CSPI07G00010 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI07G00010
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	DnaJ like subfamily C member 2
Location	Chr7 : 24743 .. 26922 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTGCTTCCTATATTTCATATATAAATCTCTCTCATTTTTCTCCTTTACATCTCCCCAAGAAGAAAAAAAATTCCATTTCTTTCCAATGGCTTCGAGCTCTTTGAAGCAGCAACGACCAGAGACGACATGGACGCCAAAGCAAAACAAGCTGTTCGAGAAAGCATTGGCATTGTACGACAAAGATACACCTGAGAGATGGCAAAATATCGCCACTGCAGTAGGCGGGAAGTCGGCCGATGAAGTTCAAAGACACTATGAGATACTCTTGGAAGACCTCCGGCGGATCGAGTCCGGTCGTGTTCCTATTCCCAATTACCGACGCACTAGCAATCGAGATGAAGAGTTGAGGTTAGTGAACTCAAAAGATGATATTCTTTTCTTCTTTTCTGTTTTGATTATTGGATGGTGATTCAAAATATATATGTCGTTTAACAAATATTATTGAATACATGTGAAACATATCTATATCTCAACCATAGTTTTTAATATTTCAAACTATTGAAGCTGAAGATAGGTATCATAATTTGGTTTTTTGGGCACTAGTTCCTTTCTATCATGTCGAATATTCTTTGGTTGGTTTTTGAGATTTTTGTATTTTGGTACCAGGCTTAGGTGAGTTTTATGTGCTTGGTTTTGTAGTTTTGTGATTAGGGTTTAGATTTTCTTTATATGGTAGGTGAATATTTTTGAGACTGAGAATAATATTTTGTTGGTTGAATTTATTGAAATTTATTGGTTAGTTTGGTGGCCACGTTCTTTCAAGTATATAATTAATTTTGAGTTGGTATAAATTATTTAAGTTTAACCTTTTAAATATATAGAAATTAGAAATGTGTGTTTGGAATAAAATTTGAAGTATTTAATTTTCAAAATAAGTTCTTTAGAAGAAAACTACCTTTAGTAATCATTCAAAATAGTTTTGGAGTGTTTTTTAAACAATTTTTACCAAAAGAACTTAAATAAAAAAGTTTAAATTGAGTTAAAAAAATATTTTTTAAGTCAATTTAAATAGAGCCTAAAAGTTTGGTAAAATTGATTCAAGAATAATTTTAAAATTAATACAATTACTCATATTTTTCTATATTTTTCAATCCAACCAACAAAATCAAACATTAAACAAACAAGAGTTCAACAATTTTGTTCTTCTTTTTTCTTTCTTTTGAAAATGTATTCACAAACAAGAGATGAGGAGATGATCGATACAATGCAACATCCTATCGAGATTGGCACACTCCTAACATTCAACATAATTAAGCTTATGGTTGGTTAATTATCTTTAACCAACAAAAGTTGAAAAATATATATAACCCAAAAAAAATGCATAAACTAATGGGAAAACTCCAACCAAAAAGGAAAAACATTTAATTATCATAGAAAAATGTTAGAGCACTAAATAAATTAATGATAAAATATAATCTACTTTCAATTCTAGAATTACAAAAGAAATAATAACAACAATAATAATAATTTTCTTGGTGTCTCTAAAATCACAACTAAACACAAAAGTTGATAATCACGAAAAATCTAATTACATTAACTCTATATAACACTAAATTAACACAAAACTCAAACAGGTAAAGATATGACATTATTATAACAAAAGTAAGCTTAATTCAAGAGTTATCATCCTGATCTCTTCCATCTTAAAAGATTAAAAGTTGCATTTCTCATCCCAGATCTCTTCCATCTTAAAAGATTAAAAGCTGCATTTCTCATCCCAGAATTATTGTATTAAAATAAAAGATATGATGACACTATAAAGATTTAAAACAGAAGAGCATCAGTTGGAACACATGCAAGATCTCCAACTTTGATTCAATGATTTAACTGTGACTTGCTTTAAGCTCTTTTCCCCATTCCTTTAAGTTGTAGGACTAATTTGAAGAAAACACATTATATCTTAAATAGGACAGTGAAAGAAAAATCAACAGAATAAGCTAAAAGTTTTTTATGTTGAGATGCGTTCATCACTTTGCCTTTGATTTTTGTTTTGCTAGGCTGTTGAAGTATCTGAAGCTTCAATGAAGAACTTGCCTACCGCTGCCACTATTCTCTTTCAATATCTCATCAAACACAAATGGCTCACTTGGCCTAGGTGGATTCATAAATATTCTACTGTACAAGTTTTATATCTTTTAAATCAACTCTCTCTCAACAAATTAAAAGTGTACAACCAACC

mRNA sequence

ATGGCTTCGAGCTCTTTGAAGCAGCAACGACCAGAGACGACATGGACGCCAAAGCAAAACAAGCTGTTCGAGAAAGCATTGGCATTGTACGACAAAGATACACCTGAGAGATGGCAAAATATCGCCACTGCAGTAGGCGGGAAGTCGGCCGATGAAGTTCAAAGACACTATGAGATACTCTTGGAAGACCTCCGGCGGATCGAGTCCGGTCGTGTTCCTATTCCCAATTACCGACGCACTAGCAATCGAGATGAAGAGTTGAGGCTGTTGAAGTATCTGAAGCTTCAATGA

Coding sequence (CDS)

ATGGCTTCGAGCTCTTTGAAGCAGCAACGACCAGAGACGACATGGACGCCAAAGCAAAACAAGCTGTTCGAGAAAGCATTGGCATTGTACGACAAAGATACACCTGAGAGATGGCAAAATATCGCCACTGCAGTAGGCGGGAAGTCGGCCGATGAAGTTCAAAGACACTATGAGATACTCTTGGAAGACCTCCGGCGGATCGAGTCCGGTCGTGTTCCTATTCCCAATTACCGACGCACTAGCAATCGAGATGAAGAGTTGAGGCTGTTGAAGTATCTGAAGCTTCAATGA

Homology

[Close]

BLAST of CSPI07G00010 vs. Swiss-Prot
Match: RADL5_ARATH (Protein RADIALIS-like 5 OS=Arabidopsis thaliana GN=RL5 PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.3e-23
Identity = 56/103 (54.37%), Postives = 77/103 (74.76%), Query Frame = 1


Query: 1   MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60
           MASSS+      ++WT KQNK+FE+ALA+YDKDTP+RWQN+A AVG KSA+EV+RHY+IL
Sbjct: 1   MASSSMSSS---SSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDIL 60

Query: 61  LEDLRRIESGRVPIPNYRR----TSNR---DEELRLLKYLKLQ 97
           +EDL  IE   VP+P Y+     + +R   D +LRL+K +++Q
Sbjct: 61  VEDLMNIEQDLVPLPKYKTVDVGSKSRGIDDFDLRLMKNMRIQ 100

[Close]

BLAST of CSPI07G00010 vs. Swiss-Prot
Match: RADL6_ARATH (Protein RADIALIS-like 6 OS=Arabidopsis thaliana GN=RL6 PE=2 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 5.0e-23
Identity = 55/100 (55.00%), Postives = 72/100 (72.00%), Query Frame = 1


Query: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60
          MAS+S     P   WT  QNK+FE+ALA+YDKDTP+RW N+A AVGGK+ +EV+RHY+IL
Sbjct: 1  MASNSRSSISP---WTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDIL 60

Query: 61 LEDLRRIESGRVPIPNYR-----RTSNRDEELRLLKYLKL 96
          +EDL  IE+GRVP+PNY+       S  D + R +K LK+
Sbjct: 61 VEDLINIETGRVPLPNYKTFESNSRSINDFDTRKMKNLKI 97

[Close]

BLAST of CSPI07G00010 vs. Swiss-Prot
Match: RADL3_ARATH (Protein RADIALIS-like 3 OS=Arabidopsis thaliana GN=RL3 PE=2 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 5.0e-23
Identity = 50/82 (60.98%), Postives = 63/82 (76.83%), Query Frame = 1


Query: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60
          MAS+S+       +WT K+NKLFE+ALA YD+DTP+RW N+A AVGGKSA+EV+RHYE+L
Sbjct: 1  MASNSMSSS---ASWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELL 60

Query: 61 LEDLRRIESGRVPIPNYRRTSN 83
          + D+  IESGR P PNYR   N
Sbjct: 61 IRDVNDIESGRYPHPNYRSNGN 79

[Close]

BLAST of CSPI07G00010 vs. Swiss-Prot
Match: RADL1_ARATH (Protein RADIALIS-like 1 OS=Arabidopsis thaliana GN=RL1 PE=2 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.9e-22
Identity = 53/101 (52.48%), Postives = 73/101 (72.28%), Query Frame = 1


Query: 1   MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60
           MASSS+  Q    +WT KQNK FE+ALA YD+DTP RWQN+A  VGGK+ +EV+RHYE+L
Sbjct: 1   MASSSMSSQS-SGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELL 60

Query: 61  LEDLRRIESGRVPIPNYRR----TSNR-DEELRLLKYLKLQ 97
           ++D+  IE+G VP PNYR     T+ R  +E + ++ ++LQ
Sbjct: 61  VQDINSIENGHVPFPNYRTSGGCTNGRLSQEEKRMRNMRLQ 100

[Close]

BLAST of CSPI07G00010 vs. Swiss-Prot
Match: RAD_ANTMA (Transcription factor RADIALIS OS=Antirrhinum majus GN=RAD PE=1 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 4.7e-21
Identity = 45/83 (54.22%), Postives = 65/83 (78.31%), Query Frame = 1


Query: 15 WTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRRIESGRVPI 74
          W+ K+NK FE+ALA+YDKDTP+RW N+A AV G++ +EV++HYEIL+ED++ IESG+VP 
Sbjct: 11 WSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVPF 70

Query: 75 PNYRRT-SNRDEELRLLKYLKLQ 97
          PNYR T  N   + +  + LK++
Sbjct: 71 PNYRTTGGNMKTDEKRFRNLKIR 93

[Close]

BLAST of CSPI07G00010 vs. TrEMBL
Match: A0A0A0K2A2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G000020 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 5.9e-47
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 1


Query: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60
          MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL
Sbjct: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60

Query: 61 LEDLRRIESGRVPIPNYRRTSNRDEELRLLKYLKLQ 97
          LEDLRRIESGRVPIPNYRRTSNRDEELRLLKYLKLQ
Sbjct: 61 LEDLRRIESGRVPIPNYRRTSNRDEELRLLKYLKLQ 96

[Close]

BLAST of CSPI07G00010 vs. TrEMBL
Match: I1LJC8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_11G117200 PE=4 SV=2)

HSP 1 Score: 149.4 bits (376), Expect = 2.2e-33
Identity = 77/99 (77.78%), Postives = 86/99 (86.87%), Query Frame = 1


Query: 1  MASSSL-KQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEI 60
          MASSSL KQ+  +++WTPKQNKLFEKALA YDKDTPERWQN+A AVGGKSADEV+RHYEI
Sbjct: 1  MASSSLSKQKASDSSWTPKQNKLFEKALAKYDKDTPERWQNVAKAVGGKSADEVKRHYEI 60

Query: 61 LLEDLRRIESGRVPIPNYRRT---SNRDEELRLLKYLKL 96
          LLEDLR IESGRVP+P Y+ T   +N DEE RLLKYLKL
Sbjct: 61 LLEDLRHIESGRVPLPKYKSTGSSTNVDEEERLLKYLKL 99

[Close]

BLAST of CSPI07G00010 vs. TrEMBL
Match: A0A0B2RZB1_GLYSO (DnaJ like subfamily C member 2 OS=Glycine soja GN=glysoja_020526 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 2.2e-33
Identity = 77/99 (77.78%), Postives = 86/99 (86.87%), Query Frame = 1


Query: 1  MASSSL-KQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEI 60
          MASSSL KQ+  +++WTPKQNKLFEKALA YDKDTPERWQN+A AVGGKSADEV+RHYEI
Sbjct: 1  MASSSLSKQKASDSSWTPKQNKLFEKALAKYDKDTPERWQNVAKAVGGKSADEVKRHYEI 60

Query: 61 LLEDLRRIESGRVPIPNYRRT---SNRDEELRLLKYLKL 96
          LLEDLR IESGRVP+P Y+ T   +N DEE RLLKYLKL
Sbjct: 61 LLEDLRHIESGRVPLPKYKSTGSSTNVDEEERLLKYLKL 99

[Close]

BLAST of CSPI07G00010 vs. TrEMBL
Match: V7AE35_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G044900g PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 3.2e-32
Identity = 73/99 (73.74%), Postives = 85/99 (85.86%), Query Frame = 1


Query: 1  MASSSLKQQRP-ETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEI 60
          MASSS+ +Q+P +++WTPKQNKLFEKALA YDKDTP+RWQN+ATAVG KS DEV+RHYEI
Sbjct: 1  MASSSISKQKPSDSSWTPKQNKLFEKALAKYDKDTPDRWQNVATAVGDKSPDEVKRHYEI 60

Query: 61 LLEDLRRIESGRVPIPNYRRT---SNRDEELRLLKYLKL 96
          LLEDLR IESG VP+P YR T   +N D+E RLLKYLKL
Sbjct: 61 LLEDLRHIESGHVPLPKYRSTGSSTNVDDEERLLKYLKL 99

[Close]

BLAST of CSPI07G00010 vs. TrEMBL
Match: K7LSY9_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_12G042900 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 5.4e-32
Identity = 74/99 (74.75%), Postives = 85/99 (85.86%), Query Frame = 1


Query: 1  MASSSL-KQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEI 60
          MASSSL KQ+  +++WTPKQNKLFEKALA YDKDTP+RWQN+A AVGGKSADEV+RHYEI
Sbjct: 1  MASSSLSKQKASDSSWTPKQNKLFEKALAKYDKDTPDRWQNVAKAVGGKSADEVKRHYEI 60

Query: 61 LLEDLRRIESGRVPIPNYRRT---SNRDEELRLLKYLKL 96
          LLEDLR IESG VP+P Y+ T   +N +EE RLLKYLKL
Sbjct: 61 LLEDLRHIESGHVPLPKYKSTGSSTNVEEEERLLKYLKL 99

[Close]

BLAST of CSPI07G00010 vs. TAIR10
Match: AT1G19510.1 (AT1G19510.1 RAD-like 5)

HSP 1 Score: 110.2 bits (274), Expect = 7.5e-25
Identity = 56/103 (54.37%), Postives = 77/103 (74.76%), Query Frame = 1


Query: 1   MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60
           MASSS+      ++WT KQNK+FE+ALA+YDKDTP+RWQN+A AVG KSA+EV+RHY+IL
Sbjct: 1   MASSSMSSS---SSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDIL 60

Query: 61  LEDLRRIESGRVPIPNYRR----TSNR---DEELRLLKYLKLQ 97
           +EDL  IE   VP+P Y+     + +R   D +LRL+K +++Q
Sbjct: 61  VEDLMNIEQDLVPLPKYKTVDVGSKSRGIDDFDLRLMKNMRIQ 100

[Close]

BLAST of CSPI07G00010 vs. TAIR10
Match: AT1G75250.1 (AT1G75250.1 RAD-like 6)

HSP 1 Score: 106.7 bits (265), Expect = 8.3e-24
Identity = 54/99 (54.55%), Postives = 71/99 (71.72%), Query Frame = 1


Query: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60
          MAS+S     P   WT  QNK+FE+ALA+YDKDTP+RW N+A AVGGK+ +EV+RHY+IL
Sbjct: 1  MASNSRSSISP---WTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDIL 60

Query: 61 LEDLRRIESGRVPIPNYR------RTSNRDEELRLLKYL 94
          +EDL  IE+GRVP+PNY+      R+ N  +   + KYL
Sbjct: 61 VEDLINIETGRVPLPNYKTFESNSRSINDFDTRYITKYL 96

[Close]

BLAST of CSPI07G00010 vs. TAIR10
Match: AT4G39250.1 (AT4G39250.1 RAD-like 1)

HSP 1 Score: 106.3 bits (264), Expect = 1.1e-23
Identity = 53/101 (52.48%), Postives = 73/101 (72.28%), Query Frame = 1


Query: 1   MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60
           MASSS+  Q    +WT KQNK FE+ALA YD+DTP RWQN+A  VGGK+ +EV+RHYE+L
Sbjct: 1   MASSSMSSQS-SGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELL 60

Query: 61  LEDLRRIESGRVPIPNYRR----TSNR-DEELRLLKYLKLQ 97
           ++D+  IE+G VP PNYR     T+ R  +E + ++ ++LQ
Sbjct: 61  VQDINSIENGHVPFPNYRTSGGCTNGRLSQEEKRMRNMRLQ 100

[Close]

BLAST of CSPI07G00010 vs. TAIR10
Match: AT2G18328.1 (AT2G18328.1 RAD-like 4)

HSP 1 Score: 99.8 bits (247), Expect = 1.0e-21
Identity = 48/81 (59.26%), Postives = 61/81 (75.31%), Query Frame = 1


Query: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60
          MASSS+      ++WT +++K FE ALA +DKDTP+RWQ IA AVGGKS +EV+RHYE+L
Sbjct: 1  MASSSMST----SSWTAREDKQFEMALAKFDKDTPDRWQKIARAVGGKSTEEVKRHYELL 60

Query: 61 LEDLRRIESGRVPIPNYRRTS 82
          L D+  IESGR P P YR T+
Sbjct: 61 LRDVNDIESGRYPQPRYRNTN 77

[Close]

BLAST of CSPI07G00010 vs. TAIR10
Match: AT2G21650.1 (AT2G21650.1 Homeodomain-like superfamily protein)

HSP 1 Score: 99.0 bits (245), Expect = 1.7e-21
Identity = 50/103 (48.54%), Postives = 71/103 (68.93%), Query Frame = 1


Query: 1   MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60
           MAS S+       +WT KQNK FE+ALA+YD+DTP+RW N+A AVGGK+ +E +R Y++L
Sbjct: 1   MASGSMSSYG-SGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLL 60

Query: 61  LEDLRRIESGRVPIPNYRRTSN-------RDEELRLLKYLKLQ 97
           + D+  IE+G VP P+Y+ T+        RDEE R ++ +KLQ
Sbjct: 61  VRDIESIENGHVPFPDYKTTTGNSNRGRLRDEEKR-MRSMKLQ 101

[Close]

BLAST of CSPI07G00010 vs. NCBI nr
Match: gi|449466753|ref|XP_004151090.1| (PREDICTED: protein RADIALIS-like 3 [Cucumis sativus])

HSP 1 Score: 194.5 bits (493), Expect = 8.5e-47
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 1


Query: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60
          MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL
Sbjct: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60

Query: 61 LEDLRRIESGRVPIPNYRRTSNRDEELRLLKYLKLQ 97
          LEDLRRIESGRVPIPNYRRTSNRDEELRLLKYLKLQ
Sbjct: 61 LEDLRRIESGRVPIPNYRRTSNRDEELRLLKYLKLQ 96

[Close]

BLAST of CSPI07G00010 vs. NCBI nr
Match: gi|659092344|ref|XP_008447023.1| (PREDICTED: protein RADIALIS-like 3 [Cucumis melo])

HSP 1 Score: 190.3 bits (482), Expect = 1.6e-45
Identity = 94/96 (97.92%), Postives = 95/96 (98.96%), Query Frame = 1


Query: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60
          MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL
Sbjct: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60

Query: 61 LEDLRRIESGRVPIPNYRRTSNRDEELRLLKYLKLQ 97
          LEDLR+IESGRVPIPNYR TSNRDEELRLLKYLKLQ
Sbjct: 61 LEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ 96

[Close]

BLAST of CSPI07G00010 vs. NCBI nr
Match: gi|571488292|ref|XP_003537885.2| (PREDICTED: protein RADIALIS-like 4 [Glycine max])

HSP 1 Score: 149.4 bits (376), Expect = 3.1e-33
Identity = 77/99 (77.78%), Postives = 86/99 (86.87%), Query Frame = 1


Query: 1  MASSSL-KQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEI 60
          MASSSL KQ+  +++WTPKQNKLFEKALA YDKDTPERWQN+A AVGGKSADEV+RHYEI
Sbjct: 1  MASSSLSKQKASDSSWTPKQNKLFEKALAKYDKDTPERWQNVAKAVGGKSADEVKRHYEI 60

Query: 61 LLEDLRRIESGRVPIPNYRRT---SNRDEELRLLKYLKL 96
          LLEDLR IESGRVP+P Y+ T   +N DEE RLLKYLKL
Sbjct: 61 LLEDLRHIESGRVPLPKYKSTGSSTNVDEEERLLKYLKL 99

[Close]

BLAST of CSPI07G00010 vs. NCBI nr
Match: gi|593142826|ref|XP_007131828.1| (hypothetical protein PHAVU_011G044900g [Phaseolus vulgaris])

HSP 1 Score: 145.6 bits (366), Expect = 4.5e-32
Identity = 73/99 (73.74%), Postives = 85/99 (85.86%), Query Frame = 1


Query: 1  MASSSLKQQRP-ETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEI 60
          MASSS+ +Q+P +++WTPKQNKLFEKALA YDKDTP+RWQN+ATAVG KS DEV+RHYEI
Sbjct: 1  MASSSISKQKPSDSSWTPKQNKLFEKALAKYDKDTPDRWQNVATAVGDKSPDEVKRHYEI 60

Query: 61 LLEDLRRIESGRVPIPNYRRT---SNRDEELRLLKYLKL 96
          LLEDLR IESG VP+P YR T   +N D+E RLLKYLKL
Sbjct: 61 LLEDLRHIESGHVPLPKYRSTGSSTNVDDEERLLKYLKL 99

[Close]

BLAST of CSPI07G00010 vs. NCBI nr
Match: gi|356544482|ref|XP_003540679.1| (PREDICTED: protein RADIALIS-like 4 [Glycine max])

HSP 1 Score: 144.8 bits (364), Expect = 7.8e-32
Identity = 74/99 (74.75%), Postives = 85/99 (85.86%), Query Frame = 1


Query: 1  MASSSL-KQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEI 60
          MASSSL KQ+  +++WTPKQNKLFEKALA YDKDTP+RWQN+A AVGGKSADEV+RHYEI
Sbjct: 1  MASSSLSKQKASDSSWTPKQNKLFEKALAKYDKDTPDRWQNVAKAVGGKSADEVKRHYEI 60

Query: 61 LLEDLRRIESGRVPIPNYRRT---SNRDEELRLLKYLKL 96
          LLEDLR IESG VP+P Y+ T   +N +EE RLLKYLKL
Sbjct: 61 LLEDLRHIESGHVPLPKYKSTGSSTNVEEEERLLKYLKL 99

The following BLAST results are available for this feature:

BLAST of CSPI07G00010 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RADL5_ARATH	1.3e-23	54.37	Protein RADIALIS-like 5 OS=Arabidopsis thaliana GN=RL5 PE=3 SV=1	[more]
RADL6_ARATH	5.0e-23	55.00	Protein RADIALIS-like 6 OS=Arabidopsis thaliana GN=RL6 PE=2 SV=1	[more]
RADL3_ARATH	5.0e-23	60.98	Protein RADIALIS-like 3 OS=Arabidopsis thaliana GN=RL3 PE=2 SV=1	[more]
RADL1_ARATH	1.9e-22	52.48	Protein RADIALIS-like 1 OS=Arabidopsis thaliana GN=RL1 PE=2 SV=1	[more]
RAD_ANTMA	4.7e-21	54.22	Transcription factor RADIALIS OS=Antirrhinum majus GN=RAD PE=1 SV=1	[more]

BLAST of CSPI07G00010 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K2A2_CUCSA	5.9e-47	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G000020 PE=4 SV=1	[more]
I1LJC8_SOYBN	2.2e-33	77.78	Uncharacterized protein OS=Glycine max GN=GLYMA_11G117200 PE=4 SV=2	[more]
A0A0B2RZB1_GLYSO	2.2e-33	77.78	DnaJ like subfamily C member 2 OS=Glycine soja GN=glysoja_020526 PE=4 SV=1	[more]
V7AE35_PHAVU	3.2e-32	73.74	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G044900g PE=4 SV=1	[more]
K7LSY9_SOYBN	5.4e-32	74.75	Uncharacterized protein OS=Glycine max GN=GLYMA_12G042900 PE=4 SV=1	[more]

BLAST of CSPI07G00010 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G19510.1	7.5e-25	54.37	RAD-like 5	[more]
AT1G75250.1	8.3e-24	54.55	RAD-like 6	[more]
AT4G39250.1	1.1e-23	52.48	RAD-like 1	[more]
AT2G18328.1	1.0e-21	59.26	RAD-like 4	[more]
AT2G21650.1	1.7e-21	48.54	Homeodomain-like superfamily protein	[more]

BLAST of CSPI07G00010 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449466753\|ref\|XP_004151090.1\|	8.5e-47	100.00	PREDICTED: protein RADIALIS-like 3 [Cucumis sativus]	[more]
gi\|659092344\|ref\|XP_008447023.1\|	1.6e-45	97.92	PREDICTED: protein RADIALIS-like 3 [Cucumis melo]	[more]
gi\|571488292\|ref\|XP_003537885.2\|	3.1e-33	77.78	PREDICTED: protein RADIALIS-like 4 [Glycine max]	[more]
gi\|593142826\|ref\|XP_007131828.1\|	4.5e-32	73.74	hypothetical protein PHAVU_011G044900g [Phaseolus vulgaris]	[more]
gi\|356544482\|ref\|XP_003540679.1\|	7.8e-32	74.75	PREDICTED: protein RADIALIS-like 4 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001005	SANT/Myb
IPR009057	Homeobox-like_sf
IPR017877	Myb-like_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI07G00010.1	CSPI07G00010.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 14..57 score: 6.
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 11..63 score: 2.
IPR009057	Homeodomain-like	GENE3D	G3DSA:1.10.10.60		coord: 13..67 score: 1.
IPR009057	Homeodomain-like	unknown	SSF46689	Homeodomain-like	coord: 13..69 score: 3.12
IPR017877	Myb-like domain	PROFILE	PS50090	MYB_LIKE	coord: 7..61 score: 6
None	No IPR available	PANTHER	PTHR24078	DNAJ HOMOLOG SUBFAMILY C MEMBER	coord: 15..88 score: 1.5
None	No IPR available	PANTHER	PTHR24078:SF177	PROTEIN DNJ-23-RELATED	coord: 15..88 score: 1.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI07G00010	Cla015915	Watermelon (97103) v1	cpiwmB622
CSPI07G00010	Csa7G000020	Cucumber (Chinese Long) v2	cpicuB354
CSPI07G00010	MELO3C012498	Melon (DHL92) v3.5.1	cpimeB539
CSPI07G00010	ClCG02G004900	Watermelon (Charleston Gray)	cpiwcgB575
CSPI07G00010	Lsi11G011070	Bottle gourd (USVL1VR-Ls)	cpilsiB506
CSPI07G00010	Lsi10G003670	Bottle gourd (USVL1VR-Ls)	cpilsiB497
CSPI07G00010	MELO3C012498.2	Melon (DHL92) v3.6.1	cpimedB524
CSPI07G00010	CsaV3_7G000030	Cucumber (Chinese Long) v3	cpicucB415
CSPI07G00010	Cla97C02G031860	Watermelon (97103) v2	cpiwmbB553
CSPI07G00010	Bhi10G001619	Wax gourd	cpiwgoB693
CSPI07G00010	Bhi05G001106	Wax gourd	cpiwgoB679
CSPI07G00010	Cucsa.377640	Cucumber (Gy14) v1	cgycpiB557
CSPI07G00010	CmoCh11G011180	Cucurbita moschata (Rifu)	cmocpiB138
CSPI07G00010	CmoCh19G006880	Cucurbita moschata (Rifu)	cmocpiB524
CSPI07G00010	Cp4.1LG04g00950	Cucurbita pepo (Zucchini)	cpecpiB698
CSPI07G00010	Cp4.1LG15g05510	Cucurbita pepo (Zucchini)	cpecpiB259
CSPI07G00010	Cp4.1LG07g04060	Cucurbita pepo (Zucchini)	cpecpiB850
CSPI07G00010	CsGy7G000030	Cucumber (Gy14) v2	cgybcpiB332
CSPI07G00010	Carg19406	Silver-seed gourd	carcpiB0348
CSPI07G00010	Carg24681	Silver-seed gourd	carcpiB0201
CSPI07G00010	Carg04049	Silver-seed gourd	carcpiB1020

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None