Carg24681 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24681
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Protein RADIALIS-like
Location	Cucurbita_argyrosperma_scaffold_218 : 161675 .. 161980 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCAAGCTCTTTGAAGCATCTCCGACCGGAAGCGATGTGGACGACAAAGCAGAACAAGCTGTTTGAGATGGCATTGGCTTTGTACGACAAAGAGACGCCCGAGAGATGGCAGAACGTTGCCAAGGCCGTCAGCGGGAAGTCGGCAGACGAAGTCGAAAGACACTATGAGATACTCTTGGAAGATCTCCAGCGGATTGAGTCGGGGTGTGTTCCTATTCCAAATTATAGAGCTGCCGGAAATGGAGATGAAGAATTGAGGTTAGTGATGAAGATGATCAAAGATATGAAATATGGTTTATAA

mRNA sequence

ATGGCTTCAAGCTCTTTGAAGCATCTCCGACCGGAAGCGATGTGGACGACAAAGCAGAACAAGCTGTTTGAGATGGCATTGGCTTTGTACGACAAAGAGACGCCCGAGAGATGGCAGAACGTTGCCAAGGCCGTCAGCGGGAAGTCGGCAGACGAAGTCGAAAGACACTATGAGATACTCTTGGAAGATCTCCAGCGGATTGAGTCGGGGTGTGTTCCTATTCCAAATTATAGAGCTGCCGGAAATGGAGATGAAGAATTGAGGTTAGTGATGAAGATGATCAAAGATATGAAATATGGTTTATAA

Coding sequence (CDS)

ATGGCTTCAAGCTCTTTGAAGCATCTCCGACCGGAAGCGATGTGGACGACAAAGCAGAACAAGCTGTTTGAGATGGCATTGGCTTTGTACGACAAAGAGACGCCCGAGAGATGGCAGAACGTTGCCAAGGCCGTCAGCGGGAAGTCGGCAGACGAAGTCGAAAGACACTATGAGATACTCTTGGAAGATCTCCAGCGGATTGAGTCGGGGTGTGTTCCTATTCCAAATTATAGAGCTGCCGGAAATGGAGATGAAGAATTGAGGTTAGTGATGAAGATGATCAAAGATATGAAATATGGTTTATAA

Protein sequence

MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEILLEDLQRIESGCVPIPNYRAAGNGDEELRLVMKMIKDMKYGL

Homology

[Close]

BLAST of Carg24681 vs. NCBI nr
Match: XP_022971553.1 (protein RADIALIS-like 3 [Cucurbita maxima])

HSP 1 Score: 184.1 bits (466), Expect = 2.3e-43
Identity = 89/93 (95.70%), Postives = 91/93 (97.85%), Query Frame = 0


Query: 1  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEIL 60
          MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEIL
Sbjct: 1  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEIL 60

Query: 61 LEDLQRIESGCVPIPNYRAAGNGDEELRLVMKM 94
          LEDLQRIESGCVPIPNYRAAGNGDEELRL+  +
Sbjct: 61 LEDLQRIESGCVPIPNYRAAGNGDEELRLLKSL 93

[Close]

BLAST of Carg24681 vs. NCBI nr
Match: XP_022933513.1 (protein RADIALIS-like 3 [Cucurbita moschata])

HSP 1 Score: 182.6 bits (462), Expect = 6.8e-43
Identity = 88/93 (94.62%), Postives = 91/93 (97.85%), Query Frame = 0


Query: 1  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEIL 60
          MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSA+EVERHYEIL
Sbjct: 1  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEIL 60

Query: 61 LEDLQRIESGCVPIPNYRAAGNGDEELRLVMKM 94
          LEDLQRIESGCVPIPNYRAAGNGDEELRL+  +
Sbjct: 61 LEDLQRIESGCVPIPNYRAAGNGDEELRLLKSL 93

[Close]

BLAST of Carg24681 vs. NCBI nr
Match: XP_023531644.1 (protein RADIALIS-like 3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 181.8 bits (460), Expect = 1.2e-42
Identity = 87/93 (93.55%), Postives = 90/93 (96.77%), Query Frame = 0


Query: 1  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEIL 60
          MASSSLKHLRPEAMWT KQNKLFEMALALYDKETPERWQNVAKA+SGKSADEVERHYEIL
Sbjct: 1  MASSSLKHLRPEAMWTAKQNKLFEMALALYDKETPERWQNVAKAISGKSADEVERHYEIL 60

Query: 61 LEDLQRIESGCVPIPNYRAAGNGDEELRLVMKM 94
          LEDLQRIESGCVPIPNYRAAGNGDEELRL+  +
Sbjct: 61 LEDLQRIESGCVPIPNYRAAGNGDEELRLLKSL 93

[Close]

BLAST of Carg24681 vs. NCBI nr
Match: XP_023554816.1 (protein RADIALIS-like 3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 153.3 bits (386), Expect = 4.4e-34
Identity = 75/90 (83.33%), Postives = 79/90 (87.78%), Query Frame = 0


Query: 1  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEIL 60
          MASSSLK  RPEA WT KQNKLFE ALALYDKETPERW N+A AV GKSADEV+RHYEIL
Sbjct: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60

Query: 61 LEDLQRIESGCVPIPNYRAAGNGDEELRLV 91
          LEDL+RIESG VPIPNYR A NGDEELRL+
Sbjct: 61 LEDLRRIESGRVPIPNYRGAHNGDEELRLL 90

[Close]

BLAST of Carg24681 vs. NCBI nr
Match: XP_022975322.1 (protein RADIALIS-like 3 [Cucurbita maxima])

HSP 1 Score: 152.5 bits (384), Expect = 7.5e-34
Identity = 75/90 (83.33%), Postives = 78/90 (86.67%), Query Frame = 0


Query: 1  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEIL 60
          MASSSLK  RPEA WT KQNKLFE ALALYDKE PERW N+A AV GKSADEV+RHYEIL
Sbjct: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKEMPERWHNIAMAVGGKSADEVKRHYEIL 60

Query: 61 LEDLQRIESGCVPIPNYRAAGNGDEELRLV 91
          LEDLQRIESG VPIPNYR A NGDEELRL+
Sbjct: 61 LEDLQRIESGRVPIPNYRGAHNGDEELRLL 90

[Close]

BLAST of Carg24681 vs. TAIR10
Match: AT1G19510.1 (RAD-like 5)

HSP 1 Score: 108.2 bits (269), Expect = 3.0e-24
Identity = 55/100 (55.00%), Postives = 71/100 (71.00%), Query Frame = 0


Query: 1  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEIL 60
          MASSS+      + WT+KQNK+FE ALA+YDK+TP+RWQNVAKAV  KSA+EV+RHY+IL
Sbjct: 1  MASSSMS---SSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDIL 60

Query: 61 LEDLQRIESGCVPIPNY-------RAAGNGDEELRLVMKM 94
          +EDL  IE   VP+P Y       ++ G  D +LRL+  M
Sbjct: 61 VEDLMNIEQDLVPLPKYKTVDVGSKSRGIDDFDLRLMKNM 97

[Close]

BLAST of Carg24681 vs. TAIR10
Match: AT4G39250.1 (RAD-like 1)

HSP 1 Score: 105.1 bits (261), Expect = 2.5e-23
Identity = 48/81 (59.26%), Postives = 61/81 (75.31%), Query Frame = 0


Query: 1  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEIL 60
          MASSS+   +    WT KQNK FE ALA YD++TP RWQNVAK V GK+ +EV+RHYE+L
Sbjct: 1  MASSSMSS-QSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELL 60

Query: 61 LEDLQRIESGCVPIPNYRAAG 82
          ++D+  IE+G VP PNYR +G
Sbjct: 61 VQDINSIENGHVPFPNYRTSG 80

[Close]

BLAST of Carg24681 vs. TAIR10
Match: AT1G75250.1 (RAD-like 6)

HSP 1 Score: 103.2 bits (256), Expect = 9.5e-23
Identity = 48/78 (61.54%), Postives = 62/78 (79.49%), Query Frame = 0


Query: 1  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEIL 60
          MAS+S   + P   WT  QNK+FE ALA+YDK+TP+RW NVAKAV GK+ +EV+RHY+IL
Sbjct: 1  MASNSRSSISP---WTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDIL 60

Query: 61 LEDLQRIESGCVPIPNYR 79
          +EDL  IE+G VP+PNY+
Sbjct: 61 VEDLINIETGRVPLPNYK 75

[Close]

BLAST of Carg24681 vs. TAIR10
Match: AT2G21650.1 (Homeodomain-like superfamily protein)

HSP 1 Score: 93.2 bits (230), Expect = 9.8e-20
Identity = 47/100 (47.00%), Postives = 67/100 (67.00%), Query Frame = 0


Query: 1  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEIL 60
          MAS S+        WT KQNK FE ALA+YD++TP+RW NVA+AV GK+ +E +R Y++L
Sbjct: 1  MASGSMSSY-GSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLL 60

Query: 61 LEDLQRIESGCVPIPNYR-AAGNGDE-ELRLVMKMIKDMK 99
          + D++ IE+G VP P+Y+   GN +   LR   K ++ MK
Sbjct: 61 VRDIESIENGHVPFPDYKTTTGNSNRGRLRDEEKRMRSMK 99

[Close]

BLAST of Carg24681 vs. TAIR10
Match: AT2G18328.1 (RAD-like 4)

HSP 1 Score: 93.2 bits (230), Expect = 9.8e-20
Identity = 44/78 (56.41%), Postives = 58/78 (74.36%), Query Frame = 0


Query: 1  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEIL 60
          MASSS+      + WT +++K FEMALA +DK+TP+RWQ +A+AV GKS +EV+RHYE+L
Sbjct: 1  MASSSMS----TSSWTAREDKQFEMALAKFDKDTPDRWQKIARAVGGKSTEEVKRHYELL 60

Query: 61 LEDLQRIESGCVPIPNYR 79
          L D+  IESG  P P YR
Sbjct: 61 LRDVNDIESGRYPQPRYR 74

[Close]

BLAST of Carg24681 vs. Swiss-Prot
Match: sp|Q8GW75|RADL5_ARATH (Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 5.3e-23
Identity = 55/100 (55.00%), Postives = 71/100 (71.00%), Query Frame = 0


Query: 1  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEIL 60
          MASSS+      + WT+KQNK+FE ALA+YDK+TP+RWQNVAKAV  KSA+EV+RHY+IL
Sbjct: 1  MASSSMS---SSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDIL 60

Query: 61 LEDLQRIESGCVPIPNY-------RAAGNGDEELRLVMKM 94
          +EDL  IE   VP+P Y       ++ G  D +LRL+  M
Sbjct: 61 VEDLMNIEQDLVPLPKYKTVDVGSKSRGIDDFDLRLMKNM 97

[Close]

BLAST of Carg24681 vs. Swiss-Prot
Match: sp|F4JVB8|RADL1_ARATH (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 4.5e-22
Identity = 48/81 (59.26%), Postives = 61/81 (75.31%), Query Frame = 0


Query: 1  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEIL 60
          MASSS+   +    WT KQNK FE ALA YD++TP RWQNVAK V GK+ +EV+RHYE+L
Sbjct: 1  MASSSMSS-QSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELL 60

Query: 61 LEDLQRIESGCVPIPNYRAAG 82
          ++D+  IE+G VP PNYR +G
Sbjct: 61 VQDINSIENGHVPFPNYRTSG 80

[Close]

BLAST of Carg24681 vs. Swiss-Prot
Match: sp|Q6NNN0|RADL3_ARATH (Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 5.9e-22
Identity = 50/82 (60.98%), Postives = 62/82 (75.61%), Query Frame = 0


Query: 1  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEIL 60
          MAS+S+      A WT K+NKLFE ALA YD++TP+RW NVA+AV GKSA+EV RHYE+L
Sbjct: 1  MASNSMS---SSASWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELL 60

Query: 61 LEDLQRIESGCVPIPNYRAAGN 83
          + D+  IESG  P PNYR+ GN
Sbjct: 61 IRDVNDIESGRYPHPNYRSNGN 79

[Close]

BLAST of Carg24681 vs. Swiss-Prot
Match: sp|Q1A173|RADL6_ARATH (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.7e-21
Identity = 48/78 (61.54%), Postives = 62/78 (79.49%), Query Frame = 0


Query: 1  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEIL 60
          MAS+S   + P   WT  QNK+FE ALA+YDK+TP+RW NVAKAV GK+ +EV+RHY+IL
Sbjct: 1  MASNSRSSISP---WTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDIL 60

Query: 61 LEDLQRIESGCVPIPNYR 79
          +EDL  IE+G VP+PNY+
Sbjct: 61 VEDLINIETGRVPLPNYK 75

[Close]

BLAST of Carg24681 vs. Swiss-Prot
Match: sp|Q58FS3|RAD_ANTMA (Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.9e-20
Identity = 42/67 (62.69%), Postives = 56/67 (83.58%), Query Frame = 0


Query: 15 WTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEILLEDLQRIESGCVPI 74
          W+ K+NK FE ALA+YDK+TP+RW NVA+AV G++ +EV++HYEIL+ED++ IESG VP 
Sbjct: 11 WSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVPF 70

Query: 75 PNYRAAG 82
          PNYR  G
Sbjct: 71 PNYRTTG 77

[Close]

BLAST of Carg24681 vs. TrEMBL
Match: tr|A0A0A0K2A2|A0A0A0K2A2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G000020 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 9.4e-33
Identity = 72/90 (80.00%), Postives = 77/90 (85.56%), Query Frame = 0


Query: 1  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEIL 60
          MASSSLK  RPE  WT KQNKLFE ALALYDK+TPERWQN+A AV GKSADEV+RHYEIL
Sbjct: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60

Query: 61 LEDLQRIESGCVPIPNYRAAGNGDEELRLV 91
          LEDL+RIESG VPIPNYR   N DEELRL+
Sbjct: 61 LEDLRRIESGRVPIPNYRRTSNRDEELRLL 90

[Close]

BLAST of Carg24681 vs. TrEMBL
Match: tr|A0A1S3BHB0|A0A1S3BHB0_CUCME (protein RADIALIS-like 3 OS=Cucumis melo OX=3656 GN=LOC103489572 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 2.1e-32
Identity = 71/90 (78.89%), Postives = 77/90 (85.56%), Query Frame = 0


Query: 1  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEIL 60
          MASSSLK  RPE  WT KQNKLFE ALALYDK+TPERWQN+A AV GKSADEV+RHYEIL
Sbjct: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60

Query: 61 LEDLQRIESGCVPIPNYRAAGNGDEELRLV 91
          LEDL++IESG VPIPNYR   N DEELRL+
Sbjct: 61 LEDLRQIESGRVPIPNYRGTSNRDEELRLL 90

[Close]

BLAST of Carg24681 vs. TrEMBL
Match: tr|A0A061E6U2|A0A061E6U2_THECC (DnaJ subfamily C member 2 OS=Theobroma cacao OX=3641 GN=TCM_006875 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.0e-26
Identity = 63/88 (71.59%), Postives = 72/88 (81.82%), Query Frame = 0


Query: 1  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEIL 60
          MASSSL+  R    WT KQNKLFE ALA YDK+TP+RW NVAKAV GK+A+EV+RHYEIL
Sbjct: 1  MASSSLQS-RDSVSWTAKQNKLFEKALAKYDKDTPDRWHNVAKAVGGKTAEEVKRHYEIL 60

Query: 61 LEDLQRIESGCVPIPNYRAAGNGDEELR 89
          +EDL+ IESG VPIPNYR+ GN DEE R
Sbjct: 61 VEDLKHIESGRVPIPNYRSTGNADEEER 87

[Close]

BLAST of Carg24681 vs. TrEMBL
Match: tr|I1LJC8|I1LJC8_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100798314 PE=4 SV=2)

HSP 1 Score: 125.9 bits (315), Expect = 5.0e-26
Identity = 66/94 (70.21%), Postives = 75/94 (79.79%), Query Frame = 0


Query: 1  MASSSL-KHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEI 60
          MASSSL K    ++ WT KQNKLFE ALA YDK+TPERWQNVAKAV GKSADEV+RHYEI
Sbjct: 1  MASSSLSKQKASDSSWTPKQNKLFEKALAKYDKDTPERWQNVAKAVGGKSADEVKRHYEI 60

Query: 61 LLEDLQRIESGCVPIPNYRAAG---NGDEELRLV 91
          LLEDL+ IESG VP+P Y++ G   N DEE RL+
Sbjct: 61 LLEDLRHIESGRVPLPKYKSTGSSTNVDEEERLL 94

[Close]

BLAST of Carg24681 vs. TrEMBL
Match: tr|A0A1U8ADR1|A0A1U8ADR1_NELNU (protein RADIALIS-like 3 OS=Nelumbo nucifera OX=4432 GN=LOC104601848 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 5.0e-26
Identity = 64/95 (67.37%), Postives = 77/95 (81.05%), Query Frame = 0


Query: 1  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEIL 60
          MASSSL+     + WT KQNKLFE ALALYDK+TP+RWQNVAKAV GKSA+EV+RHYEIL
Sbjct: 1  MASSSLRG-SSSSTWTPKQNKLFEKALALYDKDTPDRWQNVAKAVGGKSAEEVKRHYEIL 60

Query: 61 LEDLQRIESGCVPIPNYRAAGN-----GDEELRLV 91
          +EDL+ IESG VP PNY+++G+     GDEE RL+
Sbjct: 61 IEDLKHIESGKVPFPNYKSSGSSSQGIGDEEQRLL 94

The following BLAST results are available for this feature:

BLAST of Carg24681 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022971553.1	2.3e-43	95.70	protein RADIALIS-like 3 [Cucurbita maxima]	[more]
XP_022933513.1	6.8e-43	94.62	protein RADIALIS-like 3 [Cucurbita moschata]	[more]
XP_023531644.1	1.2e-42	93.55	protein RADIALIS-like 3 [Cucurbita pepo subsp. pepo]	[more]
XP_023554816.1	4.4e-34	83.33	protein RADIALIS-like 3 [Cucurbita pepo subsp. pepo]	[more]
XP_022975322.1	7.5e-34	83.33	protein RADIALIS-like 3 [Cucurbita maxima]	[more]

BLAST of Carg24681 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G19510.1	3.0e-24	55.00	RAD-like 5	[more]
AT4G39250.1	2.5e-23	59.26	RAD-like 1	[more]
AT1G75250.1	9.5e-23	61.54	RAD-like 6	[more]
AT2G21650.1	9.8e-20	47.00	Homeodomain-like superfamily protein	[more]
AT2G18328.1	9.8e-20	56.41	RAD-like 4	[more]

BLAST of Carg24681 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8GW75\|RADL5_ARATH	5.3e-23	55.00	Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1	[more]
sp\|F4JVB8\|RADL1_ARATH	4.5e-22	59.26	Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1	[more]
sp\|Q6NNN0\|RADL3_ARATH	5.9e-22	60.98	Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1	[more]
sp\|Q1A173\|RADL6_ARATH	1.7e-21	61.54	Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1	[more]
sp\|Q58FS3\|RAD_ANTMA	1.9e-20	62.69	Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1	[more]

BLAST of Carg24681 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K2A2\|A0A0A0K2A2_CUCSA	9.4e-33	80.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G000020 PE=4 SV=1	[more]
tr\|A0A1S3BHB0\|A0A1S3BHB0_CUCME	2.1e-32	78.89	protein RADIALIS-like 3 OS=Cucumis melo OX=3656 GN=LOC103489572 PE=4 SV=1	[more]
tr\|A0A061E6U2\|A0A061E6U2_THECC	1.0e-26	71.59	DnaJ subfamily C member 2 OS=Theobroma cacao OX=3641 GN=TCM_006875 PE=4 SV=1	[more]
tr\|I1LJC8\|I1LJC8_SOYBN	5.0e-26	70.21	Uncharacterized protein OS=Glycine max OX=3847 GN=100798314 PE=4 SV=2	[more]
tr\|A0A1U8ADR1\|A0A1U8ADR1_NELNU	5.0e-26	67.37	protein RADIALIS-like 3 OS=Nelumbo nucifera OX=4432 GN=LOC104601848 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR009057	Homeobox-like_sf
IPR001005	SANT/Myb

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24681-RA	Carg24681-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:1.10.10.60		coord: 10..74 e-value: 6.8E-19 score: 69.5
None	No IPR available	PANTHER	PTHR43952:SF12	PROTEIN RADIALIS-LIKE 4	coord: 13..83
None	No IPR available	PANTHER	PTHR43952	FAMILY NOT NAMED	coord: 13..83
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 15..61 e-value: 0.00126486 score: 31.777
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	SSF46689	Homeodomain-like	coord: 15..68

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg24681	Cla015915	Watermelon (97103) v1	carwmB0165
Carg24681	Csa7G000020	Cucumber (Chinese Long) v2	carcuB0194
Carg24681	MELO3C012498	Melon (DHL92) v3.5.1	carmeB0180
Carg24681	ClCG02G004900	Watermelon (Charleston Gray)	carwcgB0167
Carg24681	CSPI07G00010	Wild cucumber (PI 183967)	carcpiB0201
Carg24681	Cucsa.377690	Cucumber (Gy14) v1	carcgyB0215
Carg24681	CmoCh11G011180	Cucurbita moschata (Rifu)	carcmoB0245
Carg24681	CmoCh19G006880	Cucurbita moschata (Rifu)	carcmoB0246
Carg24681	Lsi11G011110	Bottle gourd (USVL1VR-Ls)	carlsiB157
Carg24681	Cp4.1LG15g05510	Cucurbita pepo (Zucchini)	carcpeB0252
Carg24681	Cp4.1LG04g00950	Cucurbita pepo (Zucchini)	carcpeB0254
Carg24681	CsGy7G000080	Cucumber (Gy14) v2	carcgybB0188
Carg24681	MELO3C012498.2	Melon (DHL92) v3.6.1	carmedB0184
Carg24681	CsaV3_7G000070	Cucumber (Chinese Long) v3	carcucB0201
Carg24681	Cla97C02G031860	Watermelon (97103) v2	carwmbB0180
Carg24681	Bhi05G001105	Wax gourd	carwgoB0225

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg24681	Carg19405	Silver-seed gourd	carcarB212

The following block(s) are covering this gene:


Gene	Organism	Block
Carg24681	Cucurbita maxima (Rimu)	carcmaB0237
Carg24681	Cucurbita maxima (Rimu)	carcmaB0238
Carg24681	Cucurbita maxima (Rimu)	carcmaB0239
Carg24681	Cucurbita moschata (Rifu)	carcmoB0247
Carg24681	Cucurbita pepo (Zucchini)	carcpeB0253
Carg24681	Cucurbita pepo (Zucchini)	carcpeB0255