MELO3C023292 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C023292
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Myb family transcription factor family protein
Location	chr11 : 995024 .. 997425 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ACCCCTTTAAATTAATTTTAATTACCAGTTTTTGCCCCTCAACAATGGCTTCCATTTCCTCTTCCTCTCACGACTCTGCCTCCTCTTCTTGGACTCCTAACCAAAACAAAGCCTTCGAAAGGGCTTTGGCTGTCTTTGACAAAGACACCCCTGATCGCTGGCTCAATGTCGCCAACGCCGTCGGCGGTGGCAAGACCCCTGACGAAGTCAAGCGGCATTTCGACCGTCTCGTCGAAGATGTCAAACACATTGAATCTGGCCGCGTTCCTTTCCCTAAATACACCTCCTCCTCCTCCTCCTCCTCCGCCCCTAGAACCTCCAGTAATGCTAACATCAAAGACCAAGAACAAAGGTACCTCTCGGCCTTCATTTTTTCTTTTTCTAAGTTTTAACCTTTCGAAATATTACATATTTCTCAACTACTAAACTACATTTTTAAAGCTTTTTTACGACAAAAAAAGTCCAACCTCTAAGTCGCTTTCAACTCACTTTTATTTTGGTTCGCTTTCGAGATTCTCTCTTCATATGTATCTCTGCATAGTTTTTAATCTTTTTGATCTTCTCATCTCCACAATGTTTCTTTTTTTTTTTCTTTTCTTCTTGAAATTCCTTAGAGCTTCCTTTTAATGCCTTACAAAAAGCTATACATCTTTTTTATCACCTCCATGTCCTTCCCCTCTCTCATGTGACTTTCCTATGTATTTTCAAGTTTTTCTTTTTTATTTCTTAACCAAACTATAATATAAACAAACCCAATTAAAAAGAATCAAATTGATTAGAGTTTTTATTTCAAAATTAAAAAACAATACAAGTTGCATCGAGTTTTCCTACCTATCTCCTTCAATCACGTAGCAAAAAAAAAGAAACACGAAAAATTGTTATCTCGTAACAATGGATTGAGCTACACAAAGATAAGTAGGTCGGACCTTTACTCTATTTATAATATTTTAATTAAAGAAAAGGGTATTTGAAAGTTGGTTTTTTTTCGAGGATAATGGGTTCCAGAAAAAGAGAAAAGCATGCAATCCAATCATACCTCAATTGGTAAATGCAATGTTTTCTTTTTATATAAAAATAAAAGGTAAAAAAAAAGTCAACAGTTTACGAGAAACCCAGCCTCGTGCCGGTCACGTGCCTTGCTCCTACAAATAGGGCTGATTAATTAATTAATACCAATAATTGCATTCTTAATATTATAATTAACCCTCATAATTTATGTATTAATTATTGGCGTTATCTAATCTTATAACTTAATTATTTTTTAATGTTGATATTTTGTTTTCCTGACAAATATCCAACTTGTCGGATTGTATTCTAACAATCCCCATTACTCCACAAAAACAATACACATCTTCTTTTTTCTTTTTTCTTTTTTTCTTTTTTCTTTCCATTTTTGGGAGCTTTTTATTCTTTAATCAAAACAAAAAAAAATAATTCACCCAAACTTTCAAATTAAGAAATATTTTAACTCCCAAAAAAATTTTTAGAAGTTAAAAAAAAATGAAAAATGAATAAAATTTATATATAAAAAGAAAAAAGGTATAGCCAAGAACTTATAATGAAAATCCATATGAGTAACTGAGGAGTCTAATCTATAGCAAATTAAAAGAAAAGAAATATGATCTTAATTTAAATAATTGAGATCTTATTTGATACGATTTTATTTCTAATTTTTTTAGTTTTCGTTCACTGTTTATTGTTTTCATTTCATAAACTAAAAGAAAAAGAAAAGAAAAAGTCATTGTCTTGATTTAAATCACTAAGGTCCTTTTTTTTTATGACGTACATCCCTTTGATTATATTTATGTATAAATAAGAATAATGATCTTTTTGTCGTGTTTGCTTGTCCTTCTTGTACTATTAGCCCTCCAAGTAATTTTTAAAAGATATAAAAAATATCTACTTTGGTCTTTGAATTTGAAAAATATATCTATTTTAGTTATTACAATTATTTTATTGTCAAATGTTACTCATTCTTTATCTATTTAGCGTATGGAAATATCACTGCATATTTGAAGTCATGTCATCATTTGTCAAATAATTGAGATTGAAGCAATGTTAGAGATCAAAATAGTTATGGTTGAATATGAAAATTAAATTAAGGTTTTGAAAATTGCAATCATGGGCCTAACTCATTTCATTTTTGCAGGATGAGAAACATGAAACTCCATTAAATTGGTTAAAATTGAAGGCAAATGGATGGGATTAAGAAGAATGAAAAAGTGGATAGGTGGTTGCTGTTTTTGCGCCTAAGATAACAAAAAAGGAATTAATGTAGCCAAATTTGCAATTTATGTGAATTTTTTTTATCTTCCTCTTGAAAGTGTATTTGCCCAACTAAAAAGCTAATCAATGTAGAAGAATCAATTTGATTTATGTTTCTTCCATCCACTAATTTCCCC

mRNA sequence

ACCCCTTTAAATTAATTTTAATTACCAGTTTTTGCCCCTCAACAATGGCTTCCATTTCCTCTTCCTCTCACGACTCTGCCTCCTCTTCTTGGACTCCTAACCAAAACAAAGCCTTCGAAAGGGCTTTGGCTGTCTTTGACAAAGACACCCCTGATCGCTGGCTCAATGTCGCCAACGCCGTCGGCGGTGGCAAGACCCCTGACGAAGTCAAGCGGCATTTCGACCGTCTCGTCGAAGATGTCAAACACATTGAATCTGGCCGCGTTCCTTTCCCTAAATACACCTCCTCCTCCTCCTCCTCCTCCGCCCCTAGAACCTCCAGTAATGCTAACATCAAAGACCAAGAACAAAGGATGAGAAACATGAAACTCCATTAAATTGGTTAAAATTGAAGGCAAATGGATGGGATTAAGAAGAATGAAAAAGTGGATAGGTGGTTGCTGTTTTTGCGCCTAAGATAACAAAAAAGGAATTAATGTAGCCAAATTTGCAATTTATGTGAATTTTTTTTATCTTCCTCTTGAAAGTGTATTTGCCCAACTAAAAAGCTAATCAATGTAGAAGAATCAATTTGATTTATGTTTCTTCCATCCACTAATTTCCCC

Coding sequence (CDS)

ATGGCTTCCATTTCCTCTTCCTCTCACGACTCTGCCTCCTCTTCTTGGACTCCTAACCAAAACAAAGCCTTCGAAAGGGCTTTGGCTGTCTTTGACAAAGACACCCCTGATCGCTGGCTCAATGTCGCCAACGCCGTCGGCGGTGGCAAGACCCCTGACGAAGTCAAGCGGCATTTCGACCGTCTCGTCGAAGATGTCAAACACATTGAATCTGGCCGCGTTCCTTTCCCTAAATACACCTCCTCCTCCTCCTCCTCCTCCGCCCCTAGAACCTCCAGTAATGCTAACATCAAAGACCAAGAACAAAGGATGAGAAACATGAAACTCCATTAA

Protein sequence

MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSAPRTSSNANIKDQEQRMRNMKLH*

Homology

[Close]

BLAST of MELO3C023292 vs. Swiss-Prot
Match: RADL2_ARATH (Protein RADIALIS-like 2 OS=Arabidopsis thaliana GN=RL2 PE=2 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 3.3e-26
Identity = 63/109 (57.80%), Postives = 79/109 (72.48%), Query Frame = 1


Query: 1   MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFD 60
           MAS S SS+   S SWT  QNKAFERALAV+D+DTPDRW NVA AV GGKTP+E KR +D
Sbjct: 1   MASGSMSSY--GSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAV-GGKTPEEAKRQYD 60

Query: 61  RLVEDVKHIESGRVPFPKYTSSSSSSSAPRTSSNANIKDQEQRMRNMKL 110
            LV D++ IE+G VPFP Y +++ +S+  R      ++D+E+RMR+MKL
Sbjct: 61  LLVRDIESIENGHVPFPDYKTTTGNSNRGR------LRDEEKRMRSMKL 100

[Close]

BLAST of MELO3C023292 vs. Swiss-Prot
Match: RADL1_ARATH (Protein RADIALIS-like 1 OS=Arabidopsis thaliana GN=RL1 PE=2 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 4.0e-24
Identity = 55/105 (52.38%), Postives = 70/105 (66.67%), Query Frame = 1


Query: 5   SSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVE 64
           SSS    +S SWT  QNKAFE+ALA +D+DTP+RW NVA  V GGKT +EVKRH++ LV+
Sbjct: 3   SSSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVV-GGKTTEEVKRHYELLVQ 62

Query: 65  DVKHIESGRVPFPKYTSSSSSSSAPRTSSNANIKDQEQRMRNMKL 110
           D+  IE+G VPFP Y +S          +N  +  +E+RMRNM+L
Sbjct: 63  DINSIENGHVPFPNYRTSGG-------CTNGRLSQEEKRMRNMRL 99

[Close]

BLAST of MELO3C023292 vs. Swiss-Prot
Match: RAD_ANTMA (Transcription factor RADIALIS OS=Antirrhinum majus GN=RAD PE=1 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 3.4e-23
Identity = 52/94 (55.32%), Postives = 67/94 (71.28%), Query Frame = 1


Query: 16  WTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVP 75
           W+  +NKAFERALAV+DKDTPDRW NVA AV  G+TP+EVK+H++ LVED+K+IESG+VP
Sbjct: 11  WSAKENKAFERALAVYDKDTPDRWANVARAV-EGRTPEEVKKHYEILVEDIKYIESGKVP 70

Query: 76  FPKYTSSSSSSSAPRTSSNANIKDQEQRMRNMKL 110
           FP Y            ++  N+K  E+R RN+K+
Sbjct: 71  FPNY-----------RTTGGNMKTDEKRFRNLKI 92

[Close]

BLAST of MELO3C023292 vs. Swiss-Prot
Match: RADL6_ARATH (Protein RADIALIS-like 6 OS=Arabidopsis thaliana GN=RL6 PE=2 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 6.4e-22
Identity = 58/105 (55.24%), Postives = 73/105 (69.52%), Query Frame = 1


Query: 6   SSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVED 65
           +S+  S+ S WT +QNK FERALAV+DKDTPDRW NVA AV GGKT +EVKRH+D LVED
Sbjct: 2   ASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAV-GGKTVEEVKRHYDILVED 61

Query: 66  VKHIESGRVPFPKYTSSSSSSSAPRTSSNANIKDQEQR-MRNMKL 110
           + +IE+GRVP P Y +  S+S         +I D + R M+N+K+
Sbjct: 62  LINIETGRVPLPNYKTFESNS--------RSINDFDTRKMKNLKI 97

[Close]

BLAST of MELO3C023292 vs. Swiss-Prot
Match: RADL5_ARATH (Protein RADIALIS-like 5 OS=Arabidopsis thaliana GN=RL5 PE=3 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 5.4e-21
Identity = 57/105 (54.29%), Postives = 69/105 (65.71%), Query Frame = 1


Query: 6   SSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVED 65
           +SS  S+SSSWT  QNK FERALAV+DKDTPDRW NVA AV G K+ +EVKRH+D LVED
Sbjct: 2   ASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAV-GSKSAEEVKRHYDILVED 61

Query: 66  VKHIESGRVPFPKYTSSSSSSSAPRTSSNANIKDQEQR-MRNMKL 110
           + +IE   VP PKY +          S +  I D + R M+NM++
Sbjct: 62  LMNIEQDLVPLPKYKTVDVG------SKSRGIDDFDLRLMKNMRI 99

[Close]

BLAST of MELO3C023292 vs. TrEMBL
Match: A0A0A0LL58_CUCSA (MYB transcription factor MYB142 OS=Cucumis sativus GN=Csa_2G247060 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 3.7e-45
Identity = 98/110 (89.09%), Postives = 99/110 (90.00%), Query Frame = 1


Query: 1   MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFD 60
           MASISSS     SSSWTPNQNKAFERALAVFDKDTPDRWLNVA AVGGGKTPDEVKRHFD
Sbjct: 1   MASISSS-----SSSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFD 60

Query: 61  RLVEDVKHIESGRVPFPKYTSSSSSSSAPRTSSNANIKDQEQRMRNMKLH 111
           RLVEDVKHIESGRVPFPKYTSSSSS     T+SNANIKDQEQRMRNMKLH
Sbjct: 61  RLVEDVKHIESGRVPFPKYTSSSSSP----TTSNANIKDQEQRMRNMKLH 101

[Close]

BLAST of MELO3C023292 vs. TrEMBL
Match: A0A0E3XW49_9LAMI (Radialis OS=Rhytidophyllum auriculatum PE=2 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 2.7e-27
Identity = 63/105 (60.00%), Postives = 81/105 (77.14%), Query Frame = 1


Query: 5   SSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVE 64
           SSS   ++ S+WT  +NKAFE+ALAVFDKDTPDRW NVA  + GG+TPDEVK+H++ LVE
Sbjct: 3   SSSMTRNSGSTWTAKENKAFEKALAVFDKDTPDRWANVAKTI-GGRTPDEVKKHYEILVE 62

Query: 65  DVKHIESGRVPFPKYTSSSSSSSAPRTSSNANIKDQEQRMRNMKL 110
           D+K+IESGRVPFP Y ++        T+  ANI+D+EQRMRN+ L
Sbjct: 63  DIKYIESGRVPFPNYRTTG-------TNHVANIRDEEQRMRNLNL 99

[Close]

BLAST of MELO3C023292 vs. TrEMBL
Match: A0A0E3XVT9_9LAMI (Radialis OS=Rhytidophyllum rupincola PE=2 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 2.3e-26
Identity = 61/105 (58.10%), Postives = 80/105 (76.19%), Query Frame = 1


Query: 5   SSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVE 64
           SSS   ++  +WT  +NKAFE+ALAVFD+DTPDRW NVA  + GG+TPDEVK+H++ LVE
Sbjct: 3   SSSMTRNSGGTWTAKENKAFEKALAVFDEDTPDRWANVAKTI-GGRTPDEVKKHYEILVE 62

Query: 65  DVKHIESGRVPFPKYTSSSSSSSAPRTSSNANIKDQEQRMRNMKL 110
           D+K+IESGRVPFP Y ++        T+  ANI+D+EQRMRN+ L
Sbjct: 63  DIKYIESGRVPFPNYRTAG-------TNHVANIRDEEQRMRNLNL 99

[Close]

BLAST of MELO3C023292 vs. TrEMBL
Match: V7BUX6_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G018500g PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 2.3e-26
Identity = 61/104 (58.65%), Postives = 76/104 (73.08%), Query Frame = 1


Query: 6   SSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVED 65
           +SS  S++ SW+   NKAFERALAV+DKDTPDRW NVA AVGGGKTP+EVKRH++ L+ D
Sbjct: 2   ASSSMSSTGSWSAKDNKAFERALAVYDKDTPDRWYNVAKAVGGGKTPEEVKRHYELLLRD 61

Query: 66  VKHIESGRVPFPKYTSSSSSSSAPRTSSNANIKDQEQRMRNMKL 110
           V+HIESG+VPFP Y  S  S             ++E+R+RNMKL
Sbjct: 62  VRHIESGQVPFPNYKQSGGS-------------EEEKRLRNMKL 92

[Close]

BLAST of MELO3C023292 vs. TrEMBL
Match: A2Q4K0_MEDTR (Homeodomain-related OS=Medicago truncatula GN=MtrDRAFT_AC157502g5v2 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 3.9e-26
Identity = 63/105 (60.00%), Postives = 77/105 (73.33%), Query Frame = 1


Query: 6   SSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVED 65
           +SS  SAS SW+  +NKAFERALAV+DKDTPDRW NVA+AV GGKTP+EVK+H++ LVED
Sbjct: 2   ASSSMSASGSWSVKENKAFERALAVYDKDTPDRWYNVAHAV-GGKTPEEVKKHYELLVED 61

Query: 66  VKHIESGRVPFPKYTSSSSSSSAPRTSSNANIKDQEQRMRNMKLH 111
           +KHIESG+VPFP Y   S             +  +E+RMRNM LH
Sbjct: 62  IKHIESGKVPFPNYKKIS-------------VSHEEKRMRNMSLH 92

[Close]

BLAST of MELO3C023292 vs. TAIR10
Match: AT2G21650.1 (AT2G21650.1 Homeodomain-like superfamily protein)

HSP 1 Score: 119.0 bits (297), Expect = 1.8e-27
Identity = 63/109 (57.80%), Postives = 79/109 (72.48%), Query Frame = 1


Query: 1   MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFD 60
           MAS S SS+   S SWT  QNKAFERALAV+D+DTPDRW NVA AV GGKTP+E KR +D
Sbjct: 1   MASGSMSSY--GSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAV-GGKTPEEAKRQYD 60

Query: 61  RLVEDVKHIESGRVPFPKYTSSSSSSSAPRTSSNANIKDQEQRMRNMKL 110
            LV D++ IE+G VPFP Y +++ +S+  R      ++D+E+RMR+MKL
Sbjct: 61  LLVRDIESIENGHVPFPDYKTTTGNSNRGR------LRDEEKRMRSMKL 100

[Close]

BLAST of MELO3C023292 vs. TAIR10
Match: AT4G39250.1 (AT4G39250.1 RAD-like 1)

HSP 1 Score: 112.1 bits (279), Expect = 2.2e-25
Identity = 55/105 (52.38%), Postives = 70/105 (66.67%), Query Frame = 1


Query: 5   SSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVE 64
           SSS    +S SWT  QNKAFE+ALA +D+DTP+RW NVA  V GGKT +EVKRH++ LV+
Sbjct: 3   SSSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVV-GGKTTEEVKRHYELLVQ 62

Query: 65  DVKHIESGRVPFPKYTSSSSSSSAPRTSSNANIKDQEQRMRNMKL 110
           D+  IE+G VPFP Y +S          +N  +  +E+RMRNM+L
Sbjct: 63  DINSIENGHVPFPNYRTSGG-------CTNGRLSQEEKRMRNMRL 99

[Close]

BLAST of MELO3C023292 vs. TAIR10
Match: AT1G75250.1 (AT1G75250.1 RAD-like 6)

HSP 1 Score: 103.2 bits (256), Expect = 1.0e-22
Identity = 52/81 (64.20%), Postives = 62/81 (76.54%), Query Frame = 1


Query: 6  SSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVED 65
          +S+  S+ S WT +QNK FERALAV+DKDTPDRW NVA AV GGKT +EVKRH+D LVED
Sbjct: 2  ASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAV-GGKTVEEVKRHYDILVED 61

Query: 66 VKHIESGRVPFPKYTSSSSSS 87
          + +IE+GRVP P Y +  S+S
Sbjct: 62 LINIETGRVPLPNYKTFESNS 81

[Close]

BLAST of MELO3C023292 vs. TAIR10
Match: AT1G19510.1 (AT1G19510.1 RAD-like 5)

HSP 1 Score: 101.7 bits (252), Expect = 3.0e-22
Identity = 57/105 (54.29%), Postives = 69/105 (65.71%), Query Frame = 1


Query: 6   SSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVED 65
           +SS  S+SSSWT  QNK FERALAV+DKDTPDRW NVA AV G K+ +EVKRH+D LVED
Sbjct: 2   ASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAV-GSKSAEEVKRHYDILVED 61

Query: 66  VKHIESGRVPFPKYTSSSSSSSAPRTSSNANIKDQEQR-MRNMKL 110
           + +IE   VP PKY +          S +  I D + R M+NM++
Sbjct: 62  LMNIEQDLVPLPKYKTVDVG------SKSRGIDDFDLRLMKNMRI 99

[Close]

BLAST of MELO3C023292 vs. TAIR10
Match: AT2G18328.1 (AT2G18328.1 RAD-like 4)

HSP 1 Score: 89.7 bits (221), Expect = 1.2e-18
Identity = 42/77 (54.55%), Postives = 55/77 (71.43%), Query Frame = 1


Query: 7  SSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDV 66
          +S   ++SSWT  ++K FE ALA FDKDTPDRW  +A AV GGK+ +EVKRH++ L+ DV
Sbjct: 2  ASSSMSTSSWTAREDKQFEMALAKFDKDTPDRWQKIARAV-GGKSTEEVKRHYELLLRDV 61

Query: 67 KHIESGRVPFPKYTSSS 84
            IESGR P P+Y +++
Sbjct: 62 NDIESGRYPQPRYRNTN 77

[Close]

BLAST of MELO3C023292 vs. NCBI nr
Match: gi|659122038|ref|XP_008460938.1| (PREDICTED: protein RADIALIS-like 2 [Cucumis melo])

HSP 1 Score: 223.8 bits (569), Expect = 1.5e-55
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1


Query: 1   MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFD 60
           MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFD
Sbjct: 1   MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFD 60

Query: 61  RLVEDVKHIESGRVPFPKYTSSSSSSSAPRTSSNANIKDQEQRMRNMKLH 111
           RLVEDVKHIESGRVPFPKYTSSSSSSSAPRTSSNANIKDQEQRMRNMKLH
Sbjct: 61  RLVEDVKHIESGRVPFPKYTSSSSSSSAPRTSSNANIKDQEQRMRNMKLH 110

[Close]

BLAST of MELO3C023292 vs. NCBI nr
Match: gi|449462230|ref|XP_004148844.1| (PREDICTED: transcription factor RADIALIS-like [Cucumis sativus])

HSP 1 Score: 188.7 bits (478), Expect = 5.4e-45
Identity = 98/110 (89.09%), Postives = 99/110 (90.00%), Query Frame = 1


Query: 1   MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFD 60
           MASISSS     SSSWTPNQNKAFERALAVFDKDTPDRWLNVA AVGGGKTPDEVKRHFD
Sbjct: 1   MASISSS-----SSSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFD 60

Query: 61  RLVEDVKHIESGRVPFPKYTSSSSSSSAPRTSSNANIKDQEQRMRNMKLH 111
           RLVEDVKHIESGRVPFPKYTSSSSS     T+SNANIKDQEQRMRNMKLH
Sbjct: 61  RLVEDVKHIESGRVPFPKYTSSSSSP----TTSNANIKDQEQRMRNMKLH 101

[Close]

BLAST of MELO3C023292 vs. NCBI nr
Match: gi|470106642|ref|XP_004289671.1| (PREDICTED: transcription factor RADIALIS-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 132.9 bits (333), Expect = 3.5e-28
Identity = 70/110 (63.64%), Postives = 82/110 (74.55%), Query Frame = 1


Query: 1   MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFD 60
           MAS S SS +S SS WT  QNKAFE+ALA++DKDTPDRW NVA AV G KTP+EVKRH+D
Sbjct: 1   MASSSMSSRNSGSS-WTAKQNKAFEKALALYDKDTPDRWYNVARAV-GNKTPEEVKRHYD 60

Query: 61  RLVEDVKHIESGRVPFPKYTSSSSSSSAPRTSSNANIKDQEQRMRNMKLH 111
            LVEDVKHIESG+VPFP Y +S  S +           D+E+RMRN+KLH
Sbjct: 61  LLVEDVKHIESGQVPFPDYRTSGGSGNIGH--------DEEKRMRNLKLH 100

[Close]

BLAST of MELO3C023292 vs. NCBI nr
Match: gi|1000983389|ref|XP_015582362.1| (PREDICTED: transcription factor RADIALIS isoform X1 [Ricinus communis])

HSP 1 Score: 131.7 bits (330), Expect = 7.8e-28
Identity = 67/106 (63.21%), Postives = 78/106 (73.58%), Query Frame = 1


Query: 5   SSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVE 64
           SSS     S SWT  QNKAFERALAV+DKDTPDRW NVA AV GGKTP+EVKRH+D LVE
Sbjct: 3   SSSMSSRGSGSWTAQQNKAFERALAVYDKDTPDRWANVARAV-GGKTPEEVKRHYDLLVE 62

Query: 65  DVKHIESGRVPFPKYTSSSSSSSAPRTSSNANIKDQEQRMRNMKLH 111
           DVK+IESG+VPFP Y +         T +  N+ D E+RMRN+KL+
Sbjct: 63  DVKYIESGQVPFPNYRT---------TGTRGNMDDHERRMRNLKLN 98

[Close]

BLAST of MELO3C023292 vs. NCBI nr
Match: gi|657973333|ref|XP_008378460.1| (PREDICTED: transcription factor RADIALIS-like [Malus domestica])

HSP 1 Score: 131.3 bits (329), Expect = 1.0e-27
Identity = 70/110 (63.64%), Postives = 82/110 (74.55%), Query Frame = 1


Query: 1   MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFD 60
           MAS S SS  S SS WT  QNKAFE+ALAV+DKDT DRW NVA AV GGKTP+EVKRH++
Sbjct: 1   MASSSMSSRGSGSS-WTAKQNKAFEKALAVYDKDTADRWYNVAKAV-GGKTPEEVKRHYE 60

Query: 61  RLVEDVKHIESGRVPFPKYTSSSSSSSAPRTSSNANIKDQEQRMRNMKLH 111
            LVEDVKHIESG+VPFP Y ++  +S     S      D+E+RMRN+KLH
Sbjct: 61  VLVEDVKHIESGQVPFPDYRTTGGNSHGHHMS------DEEKRMRNLKLH 102

The following BLAST results are available for this feature:

BLAST of MELO3C023292 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RADL2_ARATH	3.3e-26	57.80	Protein RADIALIS-like 2 OS=Arabidopsis thaliana GN=RL2 PE=2 SV=1	[more]
RADL1_ARATH	4.0e-24	52.38	Protein RADIALIS-like 1 OS=Arabidopsis thaliana GN=RL1 PE=2 SV=1	[more]
RAD_ANTMA	3.4e-23	55.32	Transcription factor RADIALIS OS=Antirrhinum majus GN=RAD PE=1 SV=1	[more]
RADL6_ARATH	6.4e-22	55.24	Protein RADIALIS-like 6 OS=Arabidopsis thaliana GN=RL6 PE=2 SV=1	[more]
RADL5_ARATH	5.4e-21	54.29	Protein RADIALIS-like 5 OS=Arabidopsis thaliana GN=RL5 PE=3 SV=1	[more]

BLAST of MELO3C023292 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LL58_CUCSA	3.7e-45	89.09	MYB transcription factor MYB142 OS=Cucumis sativus GN=Csa_2G247060 PE=4 SV=1	[more]
A0A0E3XW49_9LAMI	2.7e-27	60.00	Radialis OS=Rhytidophyllum auriculatum PE=2 SV=1	[more]
A0A0E3XVT9_9LAMI	2.3e-26	58.10	Radialis OS=Rhytidophyllum rupincola PE=2 SV=1	[more]
V7BUX6_PHAVU	2.3e-26	58.65	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G018500g PE=4 SV=1	[more]
A2Q4K0_MEDTR	3.9e-26	60.00	Homeodomain-related OS=Medicago truncatula GN=MtrDRAFT_AC157502g5v2 PE=4 SV=1	[more]

BLAST of MELO3C023292 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G21650.1	1.8e-27	57.80	Homeodomain-like superfamily protein	[more]
AT4G39250.1	2.2e-25	52.38	RAD-like 1	[more]
AT1G75250.1	1.0e-22	64.20	RAD-like 6	[more]
AT1G19510.1	3.0e-22	54.29	RAD-like 5	[more]
AT2G18328.1	1.2e-18	54.55	RAD-like 4	[more]

BLAST of MELO3C023292 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659122038\|ref\|XP_008460938.1\|	1.5e-55	100.00	PREDICTED: protein RADIALIS-like 2 [Cucumis melo]	[more]
gi\|449462230\|ref\|XP_004148844.1\|	5.4e-45	89.09	PREDICTED: transcription factor RADIALIS-like [Cucumis sativus]	[more]
gi\|470106642\|ref\|XP_004289671.1\|	3.5e-28	63.64	PREDICTED: transcription factor RADIALIS-like [Fragaria vesca subsp. vesca]	[more]
gi\|1000983389\|ref\|XP_015582362.1\|	7.8e-28	63.21	PREDICTED: transcription factor RADIALIS isoform X1 [Ricinus communis]	[more]
gi\|657973333\|ref\|XP_008378460.1\|	1.0e-27	63.64	PREDICTED: transcription factor RADIALIS-like [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001005	SANT/Myb
IPR009057	Homeobox-like_sf
IPR017877	Myb-like_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005634	nucleus
cellular_component	GO:0000785	chromatin
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003682	chromatin binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU61066	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C023292T1	MELO3C023292T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU61066	MU61066	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 12..65 score: 4.
IPR009057	Homeodomain-like	unknown	SSF46689	Homeodomain-like	coord: 14..71 score: 2.83
IPR017877	Myb-like domain	PROFILE	PS50090	MYB_LIKE	coord: 8..63 score: 6
None	No IPR available	PANTHER	PTHR24078	DNAJ HOMOLOG SUBFAMILY C MEMBER	coord: 1..87 score: 1.7
None	No IPR available	PANTHER	PTHR24078:SF279	DUPLICATED SANT DNA-BINDING DOMAIN-CONTAINING PROTEIN	coord: 1..87 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C023292	Csa2G247060	Cucumber (Chinese Long) v2	cumeB092
MELO3C023292	Cla016559	Watermelon (97103) v1	mewmB134
MELO3C023292	Cla015917	Watermelon (97103) v1	mewmB129
MELO3C023292	ClCG02G004920	Watermelon (Charleston Gray)	mewcgB111
MELO3C023292	ClCG11G004400	Watermelon (Charleston Gray)	mewcgB081
MELO3C023292	Cla97C11G211150	Watermelon (97103) v2	mewmbB089
MELO3C023292	Cla97C02G031880	Watermelon (97103) v2	mewmbB113
MELO3C023292	Bhi05G001105	Wax gourd	mewgoB111
MELO3C023292	Bhi10G001619	Wax gourd	mewgoB130
MELO3C023292	CSPI02G12200	Wild cucumber (PI 183967)	cpimeB090
MELO3C023292	Cucsa.109620	Cucumber (Gy14) v1	cgymeB148
MELO3C023292	Cucsa.377640	Cucumber (Gy14) v1	cgymeB611
MELO3C023292	CmaCh02G003970	Cucurbita maxima (Rimu)	cmameB549
MELO3C023292	CmaCh20G008500	Cucurbita maxima (Rimu)	cmameB503
MELO3C023292	CmoCh20G008590	Cucurbita moschata (Rifu)	cmomeB495
MELO3C023292	CmoCh02G004030	Cucurbita moschata (Rifu)	cmomeB538
MELO3C023292	Lsi10G003670	Bottle gourd (USVL1VR-Ls)	lsimeB045
MELO3C023292	Lsi11G011070	Bottle gourd (USVL1VR-Ls)	lsimeB086
MELO3C023292	Cp4.1LG16g02320	Cucurbita pepo (Zucchini)	cpemeB248
MELO3C023292	Cp4.1LG15g05490	Cucurbita pepo (Zucchini)	cpemeB210
MELO3C023292	CsGy2G012190	Cucumber (Gy14) v2	cgybmeB078
MELO3C023292	CsGy7G000030	Cucumber (Gy14) v2	cgybmeB451
MELO3C023292	Carg22945	Silver-seed gourd	carmeB0878
MELO3C023292	Carg19406	Silver-seed gourd	carmeB0320
MELO3C023292	CsaV3_7G000010	Cucumber (Chinese Long) v3	cucmeB530
MELO3C023292	CsaV3_2G014710	Cucumber (Chinese Long) v3	cucmeB097

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
MELO3C023292	MELO3C012498	Melon (DHL92) v3.5.1	memeB042

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C023292	Cucurbita pepo (Zucchini)	cpemeB656