CSPI07G11740 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI07G11740
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionMyb family transcription factor family protein
LocationChr7 : 9940519 .. 9941241 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCCATTTTTTGTTCCTCTTTCCAAAACCCATTTCTTTTGTTTTGGCAATTCAAAGCTCAATACTAACAAAAGTAATGGCTTCAATGTCCTCTCATGGCTCAAATGCATGGACTAAAATGCAAAACAAGACATTTGAAATGGCTTTGGCTGAATATGATCAAGACACTCCTGAACGATGGGTGAATGTTGCTAAGGCTGTTGGTGAAAAAACTGAAGAGGAAGTCAAGAGGCATTACCAACTTCTCCTTCATGATGTCAAACATATTGAGTCTGGCAATGTCCCTTTTCCCTATCCAAAGACATCGAGCAATGATGATTTGCCAAGGAAACGAGGTGTCTTGTTTCTCCTTTCTCCTTTCTCGTTTTCAATCTCTCTATGAAACAAATTTTGTACCTGCTCTTGGTTTCTTGTTTCCCATTTATTCGAAAATTACGTGTTTTCAAAATTGTGAAGACGGTTTTTGGCAACAGTAAAAACCAAATCTTCTTGTTTTCCCATCGCTTTATCTCGTTTCTTATATCATTTTATTTTTACTTCTAAATTGCATAAGAAACTGTACATTTTTTATTTTATATATACCAAATTGATATACCAAGTTCTCCTTCGATTATATTTATTTATTTGTTTTGTTTTTCCTCTCAGGATGATTAAGAACAAACTCTTCATTGATCGAGCTGGTGCAATACTTTGAAGAATATAGAAGAAGAAAGAACCATATCCCT

mRNA sequence

ATGGCTTCAATGTCCTCTCATGGCTCAAATGCATGGACTAAAATGCAAAACAAGACATTTGAAATGGCTTTGGCTGAATATGATCAAGACACTCCTGAACGATGGGTGAATGTTGCTAAGGCTGTTGGTGAAAAAACTGAAGAGGAAGTCAAGAGGCATTACCAACTTCTCCTTCATGATGTCAAACATATTGAGTCTGGCAATGTCCCTTTTCCCTATCCAAAGACATCGAGCAATGATGATTTGCCAAGGAAACGAGGATGA

Coding sequence (CDS)

ATGGCTTCAATGTCCTCTCATGGCTCAAATGCATGGACTAAAATGCAAAACAAGACATTTGAAATGGCTTTGGCTGAATATGATCAAGACACTCCTGAACGATGGGTGAATGTTGCTAAGGCTGTTGGTGAAAAAACTGAAGAGGAAGTCAAGAGGCATTACCAACTTCTCCTTCATGATGTCAAACATATTGAGTCTGGCAATGTCCCTTTTCCCTATCCAAAGACATCGAGCAATGATGATTTGCCAAGGAAACGAGGATGA
Homology
[Close]
BLAST of CSPI07G11740 vs. Swiss-Prot
Match: RADL1_ARATH (Protein RADIALIS-like 1 OS=Arabidopsis thaliana GN=RL1 PE=2 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 5.0e-22
Identity = 50/76 (65.79%), Postives = 58/76 (76.32%), Query Frame = 1 

Query: 2  ASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDV 61
          +SMSS  S +WT  QNK FE ALA YDQDTP RW NVAK VG KT EEVKRHY+LL+ D+
Sbjct: 4  SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDI 63

Query: 62 KHIESGNVPFPYPKTS 78
            IE+G+VPFP  +TS
Sbjct: 64 NSIENGHVPFPNYRTS 79

[Close]
BLAST of CSPI07G11740 vs. Swiss-Prot
Match: RADL2_ARATH (Protein RADIALIS-like 2 OS=Arabidopsis thaliana GN=RL2 PE=2 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.1e-21
Identity = 52/85 (61.18%), Postives = 63/85 (74.12%), Query Frame = 1 

Query: 3  SMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVK 62
          SMSS+GS +WT  QNK FE ALA YDQDTP+RW NVA+AVG KT EE KR Y LL+ D++
Sbjct: 5  SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIE 64

Query: 63 HIESGNVPFP-YPKTSSNDDLPRKR 87
           IE+G+VPFP Y  T+ N +  R R
Sbjct: 65 SIENGHVPFPDYKTTTGNSNRGRLR 89

[Close]
BLAST of CSPI07G11740 vs. Swiss-Prot
Match: RADL3_ARATH (Protein RADIALIS-like 3 OS=Arabidopsis thaliana GN=RL3 PE=2 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.8e-19
Identity = 46/80 (57.50%), Postives = 59/80 (73.75%), Query Frame = 1 

Query: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD 60
          MAS S   S +WT+ +NK FE ALA YDQDTP+RW NVA+AVG K+ EEV+RHY+LL+ D
Sbjct: 1  MASNSMSSSASWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELLIRD 60

Query: 61 VKHIESGNVPFPYPKTSSND 81
          V  IESG  P P  +++ N+
Sbjct: 61 VNDIESGRYPHPNYRSNGNN 80

[Close]
BLAST of CSPI07G11740 vs. Swiss-Prot
Match: RADL5_ARATH (Protein RADIALIS-like 5 OS=Arabidopsis thaliana GN=RL5 PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.2e-18
Identity = 46/76 (60.53%), Postives = 55/76 (72.37%), Query Frame = 1 

Query: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD 60
          MAS S   S++WT  QNK FE ALA YD+DTP+RW NVAKAVG K+ EEVKRHY +L+ D
Sbjct: 1  MASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVED 60

Query: 61 VKHIESGNVPFPYPKT 77
          + +IE   VP P  KT
Sbjct: 61 LMNIEQDLVPLPKYKT 76

[Close]
BLAST of CSPI07G11740 vs. Swiss-Prot
Match: RADL6_ARATH (Protein RADIALIS-like 6 OS=Arabidopsis thaliana GN=RL6 PE=2 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 2.6e-18
Identity = 47/76 (61.84%), Postives = 55/76 (72.37%), Query Frame = 1 

Query: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD 60
          MAS S    + WT  QNK FE ALA YD+DTP+RW NVAKAVG KT EEVKRHY +L+ D
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 VKHIESGNVPFPYPKT 77
          + +IE+G VP P  KT
Sbjct: 61 LINIETGRVPLPNYKT 76

[Close]
BLAST of CSPI07G11740 vs. TrEMBL
Match: A0A0A0K3K0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G168060 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 2.4e-26
Identity = 58/77 (75.32%), Postives = 68/77 (88.31%), Query Frame = 1 

Query: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD 60
          MASMS+HGS+AWT ++NK FE ALA YD+DTPERW+NVAKA+G KTEEEVKRHYQLLL D
Sbjct: 1  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VKHIESGNVPFPYPKTS 78
          V HIESG +PFPY K++
Sbjct: 61 VNHIESGQIPFPYRKST 77

[Close]
BLAST of CSPI07G11740 vs. TrEMBL
Match: A0A0A0K344_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G169070 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 3.1e-26
Identity = 59/79 (74.68%), Postives = 66/79 (83.54%), Query Frame = 1 

Query: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD 60
          MAS+S+HGS  WT  QNK FE ALA YD+DTP+RW+NVAKA+G KTEEEVKRHYQLLL D
Sbjct: 1  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VKHIESGNVPFPYPKTSSN 80
          VKHIESG VPFPY  + SN
Sbjct: 61 VKHIESGKVPFPYRSSRSN 79

[Close]
BLAST of CSPI07G11740 vs. TrEMBL
Match: A0A0A0K348_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G170600 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.1e-23
Identity = 57/73 (78.08%), Postives = 60/73 (82.19%), Query Frame = 1 

Query: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD 60
          MASMSSHGS  WT  QNK FE ALA YDQDTP+RW+NVAKAVG KT EEVKRHY LL+ D
Sbjct: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKHIESGNVPFPY 74
          VK IESG VPFPY
Sbjct: 61 VKFIESGQVPFPY 73

[Close]
BLAST of CSPI07G11740 vs. TrEMBL
Match: A0A061E040_THECC (Homeodomain-like superfamily protein OS=Theobroma cacao GN=TCM_006883 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 7.1e-23
Identity = 55/79 (69.62%), Postives = 64/79 (81.01%), Query Frame = 1 

Query: 2  ASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDV 61
          +SMSS GS +WT  QNK FE ALA YD+DTP+RW NVAKAVG KT EEVKRHY+LL+ DV
Sbjct: 4  SSMSSRGSGSWTAKQNKDFERALAVYDKDTPDRWYNVAKAVGGKTAEEVKRHYELLVQDV 63

Query: 62 KHIESGNVPFPYPKTSSND 81
          KHIESG VPFP  +TS+ +
Sbjct: 64 KHIESGQVPFPNYRTSAGN 82

[Close]
BLAST of CSPI07G11740 vs. TrEMBL
Match: B9HRM8_POPTR (Myb family transcription factor family protein OS=Populus trichocarpa GN=POPTR_0009s11930g PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 2.7e-22
Identity = 55/79 (69.62%), Postives = 64/79 (81.01%), Query Frame = 1 

Query: 2  ASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDV 61
          +SMSS GS +WT  QNK FE ALA YD+DTP+RW NVA+AVG KT EEVKRHY+LL+ DV
Sbjct: 4  SSMSSRGSGSWTVQQNKAFERALAVYDRDTPDRWYNVARAVGGKTAEEVKRHYELLVEDV 63

Query: 62 KHIESGNVPFP-YPKTSSN 80
          KHIESG+VPFP Y  T +N
Sbjct: 64 KHIESGHVPFPNYRTTGAN 82

[Close]
BLAST of CSPI07G11740 vs. TAIR10
Match: AT4G39250.1 (AT4G39250.1 RAD-like 1)

HSP 1 Score: 104.8 bits (260), Expect = 2.8e-23
Identity = 50/76 (65.79%), Postives = 58/76 (76.32%), Query Frame = 1 

Query: 2  ASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDV 61
          +SMSS  S +WT  QNK FE ALA YDQDTP RW NVAK VG KT EEVKRHY+LL+ D+
Sbjct: 4  SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDI 63

Query: 62 KHIESGNVPFPYPKTS 78
            IE+G+VPFP  +TS
Sbjct: 64 NSIENGHVPFPNYRTS 79

[Close]
BLAST of CSPI07G11740 vs. TAIR10
Match: AT2G21650.1 (AT2G21650.1 Homeodomain-like superfamily protein)

HSP 1 Score: 103.6 bits (257), Expect = 6.3e-23
Identity = 52/85 (61.18%), Postives = 63/85 (74.12%), Query Frame = 1 

Query: 3  SMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVK 62
          SMSS+GS +WT  QNK FE ALA YDQDTP+RW NVA+AVG KT EE KR Y LL+ D++
Sbjct: 5  SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIE 64

Query: 63 HIESGNVPFP-YPKTSSNDDLPRKR 87
           IE+G+VPFP Y  T+ N +  R R
Sbjct: 65 SIENGHVPFPDYKTTTGNSNRGRLR 89

[Close]
BLAST of CSPI07G11740 vs. TAIR10
Match: AT1G19510.1 (AT1G19510.1 RAD-like 5)

HSP 1 Score: 93.6 bits (231), Expect = 6.6e-20
Identity = 46/76 (60.53%), Postives = 55/76 (72.37%), Query Frame = 1 

Query: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD 60
          MAS S   S++WT  QNK FE ALA YD+DTP+RW NVAKAVG K+ EEVKRHY +L+ D
Sbjct: 1  MASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVED 60

Query: 61 VKHIESGNVPFPYPKT 77
          + +IE   VP P  KT
Sbjct: 61 LMNIEQDLVPLPKYKT 76

[Close]
BLAST of CSPI07G11740 vs. TAIR10
Match: AT1G75250.1 (AT1G75250.1 RAD-like 6)

HSP 1 Score: 92.4 bits (228), Expect = 1.5e-19
Identity = 47/76 (61.84%), Postives = 55/76 (72.37%), Query Frame = 1 

Query: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD 60
          MAS S    + WT  QNK FE ALA YD+DTP+RW NVAKAVG KT EEVKRHY +L+ D
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 VKHIESGNVPFPYPKT 77
          + +IE+G VP P  KT
Sbjct: 61 LINIETGRVPLPNYKT 76

[Close]
BLAST of CSPI07G11740 vs. TAIR10
Match: AT2G18328.1 (AT2G18328.1 RAD-like 4)

HSP 1 Score: 87.4 bits (215), Expect = 4.7e-18
Identity = 43/72 (59.72%), Postives = 56/72 (77.78%), Query Frame = 1 

Query: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD 60
          MAS SS  +++WT  ++K FEMALA++D+DTP+RW  +A+AVG K+ EEVKRHY+LLL D
Sbjct: 1  MAS-SSMSTSSWTAREDKQFEMALAKFDKDTPDRWQKIARAVGGKSTEEVKRHYELLLRD 60

Query: 61 VKHIESGNVPFP 73
          V  IESG  P P
Sbjct: 61 VNDIESGRYPQP 71

[Close]
BLAST of CSPI07G11740 vs. NCBI nr
Match: gi|778726246|ref|XP_011659078.1| (PREDICTED: protein RADIALIS-like 2 [Cucumis sativus])

HSP 1 Score: 177.2 bits (448), Expect = 1.3e-41
Identity = 85/87 (97.70%), Postives = 85/87 (97.70%), Query Frame = 1 

Query: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD 60
          MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVK HYQLLLHD
Sbjct: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKMHYQLLLHD 60

Query: 61 VKHIESGNVPFPYPKTSSNDDLPRKRG 88
          VKHIESGNVPFPYP TSSNDDLPRKRG
Sbjct: 61 VKHIESGNVPFPYPTTSSNDDLPRKRG 87

[Close]
BLAST of CSPI07G11740 vs. NCBI nr
Match: gi|659092931|ref|XP_008447294.1| (PREDICTED: protein RADIALIS-like 2 [Cucumis melo])

HSP 1 Score: 175.3 bits (443), Expect = 4.9e-41
Identity = 84/87 (96.55%), Postives = 85/87 (97.70%), Query Frame = 1 

Query: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD 60
          MASMSSHGSNAWTKMQNKTFE ALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD
Sbjct: 1  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD 60

Query: 61 VKHIESGNVPFPYPKTSSNDDLPRKRG 88
          VKHIESGNVPFPYP TSS+DDLPRKRG
Sbjct: 61 VKHIESGNVPFPYPTTSSDDDLPRKRG 87

[Close]
BLAST of CSPI07G11740 vs. NCBI nr
Match: gi|778725452|ref|XP_011658943.1| (PREDICTED: protein RADIALIS-like 1 [Cucumis sativus])

HSP 1 Score: 125.9 bits (315), Expect = 3.4e-26
Identity = 58/77 (75.32%), Postives = 68/77 (88.31%), Query Frame = 1 

Query: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD 60
          MASMS+HGS+AWT ++NK FE ALA YD+DTPERW+NVAKA+G KTEEEVKRHYQLLL D
Sbjct: 1  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VKHIESGNVPFPYPKTS 78
          V HIESG +PFPY K++
Sbjct: 61 VNHIESGQIPFPYRKST 77

[Close]
BLAST of CSPI07G11740 vs. NCBI nr
Match: gi|449466805|ref|XP_004151116.1| (PREDICTED: protein RADIALIS-like 1 [Cucumis sativus])

HSP 1 Score: 125.6 bits (314), Expect = 4.4e-26
Identity = 59/79 (74.68%), Postives = 66/79 (83.54%), Query Frame = 1 

Query: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD 60
          MAS+S+HGS  WT  QNK FE ALA YD+DTP+RW+NVAKA+G KTEEEVKRHYQLLL D
Sbjct: 1  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VKHIESGNVPFPYPKTSSN 80
          VKHIESG VPFPY  + SN
Sbjct: 61 VKHIESGKVPFPYRSSRSN 79

[Close]
BLAST of CSPI07G11740 vs. NCBI nr
Match: gi|659092351|ref|XP_008447025.1| (PREDICTED: protein RADIALIS-like 1 [Cucumis melo])

HSP 1 Score: 125.2 bits (313), Expect = 5.8e-26
Identity = 59/79 (74.68%), Postives = 65/79 (82.28%), Query Frame = 1 

Query: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD 60
          MASMS+HGS  WT  QNK FE ALA YD+DTP+RW+NVAKA+G KTEEEVKRHYQLLL D
Sbjct: 1  MASMSAHGSGVWTAKQNKAFEKALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VKHIESGNVPFPYPKTSSN 80
          VKHIESG VPFPY  +  N
Sbjct: 61 VKHIESGKVPFPYRTSRGN 79

The following BLAST results are available for this feature:
BLAST of CSPI07G11740 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RADL1_ARATH5.0e-2265.79Protein RADIALIS-like 1 OS=Arabidopsis thaliana GN=RL1 PE=2 SV=1[more]
RADL2_ARATH1.1e-2161.18Protein RADIALIS-like 2 OS=Arabidopsis thaliana GN=RL2 PE=2 SV=1[more]
RADL3_ARATH1.8e-1957.50Protein RADIALIS-like 3 OS=Arabidopsis thaliana GN=RL3 PE=2 SV=1[more]
RADL5_ARATH1.2e-1860.53Protein RADIALIS-like 5 OS=Arabidopsis thaliana GN=RL5 PE=3 SV=1[more]
RADL6_ARATH2.6e-1861.84Protein RADIALIS-like 6 OS=Arabidopsis thaliana GN=RL6 PE=2 SV=1[more]
BLAST of CSPI07G11740 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K3K0_CUCSA2.4e-2675.32Uncharacterized protein OS=Cucumis sativus GN=Csa_7G168060 PE=4 SV=1[more]
A0A0A0K344_CUCSA3.1e-2674.68Uncharacterized protein OS=Cucumis sativus GN=Csa_7G169070 PE=4 SV=1[more]
A0A0A0K348_CUCSA1.1e-2378.08Uncharacterized protein OS=Cucumis sativus GN=Csa_7G170600 PE=4 SV=1[more]
A0A061E040_THECC7.1e-2369.62Homeodomain-like superfamily protein OS=Theobroma cacao GN=TCM_006883 PE=4 SV=1[more]
B9HRM8_POPTR2.7e-2269.62Myb family transcription factor family protein OS=Populus trichocarpa GN=POPTR_0... [more]
BLAST of CSPI07G11740 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G39250.12.8e-2365.79 RAD-like 1[more]
AT2G21650.16.3e-2361.18 Homeodomain-like superfamily protein[more]
AT1G19510.16.6e-2060.53 RAD-like 5[more]
AT1G75250.11.5e-1961.84 RAD-like 6[more]
AT2G18328.14.7e-1859.72 RAD-like 4[more]
BLAST of CSPI07G11740 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778726246|ref|XP_011659078.1|1.3e-4197.70PREDICTED: protein RADIALIS-like 2 [Cucumis sativus][more]
gi|659092931|ref|XP_008447294.1|4.9e-4196.55PREDICTED: protein RADIALIS-like 2 [Cucumis melo][more]
gi|778725452|ref|XP_011658943.1|3.4e-2675.32PREDICTED: protein RADIALIS-like 1 [Cucumis sativus][more]
gi|449466805|ref|XP_004151116.1|4.4e-2674.68PREDICTED: protein RADIALIS-like 1 [Cucumis sativus][more]
gi|659092351|ref|XP_008447025.1|5.8e-2674.68PREDICTED: protein RADIALIS-like 1 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001005SANT/Myb
IPR009057Homeobox-like_sf
IPR017877Myb-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005634 nucleus
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI07G11740.1CSPI07G11740.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001005SANT/Myb domainPFAMPF00249Myb_DNA-bindingcoord: 10..57
score: 2.
IPR001005SANT/Myb domainSMARTSM00717santcoord: 8..60
score: 1.
IPR009057Homeodomain-likeGENE3DG3DSA:1.10.10.60coord: 11..64
score: 4.
IPR009057Homeodomain-likeunknownSSF46689Homeodomain-likecoord: 10..66
score: 1.42
IPR017877Myb-like domainPROFILEPS50090MYB_LIKEcoord: 4..58
score: 6
NoneNo IPR availablePANTHERPTHR24078DNAJ HOMOLOG SUBFAMILY C MEMBERcoord: 9..71
score: 3.4
NoneNo IPR availablePANTHERPTHR24078:SF177PROTEIN DNJ-23-RELATEDcoord: 9..71
score: 3.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI07G11740Cla015917Watermelon (97103) v1cpiwmB625
CSPI07G11740MELO3C012500Melon (DHL92) v3.5.1cpimeB541
CSPI07G11740ClCG02G004920Watermelon (Charleston Gray)cpiwcgB577
CSPI07G11740Lsi11G011060Bottle gourd (USVL1VR-Ls)cpilsiB508
CSPI07G11740Lsi10G003670Bottle gourd (USVL1VR-Ls)cpilsiB501
CSPI07G11740MELO3C012500.2Melon (DHL92) v3.6.1cpimedB526
CSPI07G11740CsaV3_7G023660Cucumber (Chinese Long) v3cpicucB414
CSPI07G11740Cla97C02G031860Watermelon (97103) v2cpiwmbB555
CSPI07G11740Bhi10G001619Wax gourdcpiwgoB696
CSPI07G11740Bhi05G001102Wax gourdcpiwgoB675
CSPI07G11740Cucsa.240590Cucumber (Gy14) v1cgycpiB364
CSPI07G11740CmaCh19G006700Cucurbita maxima (Rimu)cmacpiB536
CSPI07G11740CmaCh11G010940Cucurbita maxima (Rimu)cmacpiB152
CSPI07G11740CmoCh19G006820Cucurbita moschata (Rifu)cmocpiB527
CSPI07G11740CmoCh11G011190Cucurbita moschata (Rifu)cmocpiB140
CSPI07G11740Cp4.1LG15g05490Cucurbita pepo (Zucchini)cpecpiB261
CSPI07G11740Cp4.1LG04g00900Cucurbita pepo (Zucchini)cpecpiB700
CSPI07G11740CsGy7G010930Cucumber (Gy14) v2cgybcpiB331
CSPI07G11740Carg24682Silver-seed gourdcarcpiB0202
CSPI07G11740Carg19405Silver-seed gourdcarcpiB0349
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI07G11740Wax gourdcpiwgoB718
CSPI07G11740Cucurbita maxima (Rimu)cmacpiB500
CSPI07G11740Cucurbita moschata (Rifu)cmocpiB490
CSPI07G11740Cucumber (Chinese Long) v2cpicuB354
CSPI07G11740Bottle gourd (USVL1VR-Ls)cpilsiB517