CsaV3_7G023660 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G023660
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Descriptionprotein RADIALIS-like 2
Locationchr7 : 12696375 .. 12697151 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TATTCCTTCCATTTTTTGTTCCTCTTTCCAAAACCCATTTCTTTTGTTTTGGCAATTCAAAGCTCAATACTAACAAAAGTAATGGCTTCAATGTCCTCTCATGGCTCAAATGCATGGACTAAAATGCAAAACAAGACATTTGAAATGGCTTTGGCTGAATATGATCAAGACACTCCTGAACGATGGGTGAATGTTGCTAAGGCTGTTGGTGAAAAAACTGAAGAGGAAGTCAAGATGCATTACCAACTTCTCCTTCATGATGTCAAACATATTGAGTCTGGCAATGTCCCTTTTCCCTATCCAACGACATCGAGCAATGATGATTTGCCAAGGAAACGAGGTGTCTTGTTTCTCCTTTCTCCTTTCTCGTTTTCAATCTCTCTATGAAACAAATTTTGTACCTGCTCTTGGTTTCTTGTTTCCCATTTATTCGAAAATTACGTGTTTTCAAAATTGTGAACACGGTTTTTGGCAACAGTAAAAACCAAATCTTCTTGTTTTCCCATCGCTTTATCTCGTTTCTTATATCATTTTATTTTTACTTCTAAATTGCATAAGAAACTGTACATTTTTTATTTTATATATACCAAGTTGATATACCAAGTTCTCCTTCGATTATATTTATTTATTTGTTTTGTTTTTCCTCTCAGGATGATTAAGAACAAACTCTTCATTGATCGAGCTGGTGCAATACTTTGAAGAATATAGAAGAAGAAAGAACCATATGCCTTTAAATACAGTTTTACTACTGATGAATGAATAAATAAGAGTTTAATC

mRNA sequence

ATGGCTTCAATGTCCTCTCATGGCTCAAATGCATGGACTAAAATGCAAAACAAGACATTTGAAATGGCTTTGGCTGAATATGATCAAGACACTCCTGAACGATGGGTGAATGTTGCTAAGGCTGTTGGTGAAAAAACTGAAGAGGAAGTCAAGATGCATTACCAACTTCTCCTTCATGATGTCAAACATATTGAGTCTGGCAATGTCCCTTTTCCCTATCCAACGACATCGAGCAATGATGATTTGCCAAGGAAACGAGGATGA

Coding sequence (CDS)

ATGGCTTCAATGTCCTCTCATGGCTCAAATGCATGGACTAAAATGCAAAACAAGACATTTGAAATGGCTTTGGCTGAATATGATCAAGACACTCCTGAACGATGGGTGAATGTTGCTAAGGCTGTTGGTGAAAAAACTGAAGAGGAAGTCAAGATGCATTACCAACTTCTCCTTCATGATGTCAAACATATTGAGTCTGGCAATGTCCCTTTTCCCTATCCAACGACATCGAGCAATGATGATTTGCCAAGGAAACGAGGATGA

Protein sequence

MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKMHYQLLLHDVKHIESGNVPFPYPTTSSNDDLPRKRG
Homology
[Close]
BLAST of CsaV3_7G023660 vs. NCBI nr
Match: XP_011659078.1 (PREDICTED: protein RADIALIS-like 2 [Cucumis sativus])

HSP 1 Score: 182.2 bits (461), Expect = 7.7e-43
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKMHYQLLLHD 60
          MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKMHYQLLLHD
Sbjct: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKMHYQLLLHD 60

Query: 61 VKHIESGNVPFPYPTTSSNDDLPRKRG 88
          VKHIESGNVPFPYPTTSSNDDLPRKRG
Sbjct: 61 VKHIESGNVPFPYPTTSSNDDLPRKRG 87

[Close]
BLAST of CsaV3_7G023660 vs. NCBI nr
Match: XP_008447294.1 (PREDICTED: protein RADIALIS-like 2 [Cucumis melo])

HSP 1 Score: 175.6 bits (444), Expect = 7.2e-41
Identity = 84/87 (96.55%), Postives = 85/87 (97.70%), Query Frame = 0 

Query: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKMHYQLLLHD 60
          MASMSSHGSNAWTKMQNKTFE ALAEYDQDTPERWVNVAKAVGEKTEEEVK HYQLLLHD
Sbjct: 1  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD 60

Query: 61 VKHIESGNVPFPYPTTSSNDDLPRKRG 88
          VKHIESGNVPFPYPTTSS+DDLPRKRG
Sbjct: 61 VKHIESGNVPFPYPTTSSDDDLPRKRG 87

[Close]
BLAST of CsaV3_7G023660 vs. NCBI nr
Match: XP_022952273.1 (protein RADIALIS-like 1 [Cucurbita moschata] >XP_023511439.1 protein RADIALIS-like 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 151.4 bits (381), Expect = 1.5e-33
Identity = 75/87 (86.21%), Postives = 78/87 (89.66%), Query Frame = 0 

Query: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKMHYQLLLHD 60
          MASMSS GSNAWT MQNK FE ALA YDQDTPERW+NVAKAVGEKTEEEVK HYQLLLHD
Sbjct: 1  MASMSSRGSNAWTPMQNKAFEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLLHD 60

Query: 61 VKHIESGNVPFPYPTTSSNDDLPRKRG 88
          VKHIESGNVPFPY   +S+DDLPRKRG
Sbjct: 61 VKHIESGNVPFPY--RNSSDDLPRKRG 85

[Close]
BLAST of CsaV3_7G023660 vs. NCBI nr
Match: XP_022972527.1 (protein RADIALIS-like 1 [Cucurbita maxima])

HSP 1 Score: 149.8 bits (377), Expect = 4.3e-33
Identity = 74/87 (85.06%), Postives = 77/87 (88.51%), Query Frame = 0 

Query: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKMHYQLLLHD 60
          MASMSS GSNAWT MQNK FE ALA YDQDTPERW+NVAK VGEKTEEEVK HYQLLLHD
Sbjct: 1  MASMSSRGSNAWTPMQNKAFEKALAVYDQDTPERWLNVAKVVGEKTEEEVKRHYQLLLHD 60

Query: 61 VKHIESGNVPFPYPTTSSNDDLPRKRG 88
          VKHIESGNVPFPY   +S+DDLPRKRG
Sbjct: 61 VKHIESGNVPFPY--RNSSDDLPRKRG 85

[Close]
BLAST of CsaV3_7G023660 vs. NCBI nr
Match: XP_022136148.1 (protein RADIALIS-like 1 [Momordica charantia])

HSP 1 Score: 141.4 bits (355), Expect = 1.5e-30
Identity = 70/87 (80.46%), Postives = 76/87 (87.36%), Query Frame = 0 

Query: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKMHYQLLLHD 60
          MASMSS GS+AWT MQNK FE ALA YDQDTPERW+NVAKAVGEKTEEEVK HYQLL+ D
Sbjct: 1  MASMSSRGSSAWTAMQNKAFEEALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLVED 60

Query: 61 VKHIESGNVPFPYPTTSSNDDLPRKRG 88
          VKHIESG+VPFPY  TS++DD P KRG
Sbjct: 61 VKHIESGHVPFPY-QTSNDDDFPTKRG 86

[Close]
BLAST of CsaV3_7G023660 vs. TAIR10
Match: AT2G21650.1 (Homeodomain-like superfamily protein)

HSP 1 Score: 104.0 bits (258), Expect = 4.9e-23
Identity = 52/85 (61.18%), Postives = 63/85 (74.12%), Query Frame = 0 

Query: 3  SMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKMHYQLLLHDVK 62
          SMSS+GS +WT  QNK FE ALA YDQDTP+RW NVA+AVG KT EE K  Y LL+ D++
Sbjct: 5  SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIE 64

Query: 63 HIESGNVPFP-YPTTSSNDDLPRKR 87
           IE+G+VPFP Y TT+ N +  R R
Sbjct: 65 SIENGHVPFPDYKTTTGNSNRGRLR 89

[Close]
BLAST of CsaV3_7G023660 vs. TAIR10
Match: AT4G39250.1 (RAD-like 1)

HSP 1 Score: 101.3 bits (251), Expect = 3.1e-22
Identity = 49/76 (64.47%), Postives = 56/76 (73.68%), Query Frame = 0 

Query: 2  ASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKMHYQLLLHDV 61
          +SMSS  S +WT  QNK FE ALA YDQDTP RW NVAK VG KT EEVK HY+LL+ D+
Sbjct: 4  SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDI 63

Query: 62 KHIESGNVPFPYPTTS 78
            IE+G+VPFP   TS
Sbjct: 64 NSIENGHVPFPNYRTS 79

[Close]
BLAST of CsaV3_7G023660 vs. TAIR10
Match: AT1G75250.1 (RAD-like 6)

HSP 1 Score: 90.9 bits (224), Expect = 4.3e-19
Identity = 48/80 (60.00%), Postives = 56/80 (70.00%), Query Frame = 0 

Query: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKMHYQLLLHD 60
          MAS S    + WT  QNK FE ALA YD+DTP+RW NVAKAVG KT EEVK HY +L+ D
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 VKHIESGNVPFP-YPTTSSN 80
          + +IE+G VP P Y T  SN
Sbjct: 61 LINIETGRVPLPNYKTFESN 80

[Close]
BLAST of CsaV3_7G023660 vs. TAIR10
Match: AT1G19510.1 (RAD-like 5)

HSP 1 Score: 89.4 bits (220), Expect = 1.2e-18
Identity = 43/72 (59.72%), Postives = 52/72 (72.22%), Query Frame = 0 

Query: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKMHYQLLLHD 60
          MAS S   S++WT  QNK FE ALA YD+DTP+RW NVAKAVG K+ EEVK HY +L+ D
Sbjct: 1  MASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVED 60

Query: 61 VKHIESGNVPFP 73
          + +IE   VP P
Sbjct: 61 LMNIEQDLVPLP 72

[Close]
BLAST of CsaV3_7G023660 vs. TAIR10
Match: AT2G18328.1 (RAD-like 4)

HSP 1 Score: 85.1 bits (209), Expect = 2.3e-17
Identity = 42/72 (58.33%), Postives = 55/72 (76.39%), Query Frame = 0 

Query: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKMHYQLLLHD 60
          MAS SS  +++WT  ++K FEMALA++D+DTP+RW  +A+AVG K+ EEVK HY+LLL D
Sbjct: 1  MAS-SSMSTSSWTAREDKQFEMALAKFDKDTPDRWQKIARAVGGKSTEEVKRHYELLLRD 60

Query: 61 VKHIESGNVPFP 73
          V  IESG  P P
Sbjct: 61 VNDIESGRYPQP 71

[Close]
BLAST of CsaV3_7G023660 vs. Swiss-Prot
Match: sp|Q9SIJ5|RADL2_ARATH (Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 8.8e-22
Identity = 52/85 (61.18%), Postives = 63/85 (74.12%), Query Frame = 0 

Query: 3  SMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKMHYQLLLHDVK 62
          SMSS+GS +WT  QNK FE ALA YDQDTP+RW NVA+AVG KT EE K  Y LL+ D++
Sbjct: 5  SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIE 64

Query: 63 HIESGNVPFP-YPTTSSNDDLPRKR 87
           IE+G+VPFP Y TT+ N +  R R
Sbjct: 65 SIENGHVPFPDYKTTTGNSNRGRLR 89

[Close]
BLAST of CsaV3_7G023660 vs. Swiss-Prot
Match: sp|F4JVB8|RADL1_ARATH (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 5.7e-21
Identity = 49/76 (64.47%), Postives = 56/76 (73.68%), Query Frame = 0 

Query: 2  ASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKMHYQLLLHDV 61
          +SMSS  S +WT  QNK FE ALA YDQDTP RW NVAK VG KT EEVK HY+LL+ D+
Sbjct: 4  SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDI 63

Query: 62 KHIESGNVPFPYPTTS 78
            IE+G+VPFP   TS
Sbjct: 64 NSIENGHVPFPNYRTS 79

[Close]
BLAST of CsaV3_7G023660 vs. Swiss-Prot
Match: sp|Q58FS3|RAD_ANTMA (Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 9.1e-19
Identity = 48/87 (55.17%), Postives = 59/87 (67.82%), Query Frame = 0 

Query: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKMHYQLLLHD 60
          MAS    G   W+  +NK FE ALA YD+DTP+RW NVA+AV  +T EEVK HY++L+ D
Sbjct: 1  MASTRGSG-RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVED 60

Query: 61 VKHIESGNVPFP-YPTTSSNDDLPRKR 87
          +K+IESG VPFP Y TT  N     KR
Sbjct: 61 IKYIESGKVPFPNYRTTGGNMKTDEKR 86

[Close]
BLAST of CsaV3_7G023660 vs. Swiss-Prot
Match: sp|Q6NNN0|RADL3_ARATH (Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.0e-18
Identity = 45/80 (56.25%), Postives = 57/80 (71.25%), Query Frame = 0 

Query: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKMHYQLLLHD 60
          MAS S   S +WT+ +NK FE ALA YDQDTP+RW NVA+AVG K+ EEV+ HY+LL+ D
Sbjct: 1  MASNSMSSSASWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELLIRD 60

Query: 61 VKHIESGNVPFPYPTTSSND 81
          V  IESG  P P   ++ N+
Sbjct: 61 VNDIESGRYPHPNYRSNGNN 80

[Close]
BLAST of CsaV3_7G023660 vs. Swiss-Prot
Match: sp|Q1A173|RADL6_ARATH (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 7.7e-18
Identity = 48/80 (60.00%), Postives = 56/80 (70.00%), Query Frame = 0 

Query: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKMHYQLLLHD 60
          MAS S    + WT  QNK FE ALA YD+DTP+RW NVAKAVG KT EEVK HY +L+ D
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 VKHIESGNVPFP-YPTTSSN 80
          + +IE+G VP P Y T  SN
Sbjct: 61 LINIETGRVPLPNYKTFESN 80

[Close]
BLAST of CsaV3_7G023660 vs. TrEMBL
Match: tr|A0A1S3BHZ4|A0A1S3BHZ4_CUCME (protein RADIALIS-like 2 OS=Cucumis melo OX=3656 GN=LOC103489762 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 4.8e-41
Identity = 84/87 (96.55%), Postives = 85/87 (97.70%), Query Frame = 0 

Query: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKMHYQLLLHD 60
          MASMSSHGSNAWTKMQNKTFE ALAEYDQDTPERWVNVAKAVGEKTEEEVK HYQLLLHD
Sbjct: 1  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD 60

Query: 61 VKHIESGNVPFPYPTTSSNDDLPRKRG 88
          VKHIESGNVPFPYPTTSS+DDLPRKRG
Sbjct: 61 VKHIESGNVPFPYPTTSSDDDLPRKRG 87

[Close]
BLAST of CsaV3_7G023660 vs. TrEMBL
Match: tr|A0A1S3BGF6|A0A1S3BGF6_CUCME (protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489576 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 7.4e-26
Identity = 59/79 (74.68%), Postives = 65/79 (82.28%), Query Frame = 0 

Query: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKMHYQLLLHD 60
          MASMS+HGS  WT  QNK FE ALA YD+DTP+RW+NVAKA+G KTEEEVK HYQLLL D
Sbjct: 1  MASMSAHGSGVWTAKQNKAFEKALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VKHIESGNVPFPYPTTSSN 80
          VKHIESG VPFPY T+  N
Sbjct: 61 VKHIESGKVPFPYRTSRGN 79

[Close]
BLAST of CsaV3_7G023660 vs. TrEMBL
Match: tr|A0A0A0K344|A0A0A0K344_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G169070 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 2.2e-25
Identity = 58/79 (73.42%), Postives = 66/79 (83.54%), Query Frame = 0 

Query: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKMHYQLLLHD 60
          MAS+S+HGS  WT  QNK FE ALA YD+DTP+RW+NVAKA+G KTEEEVK HYQLLL D
Sbjct: 1  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VKHIESGNVPFPYPTTSSN 80
          VKHIESG VPFPY ++ SN
Sbjct: 61 VKHIESGKVPFPYRSSRSN 79

[Close]
BLAST of CsaV3_7G023660 vs. TrEMBL
Match: tr|A0A0A0K3K0|A0A0A0K3K0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G168060 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 8.2e-25
Identity = 56/73 (76.71%), Postives = 64/73 (87.67%), Query Frame = 0 

Query: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKMHYQLLLHD 60
          MASMS+HGS+AWT ++NK FE ALA YD+DTPERW+NVAKA+G KTEEEVK HYQLLL D
Sbjct: 1  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VKHIESGNVPFPY 74
          V HIESG +PFPY
Sbjct: 61 VNHIESGQIPFPY 73

[Close]
BLAST of CsaV3_7G023660 vs. TrEMBL
Match: tr|A0A1S3BFW6|A0A1S3BFW6_CUCME (protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489573 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.0e-23
Identity = 57/80 (71.25%), Postives = 62/80 (77.50%), Query Frame = 0 

Query: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKMHYQLLLHD 60
          MASMSSHGS  WT  QNK FE ALA YDQDTP+RW+NVAKAVG KT EEVK HY LL+ D
Sbjct: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKHIESGNVPFPYPTTSSND 81
          VK IESG VPFPY T+   +
Sbjct: 61 VKFIESGQVPFPYRTSGDGN 80

The following BLAST results are available for this feature:
BLAST of CsaV3_7G023660 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011659078.17.7e-43100.00PREDICTED: protein RADIALIS-like 2 [Cucumis sativus][more]
XP_008447294.17.2e-4196.55PREDICTED: protein RADIALIS-like 2 [Cucumis melo][more]
XP_022952273.11.5e-3386.21protein RADIALIS-like 1 [Cucurbita moschata] >XP_023511439.1 protein RADIALIS-li... [more]
XP_022972527.14.3e-3385.06protein RADIALIS-like 1 [Cucurbita maxima][more]
XP_022136148.11.5e-3080.46protein RADIALIS-like 1 [Momordica charantia][more]
BLAST of CsaV3_7G023660 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G21650.14.9e-2361.18Homeodomain-like superfamily protein[more]
AT4G39250.13.1e-2264.47RAD-like 1[more]
AT1G75250.14.3e-1960.00RAD-like 6[more]
AT1G19510.11.2e-1859.72RAD-like 5[more]
AT2G18328.12.3e-1758.33RAD-like 4[more]
BLAST of CsaV3_7G023660 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9SIJ5|RADL2_ARATH8.8e-2261.18Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1[more]
sp|F4JVB8|RADL1_ARATH5.7e-2164.47Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1[more]
sp|Q58FS3|RAD_ANTMA9.1e-1955.17Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1[more]
sp|Q6NNN0|RADL3_ARATH2.0e-1856.25Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1[more]
sp|Q1A173|RADL6_ARATH7.7e-1860.00Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1[more]
BLAST of CsaV3_7G023660 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BHZ4|A0A1S3BHZ4_CUCME4.8e-4196.55protein RADIALIS-like 2 OS=Cucumis melo OX=3656 GN=LOC103489762 PE=4 SV=1[more]
tr|A0A1S3BGF6|A0A1S3BGF6_CUCME7.4e-2674.68protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489576 PE=4 SV=1[more]
tr|A0A0A0K344|A0A0A0K344_CUCSA2.2e-2573.42Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G169070 PE=4 SV=1[more]
tr|A0A0A0K3K0|A0A0A0K3K0_CUCSA8.2e-2576.71Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G168060 PE=4 SV=1[more]
tr|A0A1S3BFW6|A0A1S3BFW6_CUCME2.0e-2371.25protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489573 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR009057Homeobox-like_sf
IPR017877Myb-like_dom
IPR001005SANT/Myb
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G023660.1CsaV3_7G023660.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001005SANT/Myb domainSMARTSM00717santcoord: 8..60
e-value: 5.3E-7
score: 39.3
IPR001005SANT/Myb domainPFAMPF00249Myb_DNA-bindingcoord: 10..57
e-value: 1.3E-5
score: 25.1
IPR001005SANT/Myb domainCDDcd00167SANTcoord: 11..58
e-value: 7.70636E-6
score: 37.9402
NoneNo IPR availableGENE3DG3DSA:1.10.10.60coord: 3..71
e-value: 5.3E-19
score: 69.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 66..87
NoneNo IPR availablePANTHERPTHR43952:SF14PROTEIN RADIALIS-LIKE 1-RELATEDcoord: 1..80
NoneNo IPR availablePANTHERPTHR43952FAMILY NOT NAMEDcoord: 1..80
IPR017877Myb-like domainPROSITEPS50090MYB_LIKEcoord: 4..58
score: 6.121
IPR009057Homeobox-like domain superfamilySUPERFAMILYSSF46689Homeodomain-likecoord: 10..66