CsaV3_7G023660 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_7G023660
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	protein RADIALIS-like 2
Location	chr7 : 12696375 .. 12697151 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TATTCCTTCCATTTTTTGTTCCTCTTTCCAAAACCCATTTCTTTTGTTTTGGCAATTCAAAGCTCAATACTAACAAAAGTAATGGCTTCAATGTCCTCTCATGGCTCAAATGCATGGACTAAAATGCAAAACAAGACATTTGAAATGGCTTTGGCTGAATATGATCAAGACACTCCTGAACGATGGGTGAATGTTGCTAAGGCTGTTGGTGAAAAAACTGAAGAGGAAGTCAAGATGCATTACCAACTTCTCCTTCATGATGTCAAACATATTGAGTCTGGCAATGTCCCTTTTCCCTATCCAACGACATCGAGCAATGATGATTTGCCAAGGAAACGAGGTGTCTTGTTTCTCCTTTCTCCTTTCTCGTTTTCAATCTCTCTATGAAACAAATTTTGTACCTGCTCTTGGTTTCTTGTTTCCCATTTATTCGAAAATTACGTGTTTTCAAAATTGTGAACACGGTTTTTGGCAACAGTAAAAACCAAATCTTCTTGTTTTCCCATCGCTTTATCTCGTTTCTTATATCATTTTATTTTTACTTCTAAATTGCATAAGAAACTGTACATTTTTTATTTTATATATACCAAGTTGATATACCAAGTTCTCCTTCGATTATATTTATTTATTTGTTTTGTTTTTCCTCTCAGGATGATTAAGAACAAACTCTTCATTGATCGAGCTGGTGCAATACTTTGAAGAATATAGAAGAAGAAAGAACCATATGCCTTTAAATACAGTTTTACTACTGATGAATGAATAAATAAGAGTTTAATC

mRNA sequence

ATGGCTTCAATGTCCTCTCATGGCTCAAATGCATGGACTAAAATGCAAAACAAGACATTTGAAATGGCTTTGGCTGAATATGATCAAGACACTCCTGAACGATGGGTGAATGTTGCTAAGGCTGTTGGTGAAAAAACTGAAGAGGAAGTCAAGATGCATTACCAACTTCTCCTTCATGATGTCAAACATATTGAGTCTGGCAATGTCCCTTTTCCCTATCCAACGACATCGAGCAATGATGATTTGCCAAGGAAACGAGGATGA

Coding sequence (CDS)

ATGGCTTCAATGTCCTCTCATGGCTCAAATGCATGGACTAAAATGCAAAACAAGACATTTGAAATGGCTTTGGCTGAATATGATCAAGACACTCCTGAACGATGGGTGAATGTTGCTAAGGCTGTTGGTGAAAAAACTGAAGAGGAAGTCAAGATGCATTACCAACTTCTCCTTCATGATGTCAAACATATTGAGTCTGGCAATGTCCCTTTTCCCTATCCAACGACATCGAGCAATGATGATTTGCCAAGGAAACGAGGATGA

Protein sequence

MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKMHYQLLLHDVKHIESGNVPFPYPTTSSNDDLPRKRG

Homology

[Close]

BLAST of CsaV3_7G023660 vs. NCBI nr
Match: XP_011659078.1 (PREDICTED: protein RADIALIS-like 2 [Cucumis sativus])

HSP 1 Score: 182.2 bits (461), Expect = 7.7e-43
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKMHYQLLLHD 60
          MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKMHYQLLLHD
Sbjct: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKMHYQLLLHD 60

Query: 61 VKHIESGNVPFPYPTTSSNDDLPRKRG 88
          VKHIESGNVPFPYPTTSSNDDLPRKRG
Sbjct: 61 VKHIESGNVPFPYPTTSSNDDLPRKRG 87

[Close]

BLAST of CsaV3_7G023660 vs. NCBI nr
Match: XP_008447294.1 (PREDICTED: protein RADIALIS-like 2 [Cucumis melo])

HSP 1 Score: 175.6 bits (444), Expect = 7.2e-41
Identity = 84/87 (96.55%), Postives = 85/87 (97.70%), Query Frame = 0


Query: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKMHYQLLLHD 60
          MASMSSHGSNAWTKMQNKTFE ALAEYDQDTPERWVNVAKAVGEKTEEEVK HYQLLLHD
Sbjct: 1  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD 60

Query: 61 VKHIESGNVPFPYPTTSSNDDLPRKRG 88
          VKHIESGNVPFPYPTTSS+DDLPRKRG
Sbjct: 61 VKHIESGNVPFPYPTTSSDDDLPRKRG 87

[Close]

BLAST of CsaV3_7G023660 vs. NCBI nr
Match: XP_022952273.1 (protein RADIALIS-like 1 [Cucurbita moschata] >XP_023511439.1 protein RADIALIS-like 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 151.4 bits (381), Expect = 1.5e-33
Identity = 75/87 (86.21%), Postives = 78/87 (89.66%), Query Frame = 0


Query: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKMHYQLLLHD 60
          MASMSS GSNAWT MQNK FE ALA YDQDTPERW+NVAKAVGEKTEEEVK HYQLLLHD
Sbjct: 1  MASMSSRGSNAWTPMQNKAFEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLLHD 60

Query: 61 VKHIESGNVPFPYPTTSSNDDLPRKRG 88
          VKHIESGNVPFPY   +S+DDLPRKRG
Sbjct: 61 VKHIESGNVPFPY--RNSSDDLPRKRG 85

[Close]

BLAST of CsaV3_7G023660 vs. NCBI nr
Match: XP_022972527.1 (protein RADIALIS-like 1 [Cucurbita maxima])

HSP 1 Score: 149.8 bits (377), Expect = 4.3e-33
Identity = 74/87 (85.06%), Postives = 77/87 (88.51%), Query Frame = 0


Query: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKMHYQLLLHD 60
          MASMSS GSNAWT MQNK FE ALA YDQDTPERW+NVAK VGEKTEEEVK HYQLLLHD
Sbjct: 1  MASMSSRGSNAWTPMQNKAFEKALAVYDQDTPERWLNVAKVVGEKTEEEVKRHYQLLLHD 60

Query: 61 VKHIESGNVPFPYPTTSSNDDLPRKRG 88
          VKHIESGNVPFPY   +S+DDLPRKRG
Sbjct: 61 VKHIESGNVPFPY--RNSSDDLPRKRG 85

[Close]

BLAST of CsaV3_7G023660 vs. NCBI nr
Match: XP_022136148.1 (protein RADIALIS-like 1 [Momordica charantia])

HSP 1 Score: 141.4 bits (355), Expect = 1.5e-30
Identity = 70/87 (80.46%), Postives = 76/87 (87.36%), Query Frame = 0


Query: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKMHYQLLLHD 60
          MASMSS GS+AWT MQNK FE ALA YDQDTPERW+NVAKAVGEKTEEEVK HYQLL+ D
Sbjct: 1  MASMSSRGSSAWTAMQNKAFEEALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLVED 60

Query: 61 VKHIESGNVPFPYPTTSSNDDLPRKRG 88
          VKHIESG+VPFPY  TS++DD P KRG
Sbjct: 61 VKHIESGHVPFPY-QTSNDDDFPTKRG 86

[Close]

BLAST of CsaV3_7G023660 vs. TAIR10
Match: AT2G21650.1 (Homeodomain-like superfamily protein)

HSP 1 Score: 104.0 bits (258), Expect = 4.9e-23
Identity = 52/85 (61.18%), Postives = 63/85 (74.12%), Query Frame = 0


Query: 3  SMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKMHYQLLLHDVK 62
          SMSS+GS +WT  QNK FE ALA YDQDTP+RW NVA+AVG KT EE K  Y LL+ D++
Sbjct: 5  SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIE 64

Query: 63 HIESGNVPFP-YPTTSSNDDLPRKR 87
           IE+G+VPFP Y TT+ N +  R R
Sbjct: 65 SIENGHVPFPDYKTTTGNSNRGRLR 89

[Close]

BLAST of CsaV3_7G023660 vs. TAIR10
Match: AT4G39250.1 (RAD-like 1)

HSP 1 Score: 101.3 bits (251), Expect = 3.1e-22
Identity = 49/76 (64.47%), Postives = 56/76 (73.68%), Query Frame = 0


Query: 2  ASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKMHYQLLLHDV 61
          +SMSS  S +WT  QNK FE ALA YDQDTP RW NVAK VG KT EEVK HY+LL+ D+
Sbjct: 4  SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDI 63

Query: 62 KHIESGNVPFPYPTTS 78
            IE+G+VPFP   TS
Sbjct: 64 NSIENGHVPFPNYRTS 79

[Close]

BLAST of CsaV3_7G023660 vs. TAIR10
Match: AT1G75250.1 (RAD-like 6)

HSP 1 Score: 90.9 bits (224), Expect = 4.3e-19
Identity = 48/80 (60.00%), Postives = 56/80 (70.00%), Query Frame = 0


Query: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKMHYQLLLHD 60
          MAS S    + WT  QNK FE ALA YD+DTP+RW NVAKAVG KT EEVK HY +L+ D
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 VKHIESGNVPFP-YPTTSSN 80
          + +IE+G VP P Y T  SN
Sbjct: 61 LINIETGRVPLPNYKTFESN 80

[Close]

BLAST of CsaV3_7G023660 vs. TAIR10
Match: AT1G19510.1 (RAD-like 5)

HSP 1 Score: 89.4 bits (220), Expect = 1.2e-18
Identity = 43/72 (59.72%), Postives = 52/72 (72.22%), Query Frame = 0


Query: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKMHYQLLLHD 60
          MAS S   S++WT  QNK FE ALA YD+DTP+RW NVAKAVG K+ EEVK HY +L+ D
Sbjct: 1  MASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVED 60

Query: 61 VKHIESGNVPFP 73
          + +IE   VP P
Sbjct: 61 LMNIEQDLVPLP 72

[Close]

BLAST of CsaV3_7G023660 vs. TAIR10
Match: AT2G18328.1 (RAD-like 4)

HSP 1 Score: 85.1 bits (209), Expect = 2.3e-17
Identity = 42/72 (58.33%), Postives = 55/72 (76.39%), Query Frame = 0


Query: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKMHYQLLLHD 60
          MAS SS  +++WT  ++K FEMALA++D+DTP+RW  +A+AVG K+ EEVK HY+LLL D
Sbjct: 1  MAS-SSMSTSSWTAREDKQFEMALAKFDKDTPDRWQKIARAVGGKSTEEVKRHYELLLRD 60

Query: 61 VKHIESGNVPFP 73
          V  IESG  P P
Sbjct: 61 VNDIESGRYPQP 71

[Close]

BLAST of CsaV3_7G023660 vs. Swiss-Prot
Match: sp|Q9SIJ5|RADL2_ARATH (Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 8.8e-22
Identity = 52/85 (61.18%), Postives = 63/85 (74.12%), Query Frame = 0


Query: 3  SMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKMHYQLLLHDVK 62
          SMSS+GS +WT  QNK FE ALA YDQDTP+RW NVA+AVG KT EE K  Y LL+ D++
Sbjct: 5  SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIE 64

Query: 63 HIESGNVPFP-YPTTSSNDDLPRKR 87
           IE+G+VPFP Y TT+ N +  R R
Sbjct: 65 SIENGHVPFPDYKTTTGNSNRGRLR 89

[Close]

BLAST of CsaV3_7G023660 vs. Swiss-Prot
Match: sp|F4JVB8|RADL1_ARATH (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 5.7e-21
Identity = 49/76 (64.47%), Postives = 56/76 (73.68%), Query Frame = 0


Query: 2  ASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKMHYQLLLHDV 61
          +SMSS  S +WT  QNK FE ALA YDQDTP RW NVAK VG KT EEVK HY+LL+ D+
Sbjct: 4  SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDI 63

Query: 62 KHIESGNVPFPYPTTS 78
            IE+G+VPFP   TS
Sbjct: 64 NSIENGHVPFPNYRTS 79

[Close]

BLAST of CsaV3_7G023660 vs. Swiss-Prot
Match: sp|Q58FS3|RAD_ANTMA (Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 9.1e-19
Identity = 48/87 (55.17%), Postives = 59/87 (67.82%), Query Frame = 0


Query: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKMHYQLLLHD 60
          MAS    G   W+  +NK FE ALA YD+DTP+RW NVA+AV  +T EEVK HY++L+ D
Sbjct: 1  MASTRGSG-RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVED 60

Query: 61 VKHIESGNVPFP-YPTTSSNDDLPRKR 87
          +K+IESG VPFP Y TT  N     KR
Sbjct: 61 IKYIESGKVPFPNYRTTGGNMKTDEKR 86

[Close]

BLAST of CsaV3_7G023660 vs. Swiss-Prot
Match: sp|Q6NNN0|RADL3_ARATH (Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.0e-18
Identity = 45/80 (56.25%), Postives = 57/80 (71.25%), Query Frame = 0


Query: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKMHYQLLLHD 60
          MAS S   S +WT+ +NK FE ALA YDQDTP+RW NVA+AVG K+ EEV+ HY+LL+ D
Sbjct: 1  MASNSMSSSASWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELLIRD 60

Query: 61 VKHIESGNVPFPYPTTSSND 81
          V  IESG  P P   ++ N+
Sbjct: 61 VNDIESGRYPHPNYRSNGNN 80

[Close]

BLAST of CsaV3_7G023660 vs. Swiss-Prot
Match: sp|Q1A173|RADL6_ARATH (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 7.7e-18
Identity = 48/80 (60.00%), Postives = 56/80 (70.00%), Query Frame = 0


Query: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKMHYQLLLHD 60
          MAS S    + WT  QNK FE ALA YD+DTP+RW NVAKAVG KT EEVK HY +L+ D
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 VKHIESGNVPFP-YPTTSSN 80
          + +IE+G VP P Y T  SN
Sbjct: 61 LINIETGRVPLPNYKTFESN 80

[Close]

BLAST of CsaV3_7G023660 vs. TrEMBL
Match: tr|A0A1S3BHZ4|A0A1S3BHZ4_CUCME (protein RADIALIS-like 2 OS=Cucumis melo OX=3656 GN=LOC103489762 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 4.8e-41
Identity = 84/87 (96.55%), Postives = 85/87 (97.70%), Query Frame = 0


Query: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKMHYQLLLHD 60
          MASMSSHGSNAWTKMQNKTFE ALAEYDQDTPERWVNVAKAVGEKTEEEVK HYQLLLHD
Sbjct: 1  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD 60

Query: 61 VKHIESGNVPFPYPTTSSNDDLPRKRG 88
          VKHIESGNVPFPYPTTSS+DDLPRKRG
Sbjct: 61 VKHIESGNVPFPYPTTSSDDDLPRKRG 87

[Close]

BLAST of CsaV3_7G023660 vs. TrEMBL
Match: tr|A0A1S3BGF6|A0A1S3BGF6_CUCME (protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489576 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 7.4e-26
Identity = 59/79 (74.68%), Postives = 65/79 (82.28%), Query Frame = 0


Query: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKMHYQLLLHD 60
          MASMS+HGS  WT  QNK FE ALA YD+DTP+RW+NVAKA+G KTEEEVK HYQLLL D
Sbjct: 1  MASMSAHGSGVWTAKQNKAFEKALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VKHIESGNVPFPYPTTSSN 80
          VKHIESG VPFPY T+  N
Sbjct: 61 VKHIESGKVPFPYRTSRGN 79

[Close]

BLAST of CsaV3_7G023660 vs. TrEMBL
Match: tr|A0A0A0K344|A0A0A0K344_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G169070 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 2.2e-25
Identity = 58/79 (73.42%), Postives = 66/79 (83.54%), Query Frame = 0


Query: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKMHYQLLLHD 60
          MAS+S+HGS  WT  QNK FE ALA YD+DTP+RW+NVAKA+G KTEEEVK HYQLLL D
Sbjct: 1  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VKHIESGNVPFPYPTTSSN 80
          VKHIESG VPFPY ++ SN
Sbjct: 61 VKHIESGKVPFPYRSSRSN 79

[Close]

BLAST of CsaV3_7G023660 vs. TrEMBL
Match: tr|A0A0A0K3K0|A0A0A0K3K0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G168060 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 8.2e-25
Identity = 56/73 (76.71%), Postives = 64/73 (87.67%), Query Frame = 0


Query: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKMHYQLLLHD 60
          MASMS+HGS+AWT ++NK FE ALA YD+DTPERW+NVAKA+G KTEEEVK HYQLLL D
Sbjct: 1  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VKHIESGNVPFPY 74
          V HIESG +PFPY
Sbjct: 61 VNHIESGQIPFPY 73

[Close]

BLAST of CsaV3_7G023660 vs. TrEMBL
Match: tr|A0A1S3BFW6|A0A1S3BFW6_CUCME (protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489573 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.0e-23
Identity = 57/80 (71.25%), Postives = 62/80 (77.50%), Query Frame = 0


Query: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKMHYQLLLHD 60
          MASMSSHGS  WT  QNK FE ALA YDQDTP+RW+NVAKAVG KT EEVK HY LL+ D
Sbjct: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKHIESGNVPFPYPTTSSND 81
          VK IESG VPFPY T+   +
Sbjct: 61 VKFIESGQVPFPYRTSGDGN 80

The following BLAST results are available for this feature:

BLAST of CsaV3_7G023660 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011659078.1	7.7e-43	100.00	PREDICTED: protein RADIALIS-like 2 [Cucumis sativus]	[more]
XP_008447294.1	7.2e-41	96.55	PREDICTED: protein RADIALIS-like 2 [Cucumis melo]	[more]
XP_022952273.1	1.5e-33	86.21	protein RADIALIS-like 1 [Cucurbita moschata] >XP_023511439.1 protein RADIALIS-li...	[more]
XP_022972527.1	4.3e-33	85.06	protein RADIALIS-like 1 [Cucurbita maxima]	[more]
XP_022136148.1	1.5e-30	80.46	protein RADIALIS-like 1 [Momordica charantia]	[more]

BLAST of CsaV3_7G023660 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G21650.1	4.9e-23	61.18	Homeodomain-like superfamily protein	[more]
AT4G39250.1	3.1e-22	64.47	RAD-like 1	[more]
AT1G75250.1	4.3e-19	60.00	RAD-like 6	[more]
AT1G19510.1	1.2e-18	59.72	RAD-like 5	[more]
AT2G18328.1	2.3e-17	58.33	RAD-like 4	[more]

BLAST of CsaV3_7G023660 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SIJ5\|RADL2_ARATH	8.8e-22	61.18	Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1	[more]
sp\|F4JVB8\|RADL1_ARATH	5.7e-21	64.47	Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1	[more]
sp\|Q58FS3\|RAD_ANTMA	9.1e-19	55.17	Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1	[more]
sp\|Q6NNN0\|RADL3_ARATH	2.0e-18	56.25	Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1	[more]
sp\|Q1A173\|RADL6_ARATH	7.7e-18	60.00	Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1	[more]

BLAST of CsaV3_7G023660 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BHZ4\|A0A1S3BHZ4_CUCME	4.8e-41	96.55	protein RADIALIS-like 2 OS=Cucumis melo OX=3656 GN=LOC103489762 PE=4 SV=1	[more]
tr\|A0A1S3BGF6\|A0A1S3BGF6_CUCME	7.4e-26	74.68	protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489576 PE=4 SV=1	[more]
tr\|A0A0A0K344\|A0A0A0K344_CUCSA	2.2e-25	73.42	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G169070 PE=4 SV=1	[more]
tr\|A0A0A0K3K0\|A0A0A0K3K0_CUCSA	8.2e-25	76.71	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G168060 PE=4 SV=1	[more]
tr\|A0A1S3BFW6\|A0A1S3BFW6_CUCME	2.0e-23	71.25	protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489573 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR009057	Homeobox-like_sf
IPR017877	Myb-like_dom
IPR001005	SANT/Myb

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G023660.1	CsaV3_7G023660.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 8..60 e-value: 5.3E-7 score: 39.3
IPR001005	SANT/Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 10..57 e-value: 1.3E-5 score: 25.1
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 11..58 e-value: 7.70636E-6 score: 37.9402
None	No IPR available	GENE3D	G3DSA:1.10.10.60		coord: 3..71 e-value: 5.3E-19 score: 69.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..87
None	No IPR available	PANTHER	PTHR43952:SF14	PROTEIN RADIALIS-LIKE 1-RELATED	coord: 1..80
None	No IPR available	PANTHER	PTHR43952	FAMILY NOT NAMED	coord: 1..80
IPR017877	Myb-like domain	PROSITE	PS50090	MYB_LIKE	coord: 4..58 score: 6.121
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	SSF46689	Homeodomain-like	coord: 10..66

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_7G023660	CSPI07G11740	Wild cucumber (PI 183967)	cpicucB414
CsaV3_7G023660	Cucsa.240590	Cucumber (Gy14) v1	cgycucB367
CsaV3_7G023660	CmaCh11G010940	Cucurbita maxima (Rimu)	cmacucB0178
CsaV3_7G023660	CmaCh19G006700	Cucurbita maxima (Rimu)	cmacucB0641
CsaV3_7G023660	CmoCh11G011190	Cucurbita moschata (Rifu)	cmocucB0163
CsaV3_7G023660	CmoCh19G006820	Cucurbita moschata (Rifu)	cmocucB0625
CsaV3_7G023660	Cp4.1LG15g05490	Cucurbita pepo (Zucchini)	cpecucB0325
CsaV3_7G023660	Cp4.1LG04g00900	Cucurbita pepo (Zucchini)	cpecucB0871
CsaV3_7G023660	CsGy7G010930	Cucumber (Gy14) v2	cgybcucB347
CsaV3_7G023660	Carg24682	Silver-seed gourd	carcucB0202
CsaV3_7G023660	Carg19405	Silver-seed gourd	carcucB0348
CsaV3_7G023660	Cla015917	Watermelon (97103) v1	cucwmB636
CsaV3_7G023660	MELO3C012500	Melon (DHL92) v3.5.1	cucmeB551
CsaV3_7G023660	ClCG02G004920	Watermelon (Charleston Gray)	cucwcgB573
CsaV3_7G023660	Lsi11G011060	Bottle gourd (USVL1VR-Ls)	cuclsiB531
CsaV3_7G023660	MELO3C012500.2	Melon (DHL92) v3.6.1	cucmedB539
CsaV3_7G023660	Cla97C11G211150	Watermelon (97103) v2	cucwmbB541
CsaV3_7G023660	Cla97C02G031880	Watermelon (97103) v2	cucwmbB551
CsaV3_7G023660	Bhi05G001102	Wax gourd	cucwgoB689
CsaV3_7G023660	Bhi10G001619	Wax gourd	cucwgoB709

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_7G023660	Cucurbita maxima (Rimu)	cmacucB0594
CsaV3_7G023660	Cucurbita moschata (Rifu)	cmocucB0581