGTGCTCTTAAGACGACCACCGACAAGCCTGCAGCTTCTCCAGCGTTAGAGACGGTCGGCCAACAAGGAGTTGCCATGACATGGATGGCGGCCAATCATCAACTTTAA

Protein sequence

MPNIQSFINIQSSSSSSSSSSSSSSFLDLDLSLQISPPNNGVGAVHNHKFNQITNGVWLFNHHNHHHHAFASPLPFLQHQLDPGRSPMARGRCTRAPRMRWTSTLHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMFRALKTTTDKPAASPALETVGQQGVAMTWMAANHQL

Homology

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BLAST of CmaCh04G022830 vs. Swiss-Prot
Match: KAN1_ARATH (Transcription repressor KAN1 OS=Arabidopsis thaliana GN=KAN1 PE=1 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 8.6e-32
Identity = 87/166 (52.41%), Postives = 108/166 (65.06%), Query Frame = 1


Query: 21  SSSSSFLDLDLSLQISPPNNGVGAVHNHKFNQI----TNGVWLFNHHNHHHHAFASPLPF 80
           +SSS + +   SLQ SP   GV   H+H  NQ     ++     +HHNHHHH        
Sbjct: 149 NSSSGYNNAYRSLQSSPRLKGVPLHHHHHHNQYGVVGSSDSSSPHHHNHHHHGM------ 208

Query: 81  LQHQLDPGRSPMARGRCTRAPRMRWTSTLHAQFVHAVELLGGHERATPKSVLELMDVKDL 140
           ++ +  P    M   R  RAPRMRWTS+LHA+FVHAVELLGGHERATPKSVLELMDVKDL
Sbjct: 209 IRSRFLP---KMPTKRSMRAPRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDL 268

Query: 141 TLAHVKSHLQMFRALKTTTDKPAASPALETVGQQGVAMTWMAANHQ 183
           TLAHVKSHLQM+R +K TT+KPAAS   +  G++ + +     +HQ
Sbjct: 269 TLAHVKSHLQMYRTVK-TTNKPAASS--DGSGEEEMGINGNEVHHQ 302

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BLAST of CmaCh04G022830 vs. Swiss-Prot
Match: ROLL9_ORYSJ (Probable transcription factor RL9 OS=Oryza sativa subsp. japonica GN=RL9 PE=2 SV=2)

HSP 1 Score: 130.6 bits (327), Expect = 1.8e-29
Identity = 69/99 (69.70%), Postives = 76/99 (76.77%), Query Frame = 1


Query: 63  HNHHHHAFASPLPFLQHQLDPGRSPMARGRCTRAPRMRWTSTLHAQFVHAVELLGGHERA 122
           H+HHHH      PF+          +   R  RAPRMRWTSTLHA+FVHAVELLGGHERA
Sbjct: 292 HHHHHHLHGGQ-PFVGALASRFMPKLPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERA 351

Query: 123 TPKSVLELMDVKDLTLAHVKSHLQMFRALKTTTDKPAAS 162
           TPKSVLELMDVKDLTLAHVKSHLQM+R +K +TDKPAAS
Sbjct: 352 TPKSVLELMDVKDLTLAHVKSHLQMYRTVK-STDKPAAS 388

[Close]

BLAST of CmaCh04G022830 vs. Swiss-Prot
Match: KAN2_ARATH (Probable transcription factor KAN2 OS=Arabidopsis thaliana GN=KAN2 PE=2 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.5e-28
Identity = 77/126 (61.11%), Postives = 86/126 (68.25%), Query Frame = 1


Query: 46  HNHKFNQITNGVWLFNHHNHHHHAFASPLPFLQHQLDPGRSPMARGRCTRAPRMRWTSTL 105
           +N+ FN  T+ V   N+HNHHH         L       R P  R    RAPRMRWT+TL
Sbjct: 174 NNNSFN--TSSVSNPNYHNHHHQT-------LNRARFMPRFPAKRSM--RAPRMRWTTTL 233

Query: 106 HAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMFRALKTTTDKPAASPALE 165
           HA+FVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQM+R +K TTDK AAS    
Sbjct: 234 HARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVK-TTDKAAASSGQS 287

Query: 166 TVGQQG 172
            V + G
Sbjct: 294 DVYENG 287

[Close]

BLAST of CmaCh04G022830 vs. Swiss-Prot
Match: KAN3_ARATH (Probable transcription factor KAN3 OS=Arabidopsis thaliana GN=KAN3 PE=2 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.8e-26
Identity = 69/109 (63.30%), Postives = 76/109 (69.72%), Query Frame = 1


Query: 53  ITNGVWLFNHHNHHHHAFASPLPFLQHQLDPGRSPMARGRCTRAPRMRWTSTLHAQFVHA 112
           ITN    FN HN H           Q Q  P R    RG   RAPRMRWT+TLHA FVHA
Sbjct: 132 ITNPNCSFNLHNRHRR---------QAQPQPPRFTAKRG--VRAPRMRWTTTLHAHFVHA 191

Query: 113 VELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMFRALKTTTDKPAAS 162
           V+LLGGHERATPKSVLELMDV+DLTLAHVKSHLQM+R +K +T+KP  S
Sbjct: 192 VQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQMYRTIK-STEKPTTS 228

[Close]

BLAST of CmaCh04G022830 vs. Swiss-Prot
Match: KAN4_ARATH (Probable transcription factor KAN4 OS=Arabidopsis thaliana GN=KAN4 PE=1 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.5e-23
Identity = 75/172 (43.60%), Postives = 95/172 (55.23%), Query Frame = 1


Query: 1   MPNIQSFINIQSSSSSSSSSSSSSSFLDLDLSLQISPPNNGVGAVHNHKFNQITNGVWLF 60
           +PN  +   +     SS+SS S SS  DL              +  N+ FN+    +   
Sbjct: 25  LPNYHAGKPLHGGDRSSTSSDSGSSLSDL--------------SHENNFFNKPLLSLGFD 84

Query: 61  NHHNHHHHAFASPLPFLQHQLDPGRSPMARGRCTRAPRMRWTSTLHAQFVHAVELLGGHE 120
           +HH    + F  P  + +       S +   R  RAPRMRWTSTLHA FVHAV+LLGGHE
Sbjct: 85  HHHQRRSNMF-QPQIYGRDFKRSSSSMVGLKRSIRAPRMRWTSTLHAHFVHAVQLLGGHE 144

Query: 121 RATPKSVLELMDVKDLTLAHVKSHLQMFRALKTTTDKPAASPALETVGQQGV 173
           RATPKSVLELM+VKDLTLAHVKSHLQM+R +K T         +E   +Q +
Sbjct: 145 RATPKSVLELMNVKDLTLAHVKSHLQMYRTVKCTDKGSPGEGKVEKEAEQRI 181

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BLAST of CmaCh04G022830 vs. TrEMBL
Match: M4E467_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 4.7e-29
Identity = 83/149 (55.70%), Postives = 101/149 (67.79%), Query Frame = 1


Query: 16  SSSSSSSSSSFLDLDLSLQISPPNNGVGAVHNHKFNQITNGVWLFNHHNHHHHAFASPLP 75
           SSS  +SSS + +   SLQ SP   GV   H++ +  + +      HH+HHHH       
Sbjct: 146 SSSILNSSSGYNNAYRSLQSSPRLKGVPVHHHNHYGVVGSSDSSSPHHHHHHHGM----- 205

Query: 76  FLQHQLDPGRSPMARGRCTRAPRMRWTSTLHAQFVHAVELLGGHERATPKSVLELMDVKD 135
            ++ +  P    M   R  RAPRMRWTS+LHA+FVHAVELLGGHERATPKSVLELMDVKD
Sbjct: 206 -IRSRFLP---KMPTKRSMRAPRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKD 265

Query: 136 LTLAHVKSHLQMFRALKTTTDKPAASPAL 165
           LTLAHVKSHLQM+R +K TT+KPAAS  +
Sbjct: 266 LTLAHVKSHLQMYRTVK-TTNKPAASSGI 284

[Close]

BLAST of CmaCh04G022830 vs. TrEMBL
Match: A0A0A0KTP4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G429440 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 4.7e-29
Identity = 69/75 (92.00%), Postives = 71/75 (94.67%), Query Frame = 1


Query: 88  MARGRCTRAPRMRWTSTLHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQM 147
           MARGR  RAPRMRWTS+LHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQM
Sbjct: 1   MARGRSMRAPRMRWTSSLHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQM 60

Query: 148 FRALKTTTDKPAASP 163
           FRA K TT+KPAASP
Sbjct: 61  FRAHK-TTEKPAASP 74

[Close]

BLAST of CmaCh04G022830 vs. TrEMBL
Match: A0A0E0B2K6_9ORYZ (Uncharacterized protein OS=Oryza glumipatula PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 6.2e-29
Identity = 70/100 (70.00%), Postives = 77/100 (77.00%), Query Frame = 1


Query: 62  HHNHHHHAFASPLPFLQHQLDPGRSPMARGRCTRAPRMRWTSTLHAQFVHAVELLGGHER 121
           HH+HHHH      PF+          +   R  RAPRMRWTSTLHA+FVHAVELLGGHER
Sbjct: 82  HHHHHHHHLHGGQPFVGALASRFMPKLPAKRSMRAPRMRWTSTLHARFVHAVELLGGHER 141

Query: 122 ATPKSVLELMDVKDLTLAHVKSHLQMFRALKTTTDKPAAS 162
           ATPKSVLELMDVKDLTLAHVKSHLQM+R +K +TDKPAAS
Sbjct: 142 ATPKSVLELMDVKDLTLAHVKSHLQMYRTVK-STDKPAAS 180

[Close]

BLAST of CmaCh04G022830 vs. TrEMBL
Match: A0A0D3AJD1_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.4e-28
Identity = 86/166 (51.81%), Postives = 107/166 (64.46%), Query Frame = 1


Query: 17  SSSSSSSSSFLDLDLSLQISPPNNGVGAVHNHKFNQITNGVWLFNHHNHHHHAFASPLPF 76
           SS  +SSSS+ +   SLQ SP   GV   H++ +  + +      HH+HH    +  LP 
Sbjct: 147 SSILNSSSSYNNAYRSLQSSPRLKGVPVHHHNHYGVVGSSDSSSPHHHHHGMIRSRLLP- 206

Query: 77  LQHQLDPGRSPMARGRCTRAPRMRWTSTLHAQFVHAVELLGGHERATPKSVLELMDVKDL 136
                      M   R  RAPRMRWTS+LHA+FVHAVELLGGHERATPKSVLELMDVKDL
Sbjct: 207 ----------KMPTKRSMRAPRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDL 266

Query: 137 TLAHVKSHLQMFRALKTTTDKPAASPALETVGQQGVAMTWMAANHQ 183
           TLAHVKSHLQM+R +K TT+KPAAS   +  G++ + +    A+HQ
Sbjct: 267 TLAHVKSHLQMYRTVK-TTNKPAASS--DGSGEEEMGINGNEAHHQ 298

[Close]

BLAST of CmaCh04G022830 vs. TrEMBL
Match: A0A078HI30_BRANA (BnaC02g06680D protein OS=Brassica napus GN=BnaC02g06680D PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.4e-28
Identity = 86/166 (51.81%), Postives = 107/166 (64.46%), Query Frame = 1


Query: 17  SSSSSSSSSFLDLDLSLQISPPNNGVGAVHNHKFNQITNGVWLFNHHNHHHHAFASPLPF 76
           SS  +SSSS+ +   SLQ SP   GV   H++ +  + +      HH+HH    +  LP 
Sbjct: 147 SSILNSSSSYNNAYRSLQSSPRLKGVPVHHHNHYGVVGSSDSSSPHHHHHGMIRSRLLP- 206

Query: 77  LQHQLDPGRSPMARGRCTRAPRMRWTSTLHAQFVHAVELLGGHERATPKSVLELMDVKDL 136
                      M   R  RAPRMRWTS+LHA+FVHAVELLGGHERATPKSVLELMDVKDL
Sbjct: 207 ----------KMPTKRSMRAPRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDL 266

Query: 137 TLAHVKSHLQMFRALKTTTDKPAASPALETVGQQGVAMTWMAANHQ 183
           TLAHVKSHLQM+R +K TT+KPAAS   +  G++ + +    A+HQ
Sbjct: 267 TLAHVKSHLQMYRTVK-TTNKPAASS--DGSGEEEMGINGNEAHHQ 298

[Close]

BLAST of CmaCh04G022830 vs. TAIR10
Match: AT5G16560.1 (AT5G16560.1 Homeodomain-like superfamily protein)

HSP 1 Score: 138.3 bits (347), Expect = 4.8e-33
Identity = 87/166 (52.41%), Postives = 108/166 (65.06%), Query Frame = 1


Query: 21  SSSSSFLDLDLSLQISPPNNGVGAVHNHKFNQI----TNGVWLFNHHNHHHHAFASPLPF 80
           +SSS + +   SLQ SP   GV   H+H  NQ     ++     +HHNHHHH        
Sbjct: 149 NSSSGYNNAYRSLQSSPRLKGVPLHHHHHHNQYGVVGSSDSSSPHHHNHHHHGM------ 208

Query: 81  LQHQLDPGRSPMARGRCTRAPRMRWTSTLHAQFVHAVELLGGHERATPKSVLELMDVKDL 140
           ++ +  P    M   R  RAPRMRWTS+LHA+FVHAVELLGGHERATPKSVLELMDVKDL
Sbjct: 209 IRSRFLP---KMPTKRSMRAPRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDL 268

Query: 141 TLAHVKSHLQMFRALKTTTDKPAASPALETVGQQGVAMTWMAANHQ 183
           TLAHVKSHLQM+R +K TT+KPAAS   +  G++ + +     +HQ
Sbjct: 269 TLAHVKSHLQMYRTVK-TTNKPAASS--DGSGEEEMGINGNEVHHQ 302

[Close]

BLAST of CmaCh04G022830 vs. TAIR10
Match: AT1G32240.1 (AT1G32240.1 Homeodomain-like superfamily protein)

HSP 1 Score: 127.5 bits (319), Expect = 8.5e-30
Identity = 77/126 (61.11%), Postives = 86/126 (68.25%), Query Frame = 1


Query: 46  HNHKFNQITNGVWLFNHHNHHHHAFASPLPFLQHQLDPGRSPMARGRCTRAPRMRWTSTL 105
           +N+ FN  T+ V   N+HNHHH         L       R P  R    RAPRMRWT+TL
Sbjct: 174 NNNSFN--TSSVSNPNYHNHHHQT-------LNRARFMPRFPAKRSM--RAPRMRWTTTL 233

Query: 106 HAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMFRALKTTTDKPAASPALE 165
           HA+FVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQM+R +K TTDK AAS    
Sbjct: 234 HARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVK-TTDKAAASSGQS 287

Query: 166 TVGQQG 172
            V + G
Sbjct: 294 DVYENG 287

[Close]

BLAST of CmaCh04G022830 vs. TAIR10
Match: AT4G17695.1 (AT4G17695.1 Homeodomain-like superfamily protein)

HSP 1 Score: 120.6 bits (301), Expect = 1.0e-27
Identity = 69/109 (63.30%), Postives = 76/109 (69.72%), Query Frame = 1


Query: 53  ITNGVWLFNHHNHHHHAFASPLPFLQHQLDPGRSPMARGRCTRAPRMRWTSTLHAQFVHA 112
           ITN    FN HN H           Q Q  P R    RG   RAPRMRWT+TLHA FVHA
Sbjct: 132 ITNPNCSFNLHNRHRR---------QAQPQPPRFTAKRG--VRAPRMRWTTTLHAHFVHA 191

Query: 113 VELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMFRALKTTTDKPAAS 162
           V+LLGGHERATPKSVLELMDV+DLTLAHVKSHLQM+R +K +T+KP  S
Sbjct: 192 VQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQMYRTIK-STEKPTTS 228

[Close]

BLAST of CmaCh04G022830 vs. TAIR10
Match: AT5G42630.1 (AT5G42630.1 Homeodomain-like superfamily protein)

HSP 1 Score: 110.2 bits (274), Expect = 1.4e-24
Identity = 75/172 (43.60%), Postives = 95/172 (55.23%), Query Frame = 1


Query: 1   MPNIQSFINIQSSSSSSSSSSSSSSFLDLDLSLQISPPNNGVGAVHNHKFNQITNGVWLF 60
           +PN  +   +     SS+SS S SS  DL              +  N+ FN+    +   
Sbjct: 25  LPNYHAGKPLHGGDRSSTSSDSGSSLSDL--------------SHENNFFNKPLLSLGFD 84

Query: 61  NHHNHHHHAFASPLPFLQHQLDPGRSPMARGRCTRAPRMRWTSTLHAQFVHAVELLGGHE 120
           +HH    + F  P  + +       S +   R  RAPRMRWTSTLHA FVHAV+LLGGHE
Sbjct: 85  HHHQRRSNMF-QPQIYGRDFKRSSSSMVGLKRSIRAPRMRWTSTLHAHFVHAVQLLGGHE 144

Query: 121 RATPKSVLELMDVKDLTLAHVKSHLQMFRALKTTTDKPAASPALETVGQQGV 173
           RATPKSVLELM+VKDLTLAHVKSHLQM+R +K T         +E   +Q +
Sbjct: 145 RATPKSVLELMNVKDLTLAHVKSHLQMYRTVKCTDKGSPGEGKVEKEAEQRI 181

[Close]

BLAST of CmaCh04G022830 vs. TAIR10
Match: AT2G02060.1 (AT2G02060.1 Homeodomain-like superfamily protein)

HSP 1 Score: 88.2 bits (217), Expect = 5.7e-18
Identity = 43/66 (65.15%), Postives = 51/66 (77.27%), Query Frame = 1


Query: 97  PRMRWTSTLHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMFR-ALKTTT 156
           PR+RWT  LH  FVHAVE+LGG  RATPK VL++MDVK LT++HVKSHLQM+R   K T 
Sbjct: 30  PRLRWTPDLHRCFVHAVEILGGQHRATPKLVLKMMDVKGLTISHVKSHLQMYRGGSKLTL 89

Query: 157 DKPAAS 162
           +KP  S
Sbjct: 90  EKPEES 95

[Close]

BLAST of CmaCh04G022830 vs. NCBI nr
Match: gi|659126425|ref|XP_008463176.1| (PREDICTED: probable transcription factor KAN2 [Cucumis melo])

HSP 1 Score: 161.8 bits (408), Expect = 1.2e-36
Identity = 117/217 (53.92%), Postives = 127/217 (58.53%), Query Frame = 1


Query: 1   MPNIQSFINIQSSSSSSSSSSSSSSFLDLDLSLQISPPNNGV--------------GAVH 60
           MPNIQ  INI+SSSSSSSSSSSSSS   LDLSLQISPPN+ +              G+ +
Sbjct: 1   MPNIQRVINIESSSSSSSSSSSSSSTPFLDLSLQISPPNSIINHSTFPTNTIETSNGSTN 60

Query: 61  --------NHKFNQITNGVWLFNHHNHHHHAF-ASPLPFLQHQLDPGRSPM--------- 120
                   N   NQI NGV L +HH    + F   P P + +      SP          
Sbjct: 61  QLFTHHYTNKSLNQINNGVSLDHHHACPINGFPIHPNPSIFYPKQRLTSPAFSGASSSSS 120

Query: 121 -----------------------ARGRCTRAPRMRWTSTLHAQFVHAVELLGGHERATPK 163
                                  ARGR  RAPRMRWTS+LHAQFVHAVELLGGHERATPK
Sbjct: 121 ISTFTLPPPYLHYHLDSDRLSAVARGRSMRAPRMRWTSSLHAQFVHAVELLGGHERATPK 180

[Close]

BLAST of CmaCh04G022830 vs. NCBI nr
Match: gi|672110983|ref|XP_008798315.1| (PREDICTED: probable transcription factor RL9 isoform X4 [Phoenix dactylifera])

HSP 1 Score: 138.7 bits (348), Expect = 1.0e-29
Identity = 80/139 (57.55%), Postives = 98/139 (70.50%), Query Frame = 1


Query: 49  KFNQITNGVWLFNHHNHHHHAFASPLPFLQHQLDPGR--SPMARGRCTRAPRMRWTSTLH 108
           +F  +++    +NHH HHHH +      + H +   R    ++  R  RAPRMRWTSTLH
Sbjct: 6   RFAGLSSDTINYNHHPHHHHQYGIGPLDVSHNMMRSRFMQKLSAKRSMRAPRMRWTSTLH 65

Query: 109 AQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMFRALKTTTDKPAASPA-LE 168
           A+FVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQM+R +K +TDKPAAS A  E
Sbjct: 66  ARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVK-STDKPAASSAQSE 125

Query: 169 TVGQQGVAM-TWMAANHQL 184
             G++  A+ T   + HQL
Sbjct: 126 GSGEEDSALGTGDLSFHQL 143

[Close]

BLAST of CmaCh04G022830 vs. NCBI nr
Match: gi|18418011|ref|NP_568334.1| (transcription repressor KAN1 [Arabidopsis thaliana])

HSP 1 Score: 138.3 bits (347), Expect = 1.4e-29
Identity = 87/166 (52.41%), Postives = 108/166 (65.06%), Query Frame = 1


Query: 21  SSSSSFLDLDLSLQISPPNNGVGAVHNHKFNQI----TNGVWLFNHHNHHHHAFASPLPF 80
           +SSS + +   SLQ SP   GV   H+H  NQ     ++     +HHNHHHH        
Sbjct: 149 NSSSGYNNAYRSLQSSPRLKGVPLHHHHHHNQYGVVGSSDSSSPHHHNHHHHGM------ 208

Query: 81  LQHQLDPGRSPMARGRCTRAPRMRWTSTLHAQFVHAVELLGGHERATPKSVLELMDVKDL 140
           ++ +  P    M   R  RAPRMRWTS+LHA+FVHAVELLGGHERATPKSVLELMDVKDL
Sbjct: 209 IRSRFLP---KMPTKRSMRAPRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDL 268

Query: 141 TLAHVKSHLQMFRALKTTTDKPAASPALETVGQQGVAMTWMAANHQ 183
           TLAHVKSHLQM+R +K TT+KPAAS   +  G++ + +     +HQ
Sbjct: 269 TLAHVKSHLQMYRTVK-TTNKPAASS--DGSGEEEMGINGNEVHHQ 302

[Close]

BLAST of CmaCh04G022830 vs. NCBI nr
Match: gi|727642417|ref|XP_010492568.1| (PREDICTED: transcription repressor KAN1 [Camelina sativa])

HSP 1 Score: 137.1 bits (344), Expect = 3.1e-29
Identity = 87/166 (52.41%), Postives = 105/166 (63.25%), Query Frame = 1


Query: 21  SSSSSFLDLDLSLQISPPNNGVGAVHNHKFNQI----TNGVWLFNHHNHHHHAFASPLPF 80
           +SSS + +   SLQ SP   GV   H+H  N      ++     +HHNHHHH       F
Sbjct: 165 NSSSGYNNAYRSLQSSPRLKGVPLHHHHHHNHYGIVGSSDSSSPHHHNHHHHHGMIRSRF 224

Query: 81  LQHQLDPGRSPMARGRCTRAPRMRWTSTLHAQFVHAVELLGGHERATPKSVLELMDVKDL 140
           L          M   R  RAPRMRWTS+LHA+FVHAVELLGGHERATPKSVLELMDVKDL
Sbjct: 225 LPK--------MPTKRSMRAPRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDL 284

Query: 141 TLAHVKSHLQMFRALKTTTDKPAASPALETVGQQGVAMTWMAANHQ 183
           TLAHVKSHLQM+R +K TT+KPAAS   +  G++ + +     +HQ
Sbjct: 285 TLAHVKSHLQMYRTVK-TTNKPAASS--DGSGEEEMGINGNEVHHQ 319

[Close]

BLAST of CmaCh04G022830 vs. NCBI nr
Match: gi|672110977|ref|XP_008798291.1| (PREDICTED: transcription repressor KAN1-like isoform X1 [Phoenix dactylifera])

HSP 1 Score: 137.1 bits (344), Expect = 3.1e-29
Identity = 94/179 (52.51%), Postives = 114/179 (63.69%), Query Frame = 1


Query: 12  SSSSSSSSSSSSSSFLDLDLSLQ---ISPPNNGVGAVHNHKFNQITNGVWLFNHHNHHHH 71
           S  SS SSSS  SS LD   S     ++PP          +F  +++    +NHH HHHH
Sbjct: 144 SVPSSPSSSSGYSSNLDTAASFLHPVMAPPT---------RFAGLSSDTINYNHHPHHHH 203

Query: 72  AFASPLPFLQHQLDPGR--SPMARGRCTRAPRMRWTSTLHAQFVHAVELLGGHERATPKS 131
            +      + H +   R    ++  R  RAPRMRWTSTLHA+FVHAVELLGGHERATPKS
Sbjct: 204 QYGIGPLDVSHNMMRSRFMQKLSAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKS 263

Query: 132 VLELMDVKDLTLAHVKSHLQMFRALKTTTDKPAASPA-LETVGQQGVAM-TWMAANHQL 184
           VLELMDVKDLTLAHVKSHLQM+R +K +TDKPAAS A  E  G++  A+ T   + HQL
Sbjct: 264 VLELMDVKDLTLAHVKSHLQMYRTVK-STDKPAASSAQSEGSGEEDSALGTGDLSFHQL 312

The following BLAST results are available for this feature:

BLAST of CmaCh04G022830 vs. Swiss-Prot


Match Name	E-value	Identity	Description
KAN1_ARATH	8.6e-32	52.41	Transcription repressor KAN1 OS=Arabidopsis thaliana GN=KAN1 PE=1 SV=1	[more]
ROLL9_ORYSJ	1.8e-29	69.70	Probable transcription factor RL9 OS=Oryza sativa subsp. japonica GN=RL9 PE=2 SV...	[more]
KAN2_ARATH	1.5e-28	61.11	Probable transcription factor KAN2 OS=Arabidopsis thaliana GN=KAN2 PE=2 SV=1	[more]
KAN3_ARATH	1.8e-26	63.30	Probable transcription factor KAN3 OS=Arabidopsis thaliana GN=KAN3 PE=2 SV=1	[more]
KAN4_ARATH	2.5e-23	43.60	Probable transcription factor KAN4 OS=Arabidopsis thaliana GN=KAN4 PE=1 SV=1	[more]

BLAST of CmaCh04G022830 vs. TrEMBL


Match Name	E-value	Identity	Description
M4E467_BRARP	4.7e-29	55.70	Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1	[more]
A0A0A0KTP4_CUCSA	4.7e-29	92.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G429440 PE=4 SV=1	[more]
A0A0E0B2K6_9ORYZ	6.2e-29	70.00	Uncharacterized protein OS=Oryza glumipatula PE=4 SV=1	[more]
A0A0D3AJD1_BRAOL	1.4e-28	51.81	Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1	[more]
A0A078HI30_BRANA	1.4e-28	51.81	BnaC02g06680D protein OS=Brassica napus GN=BnaC02g06680D PE=4 SV=1	[more]

BLAST of CmaCh04G022830 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G16560.1	4.8e-33	52.41	Homeodomain-like superfamily protein	[more]
AT1G32240.1	8.5e-30	61.11	Homeodomain-like superfamily protein	[more]
AT4G17695.1	1.0e-27	63.30	Homeodomain-like superfamily protein	[more]
AT5G42630.1	1.4e-24	43.60	Homeodomain-like superfamily protein	[more]
AT2G02060.1	5.7e-18	65.15	Homeodomain-like superfamily protein	[more]

BLAST of CmaCh04G022830 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659126425\|ref\|XP_008463176.1\|	1.2e-36	53.92	PREDICTED: probable transcription factor KAN2 [Cucumis melo]	[more]
gi\|672110983\|ref\|XP_008798315.1\|	1.0e-29	57.55	PREDICTED: probable transcription factor RL9 isoform X4 [Phoenix dactylifera]	[more]
gi\|18418011\|ref\|NP_568334.1\|	1.4e-29	52.41	transcription repressor KAN1 [Arabidopsis thaliana]	[more]
gi\|727642417\|ref\|XP_010492568.1\|	3.1e-29	52.41	PREDICTED: transcription repressor KAN1 [Camelina sativa]	[more]
gi\|672110977\|ref\|XP_008798291.1\|	3.1e-29	52.51	PREDICTED: transcription repressor KAN1-like isoform X1 [Phoenix dactylifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001005	SANT/Myb
IPR006447	Myb_dom_plants
IPR009057	Homeobox-like_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010158	abaxial cell fate specification
biological_process	GO:0009845	seed germination
biological_process	GO:0048481	plant ovule development
biological_process	GO:0009944	polarity specification of adaxial/abaxial axis
biological_process	GO:0009956	radial pattern formation
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0010051	xylem and phloem pattern formation
biological_process	GO:0008150	biological_process
biological_process	GO:0009887	animal organ morphogenesis
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0009737	response to abscisic acid
biological_process	GO:0010162	seed dormancy process
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G022830.1	CmaCh04G022830.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 98..148 score: 1.
IPR006447	Myb domain, plants	TIGRFAMs	TIGR01557	TIGR01557	coord: 97..150 score: 4.0
IPR009057	Homeodomain-like	GENE3D	G3DSA:1.10.10.60		coord: 95..150 score: 4.3
IPR009057	Homeodomain-like	unknown	SSF46689	Homeodomain-like	coord: 93..150 score: 1.67
None	No IPR available	PANTHER	PTHR31496	FAMILY NOT NAMED	coord: 83..162 score: 4.0E-54coord: 9..31 score: 4.0
None	No IPR available	PANTHER	PTHR31496:SF3	SUBFAMILY NOT NAMED	coord: 83..162 score: 4.0E-54coord: 9..31 score: 4.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G022830	Cla009148	Watermelon (97103) v1	cmawmB711
CmaCh04G022830	Csa5G429440	Cucumber (Chinese Long) v2	cmacuB750
CmaCh04G022830	MELO3C025116	Melon (DHL92) v3.5.1	cmameB636
CmaCh04G022830	ClCG01G008730	Watermelon (Charleston Gray)	cmawcgB634
CmaCh04G022830	CSPI05G15270	Wild cucumber (PI 183967)	cmacpiB759
CmaCh04G022830	CmoCh15G007780	Cucurbita moschata (Rifu)	cmacmoB693
CmaCh04G022830	CmoCh04G023860	Cucurbita moschata (Rifu)	cmacmoB729
CmaCh04G022830	Lsi09G009120	Bottle gourd (USVL1VR-Ls)	cmalsiB622
CmaCh04G022830	Cp4.1LG01g19850	Cucurbita pepo (Zucchini)	cmacpeB721
CmaCh04G022830	MELO3C025116.2	Melon (DHL92) v3.6.1	cmamedB722
CmaCh04G022830	CsaV3_5G024310	Cucumber (Chinese Long) v3	cmacucB0887
CmaCh04G022830	Cla97C01G008960	Watermelon (97103) v2	cmawmbB705
CmaCh04G022830	Bhi12G001052	Wax gourd	cmawgoB0827
CmaCh04G022830	CsGy5G015080	Cucumber (Gy14) v2	cgybcmaB676
CmaCh04G022830	Carg01453	Silver-seed gourd	carcmaB1150
CmaCh04G022830	Carg18279	Silver-seed gourd	carcmaB0738

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh04G022830	CmaCh15G007530	Cucurbita maxima (Rimu)	cmacmaB325

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G022830	Cucumber (Gy14) v1	cgycmaB0749
CmaCh04G022830	Cucurbita pepo (Zucchini)	cmacpeB705