CsaV3_7G000030 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_7G000030
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Protein RADIALIS-like
Location	chr7 : 89452 .. 90531 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CGTTCTTTTCACCTTTCAAAATAATACTTCTTTTTTAGTCCTTTCTTTTTTCTCTAACCCTTTAATTATCATTACCTTTTATTTTCCCTTCACTTCAAACCCTTTTAAGGCTTCCTTTTTATTTTGTCAATGGCTTCCATGACTGCTCATGGACCAAGCACTACATGGACTATAAACCAAAACAAAGCATTTGAGAAAGCTTTGGCAGTTTATGATAAAGACACACCTGAGAGATGGCTGAATGTTGCGAAGGCCATTGGTGGGAAAACTGAAGAAGAAGTGAAAAGCCATTATCAACTTCTTGTGGAGGATGTTAAGCATATTGAGTCTGGTGAAATTCCTTTTCCTTATCGAAGATCTACGCGATCAAGTCATTAAGCATTGATGGAACAAGGTAATATACATTGTTAGATCACTCCTGAACTCAATTTTTTTTTATAAAACAAAACGATAAATATAAAAATAGAATTGAATATGAAAGTATAAAGGTGATGGTTTAAGATAAATTTAGCCTTTTGGAGTTAAATATTAATATTGAGTATGTTGTGAGGTTCCTTTCCCATATCCAAGCTCAAGATGATTGAGAAATAATATATGTATGGAAAGAGACGAAGTTGGGGTATACCAATTGGTCAATATTTAGTTAAAATTTGGGTTGGTTTGCATTAGTTGTATTTTCGAGAGCTTAAAAAGTGCTACATTCTAGAAAGTAATTCCATGCAAGTCCATAATTACGCTTTTATGGTATTATGCTTTGAAATTCTCTCTTTCTAATGTATTTTTCTCTCTAGAACGACGTTTTGACTTTATGATGTAAAAAGTTTGAACTTGTATATAATAATTATATGTAATATCAAATAATGAAGCATTTTATTGTTCATACACATTTATCATTAATTGATTATAACACAGTATCTCTTATATTTTCTTTGTTCTTACCAGGAAGATTGATTGAGCCAGCTCCTTCAGTGTTTGAAGAATAGAAGAAGCAAAAAGCATATTATGTTTGTCTTTTTGTGCCAATTTAAAGTGTAACTGTAATTTTTTTTAATGGAATAAATGATTATTTGCTTGCTGTTT

mRNA sequence

ATGGCTTCCATGACTGCTCATGGACCAAGCACTACATGGACTATAAACCAAAACAAAGCATTTGAGAAAGCTTTGGCAGTTTATGATAAAGACACACCTGAGAGATGGCTGAATGTTGCGAAGGCCATTGGTGGGAAAACTGAAGAAGAAGTGAAAAGCCATTATCAACTTCTTGTGGAGGATGTTAAGCATATTGAGTCTGGTGAAATTCCTTTTCCTTATCGAAGATCTACGCGATCAAGTCATTAA

Coding sequence (CDS)

ATGGCTTCCATGACTGCTCATGGACCAAGCACTACATGGACTATAAACCAAAACAAAGCATTTGAGAAAGCTTTGGCAGTTTATGATAAAGACACACCTGAGAGATGGCTGAATGTTGCGAAGGCCATTGGTGGGAAAACTGAAGAAGAAGTGAAAAGCCATTATCAACTTCTTGTGGAGGATGTTAAGCATATTGAGTCTGGTGAAATTCCTTTTCCTTATCGAAGATCTACGCGATCAAGTCATTAA

Protein sequence

MASMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVEDVKHIESGEIPFPYRRSTRSSH

Homology

[Close]

BLAST of CsaV3_7G000030 vs. NCBI nr
Match: KGN44078.1 (hypothetical protein Csa_7G169590 [Cucumis sativus])

HSP 1 Score: 143.3 bits (360), Expect = 3.8e-31
Identity = 69/73 (94.52%), Postives = 70/73 (95.89%), Query Frame = 0


Query: 1  MASMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVE 60
          MASMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVE
Sbjct: 1  MASMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVE 60

Query: 61 DVKHIESGEIPFP 74
          DVKHIESG +  P
Sbjct: 61 DVKHIESGRLIEP 73

[Close]

BLAST of CsaV3_7G000030 vs. NCBI nr
Match: XP_011658943.1 (PREDICTED: protein RADIALIS-like 1 [Cucumis sativus] >KGN44073.1 hypothetical protein Csa_7G168060 [Cucumis sativus])

HSP 1 Score: 141.7 bits (356), Expect = 1.1e-30
Identity = 68/81 (83.95%), Postives = 75/81 (92.59%), Query Frame = 0


Query: 1  MASMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVE 60
          MASM+AHG S+ WT  +NKAFEKALA+YDKDTPERWLNVAKAIGGKTEEEVK HYQLL+E
Sbjct: 1  MASMSAHG-SSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLE 60

Query: 61 DVKHIESGEIPFPYRRSTRSS 82
          DV HIESG+IPFPYR+STRSS
Sbjct: 61 DVNHIESGQIPFPYRKSTRSS 80

[Close]

BLAST of CsaV3_7G000030 vs. NCBI nr
Match: XP_008447026.1 (PREDICTED: protein RADIALIS-like 1 [Cucumis melo])

HSP 1 Score: 139.8 bits (351), Expect = 4.1e-30
Identity = 67/81 (82.72%), Postives = 74/81 (91.36%), Query Frame = 0


Query: 1  MASMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVE 60
          MASM+AHG ST WT  +NKAFEKALA+YDKDTPERWLNVAKAIGGKTEE+VK HYQLL+E
Sbjct: 1  MASMSAHG-STQWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLE 60

Query: 61 DVKHIESGEIPFPYRRSTRSS 82
          DV HIE+G+IPFPYR STRSS
Sbjct: 61 DVNHIENGQIPFPYRNSTRSS 80

[Close]

BLAST of CsaV3_7G000030 vs. NCBI nr
Match: XP_022952074.1 (protein RADIALIS-like 1 [Cucurbita moschata] >XP_023511408.1 protein RADIALIS-like 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 134.8 bits (338), Expect = 1.3e-28
Identity = 63/77 (81.82%), Postives = 70/77 (90.91%), Query Frame = 0


Query: 1  MASMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVE 60
          MASM+AHG + +WT  QNKAFEKALAVYD+DTPERWLNVAKAIGGKTEEEVK HYQLL++
Sbjct: 1  MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLK 60

Query: 61 DVKHIESGEIPFPYRRS 78
          DVK IESGE+PFPY RS
Sbjct: 61 DVKQIESGEVPFPYGRS 77

[Close]

BLAST of CsaV3_7G000030 vs. NCBI nr
Match: XP_008447025.1 (PREDICTED: protein RADIALIS-like 1 [Cucumis melo])

HSP 1 Score: 134.0 bits (336), Expect = 2.3e-28
Identity = 64/77 (83.12%), Postives = 70/77 (90.91%), Query Frame = 0


Query: 1  MASMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVE 60
          MASM+AHG S  WT  QNKAFEKALA+YDKDTP+RWLNVAKAIGGKTEEEVK HYQLL+E
Sbjct: 1  MASMSAHG-SGVWTAKQNKAFEKALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLE 60

Query: 61 DVKHIESGEIPFPYRRS 78
          DVKHIESG++PFPYR S
Sbjct: 61 DVKHIESGKVPFPYRTS 76

[Close]

BLAST of CsaV3_7G000030 vs. TAIR10
Match: AT2G21650.1 (Homeodomain-like superfamily protein)

HSP 1 Score: 103.2 bits (256), Expect = 7.8e-23
Identity = 48/81 (59.26%), Postives = 66/81 (81.48%), Query Frame = 0


Query: 3  SMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVEDV 62
          SM+++G S +WT+ QNKAFE+ALAVYD+DTP+RW NVA+A+GGKT EE K  Y LLV D+
Sbjct: 5  SMSSYG-SGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDI 64

Query: 63 KHIESGEIPFP-YRRSTRSSH 83
          + IE+G +PFP Y+ +T +S+
Sbjct: 65 ESIENGHVPFPDYKTTTGNSN 84

[Close]

BLAST of CsaV3_7G000030 vs. TAIR10
Match: AT4G39250.1 (RAD-like 1)

HSP 1 Score: 101.3 bits (251), Expect = 3.0e-22
Identity = 49/79 (62.03%), Postives = 60/79 (75.95%), Query Frame = 0


Query: 1  MASMTAHGPST-TWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLV 60
          MAS +    S+ +WT  QNKAFE+ALA YD+DTP RW NVAK +GGKT EEVK HY+LLV
Sbjct: 1  MASSSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLV 60

Query: 61 EDVKHIESGEIPFP-YRRS 78
          +D+  IE+G +PFP YR S
Sbjct: 61 QDINSIENGHVPFPNYRTS 79

[Close]

BLAST of CsaV3_7G000030 vs. TAIR10
Match: AT1G75250.1 (RAD-like 6)

HSP 1 Score: 100.1 bits (248), Expect = 6.6e-22
Identity = 44/69 (63.77%), Postives = 56/69 (81.16%), Query Frame = 0


Query: 13 WTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVEDVKHIESGEIPF 72
          WT +QNK FE+ALAVYDKDTP+RW NVAKA+GGKT EEVK HY +LVED+ +IE+G +P 
Sbjct: 12 WTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLINIETGRVPL 71

Query: 73 PYRRSTRSS 82
          P  ++  S+
Sbjct: 72 PNYKTFESN 80

[Close]

BLAST of CsaV3_7G000030 vs. TAIR10
Match: AT1G19510.1 (RAD-like 5)

HSP 1 Score: 93.2 bits (230), Expect = 8.1e-20
Identity = 41/64 (64.06%), Postives = 51/64 (79.69%), Query Frame = 0


Query: 10 STTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVEDVKHIESGE 69
          S++WT  QNK FE+ALAVYDKDTP+RW NVAKA+G K+ EEVK HY +LVED+ +IE   
Sbjct: 9  SSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVEDLMNIEQDL 68

Query: 70 IPFP 74
          +P P
Sbjct: 69 VPLP 72

[Close]

BLAST of CsaV3_7G000030 vs. TAIR10
Match: AT2G18328.1 (RAD-like 4)

HSP 1 Score: 87.8 bits (216), Expect = 3.4e-18
Identity = 38/69 (55.07%), Postives = 52/69 (75.36%), Query Frame = 0


Query: 10 STTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVEDVKHIESGE 69
          +++WT  ++K FE ALA +DKDTP+RW  +A+A+GGK+ EEVK HY+LL+ DV  IESG 
Sbjct: 8  TSSWTAREDKQFEMALAKFDKDTPDRWQKIARAVGGKSTEEVKRHYELLLRDVNDIESGR 67

Query: 70 IPFPYRRST 79
           P P  R+T
Sbjct: 68 YPQPRYRNT 76

[Close]

BLAST of CsaV3_7G000030 vs. Swiss-Prot
Match: sp|Q58FS3|RAD_ANTMA (Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.3e-22
Identity = 45/74 (60.81%), Postives = 60/74 (81.08%), Query Frame = 0


Query: 5  TAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVEDVKH 64
          +  G    W+  +NKAFE+ALAVYDKDTP+RW NVA+A+ G+T EEVK HY++LVED+K+
Sbjct: 3  STRGSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKY 62

Query: 65 IESGEIPFPYRRST 79
          IESG++PFP  R+T
Sbjct: 63 IESGKVPFPNYRTT 76

[Close]

BLAST of CsaV3_7G000030 vs. Swiss-Prot
Match: sp|Q9SIJ5|RADL2_ARATH (Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.4e-21
Identity = 48/81 (59.26%), Postives = 66/81 (81.48%), Query Frame = 0


Query: 3  SMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVEDV 62
          SM+++G S +WT+ QNKAFE+ALAVYD+DTP+RW NVA+A+GGKT EE K  Y LLV D+
Sbjct: 5  SMSSYG-SGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDI 64

Query: 63 KHIESGEIPFP-YRRSTRSSH 83
          + IE+G +PFP Y+ +T +S+
Sbjct: 65 ESIENGHVPFPDYKTTTGNSN 84

[Close]

BLAST of CsaV3_7G000030 vs. Swiss-Prot
Match: sp|F4JVB8|RADL1_ARATH (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 5.4e-21
Identity = 49/79 (62.03%), Postives = 60/79 (75.95%), Query Frame = 0


Query: 1  MASMTAHGPST-TWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLV 60
          MAS +    S+ +WT  QNKAFE+ALA YD+DTP RW NVAK +GGKT EEVK HY+LLV
Sbjct: 1  MASSSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLV 60

Query: 61 EDVKHIESGEIPFP-YRRS 78
          +D+  IE+G +PFP YR S
Sbjct: 61 QDINSIENGHVPFPNYRTS 79

[Close]

BLAST of CsaV3_7G000030 vs. Swiss-Prot
Match: sp|Q1A173|RADL6_ARATH (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.2e-20
Identity = 44/69 (63.77%), Postives = 56/69 (81.16%), Query Frame = 0


Query: 13 WTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVEDVKHIESGEIPF 72
          WT +QNK FE+ALAVYDKDTP+RW NVAKA+GGKT EEVK HY +LVED+ +IE+G +P 
Sbjct: 12 WTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLINIETGRVPL 71

Query: 73 PYRRSTRSS 82
          P  ++  S+
Sbjct: 72 PNYKTFESN 80

[Close]

BLAST of CsaV3_7G000030 vs. Swiss-Prot
Match: sp|Q6NNN0|RADL3_ARATH (Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.7e-19
Identity = 42/73 (57.53%), Postives = 55/73 (75.34%), Query Frame = 0


Query: 10 STTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVEDVKHIESGE 69
          S +WT  +NK FE+ALA YD+DTP+RW NVA+A+GGK+ EEV+ HY+LL+ DV  IESG 
Sbjct: 9  SASWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELLIRDVNDIESGR 68

Query: 70 IPFPYRRSTRSSH 83
           P P  RS  ++H
Sbjct: 69 YPHPNYRSNGNNH 81

[Close]

BLAST of CsaV3_7G000030 vs. TrEMBL
Match: tr|A0A0A0K3K5|A0A0A0K3K5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G169590 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 2.5e-31
Identity = 69/73 (94.52%), Postives = 70/73 (95.89%), Query Frame = 0


Query: 1  MASMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVE 60
          MASMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVE
Sbjct: 1  MASMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVE 60

Query: 61 DVKHIESGEIPFP 74
          DVKHIESG +  P
Sbjct: 61 DVKHIESGRLIEP 73

[Close]

BLAST of CsaV3_7G000030 vs. TrEMBL
Match: tr|A0A0A0K3K0|A0A0A0K3K0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G168060 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 7.2e-31
Identity = 68/81 (83.95%), Postives = 75/81 (92.59%), Query Frame = 0


Query: 1  MASMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVE 60
          MASM+AHG S+ WT  +NKAFEKALA+YDKDTPERWLNVAKAIGGKTEEEVK HYQLL+E
Sbjct: 1  MASMSAHG-SSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLE 60

Query: 61 DVKHIESGEIPFPYRRSTRSS 82
          DV HIESG+IPFPYR+STRSS
Sbjct: 61 DVNHIESGQIPFPYRKSTRSS 80

[Close]

BLAST of CsaV3_7G000030 vs. TrEMBL
Match: tr|A0A1S3BGF0|A0A1S3BGF0_CUCME (protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489577 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 2.7e-30
Identity = 67/81 (82.72%), Postives = 74/81 (91.36%), Query Frame = 0


Query: 1  MASMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVE 60
          MASM+AHG ST WT  +NKAFEKALA+YDKDTPERWLNVAKAIGGKTEE+VK HYQLL+E
Sbjct: 1  MASMSAHG-STQWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLE 60

Query: 61 DVKHIESGEIPFPYRRSTRSS 82
          DV HIE+G+IPFPYR STRSS
Sbjct: 61 DVNHIENGQIPFPYRNSTRSS 80

[Close]

BLAST of CsaV3_7G000030 vs. TrEMBL
Match: tr|A0A1S3BGF6|A0A1S3BGF6_CUCME (protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489576 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.5e-28
Identity = 64/77 (83.12%), Postives = 70/77 (90.91%), Query Frame = 0


Query: 1  MASMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVE 60
          MASM+AHG S  WT  QNKAFEKALA+YDKDTP+RWLNVAKAIGGKTEEEVK HYQLL+E
Sbjct: 1  MASMSAHG-SGVWTAKQNKAFEKALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLE 60

Query: 61 DVKHIESGEIPFPYRRS 78
          DVKHIESG++PFPYR S
Sbjct: 61 DVKHIESGKVPFPYRTS 76

[Close]

BLAST of CsaV3_7G000030 vs. TrEMBL
Match: tr|A0A0A0K344|A0A0A0K344_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G169070 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 9.8e-28
Identity = 62/77 (80.52%), Postives = 70/77 (90.91%), Query Frame = 0


Query: 1  MASMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVE 60
          MAS++AHG S  WT  QNKAFE+ALA+YDKDTP+RWLNVAKAIGGKTEEEVK HYQLL+E
Sbjct: 1  MASLSAHG-SGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLE 60

Query: 61 DVKHIESGEIPFPYRRS 78
          DVKHIESG++PFPYR S
Sbjct: 61 DVKHIESGKVPFPYRSS 76

The following BLAST results are available for this feature:

BLAST of CsaV3_7G000030 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44078.1	3.8e-31	94.52	hypothetical protein Csa_7G169590 [Cucumis sativus]	[more]
XP_011658943.1	1.1e-30	83.95	PREDICTED: protein RADIALIS-like 1 [Cucumis sativus] >KGN44073.1 hypothetical pr...	[more]
XP_008447026.1	4.1e-30	82.72	PREDICTED: protein RADIALIS-like 1 [Cucumis melo]	[more]
XP_022952074.1	1.3e-28	81.82	protein RADIALIS-like 1 [Cucurbita moschata] >XP_023511408.1 protein RADIALIS-li...	[more]
XP_008447025.1	2.3e-28	83.12	PREDICTED: protein RADIALIS-like 1 [Cucumis melo]	[more]

BLAST of CsaV3_7G000030 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G21650.1	7.8e-23	59.26	Homeodomain-like superfamily protein	[more]
AT4G39250.1	3.0e-22	62.03	RAD-like 1	[more]
AT1G75250.1	6.6e-22	63.77	RAD-like 6	[more]
AT1G19510.1	8.1e-20	64.06	RAD-like 5	[more]
AT2G18328.1	3.4e-18	55.07	RAD-like 4	[more]

BLAST of CsaV3_7G000030 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q58FS3\|RAD_ANTMA	1.3e-22	60.81	Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1	[more]
sp\|Q9SIJ5\|RADL2_ARATH	1.4e-21	59.26	Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1	[more]
sp\|F4JVB8\|RADL1_ARATH	5.4e-21	62.03	Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1	[more]
sp\|Q1A173\|RADL6_ARATH	1.2e-20	63.77	Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1	[more]
sp\|Q6NNN0\|RADL3_ARATH	1.7e-19	57.53	Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1	[more]

BLAST of CsaV3_7G000030 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K3K5\|A0A0A0K3K5_CUCSA	2.5e-31	94.52	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G169590 PE=4 SV=1	[more]
tr\|A0A0A0K3K0\|A0A0A0K3K0_CUCSA	7.2e-31	83.95	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G168060 PE=4 SV=1	[more]
tr\|A0A1S3BGF0\|A0A1S3BGF0_CUCME	2.7e-30	82.72	protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489577 PE=4 SV=1	[more]
tr\|A0A1S3BGF6\|A0A1S3BGF6_CUCME	1.5e-28	83.12	protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489576 PE=4 SV=1	[more]
tr\|A0A0A0K344\|A0A0A0K344_CUCSA	9.8e-28	80.52	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G169070 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR009057	Homeobox-like_sf
IPR001005	SANT/Myb

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G000030.1	CsaV3_7G000030.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 9..61 e-value: 4.2E-4 score: 29.6
IPR001005	SANT/Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 12..57 e-value: 6.4E-6 score: 26.1
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 19..59 e-value: 1.35834E-4 score: 34.0882
None	No IPR available	GENE3D	G3DSA:1.10.10.60		coord: 5..72 e-value: 6.6E-21 score: 75.9
None	No IPR available	PANTHER	PTHR43952	FAMILY NOT NAMED	coord: 1..81
None	No IPR available	PANTHER	PTHR43952:SF14	PROTEIN RADIALIS-LIKE 1-RELATED	coord: 1..81
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	SSF46689	Homeodomain-like	coord: 11..67

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_7G000030	CSPI07G00010	Wild cucumber (PI 183967)	cpicucB415
CsaV3_7G000030	ClCG02G004900	Watermelon (Charleston Gray)	cucwcgB571

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_7G000030	Cucurbita maxima (Rimu)	cmacucB0638
CsaV3_7G000030	Cucurbita maxima (Rimu)	cmacucB0689
CsaV3_7G000030	Cucurbita maxima (Rimu)	cmacucB0769
CsaV3_7G000030	Cucurbita maxima (Rimu)	cmacucB0958
CsaV3_7G000030	Cucurbita moschata (Rifu)	cmocucB0161
CsaV3_7G000030	Cucurbita moschata (Rifu)	cmocucB0622
CsaV3_7G000030	Cucurbita moschata (Rifu)	cmocucB0674
CsaV3_7G000030	Cucurbita moschata (Rifu)	cmocucB0757
CsaV3_7G000030	Cucurbita pepo (Zucchini)	cpecucB0139
CsaV3_7G000030	Cucurbita pepo (Zucchini)	cpecucB0322
CsaV3_7G000030	Cucurbita pepo (Zucchini)	cpecucB0371
CsaV3_7G000030	Cucurbita pepo (Zucchini)	cpecucB0869
CsaV3_7G000030	Cucurbita pepo (Zucchini)	cpecucB1042
CsaV3_7G000030	Wild cucumber (PI 183967)	cpicucB118
CsaV3_7G000030	Bottle gourd (USVL1VR-Ls)	cuclsiB524
CsaV3_7G000030	Bottle gourd (USVL1VR-Ls)	cuclsiB529
CsaV3_7G000030	Melon (DHL92) v3.5.1	cucmeB530
CsaV3_7G000030	Melon (DHL92) v3.5.1	cucmeB549
CsaV3_7G000030	Melon (DHL92) v3.6.1	cucmedB518
CsaV3_7G000030	Melon (DHL92) v3.6.1	cucmedB537
CsaV3_7G000030	Watermelon (Charleston Gray)	cucwcgB558
CsaV3_7G000030	Watermelon (97103) v1	cucwmB634
CsaV3_7G000030	Watermelon (97103) v1	cucwmB640
CsaV3_7G000030	Watermelon (97103) v2	cucwmbB539
CsaV3_7G000030	Watermelon (97103) v2	cucwmbB549
CsaV3_7G000030	Wax gourd	cucwgoB692
CsaV3_7G000030	Wax gourd	cucwgoB706
CsaV3_7G000030	Cucumber (Chinese Long) v3	cuccucB098
CsaV3_7G000030	Silver-seed gourd	carcucB0201
CsaV3_7G000030	Silver-seed gourd	carcucB0347
CsaV3_7G000030	Cucumber (Gy14) v2	cgybcucB093
CsaV3_7G000030	Cucumber (Gy14) v2	cgybcucB348
CsaV3_7G000030	Cucumber (Gy14) v1	cgycucB141
CsaV3_7G000030	Cucumber (Gy14) v1	cgycucB572
CsaV3_7G000030	Cucurbita maxima (Rimu)	cmacucB0177