CsaV3_7G000010 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_7G000010
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Protein RADIALIS-like
Location	chr7 : 79336 .. 80699 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAGATCTCACCCTTTGGCCCCCAACTTGTGGTTCGTTACCCCTCTAGAATTCCTCTTATAAATACCAGCTAAGGTGTCTCTTCTTTCCCACAAATCCCATTCAGATCCTTTTTCCTTAGAACAGAAATATTGAATTCTTTTTATTCTAACCCATTTTTTTTCTCTAGTTTTGCTCTCTCCATTATTTGAAACCCAATTAAAGTTAGAAATATACATTCAAGAAATTAAACTATGGCCTCATTGTCAGCTCATGGGTCAGGTGTATGGACTGCAAAGCAAAACAAGGCATTTGAAGAAGCTTTGGCAATGTATGATAAAGACACACCTGATAGATGGTTGAATGTTGCAAAAGCCATTGGTGGGAAAACTGAAGAGGAAGTCAAAAGGCATTACCAACTTCTTCTGGAGGATGTTAAGCATATTGAGTCGGGCAAAGTTCCTTTTCCTTACAGAAGCTCAAGAAGCAATTAATTGCTACTAACATATGATCAAAAGATGGAGGTAATTTAGTTTCATTTCGTGTCTACTTGATAATATTTTTTTACCTAAACTTTGATAAAACGTTTTTTAAATTTTACGTATACAAATTTAAGAAACAACAAATTCAATAATAATTGTCATGAAATGCCATTTTTCCGTTTGTTGTTTCCAATGTTAAACTTTAAAATATTATTTTCATGAAAACTTTTTACTCATTTTGTTATTTAAAGATTAGAAACTCGGTTATGCTTCTCGAGAAAACAAGAAACAATATATGAGAAATAAGAAACAATTTAAATGAGAGTTGAAATGTAATTTTAGAAAATGAAAAAGATATACAATACATATTTTTTGAAATTAAAACAATAAAATTCGAGACTTATTCTATGACAAAGTCTTTTTAACCATTTGACTCTTTATCTTATTCTGAAGCCACAAATATTATATCCTTTATTCACACTTCACAGCCCATAGTTTCATTATCAATGAACAGTGACCTCTTCGTTTCTCATAGATTTAAAGCCAGATTCAGAGACAAAGAGAAAGACAATAAAATCTTTTCTAATAATTGAGAGACGACAAAATTGTCTTGTATTAAAGTATTGATATAATTAAATATATCTGTTTTCCTTTGACCTTTTTTCAGGATGAGAAAGATGAAGTTGAATGAAGCCAGGTGCAGTACTGGAAGAATAAAAAGGAAAGAGCCATTTTCTTGCTGTTGCACCATTTTCTTCTTTTCTAACAAAACAGCAATATATATATAATATATATTTGAAGTTCCTTATTGTATCTTTTCAAATCCAATTGTAATGCTCAAATGAATAAGCTTTTATGAATTAAACCATCAATATAATGATTTATATTGAGATTGAAGAGGCC

mRNA sequence

ATGGCCTCATTGTCAGCTCATGGGTCAGGTGTATGGACTGCAAAGCAAAACAAGGCATTTGAAGAAGCTTTGGCAATGTATGATAAAGACACACCTGATAGATGGTTGAATGTTGCAAAAGCCATTGGTGGGAAAACTGAAGAGGAAGTCAAAAGGCATTACCAACTTCTTCTGGAGGATGTTAAGCATATTGAGTCGGGCAAAGTTCCTTTTCCTTACAGAAGCTCAAGAAGCAATTAA

Coding sequence (CDS)

ATGGCCTCATTGTCAGCTCATGGGTCAGGTGTATGGACTGCAAAGCAAAACAAGGCATTTGAAGAAGCTTTGGCAATGTATGATAAAGACACACCTGATAGATGGTTGAATGTTGCAAAAGCCATTGGTGGGAAAACTGAAGAGGAAGTCAAAAGGCATTACCAACTTCTTCTGGAGGATGTTAAGCATATTGAGTCGGGCAAAGTTCCTTTTCCTTACAGAAGCTCAAGAAGCAATTAA

Protein sequence

MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYRSSRSN

Homology

[Close]

BLAST of CsaV3_7G000010 vs. NCBI nr
Match: XP_004151116.1 (PREDICTED: protein RADIALIS-like 1 [Cucumis sativus] >KGN44075.1 hypothetical protein Csa_7G169070 [Cucumis sativus])

HSP 1 Score: 164.9 bits (416), Expect = 1.2e-37
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60
          MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED
Sbjct: 1  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VKHIESGKVPFPYRSSRSN 80
          VKHIESGKVPFPYRSSRSN
Sbjct: 61 VKHIESGKVPFPYRSSRSN 79

[Close]

BLAST of CsaV3_7G000010 vs. NCBI nr
Match: XP_008447025.1 (PREDICTED: protein RADIALIS-like 1 [Cucumis melo])

HSP 1 Score: 159.8 bits (403), Expect = 3.7e-36
Identity = 75/79 (94.94%), Postives = 78/79 (98.73%), Query Frame = 0


Query: 1  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60
          MAS+SAHGSGVWTAKQNKAFE+ALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED
Sbjct: 1  MASMSAHGSGVWTAKQNKAFEKALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VKHIESGKVPFPYRSSRSN 80
          VKHIESGKVPFPYR+SR N
Sbjct: 61 VKHIESGKVPFPYRTSRGN 79

[Close]

BLAST of CsaV3_7G000010 vs. NCBI nr
Match: XP_022952073.1 (protein RADIALIS-like 1 [Cucurbita moschata] >XP_022972518.1 protein RADIALIS-like 1 [Cucurbita maxima] >XP_023554705.1 protein RADIALIS-like 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 154.5 bits (389), Expect = 1.6e-34
Identity = 72/79 (91.14%), Postives = 77/79 (97.47%), Query Frame = 0


Query: 1  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60
          MAS+SAHGSGVWTAKQNKAFEEALAMYD+D PDRWLNVAKAIGGKTEEEVKRHYQ+L+ED
Sbjct: 1  MASMSAHGSGVWTAKQNKAFEEALAMYDQDRPDRWLNVAKAIGGKTEEEVKRHYQVLVED 60

Query: 61 VKHIESGKVPFPYRSSRSN 80
          VKHIESGKVPFPYRSSR +
Sbjct: 61 VKHIESGKVPFPYRSSRGS 79

[Close]

BLAST of CsaV3_7G000010 vs. NCBI nr
Match: XP_011658943.1 (PREDICTED: protein RADIALIS-like 1 [Cucumis sativus] >KGN44073.1 hypothetical protein Csa_7G168060 [Cucumis sativus])

HSP 1 Score: 139.8 bits (351), Expect = 4.0e-30
Identity = 64/76 (84.21%), Postives = 71/76 (93.42%), Query Frame = 0


Query: 1  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60
          MAS+SAHGS  WTA +NKAFE+ALA+YDKDTP+RWLNVAKAIGGKTEEEVKRHYQLLLED
Sbjct: 1  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VKHIESGKVPFPYRSS 77
          V HIESG++PFPYR S
Sbjct: 61 VNHIESGQIPFPYRKS 76

[Close]

BLAST of CsaV3_7G000010 vs. NCBI nr
Match: XP_022933530.1 (protein RADIALIS-like 1 [Cucurbita moschata])

HSP 1 Score: 139.0 bits (349), Expect = 6.8e-30
Identity = 63/76 (82.89%), Postives = 72/76 (94.74%), Query Frame = 0


Query: 1  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60
          MAS+S+HGS  WTAKQNKAFEEALA YD+DTPDRWLNVA+A+GGKTEEEVKRHYQLL+ED
Sbjct: 1  MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVED 60

Query: 61 VKHIESGKVPFPYRSS 77
          VK IESG+VP+PYR+S
Sbjct: 61 VKFIESGRVPYPYRNS 76

[Close]

BLAST of CsaV3_7G000010 vs. TAIR10
Match: AT4G39250.1 (RAD-like 1)

HSP 1 Score: 114.0 bits (284), Expect = 4.3e-26
Identity = 52/76 (68.42%), Postives = 65/76 (85.53%), Query Frame = 0


Query: 2  ASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDV 61
          +S+S+  SG WTAKQNKAFE+ALA YD+DTP+RW NVAK +GGKT EEVKRHY+LL++D+
Sbjct: 4  SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDI 63

Query: 62 KHIESGKVPFP-YRSS 77
            IE+G VPFP YR+S
Sbjct: 64 NSIENGHVPFPNYRTS 79

[Close]

BLAST of CsaV3_7G000010 vs. TAIR10
Match: AT2G21650.1 (Homeodomain-like superfamily protein)

HSP 1 Score: 111.3 bits (277), Expect = 2.8e-25
Identity = 50/78 (64.10%), Postives = 64/78 (82.05%), Query Frame = 0


Query: 3  SLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVK 62
          S+S++GSG WT KQNKAFE ALA+YD+DTPDRW NVA+A+GGKT EE KR Y LL+ D++
Sbjct: 5  SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIE 64

Query: 63 HIESGKVPFP-YRSSRSN 80
           IE+G VPFP Y+++  N
Sbjct: 65 SIENGHVPFPDYKTTTGN 82

[Close]

BLAST of CsaV3_7G000010 vs. TAIR10
Match: AT1G75250.1 (RAD-like 6)

HSP 1 Score: 105.5 bits (262), Expect = 1.5e-23
Identity = 51/80 (63.75%), Postives = 61/80 (76.25%), Query Frame = 0


Query: 1  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60
          MAS S      WT  QNK FE ALA+YDKDTPDRW NVAKA+GGKT EEVKRHY +L+ED
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 VKHIESGKVPFP-YRSSRSN 80
          + +IE+G+VP P Y++  SN
Sbjct: 61 LINIETGRVPLPNYKTFESN 80

[Close]

BLAST of CsaV3_7G000010 vs. TAIR10
Match: AT1G19510.1 (RAD-like 5)

HSP 1 Score: 101.7 bits (252), Expect = 2.2e-22
Identity = 47/72 (65.28%), Postives = 55/72 (76.39%), Query Frame = 0


Query: 1  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60
          MAS S   S  WT+KQNK FE ALA+YDKDTPDRW NVAKA+G K+ EEVKRHY +L+ED
Sbjct: 1  MASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVED 60

Query: 61 VKHIESGKVPFP 73
          + +IE   VP P
Sbjct: 61 LMNIEQDLVPLP 72

[Close]

BLAST of CsaV3_7G000010 vs. TAIR10
Match: AT2G18328.1 (RAD-like 4)

HSP 1 Score: 94.4 bits (233), Expect = 3.5e-20
Identity = 46/77 (59.74%), Postives = 60/77 (77.92%), Query Frame = 0


Query: 1  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60
          MAS S+  +  WTA+++K FE ALA +DKDTPDRW  +A+A+GGK+ EEVKRHY+LLL D
Sbjct: 1  MAS-SSMSTSSWTAREDKQFEMALAKFDKDTPDRWQKIARAVGGKSTEEVKRHYELLLRD 60

Query: 61 VKHIESGKVPFP-YRSS 77
          V  IESG+ P P YR++
Sbjct: 61 VNDIESGRYPQPRYRNT 76

[Close]

BLAST of CsaV3_7G000010 vs. Swiss-Prot
Match: sp|F4JVB8|RADL1_ARATH (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 7.7e-25
Identity = 52/76 (68.42%), Postives = 65/76 (85.53%), Query Frame = 0


Query: 2  ASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDV 61
          +S+S+  SG WTAKQNKAFE+ALA YD+DTP+RW NVAK +GGKT EEVKRHY+LL++D+
Sbjct: 4  SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDI 63

Query: 62 KHIESGKVPFP-YRSS 77
            IE+G VPFP YR+S
Sbjct: 64 NSIENGHVPFPNYRTS 79

[Close]

BLAST of CsaV3_7G000010 vs. Swiss-Prot
Match: sp|Q58FS3|RAD_ANTMA (Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 2.2e-24
Identity = 52/77 (67.53%), Postives = 66/77 (85.71%), Query Frame = 0


Query: 5  SAHGSG-VWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKH 64
          S  GSG  W+AK+NKAFE ALA+YDKDTPDRW NVA+A+ G+T EEVK+HY++L+ED+K+
Sbjct: 3  STRGSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKY 62

Query: 65 IESGKVPFP-YRSSRSN 80
          IESGKVPFP YR++  N
Sbjct: 63 IESGKVPFPNYRTTGGN 79

[Close]

BLAST of CsaV3_7G000010 vs. Swiss-Prot
Match: sp|Q9SIJ5|RADL2_ARATH (Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 5.0e-24
Identity = 50/78 (64.10%), Postives = 64/78 (82.05%), Query Frame = 0


Query: 3  SLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVK 62
          S+S++GSG WT KQNKAFE ALA+YD+DTPDRW NVA+A+GGKT EE KR Y LL+ D++
Sbjct: 5  SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIE 64

Query: 63 HIESGKVPFP-YRSSRSN 80
           IE+G VPFP Y+++  N
Sbjct: 65 SIENGHVPFPDYKTTTGN 82

[Close]

BLAST of CsaV3_7G000010 vs. Swiss-Prot
Match: sp|Q1A173|RADL6_ARATH (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 2.7e-22
Identity = 51/80 (63.75%), Postives = 61/80 (76.25%), Query Frame = 0


Query: 1  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60
          MAS S      WT  QNK FE ALA+YDKDTPDRW NVAKA+GGKT EEVKRHY +L+ED
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 VKHIESGKVPFP-YRSSRSN 80
          + +IE+G+VP P Y++  SN
Sbjct: 61 LINIETGRVPLPNYKTFESN 80

[Close]

BLAST of CsaV3_7G000010 vs. Swiss-Prot
Match: sp|Q6NNN0|RADL3_ARATH (Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 3.6e-22
Identity = 50/80 (62.50%), Postives = 61/80 (76.25%), Query Frame = 0


Query: 1  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60
          MAS S   S  WT K+NK FE ALA YD+DTPDRW NVA+A+GGK+ EEV+RHY+LL+ D
Sbjct: 1  MASNSMSSSASWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELLIRD 60

Query: 61 VKHIESGKVPFP-YRSSRSN 80
          V  IESG+ P P YRS+ +N
Sbjct: 61 VNDIESGRYPHPNYRSNGNN 80

[Close]

BLAST of CsaV3_7G000010 vs. TrEMBL
Match: tr|A0A0A0K344|A0A0A0K344_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G169070 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 7.7e-38
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60
          MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED
Sbjct: 1  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VKHIESGKVPFPYRSSRSN 80
          VKHIESGKVPFPYRSSRSN
Sbjct: 61 VKHIESGKVPFPYRSSRSN 79

[Close]

BLAST of CsaV3_7G000010 vs. TrEMBL
Match: tr|A0A1S3BGF6|A0A1S3BGF6_CUCME (protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489576 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 2.5e-36
Identity = 75/79 (94.94%), Postives = 78/79 (98.73%), Query Frame = 0


Query: 1  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60
          MAS+SAHGSGVWTAKQNKAFE+ALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED
Sbjct: 1  MASMSAHGSGVWTAKQNKAFEKALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VKHIESGKVPFPYRSSRSN 80
          VKHIESGKVPFPYR+SR N
Sbjct: 61 VKHIESGKVPFPYRTSRGN 79

[Close]

BLAST of CsaV3_7G000010 vs. TrEMBL
Match: tr|A0A0A0K3K0|A0A0A0K3K0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G168060 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 2.6e-30
Identity = 64/76 (84.21%), Postives = 71/76 (93.42%), Query Frame = 0


Query: 1  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60
          MAS+SAHGS  WTA +NKAFE+ALA+YDKDTP+RWLNVAKAIGGKTEEEVKRHYQLLLED
Sbjct: 1  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VKHIESGKVPFPYRSS 77
          V HIESG++PFPYR S
Sbjct: 61 VNHIESGQIPFPYRKS 76

[Close]

BLAST of CsaV3_7G000010 vs. TrEMBL
Match: tr|A0A1S3BFW6|A0A1S3BFW6_CUCME (protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489573 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.2e-29
Identity = 62/76 (81.58%), Postives = 71/76 (93.42%), Query Frame = 0


Query: 1  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60
          MAS+S+HGSG WT KQNKAFE+ALA+YD+DTPDRWLNVAKA+GGKT EEVKRHY LL+ED
Sbjct: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKHIESGKVPFPYRSS 77
          VK IESG+VPFPYR+S
Sbjct: 61 VKFIESGQVPFPYRTS 76

[Close]

BLAST of CsaV3_7G000010 vs. TrEMBL
Match: tr|A0A1S3BGF0|A0A1S3BGF0_CUCME (protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489577 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 2.9e-29
Identity = 62/76 (81.58%), Postives = 72/76 (94.74%), Query Frame = 0


Query: 1  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60
          MAS+SAHGS  WTA +NKAFE+ALA+YDKDTP+RWLNVAKAIGGKTEE+VKRHYQLLLED
Sbjct: 1  MASMSAHGSTQWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLED 60

Query: 61 VKHIESGKVPFPYRSS 77
          V HIE+G++PFPYR+S
Sbjct: 61 VNHIENGQIPFPYRNS 76

The following BLAST results are available for this feature:

BLAST of CsaV3_7G000010 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004151116.1	1.2e-37	100.00	PREDICTED: protein RADIALIS-like 1 [Cucumis sativus] >KGN44075.1 hypothetical pr...	[more]
XP_008447025.1	3.7e-36	94.94	PREDICTED: protein RADIALIS-like 1 [Cucumis melo]	[more]
XP_022952073.1	1.6e-34	91.14	protein RADIALIS-like 1 [Cucurbita moschata] >XP_022972518.1 protein RADIALIS-li...	[more]
XP_011658943.1	4.0e-30	84.21	PREDICTED: protein RADIALIS-like 1 [Cucumis sativus] >KGN44073.1 hypothetical pr...	[more]
XP_022933530.1	6.8e-30	82.89	protein RADIALIS-like 1 [Cucurbita moschata]	[more]

BLAST of CsaV3_7G000010 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G39250.1	4.3e-26	68.42	RAD-like 1	[more]
AT2G21650.1	2.8e-25	64.10	Homeodomain-like superfamily protein	[more]
AT1G75250.1	1.5e-23	63.75	RAD-like 6	[more]
AT1G19510.1	2.2e-22	65.28	RAD-like 5	[more]
AT2G18328.1	3.5e-20	59.74	RAD-like 4	[more]

BLAST of CsaV3_7G000010 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|F4JVB8\|RADL1_ARATH	7.7e-25	68.42	Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1	[more]
sp\|Q58FS3\|RAD_ANTMA	2.2e-24	67.53	Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1	[more]
sp\|Q9SIJ5\|RADL2_ARATH	5.0e-24	64.10	Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1	[more]
sp\|Q1A173\|RADL6_ARATH	2.7e-22	63.75	Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1	[more]
sp\|Q6NNN0\|RADL3_ARATH	3.6e-22	62.50	Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1	[more]

BLAST of CsaV3_7G000010 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K344\|A0A0A0K344_CUCSA	7.7e-38	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G169070 PE=4 SV=1	[more]
tr\|A0A1S3BGF6\|A0A1S3BGF6_CUCME	2.5e-36	94.94	protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489576 PE=4 SV=1	[more]
tr\|A0A0A0K3K0\|A0A0A0K3K0_CUCSA	2.6e-30	84.21	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G168060 PE=4 SV=1	[more]
tr\|A0A1S3BFW6\|A0A1S3BFW6_CUCME	2.2e-29	81.58	protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489573 PE=4 SV=1	[more]
tr\|A0A1S3BGF0\|A0A1S3BGF0_CUCME	2.9e-29	81.58	protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489577 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR009057	Homeobox-like_sf
IPR017884	SANT_dom
IPR001005	SANT/Myb

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G000010.1	CsaV3_7G000010.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 8..60 e-value: 1.6E-8 score: 44.3
IPR001005	SANT/Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 10..57 e-value: 5.5E-8 score: 32.8
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 12..58 e-value: 7.75774E-7 score: 40.6366
None	No IPR available	GENE3D	G3DSA:1.10.10.60		coord: 4..71 e-value: 1.6E-22 score: 81.1
None	No IPR available	PANTHER	PTHR43952:SF14	PROTEIN RADIALIS-LIKE 1-RELATED	coord: 1..77
None	No IPR available	PANTHER	PTHR43952	FAMILY NOT NAMED	coord: 1..77
IPR017884	SANT domain	PROSITE	PS51293	SANT	coord: 7..62 score: 10.615
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	SSF46689	Homeodomain-like	coord: 10..66

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_7G000010	CSPI02G12200	Wild cucumber (PI 183967)	cpicucB118
CsaV3_7G000010	Cucsa.377630	Cucumber (Gy14) v1	cgycucB572
CsaV3_7G000010	Cucsa.109620	Cucumber (Gy14) v1	cgycucB141
CsaV3_7G000010	CmaCh11G010940	Cucurbita maxima (Rimu)	cmacucB0177
CsaV3_7G000010	CmaCh20G008500	Cucurbita maxima (Rimu)	cmacucB0689
CsaV3_7G000010	CmaCh19G006700	Cucurbita maxima (Rimu)	cmacucB0638
CsaV3_7G000010	CmaCh02G003970	Cucurbita maxima (Rimu)	cmacucB0769
CsaV3_7G000010	CmaCh05G002390	Cucurbita maxima (Rimu)	cmacucB0958
CsaV3_7G000010	CmoCh11G011180	Cucurbita moschata (Rifu)	cmocucB0161
CsaV3_7G000010	CmoCh02G004030	Cucurbita moschata (Rifu)	cmocucB0757
CsaV3_7G000010	CmoCh20G008590	Cucurbita moschata (Rifu)	cmocucB0674
CsaV3_7G000010	CmoCh19G006820	Cucurbita moschata (Rifu)	cmocucB0622
CsaV3_7G000010	Cp4.1LG04g00950	Cucurbita pepo (Zucchini)	cpecucB0869
CsaV3_7G000010	Cp4.1LG16g02320	Cucurbita pepo (Zucchini)	cpecucB0371
CsaV3_7G000010	Cp4.1LG07g04080	Cucurbita pepo (Zucchini)	cpecucB1042
CsaV3_7G000010	Cp4.1LG11g01910	Cucurbita pepo (Zucchini)	cpecucB0139
CsaV3_7G000010	Cp4.1LG15g05490	Cucurbita pepo (Zucchini)	cpecucB0322
CsaV3_7G000010	CsGy7G000010	Cucumber (Gy14) v2	cgybcucB348
CsaV3_7G000010	CsGy2G012190	Cucumber (Gy14) v2	cgybcucB093
CsaV3_7G000010	Carg24682	Silver-seed gourd	carcucB0201
CsaV3_7G000010	Carg19405	Silver-seed gourd	carcucB0347
CsaV3_7G000010	Cla016559	Watermelon (97103) v1	cucwmB640
CsaV3_7G000010	Cla015915	Watermelon (97103) v1	cucwmB634
CsaV3_7G000010	MELO3C023292	Melon (DHL92) v3.5.1	cucmeB530
CsaV3_7G000010	MELO3C012498	Melon (DHL92) v3.5.1	cucmeB549
CsaV3_7G000010	ClCG11G004400	Watermelon (Charleston Gray)	cucwcgB558
CsaV3_7G000010	ClCG02G004920	Watermelon (Charleston Gray)	cucwcgB571
CsaV3_7G000010	Lsi10G003670	Bottle gourd (USVL1VR-Ls)	cuclsiB524
CsaV3_7G000010	Lsi11G011060	Bottle gourd (USVL1VR-Ls)	cuclsiB529
CsaV3_7G000010	MELO3C012498.2	Melon (DHL92) v3.6.1	cucmedB537
CsaV3_7G000010	MELO3C023292.2	Melon (DHL92) v3.6.1	cucmedB518
CsaV3_7G000010	Cla97C11G211150	Watermelon (97103) v2	cucwmbB539
CsaV3_7G000010	Cla97C02G031880	Watermelon (97103) v2	cucwmbB549
CsaV3_7G000010	Bhi05G001102	Wax gourd	cucwgoB692
CsaV3_7G000010	Bhi10G001619	Wax gourd	cucwgoB706

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CsaV3_7G000010	CsaV3_2G014710	Cucumber (Chinese Long) v3	cuccucB098

The following block(s) are covering this gene:

None