Cucsa.240590 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.240590
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionMyb family transcription factor family protein
Locationscaffold02047 : 657463 .. 657768 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCAATGTCCTCTCATGGCTCAAATGCATGGACTAAAATGCAAAACAAGACATTTGAAATGGCTTTGGCTGAATATGATCAAGACACTCCTGAACGATGGGTGAATGTTGCTAAGGCTGTTGGTGAAAAAACTGAAGAGGAAGTCAAGAGGCATTACCAACTTCTCCTTCATGATGTCAAACATATTGAGTCTGGCAATGTCCCTTTTCCCTATCCAAAGACATCGAGCAATGATGATTTGCCAAGGAAACGAGGTGTCTTGTTTCTCCTTTCTCCTTTCTCGTTTTCAATCTCTCTATGA

mRNA sequence

ATGGCTTCAATGTCCTCTCATGGCTCAAATGCATGGACTAAAATGCAAAACAAGACATTTGAAATGGCTTTGGCTGAATATGATCAAGACACTCCTGAACGATGGGTGAATGTTGCTAAGGCTGTTGGTGAAAAAACTGAAGAGGAAGTCAAGAGGCATTACCAACTTCTCCTTCATGATGTCAAACATATTGAGTCTGGCAATGTCCCTTTTCCCTATCCAAAGACATCGAGCAATGATGATTTGCCAAGGAAACGAGGTGTCTTGTTTCTCCTTTCTCCTTTCTCGTTTTCAATCTCTCTATGA

Coding sequence (CDS)

ATGGCTTCAATGTCCTCTCATGGCTCAAATGCATGGACTAAAATGCAAAACAAGACATTTGAAATGGCTTTGGCTGAATATGATCAAGACACTCCTGAACGATGGGTGAATGTTGCTAAGGCTGTTGGTGAAAAAACTGAAGAGGAAGTCAAGAGGCATTACCAACTTCTCCTTCATGATGTCAAACATATTGAGTCTGGCAATGTCCCTTTTCCCTATCCAAAGACATCGAGCAATGATGATTTGCCAAGGAAACGAGGTGTCTTGTTTCTCCTTTCTCCTTTCTCGTTTTCAATCTCTCTATGA

Protein sequence

MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPKTSSNDDLPRKRGVLFLLSPFSFSISL*
Homology
[Close]
BLAST of Cucsa.240590 vs. Swiss-Prot
Match: RADL1_ARATH (Protein RADIALIS-like 1 OS=Arabidopsis thaliana GN=RL1 PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.2e-22
Identity = 50/76 (65.79%), Postives = 58/76 (76.32%), Query Frame = 1 

Query: 2  ASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDV 61
          +SMSS  S +WT  QNK FE ALA YDQDTP RW NVAK VG KT EEVKRHY+LL+ D+
Sbjct: 4  SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDI 63

Query: 62 KHIESGNVPFPYPKTS 78
            IE+G+VPFP  +TS
Sbjct: 64 NSIENGHVPFPNYRTS 79

[Close]
BLAST of Cucsa.240590 vs. Swiss-Prot
Match: RADL2_ARATH (Protein RADIALIS-like 2 OS=Arabidopsis thaliana GN=RL2 PE=2 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.6e-22
Identity = 52/85 (61.18%), Postives = 63/85 (74.12%), Query Frame = 1 

Query: 3  SMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVK 62
          SMSS+GS +WT  QNK FE ALA YDQDTP+RW NVA+AVG KT EE KR Y LL+ D++
Sbjct: 5  SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIE 64

Query: 63 HIESGNVPFP-YPKTSSNDDLPRKR 87
           IE+G+VPFP Y  T+ N +  R R
Sbjct: 65 SIENGHVPFPDYKTTTGNSNRGRLR 89

[Close]
BLAST of Cucsa.240590 vs. Swiss-Prot
Match: RADL3_ARATH (Protein RADIALIS-like 3 OS=Arabidopsis thaliana GN=RL3 PE=2 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 4.2e-20
Identity = 46/80 (57.50%), Postives = 59/80 (73.75%), Query Frame = 1 

Query: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD 60
          MAS S   S +WT+ +NK FE ALA YDQDTP+RW NVA+AVG K+ EEV+RHY+LL+ D
Sbjct: 1  MASNSMSSSASWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELLIRD 60

Query: 61 VKHIESGNVPFPYPKTSSND 81
          V  IESG  P P  +++ N+
Sbjct: 61 VNDIESGRYPHPNYRSNGNN 80

[Close]
BLAST of Cucsa.240590 vs. Swiss-Prot
Match: RADL5_ARATH (Protein RADIALIS-like 5 OS=Arabidopsis thaliana GN=RL5 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 2.7e-19
Identity = 46/76 (60.53%), Postives = 55/76 (72.37%), Query Frame = 1 

Query: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD 60
          MAS S   S++WT  QNK FE ALA YD+DTP+RW NVAKAVG K+ EEVKRHY +L+ D
Sbjct: 1  MASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVED 60

Query: 61 VKHIESGNVPFPYPKT 77
          + +IE   VP P  KT
Sbjct: 61 LMNIEQDLVPLPKYKT 76

[Close]
BLAST of Cucsa.240590 vs. Swiss-Prot
Match: RADL6_ARATH (Protein RADIALIS-like 6 OS=Arabidopsis thaliana GN=RL6 PE=2 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 6.1e-19
Identity = 47/76 (61.84%), Postives = 55/76 (72.37%), Query Frame = 1 

Query: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD 60
          MAS S    + WT  QNK FE ALA YD+DTP+RW NVAKAVG KT EEVKRHY +L+ D
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 VKHIESGNVPFPYPKT 77
          + +IE+G VP P  KT
Sbjct: 61 LINIETGRVPLPNYKT 76

[Close]
BLAST of Cucsa.240590 vs. TrEMBL
Match: A0A0A0K3K0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G168060 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 5.5e-27
Identity = 58/77 (75.32%), Postives = 68/77 (88.31%), Query Frame = 1 

Query: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD 60
          MASMS+HGS+AWT ++NK FE ALA YD+DTPERW+NVAKA+G KTEEEVKRHYQLLL D
Sbjct: 1  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VKHIESGNVPFPYPKTS 78
          V HIESG +PFPY K++
Sbjct: 61 VNHIESGQIPFPYRKST 77

[Close]
BLAST of Cucsa.240590 vs. TrEMBL
Match: A0A0A0K344_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G169070 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 7.2e-27
Identity = 59/79 (74.68%), Postives = 66/79 (83.54%), Query Frame = 1 

Query: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD 60
          MAS+S+HGS  WT  QNK FE ALA YD+DTP+RW+NVAKA+G KTEEEVKRHYQLLL D
Sbjct: 1  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VKHIESGNVPFPYPKTSSN 80
          VKHIESG VPFPY  + SN
Sbjct: 61 VKHIESGKVPFPYRSSRSN 79

[Close]
BLAST of Cucsa.240590 vs. TrEMBL
Match: A0A0A0K348_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G170600 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 2.0e-24
Identity = 57/73 (78.08%), Postives = 60/73 (82.19%), Query Frame = 1 

Query: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD 60
          MASMSSHGS  WT  QNK FE ALA YDQDTP+RW+NVAKAVG KT EEVKRHY LL+ D
Sbjct: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKHIESGNVPFPY 74
          VK IESG VPFPY
Sbjct: 61 VKFIESGQVPFPY 73

[Close]
BLAST of Cucsa.240590 vs. TrEMBL
Match: A0A061E040_THECC (Homeodomain-like superfamily protein OS=Theobroma cacao GN=TCM_006883 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.3e-23
Identity = 61/105 (58.10%), Postives = 74/105 (70.48%), Query Frame = 1 

Query: 2   ASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDV 61
           +SMSS GS +WT  QNK FE ALA YD+DTP+RW NVAKAVG KT EEVKRHY+LL+ DV
Sbjct: 4   SSMSSRGSGSWTAKQNKDFERALAVYDKDTPDRWYNVAKAVGGKTAEEVKRHYELLVQDV 63

Query: 62  KHIESGNVPFPYPKTS--------SNDDLPRKRGVLFLLSPFSFS 99
           KHIESG VPFP  +TS        S+++      VLF ++P + S
Sbjct: 64  KHIESGQVPFPNYRTSAGNSRGNASDEEKNLIPDVLFHVAPITLS 108

[Close]
BLAST of Cucsa.240590 vs. TrEMBL
Match: B9HRM8_POPTR (Myb family transcription factor family protein OS=Populus trichocarpa GN=POPTR_0009s11930g PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 6.3e-23
Identity = 55/79 (69.62%), Postives = 64/79 (81.01%), Query Frame = 1 

Query: 2  ASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDV 61
          +SMSS GS +WT  QNK FE ALA YD+DTP+RW NVA+AVG KT EEVKRHY+LL+ DV
Sbjct: 4  SSMSSRGSGSWTVQQNKAFERALAVYDRDTPDRWYNVARAVGGKTAEEVKRHYELLVEDV 63

Query: 62 KHIESGNVPFP-YPKTSSN 80
          KHIESG+VPFP Y  T +N
Sbjct: 64 KHIESGHVPFPNYRTTGAN 82

[Close]
BLAST of Cucsa.240590 vs. TAIR10
Match: AT4G39250.1 (AT4G39250.1 RAD-like 1)

HSP 1 Score: 107.1 bits (266), Expect = 6.6e-24
Identity = 50/76 (65.79%), Postives = 58/76 (76.32%), Query Frame = 1 

Query: 2  ASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDV 61
          +SMSS  S +WT  QNK FE ALA YDQDTP RW NVAK VG KT EEVKRHY+LL+ D+
Sbjct: 4  SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDI 63

Query: 62 KHIESGNVPFPYPKTS 78
            IE+G+VPFP  +TS
Sbjct: 64 NSIENGHVPFPNYRTS 79

[Close]
BLAST of Cucsa.240590 vs. TAIR10
Match: AT2G21650.1 (AT2G21650.1 Homeodomain-like superfamily protein)

HSP 1 Score: 105.9 bits (263), Expect = 1.5e-23
Identity = 52/85 (61.18%), Postives = 63/85 (74.12%), Query Frame = 1 

Query: 3  SMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVK 62
          SMSS+GS +WT  QNK FE ALA YDQDTP+RW NVA+AVG KT EE KR Y LL+ D++
Sbjct: 5  SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIE 64

Query: 63 HIESGNVPFP-YPKTSSNDDLPRKR 87
           IE+G+VPFP Y  T+ N +  R R
Sbjct: 65 SIENGHVPFPDYKTTTGNSNRGRLR 89

[Close]
BLAST of Cucsa.240590 vs. TAIR10
Match: AT1G19510.1 (AT1G19510.1 RAD-like 5)

HSP 1 Score: 95.9 bits (237), Expect = 1.5e-20
Identity = 46/76 (60.53%), Postives = 55/76 (72.37%), Query Frame = 1 

Query: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD 60
          MAS S   S++WT  QNK FE ALA YD+DTP+RW NVAKAVG K+ EEVKRHY +L+ D
Sbjct: 1  MASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVED 60

Query: 61 VKHIESGNVPFPYPKT 77
          + +IE   VP P  KT
Sbjct: 61 LMNIEQDLVPLPKYKT 76

[Close]
BLAST of Cucsa.240590 vs. TAIR10
Match: AT1G75250.1 (AT1G75250.1 RAD-like 6)

HSP 1 Score: 94.7 bits (234), Expect = 3.4e-20
Identity = 47/76 (61.84%), Postives = 55/76 (72.37%), Query Frame = 1 

Query: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD 60
          MAS S    + WT  QNK FE ALA YD+DTP+RW NVAKAVG KT EEVKRHY +L+ D
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 VKHIESGNVPFPYPKT 77
          + +IE+G VP P  KT
Sbjct: 61 LINIETGRVPLPNYKT 76

[Close]
BLAST of Cucsa.240590 vs. TAIR10
Match: AT2G18328.1 (AT2G18328.1 RAD-like 4)

HSP 1 Score: 89.7 bits (221), Expect = 1.1e-18
Identity = 43/72 (59.72%), Postives = 56/72 (77.78%), Query Frame = 1 

Query: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD 60
          MAS SS  +++WT  ++K FEMALA++D+DTP+RW  +A+AVG K+ EEVKRHY+LLL D
Sbjct: 1  MAS-SSMSTSSWTAREDKQFEMALAKFDKDTPDRWQKIARAVGGKSTEEVKRHYELLLRD 60

Query: 61 VKHIESGNVPFP 73
          V  IESG  P P
Sbjct: 61 VNDIESGRYPQP 71

[Close]
BLAST of Cucsa.240590 vs. NCBI nr
Match: gi|778726246|ref|XP_011659078.1| (PREDICTED: protein RADIALIS-like 2 [Cucumis sativus])

HSP 1 Score: 179.5 bits (454), Expect = 3.0e-42
Identity = 85/87 (97.70%), Postives = 85/87 (97.70%), Query Frame = 1 

Query: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD 60
          MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVK HYQLLLHD
Sbjct: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKMHYQLLLHD 60

Query: 61 VKHIESGNVPFPYPKTSSNDDLPRKRG 88
          VKHIESGNVPFPYP TSSNDDLPRKRG
Sbjct: 61 VKHIESGNVPFPYPTTSSNDDLPRKRG 87

[Close]
BLAST of Cucsa.240590 vs. NCBI nr
Match: gi|659092931|ref|XP_008447294.1| (PREDICTED: protein RADIALIS-like 2 [Cucumis melo])

HSP 1 Score: 179.5 bits (454), Expect = 3.0e-42
Identity = 85/89 (95.51%), Postives = 87/89 (97.75%), Query Frame = 1 

Query: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD 60
          MASMSSHGSNAWTKMQNKTFE ALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD
Sbjct: 1  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD 60

Query: 61 VKHIESGNVPFPYPKTSSNDDLPRKRGVL 90
          VKHIESGNVPFPYP TSS+DDLPRKRGV+
Sbjct: 61 VKHIESGNVPFPYPTTSSDDDLPRKRGVV 89

[Close]
BLAST of Cucsa.240590 vs. NCBI nr
Match: gi|778725452|ref|XP_011658943.1| (PREDICTED: protein RADIALIS-like 1 [Cucumis sativus])

HSP 1 Score: 128.3 bits (321), Expect = 7.9e-27
Identity = 58/77 (75.32%), Postives = 68/77 (88.31%), Query Frame = 1 

Query: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD 60
          MASMS+HGS+AWT ++NK FE ALA YD+DTPERW+NVAKA+G KTEEEVKRHYQLLL D
Sbjct: 1  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VKHIESGNVPFPYPKTS 78
          V HIESG +PFPY K++
Sbjct: 61 VNHIESGQIPFPYRKST 77

[Close]
BLAST of Cucsa.240590 vs. NCBI nr
Match: gi|449466805|ref|XP_004151116.1| (PREDICTED: protein RADIALIS-like 1 [Cucumis sativus])

HSP 1 Score: 127.9 bits (320), Expect = 1.0e-26
Identity = 59/79 (74.68%), Postives = 66/79 (83.54%), Query Frame = 1 

Query: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD 60
          MAS+S+HGS  WT  QNK FE ALA YD+DTP+RW+NVAKA+G KTEEEVKRHYQLLL D
Sbjct: 1  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VKHIESGNVPFPYPKTSSN 80
          VKHIESG VPFPY  + SN
Sbjct: 61 VKHIESGKVPFPYRSSRSN 79

[Close]
BLAST of Cucsa.240590 vs. NCBI nr
Match: gi|659092351|ref|XP_008447025.1| (PREDICTED: protein RADIALIS-like 1 [Cucumis melo])

HSP 1 Score: 127.5 bits (319), Expect = 1.3e-26
Identity = 59/79 (74.68%), Postives = 65/79 (82.28%), Query Frame = 1 

Query: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD 60
          MASMS+HGS  WT  QNK FE ALA YD+DTP+RW+NVAKA+G KTEEEVKRHYQLLL D
Sbjct: 1  MASMSAHGSGVWTAKQNKAFEKALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VKHIESGNVPFPYPKTSSN 80
          VKHIESG VPFPY  +  N
Sbjct: 61 VKHIESGKVPFPYRTSRGN 79

The following BLAST results are available for this feature:
BLAST of Cucsa.240590 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RADL1_ARATH1.2e-2265.79Protein RADIALIS-like 1 OS=Arabidopsis thaliana GN=RL1 PE=2 SV=1[more]
RADL2_ARATH2.6e-2261.18Protein RADIALIS-like 2 OS=Arabidopsis thaliana GN=RL2 PE=2 SV=1[more]
RADL3_ARATH4.2e-2057.50Protein RADIALIS-like 3 OS=Arabidopsis thaliana GN=RL3 PE=2 SV=1[more]
RADL5_ARATH2.7e-1960.53Protein RADIALIS-like 5 OS=Arabidopsis thaliana GN=RL5 PE=3 SV=1[more]
RADL6_ARATH6.1e-1961.84Protein RADIALIS-like 6 OS=Arabidopsis thaliana GN=RL6 PE=2 SV=1[more]
BLAST of Cucsa.240590 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K3K0_CUCSA5.5e-2775.32Uncharacterized protein OS=Cucumis sativus GN=Csa_7G168060 PE=4 SV=1[more]
A0A0A0K344_CUCSA7.2e-2774.68Uncharacterized protein OS=Cucumis sativus GN=Csa_7G169070 PE=4 SV=1[more]
A0A0A0K348_CUCSA2.0e-2478.08Uncharacterized protein OS=Cucumis sativus GN=Csa_7G170600 PE=4 SV=1[more]
A0A061E040_THECC1.3e-2358.10Homeodomain-like superfamily protein OS=Theobroma cacao GN=TCM_006883 PE=4 SV=1[more]
B9HRM8_POPTR6.3e-2369.62Myb family transcription factor family protein OS=Populus trichocarpa GN=POPTR_0... [more]
BLAST of Cucsa.240590 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G39250.16.6e-2465.79 RAD-like 1[more]
AT2G21650.11.5e-2361.18 Homeodomain-like superfamily protein[more]
AT1G19510.11.5e-2060.53 RAD-like 5[more]
AT1G75250.13.4e-2061.84 RAD-like 6[more]
AT2G18328.11.1e-1859.72 RAD-like 4[more]
BLAST of Cucsa.240590 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778726246|ref|XP_011659078.1|3.0e-4297.70PREDICTED: protein RADIALIS-like 2 [Cucumis sativus][more]
gi|659092931|ref|XP_008447294.1|3.0e-4295.51PREDICTED: protein RADIALIS-like 2 [Cucumis melo][more]
gi|778725452|ref|XP_011658943.1|7.9e-2775.32PREDICTED: protein RADIALIS-like 1 [Cucumis sativus][more]
gi|449466805|ref|XP_004151116.1|1.0e-2674.68PREDICTED: protein RADIALIS-like 1 [Cucumis sativus][more]
gi|659092351|ref|XP_008447025.1|1.3e-2674.68PREDICTED: protein RADIALIS-like 1 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001005SANT/Myb
IPR009057Homeobox-like_sf
IPR017877Myb-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005634 nucleus
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.240590.1Cucsa.240590.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001005SANT/Myb domainPFAMPF00249Myb_DNA-bindingcoord: 10..57
score: 3.
IPR001005SANT/Myb domainSMARTSM00717santcoord: 8..60
score: 1.
IPR009057Homeodomain-likeGENE3DG3DSA:1.10.10.60coord: 11..64
score: 6.
IPR009057Homeodomain-likeunknownSSF46689Homeodomain-likecoord: 10..66
score: 2.26
IPR017877Myb-like domainPROFILEPS50090MYB_LIKEcoord: 4..58
score: 6
NoneNo IPR availablePANTHERPTHR24078DNAJ HOMOLOG SUBFAMILY C MEMBERcoord: 9..71
score: 3.4
NoneNo IPR availablePANTHERPTHR24078:SF177PROTEIN DNJ-23-RELATEDcoord: 9..71
score: 3.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.240590Cla015917Watermelon (97103) v1cgywmB459
Cucsa.240590MELO3C012500Melon (DHL92) v3.5.1cgymeB408
Cucsa.240590ClCG02G004920Watermelon (Charleston Gray)cgywcgB429
Cucsa.240590CSPI07G11740Wild cucumber (PI 183967)cgycpiB364
Cucsa.240590CmaCh11G010940Cucurbita maxima (Rimu)cgycmaB0673
Cucsa.240590CmaCh19G006700Cucurbita maxima (Rimu)cgycmaB0677
Cucsa.240590CmoCh11G011190Cucurbita moschata (Rifu)cgycmoB0673
Cucsa.240590CmoCh19G006820Cucurbita moschata (Rifu)cgycmoB0678
Cucsa.240590Lsi11G011060Bottle gourd (USVL1VR-Ls)cgylsiB396
Cucsa.240590Lsi10G003670Bottle gourd (USVL1VR-Ls)cgylsiB394
Cucsa.240590Cp4.1LG04g00900Cucurbita pepo (Zucchini)cgycpeB0645
Cucsa.240590Cp4.1LG15g05490Cucurbita pepo (Zucchini)cgycpeB0639
Cucsa.240590MELO3C012500.2Melon (DHL92) v3.6.1cgymedB406
Cucsa.240590CsaV3_7G023660Cucumber (Chinese Long) v3cgycucB367
Cucsa.240590Cla97C02G031860Watermelon (97103) v2cgywmbB428
Cucsa.240590Bhi05G001102Wax gourdcgywgoB486
Cucsa.240590Bhi10G001619Wax gourdcgywgoB488
Cucsa.240590Carg19405Silver-seed gourdcarcgyB0370
Cucsa.240590Carg24682Silver-seed gourdcarcgyB0214
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.240590Watermelon (97103) v2cgywmbB433
Cucsa.240590Wax gourdcgywgoB491
Cucsa.240590Cucurbita maxima (Rimu)cgycmaB0676
Cucsa.240590Cucurbita moschata (Rifu)cgycmoB0677
Cucsa.240590Cucumber (Chinese Long) v2cgycuB348
Cucsa.240590Watermelon (Charleston Gray)cgywcgB424
Cucsa.240590Watermelon (97103) v1cgywmB454
Cucsa.240590Bottle gourd (USVL1VR-Ls)cgylsiB399