CsGy7G000030 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy7G000030
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	protein RADIALIS-like 1
Location	Chr7 : 23421 .. 24555 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCATGACTGCTCATGGACCAAGCACTACATGGACTATAAACCAAAACAAAGCATTTGAGAAAGCTTTGGCAGTTTATGATAAAGACACACCTGAGAGATGGCTGAATGTTGCGAAGGCCATTGGTGGGAAAACTGAAGAAGAAGTGAAAAGCCATTATCAACTTCTTGTGGAGGATGTTAAGCATATTGAGTCTGGTGAAATTCCTTTTCCTTATCGAAGATCTACGCGATCAAGTCATTAAGCATTGATGGAACAAGGTAATATACATTGTTAGATCACTCCTGAACTCAATTTTTTTTTATAAAACAAAACGATAAATAGAAAAATAGAATTGAATCTGAAAGTATAAAGGTGATGATTTAAGATAAATTTAGCCTTTTGGAGTTAAATATTAATATTGAGTATGTTGTGAGGTTCCTTTCCCATAGCCAAGCTCAAGATGATTGAGAAATAATATATGTATGGAAAGAGACGAAGTTGGGGTATACCAATTGGTCAATATTTAGTTAAAATTTGGGTTGGTTTGCATTAGTTGTATTTTCGAGAGCTTAAAAAGTGCTACATTCTAGAAAGTAATTCCATGCAAGTCCATAATTACGCTTTTATGGTATTATGCTTTGAAATTCTCTCTTTCTAATGTATTTTTCTCTCTAGAACGACGTTTTGACTTTATGATGTAAAAAGTTTGAACTTGTATATAATAATTATATGTAATATCAAATAATGAAGCATTTTATTGTTCATACACATTTATCATTAATTGATTATAACACAGTATCTCTTATATTTTCTTTGTTCTTACCAGGAAGATTGATTGAGCCAGCTCCTTCAGTGTTTGAAGAATAGAAGAAGCAAAAAGCATATTATGTTTGTCTTTTTGTGCCAATTTAAAGTGTAACTGTAATTTTTTTGAATGGAATAAATGATTATTTGCTTGCTGTTTAATTTCCCTTTTTCTCCTTTTTACTTAAATTTAACATATGTGTGCTGATCAGTTGTTATTTTTGTGTTAAAATTAAATAAGTACAATTTTGGTTTTATAAGAACACAAGAAATAAAGGGGCATTTTTAAAAATAACAAACTAAATCAAAATATTTATAAGTTATAGCAAATTGTTGGATTCTAT

mRNA sequence

ATGGCTTCCATGACTGCTCATGGACCAAGCACTACATGGACTATAAACCAAAACAAAGCATTTGAGAAAGCTTTGGCAGTTTATGATAAAGACACACCTGAGAGATGGCTGAATGTTGCGAAGGCCATTGGTGGGAAAACTGAAGAAGAAGTGAAAAGCCATTATCAACTTCTTGTGGAGGATGTTAAGCATATTGAGTCTGGAAGATTGATTGAGCCAGCTCCTTCAGTGTTTGAAGAATAGAAGAAGCAAAAAGCATATTATGTTTGTCTTTTTGTGCCAATTTAAAGTGTAACTGTAATTTTTTTGAATGGAATAAATGATTATTTGCTTGCTGTTTAATTTCCCTTTTTCTCCTTTTTACTTAAATTTAACATATGTGTGCTGATCAGTTGTTATTTTTGTGTTAAAATTAAATAAGTACAATTTTGGTTTTATAAGAACACAAGAAATAAAGGGGCATTTTTAAAAATAACAAACTAAATCAAAATATTTATAAGTTATAGCAAATTGTTGGATTCTAT

Coding sequence (CDS)

ATGGCTTCCATGACTGCTCATGGACCAAGCACTACATGGACTATAAACCAAAACAAAGCATTTGAGAAAGCTTTGGCAGTTTATGATAAAGACACACCTGAGAGATGGCTGAATGTTGCGAAGGCCATTGGTGGGAAAACTGAAGAAGAAGTGAAAAGCCATTATCAACTTCTTGTGGAGGATGTTAAGCATATTGAGTCTGGAAGATTGATTGAGCCAGCTCCTTCAGTGTTTGAAGAATAG

Protein sequence

MASMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVEDVKHIESGRLIEPAPSVFEE

Homology

[Close]

BLAST of CsGy7G000030 vs. NCBI nr
Match: KGN44078.1 (hypothetical protein Csa_7G169590 [Cucumis sativus])

HSP 1 Score: 164.9 bits (416), Expect = 1.2e-37
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1  MASMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVE 60
          MASMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVE
Sbjct: 1  MASMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVE 60

Query: 61 DVKHIESGRLIEPAPSVFEE 81
          DVKHIESGRLIEPAPSVFEE
Sbjct: 61 DVKHIESGRLIEPAPSVFEE 80

[Close]

BLAST of CsGy7G000030 vs. NCBI nr
Match: XP_008447025.1 (PREDICTED: protein RADIALIS-like 1 [Cucumis melo])

HSP 1 Score: 120.2 bits (300), Expect = 3.3e-24
Identity = 59/73 (80.82%), Postives = 65/73 (89.04%), Query Frame = 0


Query: 1  MASMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVE 60
          MASM+AHG S  WT  QNKAFEKALA+YDKDTP+RWLNVAKAIGGKTEEEVK HYQLL+E
Sbjct: 1  MASMSAHG-SGVWTAKQNKAFEKALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLE 60

Query: 61 DVKHIESGRLIEP 74
          DVKHIESG++  P
Sbjct: 61 DVKHIESGKVPFP 72

[Close]

BLAST of CsGy7G000030 vs. NCBI nr
Match: XP_022952074.1 (protein RADIALIS-like 1 [Cucurbita moschata] >XP_023511408.1 protein RADIALIS-like 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 119.4 bits (298), Expect = 5.6e-24
Identity = 57/73 (78.08%), Postives = 64/73 (87.67%), Query Frame = 0


Query: 1  MASMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVE 60
          MASM+AHG + +WT  QNKAFEKALAVYD+DTPERWLNVAKAIGGKTEEEVK HYQLL++
Sbjct: 1  MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLK 60

Query: 61 DVKHIESGRLIEP 74
          DVK IESG +  P
Sbjct: 61 DVKQIESGEVPFP 73

[Close]

BLAST of CsGy7G000030 vs. NCBI nr
Match: XP_011658943.1 (PREDICTED: protein RADIALIS-like 1 [Cucumis sativus] >KGN44073.1 hypothetical protein Csa_7G168060 [Cucumis sativus])

HSP 1 Score: 119.0 bits (297), Expect = 7.3e-24
Identity = 58/73 (79.45%), Postives = 65/73 (89.04%), Query Frame = 0


Query: 1  MASMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVE 60
          MASM+AHG S+ WT  +NKAFEKALA+YDKDTPERWLNVAKAIGGKTEEEVK HYQLL+E
Sbjct: 1  MASMSAHG-SSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLE 60

Query: 61 DVKHIESGRLIEP 74
          DV HIESG++  P
Sbjct: 61 DVNHIESGQIPFP 72

[Close]

BLAST of CsGy7G000030 vs. NCBI nr
Match: XP_008447026.1 (PREDICTED: protein RADIALIS-like 1 [Cucumis melo])

HSP 1 Score: 117.9 bits (294), Expect = 1.6e-23
Identity = 57/73 (78.08%), Postives = 65/73 (89.04%), Query Frame = 0


Query: 1  MASMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVE 60
          MASM+AHG ST WT  +NKAFEKALA+YDKDTPERWLNVAKAIGGKTEE+VK HYQLL+E
Sbjct: 1  MASMSAHG-STQWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLE 60

Query: 61 DVKHIESGRLIEP 74
          DV HIE+G++  P
Sbjct: 61 DVNHIENGQIPFP 72

[Close]

BLAST of CsGy7G000030 vs. TAIR10
Match: AT1G75250.1 (RAD-like 6)

HSP 1 Score: 97.1 bits (240), Expect = 5.4e-21
Identity = 45/67 (67.16%), Postives = 54/67 (80.60%), Query Frame = 0


Query: 13 WTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVEDVKHIESGRLIE 72
          WT +QNK FE+ALAVYDKDTP+RW NVAKA+GGKT EEVK HY +LVED+ +IE+GR+  
Sbjct: 12 WTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLINIETGRVPL 71

Query: 73 PAPSVFE 80
          P    FE
Sbjct: 72 PNYKTFE 78

[Close]

BLAST of CsGy7G000030 vs. TAIR10
Match: AT2G21650.1 (Homeodomain-like superfamily protein)

HSP 1 Score: 92.4 bits (228), Expect = 1.3e-19
Identity = 43/71 (60.56%), Postives = 57/71 (80.28%), Query Frame = 0


Query: 3  SMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVEDV 62
          SM+++G S +WT+ QNKAFE+ALAVYD+DTP+RW NVA+A+GGKT EE K  Y LLV D+
Sbjct: 5  SMSSYG-SGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDI 64

Query: 63 KHIESGRLIEP 74
          + IE+G +  P
Sbjct: 65 ESIENGHVPFP 74

[Close]

BLAST of CsGy7G000030 vs. TAIR10
Match: AT4G39250.1 (RAD-like 1)

HSP 1 Score: 92.0 bits (227), Expect = 1.7e-19
Identity = 44/74 (59.46%), Postives = 55/74 (74.32%), Query Frame = 0


Query: 1  MASMTAHGPST-TWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLV 60
          MAS +    S+ +WT  QNKAFE+ALA YD+DTP RW NVAK +GGKT EEVK HY+LLV
Sbjct: 1  MASSSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLV 60

Query: 61 EDVKHIESGRLIEP 74
          +D+  IE+G +  P
Sbjct: 61 QDINSIENGHVPFP 74

[Close]

BLAST of CsGy7G000030 vs. TAIR10
Match: AT1G19510.1 (RAD-like 5)

HSP 1 Score: 87.8 bits (216), Expect = 3.3e-18
Identity = 39/57 (68.42%), Postives = 48/57 (84.21%), Query Frame = 0


Query: 10 STTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVEDVKHIE 67
          S++WT  QNK FE+ALAVYDKDTP+RW NVAKA+G K+ EEVK HY +LVED+ +IE
Sbjct: 9  SSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVEDLMNIE 65

[Close]

BLAST of CsGy7G000030 vs. TAIR10
Match: AT2G18328.1 (RAD-like 4)

HSP 1 Score: 84.7 bits (208), Expect = 2.8e-17
Identity = 36/64 (56.25%), Postives = 50/64 (78.12%), Query Frame = 0


Query: 10 STTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVEDVKHIESGR 69
          +++WT  ++K FE ALA +DKDTP+RW  +A+A+GGK+ EEVK HY+LL+ DV  IESGR
Sbjct: 8  TSSWTAREDKQFEMALAKFDKDTPDRWQKIARAVGGKSTEEVKRHYELLLRDVNDIESGR 67

Query: 70 LIEP 74
            +P
Sbjct: 68 YPQP 71

[Close]

BLAST of CsGy7G000030 vs. Swiss-Prot
Match: sp|Q1A173|RADL6_ARATH (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 9.7e-20
Identity = 45/67 (67.16%), Postives = 54/67 (80.60%), Query Frame = 0


Query: 13 WTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVEDVKHIESGRLIE 72
          WT +QNK FE+ALAVYDKDTP+RW NVAKA+GGKT EEVK HY +LVED+ +IE+GR+  
Sbjct: 12 WTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLINIETGRVPL 71

Query: 73 PAPSVFE 80
          P    FE
Sbjct: 72 PNYKTFE 78

[Close]

BLAST of CsGy7G000030 vs. Swiss-Prot
Match: sp|Q58FS3|RAD_ANTMA (Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 2.2e-19
Identity = 41/69 (59.42%), Postives = 55/69 (79.71%), Query Frame = 0


Query: 5  TAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVEDVKH 64
          +  G    W+  +NKAFE+ALAVYDKDTP+RW NVA+A+ G+T EEVK HY++LVED+K+
Sbjct: 3  STRGSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKY 62

Query: 65 IESGRLIEP 74
          IESG++  P
Sbjct: 63 IESGKVPFP 71

[Close]

BLAST of CsGy7G000030 vs. Swiss-Prot
Match: sp|Q9SIJ5|RADL2_ARATH (Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 2.4e-18
Identity = 43/71 (60.56%), Postives = 57/71 (80.28%), Query Frame = 0


Query: 3  SMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVEDV 62
          SM+++G S +WT+ QNKAFE+ALAVYD+DTP+RW NVA+A+GGKT EE K  Y LLV D+
Sbjct: 5  SMSSYG-SGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDI 64

Query: 63 KHIESGRLIEP 74
          + IE+G +  P
Sbjct: 65 ESIENGHVPFP 74

[Close]

BLAST of CsGy7G000030 vs. Swiss-Prot
Match: sp|F4JVB8|RADL1_ARATH (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 3.1e-18
Identity = 44/74 (59.46%), Postives = 55/74 (74.32%), Query Frame = 0


Query: 1  MASMTAHGPST-TWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLV 60
          MAS +    S+ +WT  QNKAFE+ALA YD+DTP RW NVAK +GGKT EEVK HY+LLV
Sbjct: 1  MASSSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLV 60

Query: 61 EDVKHIESGRLIEP 74
          +D+  IE+G +  P
Sbjct: 61 QDINSIENGHVPFP 74

[Close]

BLAST of CsGy7G000030 vs. Swiss-Prot
Match: sp|Q6NNN0|RADL3_ARATH (Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.6e-17
Identity = 39/64 (60.94%), Postives = 50/64 (78.12%), Query Frame = 0


Query: 10 STTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVEDVKHIESGR 69
          S +WT  +NK FE+ALA YD+DTP+RW NVA+A+GGK+ EEV+ HY+LL+ DV  IESGR
Sbjct: 9  SASWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELLIRDVNDIESGR 68

Query: 70 LIEP 74
             P
Sbjct: 69 YPHP 72

[Close]

BLAST of CsGy7G000030 vs. TrEMBL
Match: tr|A0A0A0K3K5|A0A0A0K3K5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G169590 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 7.7e-38
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1  MASMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVE 60
          MASMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVE
Sbjct: 1  MASMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVE 60

Query: 61 DVKHIESGRLIEPAPSVFEE 81
          DVKHIESGRLIEPAPSVFEE
Sbjct: 61 DVKHIESGRLIEPAPSVFEE 80

[Close]

BLAST of CsGy7G000030 vs. TrEMBL
Match: tr|A0A1S3BGF6|A0A1S3BGF6_CUCME (protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489576 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 2.2e-24
Identity = 59/73 (80.82%), Postives = 65/73 (89.04%), Query Frame = 0


Query: 1  MASMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVE 60
          MASM+AHG S  WT  QNKAFEKALA+YDKDTP+RWLNVAKAIGGKTEEEVK HYQLL+E
Sbjct: 1  MASMSAHG-SGVWTAKQNKAFEKALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLE 60

Query: 61 DVKHIESGRLIEP 74
          DVKHIESG++  P
Sbjct: 61 DVKHIESGKVPFP 72

[Close]

BLAST of CsGy7G000030 vs. TrEMBL
Match: tr|A0A0A0K3K0|A0A0A0K3K0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G168060 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 4.8e-24
Identity = 58/73 (79.45%), Postives = 65/73 (89.04%), Query Frame = 0


Query: 1  MASMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVE 60
          MASM+AHG S+ WT  +NKAFEKALA+YDKDTPERWLNVAKAIGGKTEEEVK HYQLL+E
Sbjct: 1  MASMSAHG-SSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLE 60

Query: 61 DVKHIESGRLIEP 74
          DV HIESG++  P
Sbjct: 61 DVNHIESGQIPFP 72

[Close]

BLAST of CsGy7G000030 vs. TrEMBL
Match: tr|A0A1S3BGF0|A0A1S3BGF0_CUCME (protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489577 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.1e-23
Identity = 57/73 (78.08%), Postives = 65/73 (89.04%), Query Frame = 0


Query: 1  MASMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVE 60
          MASM+AHG ST WT  +NKAFEKALA+YDKDTPERWLNVAKAIGGKTEE+VK HYQLL+E
Sbjct: 1  MASMSAHG-STQWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLE 60

Query: 61 DVKHIESGRLIEP 74
          DV HIE+G++  P
Sbjct: 61 DVNHIENGQIPFP 72

[Close]

BLAST of CsGy7G000030 vs. TrEMBL
Match: tr|A0A0A0K344|A0A0A0K344_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G169070 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.4e-23
Identity = 57/73 (78.08%), Postives = 65/73 (89.04%), Query Frame = 0


Query: 1  MASMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVE 60
          MAS++AHG S  WT  QNKAFE+ALA+YDKDTP+RWLNVAKAIGGKTEEEVK HYQLL+E
Sbjct: 1  MASLSAHG-SGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLE 60

Query: 61 DVKHIESGRLIEP 74
          DVKHIESG++  P
Sbjct: 61 DVKHIESGKVPFP 72

The following BLAST results are available for this feature:

BLAST of CsGy7G000030 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44078.1	1.2e-37	100.00	hypothetical protein Csa_7G169590 [Cucumis sativus]	[more]
XP_008447025.1	3.3e-24	80.82	PREDICTED: protein RADIALIS-like 1 [Cucumis melo]	[more]
XP_022952074.1	5.6e-24	78.08	protein RADIALIS-like 1 [Cucurbita moschata] >XP_023511408.1 protein RADIALIS-li...	[more]
XP_011658943.1	7.3e-24	79.45	PREDICTED: protein RADIALIS-like 1 [Cucumis sativus] >KGN44073.1 hypothetical pr...	[more]
XP_008447026.1	1.6e-23	78.08	PREDICTED: protein RADIALIS-like 1 [Cucumis melo]	[more]

BLAST of CsGy7G000030 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G75250.1	5.4e-21	67.16	RAD-like 6	[more]
AT2G21650.1	1.3e-19	60.56	Homeodomain-like superfamily protein	[more]
AT4G39250.1	1.7e-19	59.46	RAD-like 1	[more]
AT1G19510.1	3.3e-18	68.42	RAD-like 5	[more]
AT2G18328.1	2.8e-17	56.25	RAD-like 4	[more]

BLAST of CsGy7G000030 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q1A173\|RADL6_ARATH	9.7e-20	67.16	Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1	[more]
sp\|Q58FS3\|RAD_ANTMA	2.2e-19	59.42	Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1	[more]
sp\|Q9SIJ5\|RADL2_ARATH	2.4e-18	60.56	Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1	[more]
sp\|F4JVB8\|RADL1_ARATH	3.1e-18	59.46	Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1	[more]
sp\|Q6NNN0\|RADL3_ARATH	1.6e-17	60.94	Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1	[more]

BLAST of CsGy7G000030 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K3K5\|A0A0A0K3K5_CUCSA	7.7e-38	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G169590 PE=4 SV=1	[more]
tr\|A0A1S3BGF6\|A0A1S3BGF6_CUCME	2.2e-24	80.82	protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489576 PE=4 SV=1	[more]
tr\|A0A0A0K3K0\|A0A0A0K3K0_CUCSA	4.8e-24	79.45	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G168060 PE=4 SV=1	[more]
tr\|A0A1S3BGF0\|A0A1S3BGF0_CUCME	1.1e-23	78.08	protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489577 PE=4 SV=1	[more]
tr\|A0A0A0K344\|A0A0A0K344_CUCSA	1.4e-23	78.08	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G169070 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR009057	Homeobox-like_sf
IPR001005	SANT/Myb

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy7G000030.1	CsGy7G000030.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 9..61 e-value: 4.2E-4 score: 29.6
IPR001005	SANT/Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 12..57 e-value: 6.0E-6 score: 26.2
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 19..59 e-value: 1.34139E-4 score: 34.0882
None	No IPR available	GENE3D	G3DSA:1.10.10.60		coord: 5..71 e-value: 7.7E-20 score: 72.5
None	No IPR available	PANTHER	PTHR43952	FAMILY NOT NAMED	coord: 1..73
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	SSF46689	Homeodomain-like	coord: 11..67

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy7G000030	Cla016559	Watermelon (97103) v1	cgybwmB571
CsGy7G000030	Cla015915	Watermelon (97103) v1	cgybwmB566
CsGy7G000030	Csa7G000020	Cucumber (Chinese Long) v2	cgybcuB324
CsGy7G000030	Csa2G247060	Cucumber (Chinese Long) v2	cgybcuB295
CsGy7G000030	MELO3C023292	Melon (DHL92) v3.5.1	cgybmeB451
CsGy7G000030	MELO3C012498	Melon (DHL92) v3.5.1	cgybmeB469
CsGy7G000030	ClCG02G004900	Watermelon (Charleston Gray)	cgybwcgB506
CsGy7G000030	CSPI07G00010	Wild cucumber (PI 183967)	cgybcpiB332
CsGy7G000030	CSPI02G12200	Wild cucumber (PI 183967)	cgybcpiB303
CsGy7G000030	CmoCh11G011190	Cucurbita moschata (Rifu)	cgybcmoB882
CsGy7G000030	Lsi10G003670	Bottle gourd (USVL1VR-Ls)	cgyblsiB456
CsGy7G000030	Cp4.1LG04g00900	Cucurbita pepo (Zucchini)	cgybcpeB970

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy7G000030	Cucumber (Chinese Long) v3	cgybcucB318
CsGy7G000030	Cucumber (Chinese Long) v3	cgybcucB348
CsGy7G000030	Watermelon (97103) v2	cgybwmbB492
CsGy7G000030	Watermelon (97103) v2	cgybwmbB502
CsGy7G000030	Wax gourd	cgybwgoB639
CsGy7G000030	Wax gourd	cgybwgoB653
CsGy7G000030	Cucumber (Gy14) v2	cgybcgybB071
CsGy7G000030	Cucurbita maxima (Rimu)	cgybcmaB900
CsGy7G000030	Cucurbita maxima (Rimu)	cgybcmaB944
CsGy7G000030	Cucurbita maxima (Rimu)	cgybcmaB956
CsGy7G000030	Cucurbita maxima (Rimu)	cgybcmaB961
CsGy7G000030	Watermelon (Charleston Gray)	cgybwcgB495
CsGy7G000030	Cucurbita moschata (Rifu)	cgybcmoB927
CsGy7G000030	Cucurbita moschata (Rifu)	cgybcmoB940
CsGy7G000030	Cucurbita moschata (Rifu)	cgybcmoB944
CsGy7G000030	Cucurbita pepo (Zucchini)	cgybcpeB910
CsGy7G000030	Cucurbita pepo (Zucchini)	cgybcpeB920
CsGy7G000030	Bottle gourd (USVL1VR-Ls)	cgyblsiB462
CsGy7G000030	Melon (DHL92) v3.6.1	cgybmedB466
CsGy7G000030	Silver-seed gourd	carcgybB0188
CsGy7G000030	Silver-seed gourd	carcgybB0326