CmoCh11G011190 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh11G011190
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	(DNA binding protein) (MYB-related transcription factor)
Location	Cmo_Chr11 : 6304241 .. 6305484 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCCCTTGCAACCTTTTGAGCCCTTTCTTCCTTATTTTTATACTATTATCATGGCTTCCATGTCTTCCCATGGCTCTGCTTCATGGACTGCAAAGCAAAACAAAGCCTTTGAGGAGGCTTTGGCACGGTATGACCGAGACACACCTGACCGATGGCTCAATGTTGCAAGAGCTGTTGGTGGCAAAACTGAAGAGGAGGTCAAAAGGCACTACCAACTTCTTGTGGAGGATGTCAAGTTCATTGAGTCGGGCCGTGTTCCCTACCCGTATCGAAACTCGGGAGCCAGTAACTAAGGTAACGTGATCATTGATGGCAAAAATATGCATACAAAAAGAATCATGATAATGTCGTTACCAAAAACACTCGTTTATACACCCTGGTCAACAGTAACTTCTCGTAACCTTCAAATGGCTCAAAAGTTTTAGTAGAAGTCCGTATCTATTTATTGCAATAGAAACAGGTTAATGAAAGTACATAAAACCAAAATATCCTACTCATTAGGTTCTCCTCATTTATATCTAAGTTTTGTTCTTGATGATGTAGAACGTTTACATCATCATACCATCTTTGAAATTTATTTTCTCTCGATCAATATCTGATCATAATCTATAATAGTAATGTAGCTAAACGTATCGATCAAAGTAGAAGGTCATACGTTCATCCGTTCGTCCATGTTTATACAAAATAGTTGGTTAGTTGAGTTCAAGAAACCCTAGCCACACCATTGGCTTGTAAATGATCCCTTAGCTAGCTTGAAACGGATGTCATTATACAGTTTGTAAGTATATGAGCAGAGGAATGTCATTATCGATGAATAGAGGCCCCACACTTGGGCTGGATTCTTGTGTCAATGAATGGCTATATGTTTCAATAAAAAAACAATATAACTCATCGTCTTGTAAGCTTTTTGAAAGCCACCCTTCTTGTTCTTCCAAACTAAAGCTGCACCAATGTCTCAGCATTGGCTCTCACACCCCAACAAAAACAGGAATAATATTATATTACTGTTCATGTTAGATTGTAACCCAATGATTTTTTTTTAATTTTTTTAATTTTTAATTTCAGAAACAAGAAGCTCCATTGATCCATTGATCATGATCGTGAAGTAATAGAAGAATAAAAGGATTGGAGGAAGAACCATTTGCTAATGATTTGAAGAGTTATAATATCTATATTTCATTTGATATTCGTGTTAAGCTTGAAGTTAGTTTATTAATTCCATCCACTTTCAATTTTGAGAGGAA

mRNA sequence

TTCCCTTGCAACCTTTTGAGCCCTTTCTTCCTTATTTTTATACTATTATCATGGCTTCCATGTCTTCCCATGGCTCTGCTTCATGGACTGCAAAGCAAAACAAAGCCTTTGAGGAGGCTTTGGCACGGTATGACCGAGACACACCTGACCGATGGCTCAATGTTGCAAGAGCTGTTGGTGGCAAAACTGAAGAGGAGGTCAAAAGGCACTACCAACTTCTTGTGGAGGATGTCAAGTTCATTGAGTCGGGCCGTGTTCCCTACCCGTATCGAAACTCGGGAGCCAGTAACTAAAAACAAGAAGCTCCATTGATCCATTGATCATGATCGTGAAGTAATAGAAGAATAAAAGGATTGGAGGAAGAACCATTTGCTAATGATTTGAAGAGTTATAATATCTATATTTCATTTGATATTCGTGTTAAGCTTGAAGTTAGTTTATTAATTCCATCCACTTTCAATTTTGAGAGGAA

Coding sequence (CDS)

ATGGCTTCCATGTCTTCCCATGGCTCTGCTTCATGGACTGCAAAGCAAAACAAAGCCTTTGAGGAGGCTTTGGCACGGTATGACCGAGACACACCTGACCGATGGCTCAATGTTGCAAGAGCTGTTGGTGGCAAAACTGAAGAGGAGGTCAAAAGGCACTACCAACTTCTTGTGGAGGATGTCAAGTTCATTGAGTCGGGCCGTGTTCCCTACCCGTATCGAAACTCGGGAGCCAGTAACTAA

Homology

[Close]

BLAST of CmoCh11G011190 vs. Swiss-Prot
Match: RADL1_ARATH (Protein RADIALIS-like 1 OS=Arabidopsis thaliana GN=RL1 PE=2 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 2.6e-25
Identity = 55/77 (71.43%), Postives = 65/77 (84.42%), Query Frame = 1


Query: 2  ASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVEDV 61
          +SMSS  S SWTAKQNKAFE+ALA YD+DTP+RW NVA+ VGGKT EEVKRHY+LLV+D+
Sbjct: 4  SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDI 63

Query: 62 KFIESGRVPYP-YRNSG 78
            IE+G VP+P YR SG
Sbjct: 64 NSIENGHVPFPNYRTSG 80

[Close]

BLAST of CmoCh11G011190 vs. Swiss-Prot
Match: RADL2_ARATH (Protein RADIALIS-like 2 OS=Arabidopsis thaliana GN=RL2 PE=2 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.4e-23
Identity = 52/70 (74.29%), Postives = 58/70 (82.86%), Query Frame = 1


Query: 3  SMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVEDVK 62
          SMSS+GS SWT KQNKAFE ALA YD+DTPDRW NVARAVGGKT EE KR Y LLV D++
Sbjct: 5  SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIE 64

Query: 63 FIESGRVPYP 73
           IE+G VP+P
Sbjct: 65 SIENGHVPFP 74

[Close]

BLAST of CmoCh11G011190 vs. Swiss-Prot
Match: RADL3_ARATH (Protein RADIALIS-like 3 OS=Arabidopsis thaliana GN=RL3 PE=2 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.4e-23
Identity = 54/78 (69.23%), Postives = 63/78 (80.77%), Query Frame = 1


Query: 1  MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVED 60
          MAS S   SASWT K+NK FE ALA YD+DTPDRW NVARAVGGK+ EEV+RHY+LL+ D
Sbjct: 1  MASNSMSSSASWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELLIRD 60

Query: 61 VKFIESGRVPYP-YRNSG 78
          V  IESGR P+P YR++G
Sbjct: 61 VNDIESGRYPHPNYRSNG 78

[Close]

BLAST of CmoCh11G011190 vs. Swiss-Prot
Match: RAD_ANTMA (Transcription factor RADIALIS OS=Antirrhinum majus GN=RAD PE=1 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 4.2e-23
Identity = 51/77 (66.23%), Postives = 65/77 (84.42%), Query Frame = 1


Query: 5  SSHGSAS-WTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVEDVKF 64
          S+ GS   W+AK+NKAFE ALA YD+DTPDRW NVARAV G+T EEVK+HY++LVED+K+
Sbjct: 3  STRGSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKY 62

Query: 65 IESGRVPYP-YRNSGAS 80
          IESG+VP+P YR +G +
Sbjct: 63 IESGKVPFPNYRTTGGN 79

[Close]

BLAST of CmoCh11G011190 vs. Swiss-Prot
Match: RADL6_ARATH (Protein RADIALIS-like 6 OS=Arabidopsis thaliana GN=RL6 PE=2 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.1e-20
Identity = 51/80 (63.75%), Postives = 58/80 (72.50%), Query Frame = 1


Query: 1  MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVED 60
          MAS S    + WT  QNK FE ALA YD+DTPDRW NVA+AVGGKT EEVKRHY +LVED
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 VKFIESGRVPYPYRNSGASN 81
          +  IE+GRVP P   +  SN
Sbjct: 61 LINIETGRVPLPNYKTFESN 80

[Close]

BLAST of CmoCh11G011190 vs. TrEMBL
Match: A0A0A0K348_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G170600 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 7.1e-30
Identity = 65/80 (81.25%), Postives = 71/80 (88.75%), Query Frame = 1


Query: 1  MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVED 60
          MASMSSHGS +WT  QNKAFE+ALA YD+DTPDRWLNVA+AVGGKT EEVKRHY LLVED
Sbjct: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKFIESGRVPYPYRNSGASN 81
          VKFIESG+VP+PYR SG  N
Sbjct: 61 VKFIESGQVPFPYRTSGGGN 80

[Close]

BLAST of CmoCh11G011190 vs. TrEMBL
Match: A0A0A0K344_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G169070 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 9.3e-30
Identity = 63/76 (82.89%), Postives = 72/76 (94.74%), Query Frame = 1


Query: 1  MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVED 60
          MAS+S+HGS  WTAKQNKAFEEALA YD+DTPDRWLNVA+A+GGKTEEEVKRHYQLL+ED
Sbjct: 1  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VKFIESGRVPYPYRNS 77
          VK IESG+VP+PYR+S
Sbjct: 61 VKHIESGKVPFPYRSS 76

[Close]

BLAST of CmoCh11G011190 vs. TrEMBL
Match: A0A0A0K3K0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G168060 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 1.9e-27
Identity = 59/80 (73.75%), Postives = 73/80 (91.25%), Query Frame = 1


Query: 1  MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVED 60
          MASMS+HGS++WTA +NKAFE+ALA YD+DTP+RWLNVA+A+GGKTEEEVKRHYQLL+ED
Sbjct: 1  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VKFIESGRVPYPYRNSGASN 81
          V  IESG++P+PYR S  S+
Sbjct: 61 VNHIESGQIPFPYRKSTRSS 80

[Close]

BLAST of CmoCh11G011190 vs. TrEMBL
Match: A0A0D2W2J5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G036700 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.3e-26
Identity = 59/76 (77.63%), Postives = 68/76 (89.47%), Query Frame = 1


Query: 2  ASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVEDV 61
          +SMSS GS SWTAKQNK FE ALA YD+DTPDRW NVA+AVGGKT EEVKRHY+LLV DV
Sbjct: 4  SSMSSRGSGSWTAKQNKDFERALAVYDKDTPDRWYNVAKAVGGKTAEEVKRHYELLVADV 63

Query: 62 KFIESGRVPYPYRNSG 78
          K+IESG+VP+PYR++G
Sbjct: 64 KYIESGQVPFPYRSNG 79

[Close]

BLAST of CmoCh11G011190 vs. TrEMBL
Match: B9H0R6_POPTR (Myb family transcription factor family protein OS=Populus trichocarpa GN=POPTR_0004s16270g PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 2.1e-26
Identity = 62/79 (78.48%), Postives = 70/79 (88.61%), Query Frame = 1


Query: 2  ASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVEDV 61
          +S+SS GS SWTA+QNKAFE ALA YDRDTPDRW NVARAVGGKT EEVKRHY++LVEDV
Sbjct: 4  SSVSSRGSGSWTAQQNKAFERALAVYDRDTPDRWHNVARAVGGKTAEEVKRHYEILVEDV 63

Query: 62 KFIESGRVPYP-YRNSGAS 80
          K IESGRVP+P YR +GA+
Sbjct: 64 KHIESGRVPFPNYRTTGAN 82

[Close]

BLAST of CmoCh11G011190 vs. TAIR10
Match: AT4G39250.1 (AT4G39250.1 RAD-like 1)

HSP 1 Score: 115.5 bits (288), Expect = 1.5e-26
Identity = 55/77 (71.43%), Postives = 65/77 (84.42%), Query Frame = 1


Query: 2  ASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVEDV 61
          +SMSS  S SWTAKQNKAFE+ALA YD+DTP+RW NVA+ VGGKT EEVKRHY+LLV+D+
Sbjct: 4  SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDI 63

Query: 62 KFIESGRVPYP-YRNSG 78
            IE+G VP+P YR SG
Sbjct: 64 NSIENGHVPFPNYRTSG 80

[Close]

BLAST of CmoCh11G011190 vs. TAIR10
Match: AT2G21650.1 (AT2G21650.1 Homeodomain-like superfamily protein)

HSP 1 Score: 109.8 bits (273), Expect = 8.0e-25
Identity = 52/70 (74.29%), Postives = 58/70 (82.86%), Query Frame = 1


Query: 3  SMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVEDVK 62
          SMSS+GS SWT KQNKAFE ALA YD+DTPDRW NVARAVGGKT EE KR Y LLV D++
Sbjct: 5  SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIE 64

Query: 63 FIESGRVPYP 73
           IE+G VP+P
Sbjct: 65 SIENGHVPFP 74

[Close]

BLAST of CmoCh11G011190 vs. TAIR10
Match: AT1G75250.1 (AT1G75250.1 RAD-like 6)

HSP 1 Score: 100.1 bits (248), Expect = 6.4e-22
Identity = 51/80 (63.75%), Postives = 58/80 (72.50%), Query Frame = 1


Query: 1  MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVED 60
          MAS S    + WT  QNK FE ALA YD+DTPDRW NVA+AVGGKT EEVKRHY +LVED
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 VKFIESGRVPYPYRNSGASN 81
          +  IE+GRVP P   +  SN
Sbjct: 61 LINIETGRVPLPNYKTFESN 80

[Close]

BLAST of CmoCh11G011190 vs. TAIR10
Match: AT2G18328.1 (AT2G18328.1 RAD-like 4)

HSP 1 Score: 99.8 bits (247), Expect = 8.3e-22
Identity = 50/77 (64.94%), Postives = 63/77 (81.82%), Query Frame = 1


Query: 1  MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVED 60
          MAS SS  ++SWTA+++K FE ALA++D+DTPDRW  +ARAVGGK+ EEVKRHY+LL+ D
Sbjct: 1  MAS-SSMSTSSWTAREDKQFEMALAKFDKDTPDRWQKIARAVGGKSTEEVKRHYELLLRD 60

Query: 61 VKFIESGRVPYP-YRNS 77
          V  IESGR P P YRN+
Sbjct: 61 VNDIESGRYPQPRYRNT 76

[Close]

BLAST of CmoCh11G011190 vs. TAIR10
Match: AT1G19510.1 (AT1G19510.1 RAD-like 5)

HSP 1 Score: 98.6 bits (244), Expect = 1.9e-21
Identity = 48/72 (66.67%), Postives = 55/72 (76.39%), Query Frame = 1


Query: 1  MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVED 60
          MAS S   S+SWT+KQNK FE ALA YD+DTPDRW NVA+AVG K+ EEVKRHY +LVED
Sbjct: 1  MASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVED 60

Query: 61 VKFIESGRVPYP 73
          +  IE   VP P
Sbjct: 61 LMNIEQDLVPLP 72

[Close]

BLAST of CmoCh11G011190 vs. NCBI nr
Match: gi|659092346|ref|XP_008447024.1| (PREDICTED: protein RADIALIS-like 1 [Cucumis melo])

HSP 1 Score: 139.0 bits (349), Expect = 3.5e-30
Identity = 66/80 (82.50%), Postives = 72/80 (90.00%), Query Frame = 1


Query: 1  MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVED 60
          MASMSSHGS +WT KQNKAFE+ALA YD+DTPDRWLNVA+AVGGKT EEVKRHY LLVED
Sbjct: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKFIESGRVPYPYRNSGASN 81
          VKFIESG+VP+PYR SG  N
Sbjct: 61 VKFIESGQVPFPYRTSGDGN 80

[Close]

BLAST of CmoCh11G011190 vs. NCBI nr
Match: gi|778725458|ref|XP_004151125.2| (PREDICTED: protein RADIALIS-like 1 [Cucumis sativus])

HSP 1 Score: 137.5 bits (345), Expect = 1.0e-29
Identity = 65/80 (81.25%), Postives = 71/80 (88.75%), Query Frame = 1


Query: 1  MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVED 60
          MASMSSHGS +WT  QNKAFE+ALA YD+DTPDRWLNVA+AVGGKT EEVKRHY LLVED
Sbjct: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKFIESGRVPYPYRNSGASN 81
          VKFIESG+VP+PYR SG  N
Sbjct: 61 VKFIESGQVPFPYRTSGGGN 80

[Close]

BLAST of CmoCh11G011190 vs. NCBI nr
Match: gi|449466805|ref|XP_004151116.1| (PREDICTED: protein RADIALIS-like 1 [Cucumis sativus])

HSP 1 Score: 137.1 bits (344), Expect = 1.3e-29
Identity = 63/76 (82.89%), Postives = 72/76 (94.74%), Query Frame = 1


Query: 1  MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVED 60
          MAS+S+HGS  WTAKQNKAFEEALA YD+DTPDRWLNVA+A+GGKTEEEVKRHYQLL+ED
Sbjct: 1  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VKFIESGRVPYPYRNS 77
          VK IESG+VP+PYR+S
Sbjct: 61 VKHIESGKVPFPYRSS 76

[Close]

BLAST of CmoCh11G011190 vs. NCBI nr
Match: gi|659092351|ref|XP_008447025.1| (PREDICTED: protein RADIALIS-like 1 [Cucumis melo])

HSP 1 Score: 136.3 bits (342), Expect = 2.3e-29
Identity = 63/76 (82.89%), Postives = 71/76 (93.42%), Query Frame = 1


Query: 1  MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVED 60
          MASMS+HGS  WTAKQNKAFE+ALA YD+DTPDRWLNVA+A+GGKTEEEVKRHYQLL+ED
Sbjct: 1  MASMSAHGSGVWTAKQNKAFEKALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VKFIESGRVPYPYRNS 77
          VK IESG+VP+PYR S
Sbjct: 61 VKHIESGKVPFPYRTS 76

[Close]

BLAST of CmoCh11G011190 vs. NCBI nr
Match: gi|778725452|ref|XP_011658943.1| (PREDICTED: protein RADIALIS-like 1 [Cucumis sativus])

HSP 1 Score: 129.4 bits (324), Expect = 2.8e-27
Identity = 59/80 (73.75%), Postives = 73/80 (91.25%), Query Frame = 1


Query: 1  MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVED 60
          MASMS+HGS++WTA +NKAFE+ALA YD+DTP+RWLNVA+A+GGKTEEEVKRHYQLL+ED
Sbjct: 1  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VKFIESGRVPYPYRNSGASN 81
          V  IESG++P+PYR S  S+
Sbjct: 61 VNHIESGQIPFPYRKSTRSS 80

The following BLAST results are available for this feature:

BLAST of CmoCh11G011190 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RADL1_ARATH	2.6e-25	71.43	Protein RADIALIS-like 1 OS=Arabidopsis thaliana GN=RL1 PE=2 SV=1	[more]
RADL2_ARATH	1.4e-23	74.29	Protein RADIALIS-like 2 OS=Arabidopsis thaliana GN=RL2 PE=2 SV=1	[more]
RADL3_ARATH	1.4e-23	69.23	Protein RADIALIS-like 3 OS=Arabidopsis thaliana GN=RL3 PE=2 SV=1	[more]
RAD_ANTMA	4.2e-23	66.23	Transcription factor RADIALIS OS=Antirrhinum majus GN=RAD PE=1 SV=1	[more]
RADL6_ARATH	1.1e-20	63.75	Protein RADIALIS-like 6 OS=Arabidopsis thaliana GN=RL6 PE=2 SV=1	[more]

BLAST of CmoCh11G011190 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K348_CUCSA	7.1e-30	81.25	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G170600 PE=4 SV=1	[more]
A0A0A0K344_CUCSA	9.3e-30	82.89	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G169070 PE=4 SV=1	[more]
A0A0A0K3K0_CUCSA	1.9e-27	73.75	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G168060 PE=4 SV=1	[more]
A0A0D2W2J5_GOSRA	1.3e-26	77.63	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G036700 PE=4 SV=1	[more]
B9H0R6_POPTR	2.1e-26	78.48	Myb family transcription factor family protein OS=Populus trichocarpa GN=POPTR_0...	[more]

BLAST of CmoCh11G011190 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G39250.1	1.5e-26	71.43	RAD-like 1	[more]
AT2G21650.1	8.0e-25	74.29	Homeodomain-like superfamily protein	[more]
AT1G75250.1	6.4e-22	63.75	RAD-like 6	[more]
AT2G18328.1	8.3e-22	64.94	RAD-like 4	[more]
AT1G19510.1	1.9e-21	66.67	RAD-like 5	[more]

BLAST of CmoCh11G011190 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659092346\|ref\|XP_008447024.1\|	3.5e-30	82.50	PREDICTED: protein RADIALIS-like 1 [Cucumis melo]	[more]
gi\|778725458\|ref\|XP_004151125.2\|	1.0e-29	81.25	PREDICTED: protein RADIALIS-like 1 [Cucumis sativus]	[more]
gi\|449466805\|ref\|XP_004151116.1\|	1.3e-29	82.89	PREDICTED: protein RADIALIS-like 1 [Cucumis sativus]	[more]
gi\|659092351\|ref\|XP_008447025.1\|	2.3e-29	82.89	PREDICTED: protein RADIALIS-like 1 [Cucumis melo]	[more]
gi\|778725452\|ref\|XP_011658943.1\|	2.8e-27	73.75	PREDICTED: protein RADIALIS-like 1 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001005	SANT/Myb
IPR009057	Homeobox-like_sf
IPR017884	SANT_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G011190.1	CmoCh11G011190.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 11..56 score: 9.
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 8..60 score: 2.
IPR009057	Homeodomain-like	GENE3D	G3DSA:1.10.10.60		coord: 10..62 score: 2.
IPR009057	Homeodomain-like	unknown	SSF46689	Homeodomain-like	coord: 11..64 score: 1.14
IPR017884	SANT domain	PROFILE	PS51293	SANT	coord: 7..62 score: 9
None	No IPR available	PANTHER	PTHR24078	DNAJ HOMOLOG SUBFAMILY C MEMBER	coord: 9..71 score: 2.2
None	No IPR available	PANTHER	PTHR24078:SF177	PROTEIN DNJ-23-RELATED	coord: 9..71 score: 2.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh11G011190	Cucsa.377630	Cucumber (Gy14) v1	cgycmoB1036
CmoCh11G011190	Cucsa.240590	Cucumber (Gy14) v1	cgycmoB0673
CmoCh11G011190	CmaCh19G006700	Cucurbita maxima (Rimu)	cmacmoB495
CmoCh11G011190	CmaCh11G010940	Cucurbita maxima (Rimu)	cmacmoB112
CmoCh11G011190	Cla015917	Watermelon (97103) v1	cmowmB111
CmoCh11G011190	MELO3C012500	Melon (DHL92) v3.5.1	cmomeB086
CmoCh11G011190	ClCG02G004920	Watermelon (Charleston Gray)	cmowcgB089
CmoCh11G011190	CSPI07G11740	Wild cucumber (PI 183967)	cmocpiB140
CmoCh11G011190	Lsi11G011060	Bottle gourd (USVL1VR-Ls)	cmolsiB090
CmoCh11G011190	Cp4.1LG15g05490	Cucurbita pepo (Zucchini)	cmocpeB096
CmoCh11G011190	Cp4.1LG04g00900	Cucurbita pepo (Zucchini)	cmocpeB127
CmoCh11G011190	MELO3C012500.2	Melon (DHL92) v3.6.1	cmomedB092
CmoCh11G011190	CsaV3_7G023660	Cucumber (Chinese Long) v3	cmocucB0163
CmoCh11G011190	Cla97C02G031880	Watermelon (97103) v2	cmowmbB089
CmoCh11G011190	Bhi05G001102	Wax gourd	cmowgoB0121
CmoCh11G011190	CsGy7G010930	Cucumber (Gy14) v2	cgybcmoB884
CmoCh11G011190	CsGy7G000030	Cucumber (Gy14) v2	cgybcmoB882
CmoCh11G011190	Carg19406	Silver-seed gourd	carcmoB0431
CmoCh11G011190	Carg24682	Silver-seed gourd	carcmoB0245

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh11G011190	CmoCh19G006820	Cucurbita moschata (Rifu)	cmocmoB111

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh11G011190	Cucurbita moschata (Rifu)	cmocmoB120