Lsi11G011060 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi11G011060
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionMyb family transcription factor family protein
Locationchr11 : 19259665 .. 19259931 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTTCAATGTCCTCTCATGGGTCAAATAATGCATGGACTGCAATGCAAAACAAGACATTTGAAAGGGCTTTGGCAGTGTATGATCAAGACACTCCTGAAAGATGGCTGAATGTTGCTAAGGCTGTTGGTGAAAAAACTGAAGAGGAAGTCAAGTGGCATTACCAACTTCTTCTTGAAGATGTCAAATGTATTGAGTCTGGCAATGTCCCTTTTCCCTATCCATCCTCTAGTGATCATTTGCCAAGGCAAAGAGGTAATTTATAA

mRNA sequence

ATGACTTCAATGTCCTCTCATGGGTCAAATAATGCATGGACTGCAATGCAAAACAAGACATTTGAAAGGGCTTTGGCAGTGTATGATCAAGACACTCCTGAAAGATGGCTGAATGTTGCTAAGGCTGTTGGTGAAAAAACTGAAGAGGAAGTCAAGTGGCATTACCAACTTCTTCTTGAAGATGTCAAATGTATTGAGTCTGGCAATGTCCCTTTTCCCTATCCATCCTCTAGTGATCATTTGCCAAGGCAAAGAGGTAATTTATAA

Coding sequence (CDS)

ATGACTTCAATGTCCTCTCATGGGTCAAATAATGCATGGACTGCAATGCAAAACAAGACATTTGAAAGGGCTTTGGCAGTGTATGATCAAGACACTCCTGAAAGATGGCTGAATGTTGCTAAGGCTGTTGGTGAAAAAACTGAAGAGGAAGTCAAGTGGCATTACCAACTTCTTCTTGAAGATGTCAAATGTATTGAGTCTGGCAATGTCCCTTTTCCCTATCCATCCTCTAGTGATCATTTGCCAAGGCAAAGAGGTAATTTATAA

Protein sequence

MTSMSSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFPYPSSSDHLPRQRGNL
Homology
[Close]
BLAST of Lsi11G011060 vs. Swiss-Prot
Match: RADL1_ARATH (Protein RADIALIS-like 1 OS=Arabidopsis thaliana GN=RL1 PE=2 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.2e-20
Identity = 48/72 (66.67%), Postives = 58/72 (80.56%), Query Frame = 1 

Query: 2  TSMSSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLED 61
          +SMSS  S+ +WTA QNK FE+ALA YDQDTP RW NVAK VG KT EEVK HY+LL++D
Sbjct: 4  SSMSSQ-SSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQD 63

Query: 62 VKCIESGNVPFP 74
          +  IE+G+VPFP
Sbjct: 64 INSIENGHVPFP 74

[Close]
BLAST of Lsi11G011060 vs. Swiss-Prot
Match: RAD_ANTMA (Transcription factor RADIALIS OS=Antirrhinum majus GN=RAD PE=1 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.2e-20
Identity = 45/69 (65.22%), Postives = 56/69 (81.16%), Query Frame = 1 

Query: 5  SSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKC 64
          S+ GS   W+A +NK FERALAVYD+DTP+RW NVA+AV  +T EEVK HY++L+ED+K 
Sbjct: 3  STRGSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKY 62

Query: 65 IESGNVPFP 74
          IESG VPFP
Sbjct: 63 IESGKVPFP 71

[Close]
BLAST of Lsi11G011060 vs. Swiss-Prot
Match: RADL2_ARATH (Protein RADIALIS-like 2 OS=Arabidopsis thaliana GN=RL2 PE=2 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.6e-20
Identity = 51/84 (60.71%), Postives = 64/84 (76.19%), Query Frame = 1 

Query: 3  SMSSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDV 62
          SMSS+GS + WT  QNK FERALAVYDQDTP+RW NVA+AVG KT EE K  Y LL+ D+
Sbjct: 5  SMSSYGSGS-WTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDI 64

Query: 63 KCIESGNVPFP-YPSSSDHLPRQR 86
          + IE+G+VPFP Y +++ +  R R
Sbjct: 65 ESIENGHVPFPDYKTTTGNSNRGR 87

[Close]
BLAST of Lsi11G011060 vs. Swiss-Prot
Match: RADL5_ARATH (Protein RADIALIS-like 5 OS=Arabidopsis thaliana GN=RL5 PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 3.1e-19
Identity = 47/82 (57.32%), Postives = 59/82 (71.95%), Query Frame = 1 

Query: 5  SSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKC 64
          SS  S+++WT+ QNK FERALAVYD+DTP+RW NVAKAVG K+ EEVK HY +L+ED+  
Sbjct: 4  SSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVEDLMN 63

Query: 65 IESGNVPFPYPSSSDHLPRQRG 87
          IE   VP P   + D   + RG
Sbjct: 64 IEQDLVPLPKYKTVDVGSKSRG 85

[Close]
BLAST of Lsi11G011060 vs. Swiss-Prot
Match: RADL6_ARATH (Protein RADIALIS-like 6 OS=Arabidopsis thaliana GN=RL6 PE=2 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.0e-18
Identity = 45/69 (65.22%), Postives = 53/69 (76.81%), Query Frame = 1 

Query: 5  SSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKC 64
          +S  S + WT  QNK FERALAVYD+DTP+RW NVAKAVG KT EEVK HY +L+ED+  
Sbjct: 4  NSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLIN 63

Query: 65 IESGNVPFP 74
          IE+G VP P
Sbjct: 64 IETGRVPLP 72

[Close]
BLAST of Lsi11G011060 vs. TrEMBL
Match: A0A0A0K3K0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G168060 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 4.4e-25
Identity = 58/78 (74.36%), Postives = 68/78 (87.18%), Query Frame = 1 

Query: 1  MTSMSSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLE 60
          M SMS+HGS+ AWTA++NK FE+ALA+YD+DTPERWLNVAKA+G KTEEEVK HYQLLLE
Sbjct: 1  MASMSAHGSS-AWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLE 60

Query: 61 DVKCIESGNVPFPYPSSS 79
          DV  IESG +PFPY  S+
Sbjct: 61 DVNHIESGQIPFPYRKST 77

[Close]
BLAST of Lsi11G011060 vs. TrEMBL
Match: A0A0A0K344_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G169070 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.7e-24
Identity = 59/77 (76.62%), Postives = 65/77 (84.42%), Query Frame = 1 

Query: 1  MTSMSSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLE 60
          M S+S+HGS   WTA QNK FE ALA+YD+DTP+RWLNVAKA+G KTEEEVK HYQLLLE
Sbjct: 1  MASLSAHGSG-VWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLE 60

Query: 61 DVKCIESGNVPFPYPSS 78
          DVK IESG VPFPY SS
Sbjct: 61 DVKHIESGKVPFPYRSS 76

[Close]
BLAST of Lsi11G011060 vs. TrEMBL
Match: A0A0A0K348_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G170600 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 6.4e-24
Identity = 59/77 (76.62%), Postives = 63/77 (81.82%), Query Frame = 1 

Query: 1  MTSMSSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLE 60
          M SMSSHGS   WT  QNK FE+ALAVYDQDTP+RWLNVAKAVG KT EEVK HY LL+E
Sbjct: 1  MASMSSHGSGT-WTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVE 60

Query: 61 DVKCIESGNVPFPYPSS 78
          DVK IESG VPFPY +S
Sbjct: 61 DVKFIESGQVPFPYRTS 76

[Close]
BLAST of Lsi11G011060 vs. TrEMBL
Match: V4SHK2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029663mg PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.2e-22
Identity = 56/90 (62.22%), Postives = 71/90 (78.89%), Query Frame = 1 

Query: 2  TSMSSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLED 61
          +SMSS GS+ +WTA QNK FERALAVYD+DTP+RW NVA+AVG KT +EVK HY+LL+ED
Sbjct: 4  SSMSSRGSSGSWTAEQNKAFERALAVYDKDTPDRWYNVARAVGGKTADEVKKHYELLVED 63

Query: 62 VKCIESGNVPFP---YPSSSDHLPRQRGNL 89
          +K IESG+VPFP    PS + ++  +  NL
Sbjct: 64 IKHIESGHVPFPKYRTPSGNGNVGERMKNL 93

[Close]
BLAST of Lsi11G011060 vs. TrEMBL
Match: A0A0A0K3K5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G169590 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 3.5e-22
Identity = 54/76 (71.05%), Postives = 62/76 (81.58%), Query Frame = 1 

Query: 1  MTSMSSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLE 60
          M SM++HG +  WT  QNK FE+ALAVYD+DTPERWLNVAKA+G KTEEEVK HYQLL+E
Sbjct: 1  MASMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVE 60

Query: 61 DVKCIESGNVPFPYPS 77
          DVK IESG +  P PS
Sbjct: 61 DVKHIESGRLIEPAPS 76

[Close]
BLAST of Lsi11G011060 vs. TAIR10
Match: AT4G39250.1 (AT4G39250.1 RAD-like 1)

HSP 1 Score: 100.1 bits (248), Expect = 7.0e-22
Identity = 48/72 (66.67%), Postives = 58/72 (80.56%), Query Frame = 1 

Query: 2  TSMSSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLED 61
          +SMSS  S+ +WTA QNK FE+ALA YDQDTP RW NVAK VG KT EEVK HY+LL++D
Sbjct: 4  SSMSSQ-SSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQD 63

Query: 62 VKCIESGNVPFP 74
          +  IE+G+VPFP
Sbjct: 64 INSIENGHVPFP 74

[Close]
BLAST of Lsi11G011060 vs. TAIR10
Match: AT2G21650.1 (AT2G21650.1 Homeodomain-like superfamily protein)

HSP 1 Score: 99.8 bits (247), Expect = 9.2e-22
Identity = 51/84 (60.71%), Postives = 64/84 (76.19%), Query Frame = 1 

Query: 3  SMSSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDV 62
          SMSS+GS + WT  QNK FERALAVYDQDTP+RW NVA+AVG KT EE K  Y LL+ D+
Sbjct: 5  SMSSYGSGS-WTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDI 64

Query: 63 KCIESGNVPFP-YPSSSDHLPRQR 86
          + IE+G+VPFP Y +++ +  R R
Sbjct: 65 ESIENGHVPFPDYKTTTGNSNRGR 87

[Close]
BLAST of Lsi11G011060 vs. TAIR10
Match: AT1G19510.1 (AT1G19510.1 RAD-like 5)

HSP 1 Score: 95.5 bits (236), Expect = 1.7e-20
Identity = 47/82 (57.32%), Postives = 59/82 (71.95%), Query Frame = 1 

Query: 5  SSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKC 64
          SS  S+++WT+ QNK FERALAVYD+DTP+RW NVAKAVG K+ EEVK HY +L+ED+  
Sbjct: 4  SSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVEDLMN 63

Query: 65 IESGNVPFPYPSSSDHLPRQRG 87
          IE   VP P   + D   + RG
Sbjct: 64 IEQDLVPLPKYKTVDVGSKSRG 85

[Close]
BLAST of Lsi11G011060 vs. TAIR10
Match: AT1G75250.1 (AT1G75250.1 RAD-like 6)

HSP 1 Score: 92.8 bits (229), Expect = 1.1e-19
Identity = 45/69 (65.22%), Postives = 53/69 (76.81%), Query Frame = 1 

Query: 5  SSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKC 64
          +S  S + WT  QNK FERALAVYD+DTP+RW NVAKAVG KT EEVK HY +L+ED+  
Sbjct: 4  NSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLIN 63

Query: 65 IESGNVPFP 74
          IE+G VP P
Sbjct: 64 IETGRVPLP 72

[Close]
BLAST of Lsi11G011060 vs. TAIR10
Match: AT2G18328.1 (AT2G18328.1 RAD-like 4)

HSP 1 Score: 84.0 bits (206), Expect = 5.2e-17
Identity = 40/69 (57.97%), Postives = 51/69 (73.91%), Query Frame = 1 

Query: 5  SSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKC 64
          SS  S ++WTA ++K FE ALA +D+DTP+RW  +A+AVG K+ EEVK HY+LLL DV  
Sbjct: 3  SSSMSTSSWTAREDKQFEMALAKFDKDTPDRWQKIARAVGGKSTEEVKRHYELLLRDVND 62

Query: 65 IESGNVPFP 74
          IESG  P P
Sbjct: 63 IESGRYPQP 71

[Close]
BLAST of Lsi11G011060 vs. NCBI nr
Match: gi|778726246|ref|XP_011659078.1| (PREDICTED: protein RADIALIS-like 2 [Cucumis sativus])

HSP 1 Score: 144.4 bits (363), Expect = 9.2e-32
Identity = 74/88 (84.09%), Postives = 77/88 (87.50%), Query Frame = 1 

Query: 1  MTSMSSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLE 60
          M SMSSHGSN AWT MQNKTFE ALA YDQDTPERW+NVAKAVGEKTEEEVK HYQLLL 
Sbjct: 1  MASMSSHGSN-AWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKMHYQLLLH 60

Query: 61 DVKCIESGNVPFPYP--SSSDHLPRQRG 87
          DVK IESGNVPFPYP  SS+D LPR+RG
Sbjct: 61 DVKHIESGNVPFPYPTTSSNDDLPRKRG 87

[Close]
BLAST of Lsi11G011060 vs. NCBI nr
Match: gi|659092931|ref|XP_008447294.1| (PREDICTED: protein RADIALIS-like 2 [Cucumis melo])

HSP 1 Score: 144.4 bits (363), Expect = 9.2e-32
Identity = 74/88 (84.09%), Postives = 77/88 (87.50%), Query Frame = 1 

Query: 1  MTSMSSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLE 60
          M SMSSHGSN AWT MQNKTFE+ALA YDQDTPERW+NVAKAVGEKTEEEVK HYQLLL 
Sbjct: 1  MASMSSHGSN-AWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLH 60

Query: 61 DVKCIESGNVPFPYP--SSSDHLPRQRG 87
          DVK IESGNVPFPYP  SS D LPR+RG
Sbjct: 61 DVKHIESGNVPFPYPTTSSDDDLPRKRG 87

[Close]
BLAST of Lsi11G011060 vs. NCBI nr
Match: gi|778725452|ref|XP_011658943.1| (PREDICTED: protein RADIALIS-like 1 [Cucumis sativus])

HSP 1 Score: 121.7 bits (304), Expect = 6.4e-25
Identity = 58/78 (74.36%), Postives = 68/78 (87.18%), Query Frame = 1 

Query: 1  MTSMSSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLE 60
          M SMS+HGS+ AWTA++NK FE+ALA+YD+DTPERWLNVAKA+G KTEEEVK HYQLLLE
Sbjct: 1  MASMSAHGSS-AWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLE 60

Query: 61 DVKCIESGNVPFPYPSSS 79
          DV  IESG +PFPY  S+
Sbjct: 61 DVNHIESGQIPFPYRKST 77

[Close]
BLAST of Lsi11G011060 vs. NCBI nr
Match: gi|659092351|ref|XP_008447025.1| (PREDICTED: protein RADIALIS-like 1 [Cucumis melo])

HSP 1 Score: 120.6 bits (301), Expect = 1.4e-24
Identity = 59/77 (76.62%), Postives = 66/77 (85.71%), Query Frame = 1 

Query: 1  MTSMSSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLE 60
          M SMS+HGS   WTA QNK FE+ALA+YD+DTP+RWLNVAKA+G KTEEEVK HYQLLLE
Sbjct: 1  MASMSAHGSG-VWTAKQNKAFEKALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLE 60

Query: 61 DVKCIESGNVPFPYPSS 78
          DVK IESG VPFPY +S
Sbjct: 61 DVKHIESGKVPFPYRTS 76

[Close]
BLAST of Lsi11G011060 vs. NCBI nr
Match: gi|659092346|ref|XP_008447024.1| (PREDICTED: protein RADIALIS-like 1 [Cucumis melo])

HSP 1 Score: 120.2 bits (300), Expect = 1.9e-24
Identity = 60/79 (75.95%), Postives = 64/79 (81.01%), Query Frame = 1 

Query: 1  MTSMSSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLE 60
          M SMSSHGS   WT  QNK FE+ALAVYDQDTP+RWLNVAKAVG KT EEVK HY LL+E
Sbjct: 1  MASMSSHGSGT-WTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVE 60

Query: 61 DVKCIESGNVPFPYPSSSD 80
          DVK IESG VPFPY +S D
Sbjct: 61 DVKFIESGQVPFPYRTSGD 78

The following BLAST results are available for this feature:
BLAST of Lsi11G011060 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RADL1_ARATH1.2e-2066.67Protein RADIALIS-like 1 OS=Arabidopsis thaliana GN=RL1 PE=2 SV=1[more]
RAD_ANTMA1.2e-2065.22Transcription factor RADIALIS OS=Antirrhinum majus GN=RAD PE=1 SV=1[more]
RADL2_ARATH1.6e-2060.71Protein RADIALIS-like 2 OS=Arabidopsis thaliana GN=RL2 PE=2 SV=1[more]
RADL5_ARATH3.1e-1957.32Protein RADIALIS-like 5 OS=Arabidopsis thaliana GN=RL5 PE=3 SV=1[more]
RADL6_ARATH2.0e-1865.22Protein RADIALIS-like 6 OS=Arabidopsis thaliana GN=RL6 PE=2 SV=1[more]
BLAST of Lsi11G011060 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K3K0_CUCSA4.4e-2574.36Uncharacterized protein OS=Cucumis sativus GN=Csa_7G168060 PE=4 SV=1[more]
A0A0A0K344_CUCSA1.7e-2476.62Uncharacterized protein OS=Cucumis sativus GN=Csa_7G169070 PE=4 SV=1[more]
A0A0A0K348_CUCSA6.4e-2476.62Uncharacterized protein OS=Cucumis sativus GN=Csa_7G170600 PE=4 SV=1[more]
V4SHK2_9ROSI1.2e-2262.22Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029663mg PE=4 SV=1[more]
A0A0A0K3K5_CUCSA3.5e-2271.05Uncharacterized protein OS=Cucumis sativus GN=Csa_7G169590 PE=4 SV=1[more]
BLAST of Lsi11G011060 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G39250.17.0e-2266.67 RAD-like 1[more]
AT2G21650.19.2e-2260.71 Homeodomain-like superfamily protein[more]
AT1G19510.11.7e-2057.32 RAD-like 5[more]
AT1G75250.11.1e-1965.22 RAD-like 6[more]
AT2G18328.15.2e-1757.97 RAD-like 4[more]
BLAST of Lsi11G011060 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778726246|ref|XP_011659078.1|9.2e-3284.09PREDICTED: protein RADIALIS-like 2 [Cucumis sativus][more]
gi|659092931|ref|XP_008447294.1|9.2e-3284.09PREDICTED: protein RADIALIS-like 2 [Cucumis melo][more]
gi|778725452|ref|XP_011658943.1|6.4e-2574.36PREDICTED: protein RADIALIS-like 1 [Cucumis sativus][more]
gi|659092351|ref|XP_008447025.1|1.4e-2476.62PREDICTED: protein RADIALIS-like 1 [Cucumis melo][more]
gi|659092346|ref|XP_008447024.1|1.9e-2475.95PREDICTED: protein RADIALIS-like 1 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR009057Homeobox-like_sf
IPR001005SANT/Myb
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0000785 chromatin
cellular_component GO:0005634 nucleus
cellular_component GO:0005575 cellular_component
molecular_function GO:0003682 chromatin binding
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi11G011060.1Lsi11G011060.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001005SANT/Myb domainSMARTSM00717santcoord: 9..61
score: 6.
IPR009057Homeodomain-likeunknownSSF46689Homeodomain-likecoord: 11..67
score: 3.1
NoneNo IPR availablePANTHERPTHR24078DNAJ HOMOLOG SUBFAMILY C MEMBERcoord: 13..72
score: 4.2
NoneNo IPR availablePANTHERPTHR24078:SF177PROTEIN DNJ-23-RELATEDcoord: 13..72
score: 4.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi11G011060Csa2G247060Cucumber (Chinese Long) v2culsiB102
Lsi11G011060CSPI02G12200Wild cucumber (PI 183967)cpilsiB097
Lsi11G011060CSPI07G11740Wild cucumber (PI 183967)cpilsiB508
Lsi11G011060Cucsa.377630Cucumber (Gy14) v1cgylsiB610
Lsi11G011060Cucsa.240590Cucumber (Gy14) v1cgylsiB396
Lsi11G011060CmaCh19G006700Cucurbita maxima (Rimu)cmalsiB472
Lsi11G011060CmaCh20G008500Cucurbita maxima (Rimu)cmalsiB514
Lsi11G011060CmaCh02G003970Cucurbita maxima (Rimu)cmalsiB562
Lsi11G011060CmaCh11G010940Cucurbita maxima (Rimu)cmalsiB103
Lsi11G011060CmoCh19G006820Cucurbita moschata (Rifu)cmolsiB457
Lsi11G011060CmoCh20G008590Cucurbita moschata (Rifu)cmolsiB500
Lsi11G011060CmoCh02G004030Cucurbita moschata (Rifu)cmolsiB545
Lsi11G011060CmoCh11G011190Cucurbita moschata (Rifu)cmolsiB090
Lsi11G011060Cla016559Watermelon (97103) v1lsiwmB111
Lsi11G011060MELO3C012500Melon (DHL92) v3.5.1lsimeB096
Lsi11G011060ClCG11G004400Watermelon (Charleston Gray)lsiwcgB085
Lsi11G011060MELO3C012500.2Melon (DHL92) v3.6.1lsimedB102
Lsi11G011060Cla97C02G031880Watermelon (97103) v2lsiwmbB086
Lsi11G011060Bhi05G001102Wax gourdlsiwgoB115
Lsi11G011060Cp4.1LG04g00900Cucurbita pepo (Zucchini)cpelsiB532
Lsi11G011060Cp4.1LG15g05490Cucurbita pepo (Zucchini)cpelsiB199
Lsi11G011060CsGy7G000010Cucumber (Gy14) v2cgyblsiB462
Lsi11G011060CsGy7G010930Cucumber (Gy14) v2cgyblsiB464
Lsi11G011060Carg24682Silver-seed gourdcarlsiB157
Lsi11G011060Carg19405Silver-seed gourdcarlsiB290
Lsi11G011060CsaV3_7G000010Cucumber (Chinese Long) v3cuclsiB529
Lsi11G011060CsaV3_7G023660Cucumber (Chinese Long) v3cuclsiB531
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi11G011060Watermelon (Charleston Gray)lsiwcgB097
Lsi11G011060Watermelon (97103) v1lsiwmB106
Lsi11G011060Cucumber (Gy14) v2cgyblsiB090
Lsi11G011060Melon (DHL92) v3.6.1lsimedB090
Lsi11G011060Silver-seed gourdcarlsiB809
Lsi11G011060Cucumber (Chinese Long) v3cuclsiB109
Lsi11G011060Watermelon (97103) v2lsiwmbB080
Lsi11G011060Wax gourdlsiwgoB128
Lsi11G011060Bottle gourd (USVL1VR-Ls)lsilsiB021
Lsi11G011060Cucumber (Gy14) v1cgylsiB146
Lsi11G011060Cucurbita pepo (Zucchini)cpelsiB231
Lsi11G011060Cucurbita pepo (Zucchini)cpelsiB605
Lsi11G011060Melon (DHL92) v3.5.1lsimeB086