CmoCh19G006880 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh19G006880
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	(DNA binding protein) (MYB-related transcription factor)
Location	Cmo_Chr19 : 7277180 .. 7277781 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATACACATATAAATCACTCTCATTTCTCCATTGGATCTCAACCAAAACAACCAAAACCCCATCTCCAAATTTTTCTTCTTTTCTTCGCCAATGGCTTCGAGCTCTTTAAAACAACAACGTCCCGAGGCGACATGGACAGCCAAGCAAAACAAGCTGTTTGAGAAGGCGTTGGCTTTGTACGACAAAGAGACGCCTGAGCGATGGCACAATATCGCCATGGCAGTCGGTGGGAAGTCGGCCGACGAAGTTAAAAGACATTACGAGATTCTCTTGGAAGATCTCCTGCGGATCGAGTCGGGCCGTGTTCCTATTCCAAATTACAGAGGCGTCCACAATGGAGATGAAGAGTTGAGGTTAGTGAAGTTGTTCAAAGATTTTTTTCCCTCTTTATTTTAATTTTTGTCTTGTTTTTTTTTTTTTTTTTATTACCAATTTTGGGTACATGTTTATGTGGTTAATATTGTGATTAGGTTAAGTTTTTTATATGGTTGGTGGATATTTGTGAGACTTTGACTTATTAGAGTATTTTGTTGGTTGAATTTATTGTAATTTATTGGCTAGTTTGTGACCTATTGTCTAATCTAATTTTAAGTAGGTATTAA

mRNA sequence

ATACACATATAAATCACTCTCATTTCTCCATTGGATCTCAACCAAAACAACCAAAACCCCATCTCCAAATTTTTCTTCTTTTCTTCGCCAATGGCTTCGAGCTCTTTAAAACAACAACGTCCCGAGGCGACATGGACAGCCAAGCAAAACAAGCTGTTTGAGAAGGCGTTGGCTTTGTACGACAAAGAGACGCCTGAGCGATGGCACAATATCGCCATGGCAGTCGGTGGGAAGTCGGCCGACGAAGTTAAAAGACATTACGAGATTCTCTTGGAAGATCTCCTGCGGATCGAGTCGGGCCGTGTTCCTATTCCAAATTACAGAGGCGTCCACAATGGAGATGAAGAGTTGAGGTATTAA

Coding sequence (CDS)

ATGGCTTCGAGCTCTTTAAAACAACAACGTCCCGAGGCGACATGGACAGCCAAGCAAAACAAGCTGTTTGAGAAGGCGTTGGCTTTGTACGACAAAGAGACGCCTGAGCGATGGCACAATATCGCCATGGCAGTCGGTGGGAAGTCGGCCGACGAAGTTAAAAGACATTACGAGATTCTCTTGGAAGATCTCCTGCGGATCGAGTCGGGCCGTGTTCCTATTCCAAATTACAGAGGCGTCCACAATGGAGATGAAGAGTTGAGGTATTAA

Homology

[Close]

BLAST of CmoCh19G006880 vs. Swiss-Prot
Match: RADL6_ARATH (Protein RADIALIS-like 6 OS=Arabidopsis thaliana GN=RL6 PE=2 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 3.2e-24
Identity = 50/78 (64.10%), Postives = 65/78 (83.33%), Query Frame = 1


Query: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60
          MAS+S     P   WT  QNK+FE+ALA+YDK+TP+RWHN+A AVGGK+ +EVKRHY+IL
Sbjct: 1  MASNSRSSISP---WTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDIL 60

Query: 61 LEDLLRIESGRVPIPNYR 79
          +EDL+ IE+GRVP+PNY+
Sbjct: 61 VEDLINIETGRVPLPNYK 75

[Close]

BLAST of CmoCh19G006880 vs. Swiss-Prot
Match: RADL3_ARATH (Protein RADIALIS-like 3 OS=Arabidopsis thaliana GN=RL3 PE=2 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.6e-23
Identity = 51/82 (62.20%), Postives = 65/82 (79.27%), Query Frame = 1


Query: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60
          MAS+S+      A+WT K+NKLFE+ALA YD++TP+RWHN+A AVGGKSA+EV+RHYE+L
Sbjct: 1  MASNSMSSS---ASWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELL 60

Query: 61 LEDLLRIESGRVPIPNYRGVHN 83
          + D+  IESGR P PNYR   N
Sbjct: 61 IRDVNDIESGRYPHPNYRSNGN 79

[Close]

BLAST of CmoCh19G006880 vs. Swiss-Prot
Match: RADL5_ARATH (Protein RADIALIS-like 5 OS=Arabidopsis thaliana GN=RL5 PE=3 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 2.7e-23
Identity = 50/85 (58.82%), Postives = 67/85 (78.82%), Query Frame = 1


Query: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60
          MASSS+      ++WT+KQNK+FE+ALA+YDK+TP+RW N+A AVG KSA+EVKRHY+IL
Sbjct: 1  MASSSMSSS---SSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDIL 60

Query: 61 LEDLLRIESGRVPIPNYRGVHNGDE 86
          +EDL+ IE   VP+P Y+ V  G +
Sbjct: 61 VEDLMNIEQDLVPLPKYKTVDVGSK 82

[Close]

BLAST of CmoCh19G006880 vs. Swiss-Prot
Match: RADL1_ARATH (Protein RADIALIS-like 1 OS=Arabidopsis thaliana GN=RL1 PE=2 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.8e-22
Identity = 51/86 (59.30%), Postives = 64/86 (74.42%), Query Frame = 1


Query: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60
          MASSS+  Q    +WTAKQNK FE+ALA YD++TP RW N+A  VGGK+ +EVKRHYE+L
Sbjct: 1  MASSSMSSQS-SGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELL 60

Query: 61 LEDLLRIESGRVPIPNYR---GVHNG 84
          ++D+  IE+G VP PNYR   G  NG
Sbjct: 61 VQDINSIENGHVPFPNYRTSGGCTNG 85

[Close]

BLAST of CmoCh19G006880 vs. Swiss-Prot
Match: RAD_ANTMA (Transcription factor RADIALIS OS=Antirrhinum majus GN=RAD PE=1 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 9.6e-21
Identity = 42/64 (65.62%), Postives = 56/64 (87.50%), Query Frame = 1


Query: 15 WTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEILLEDLLRIESGRVPI 74
          W+AK+NK FE+ALA+YDK+TP+RW N+A AV G++ +EVK+HYEIL+ED+  IESG+VP 
Sbjct: 11 WSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVPF 70

Query: 75 PNYR 79
          PNYR
Sbjct: 71 PNYR 74

[Close]

BLAST of CmoCh19G006880 vs. TrEMBL
Match: A0A0A0K2A2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G000020 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 1.3e-35
Identity = 77/88 (87.50%), Postives = 79/88 (89.77%), Query Frame = 1


Query: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60
          MASSSLKQQRPE TWT KQNKLFEKALALYDK+TPERW NIA AVGGKSADEV+RHYEIL
Sbjct: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60

Query: 61 LEDLLRIESGRVPIPNYRGVHNGDEELR 89
          LEDL RIESGRVPIPNYR   N DEELR
Sbjct: 61 LEDLRRIESGRVPIPNYRRTSNRDEELR 88

[Close]

BLAST of CmoCh19G006880 vs. TrEMBL
Match: A0A061E6U2_THECC (DnaJ subfamily C member 2 OS=Theobroma cacao GN=TCM_006875 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.2e-30
Identity = 68/89 (76.40%), Postives = 75/89 (84.27%), Query Frame = 1


Query: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60
          MASSSL Q R   +WTAKQNKLFEKALA YDK+TP+RWHN+A AVGGK+A+EVKRHYEIL
Sbjct: 1  MASSSL-QSRDSVSWTAKQNKLFEKALAKYDKDTPDRWHNVAKAVGGKTAEEVKRHYEIL 60

Query: 61 LEDLLRIESGRVPIPNYRGVHNGDEELRY 90
          +EDL  IESGRVPIPNYR   N DEE RY
Sbjct: 61 VEDLKHIESGRVPIPNYRSTGNADEEERY 88

[Close]

BLAST of CmoCh19G006880 vs. TrEMBL
Match: A0A151TGA1_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_012369 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 6.3e-27
Identity = 63/91 (69.23%), Postives = 74/91 (81.32%), Query Frame = 1


Query: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60
          MASSSLKQ+  +++WT KQNKLFEKALA YDK+TP+RW N+A AVG KSADEVKRHYEIL
Sbjct: 1  MASSSLKQKACDSSWTPKQNKLFEKALAKYDKDTPDRWQNVAKAVGDKSADEVKRHYEIL 60

Query: 61 LEDLLRIESGRVPIPNYRGVHNG---DEELR 89
          LEDL  IESGRVP+P Y+ + +    DEE R
Sbjct: 61 LEDLRHIESGRVPLPKYKSIGSSSCVDEEER 91

[Close]

BLAST of CmoCh19G006880 vs. TrEMBL
Match: A0A0B2RZB1_GLYSO (DnaJ like subfamily C member 2 OS=Glycine soja GN=glysoja_020526 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 8.2e-27
Identity = 66/92 (71.74%), Postives = 74/92 (80.43%), Query Frame = 1


Query: 1  MASSSL-KQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEI 60
          MASSSL KQ+  +++WT KQNKLFEKALA YDK+TPERW N+A AVGGKSADEVKRHYEI
Sbjct: 1  MASSSLSKQKASDSSWTPKQNKLFEKALAKYDKDTPERWQNVAKAVGGKSADEVKRHYEI 60

Query: 61 LLEDLLRIESGRVPIPNYRGV---HNGDEELR 89
          LLEDL  IESGRVP+P Y+      N DEE R
Sbjct: 61 LLEDLRHIESGRVPLPKYKSTGSSTNVDEEER 92

[Close]

BLAST of CmoCh19G006880 vs. TrEMBL
Match: I1LJC8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_11G117200 PE=4 SV=2)

HSP 1 Score: 127.5 bits (319), Expect = 8.2e-27
Identity = 66/92 (71.74%), Postives = 74/92 (80.43%), Query Frame = 1


Query: 1  MASSSL-KQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEI 60
          MASSSL KQ+  +++WT KQNKLFEKALA YDK+TPERW N+A AVGGKSADEVKRHYEI
Sbjct: 1  MASSSLSKQKASDSSWTPKQNKLFEKALAKYDKDTPERWQNVAKAVGGKSADEVKRHYEI 60

Query: 61 LLEDLLRIESGRVPIPNYRGV---HNGDEELR 89
          LLEDL  IESGRVP+P Y+      N DEE R
Sbjct: 61 LLEDLRHIESGRVPLPKYKSTGSSTNVDEEER 92

[Close]

BLAST of CmoCh19G006880 vs. TAIR10
Match: AT1G75250.1 (AT1G75250.1 RAD-like 6)

HSP 1 Score: 112.1 bits (279), Expect = 1.8e-25
Identity = 50/78 (64.10%), Postives = 65/78 (83.33%), Query Frame = 1


Query: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60
          MAS+S     P   WT  QNK+FE+ALA+YDK+TP+RWHN+A AVGGK+ +EVKRHY+IL
Sbjct: 1  MASNSRSSISP---WTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDIL 60

Query: 61 LEDLLRIESGRVPIPNYR 79
          +EDL+ IE+GRVP+PNY+
Sbjct: 61 VEDLINIETGRVPLPNYK 75

[Close]

BLAST of CmoCh19G006880 vs. TAIR10
Match: AT1G19510.1 (AT1G19510.1 RAD-like 5)

HSP 1 Score: 109.0 bits (271), Expect = 1.5e-24
Identity = 50/85 (58.82%), Postives = 67/85 (78.82%), Query Frame = 1


Query: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60
          MASSS+      ++WT+KQNK+FE+ALA+YDK+TP+RW N+A AVG KSA+EVKRHY+IL
Sbjct: 1  MASSSMSSS---SSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDIL 60

Query: 61 LEDLLRIESGRVPIPNYRGVHNGDE 86
          +EDL+ IE   VP+P Y+ V  G +
Sbjct: 61 VEDLMNIEQDLVPLPKYKTVDVGSK 82

[Close]

BLAST of CmoCh19G006880 vs. TAIR10
Match: AT4G39250.1 (AT4G39250.1 RAD-like 1)

HSP 1 Score: 106.3 bits (264), Expect = 9.9e-24
Identity = 51/86 (59.30%), Postives = 64/86 (74.42%), Query Frame = 1


Query: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60
          MASSS+  Q    +WTAKQNK FE+ALA YD++TP RW N+A  VGGK+ +EVKRHYE+L
Sbjct: 1  MASSSMSSQS-SGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELL 60

Query: 61 LEDLLRIESGRVPIPNYR---GVHNG 84
          ++D+  IE+G VP PNYR   G  NG
Sbjct: 61 VQDINSIENGHVPFPNYRTSGGCTNG 85

[Close]

BLAST of CmoCh19G006880 vs. TAIR10
Match: AT2G18328.1 (AT2G18328.1 RAD-like 4)

HSP 1 Score: 97.1 bits (240), Expect = 6.0e-21
Identity = 47/81 (58.02%), Postives = 60/81 (74.07%), Query Frame = 1


Query: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60
          MASSS+      ++WTA+++K FE ALA +DK+TP+RW  IA AVGGKS +EVKRHYE+L
Sbjct: 1  MASSSMST----SSWTAREDKQFEMALAKFDKDTPDRWQKIARAVGGKSTEEVKRHYELL 60

Query: 61 LEDLLRIESGRVPIPNYRGVH 82
          L D+  IESGR P P YR  +
Sbjct: 61 LRDVNDIESGRYPQPRYRNTN 77

[Close]

BLAST of CmoCh19G006880 vs. TAIR10
Match: AT2G21650.1 (AT2G21650.1 Homeodomain-like superfamily protein)

HSP 1 Score: 96.7 bits (239), Expect = 7.8e-21
Identity = 42/78 (53.85%), Postives = 59/78 (75.64%), Query Frame = 1


Query: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60
          MAS S+       +WT KQNK FE+ALA+YD++TP+RWHN+A AVGGK+ +E KR Y++L
Sbjct: 1  MASGSMSSYG-SGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLL 60

Query: 61 LEDLLRIESGRVPIPNYR 79
          + D+  IE+G VP P+Y+
Sbjct: 61 VRDIESIENGHVPFPDYK 77

[Close]

BLAST of CmoCh19G006880 vs. NCBI nr
Match: gi|659092344|ref|XP_008447023.1| (PREDICTED: protein RADIALIS-like 3 [Cucumis melo])

HSP 1 Score: 158.3 bits (399), Expect = 6.2e-36
Identity = 77/88 (87.50%), Postives = 80/88 (90.91%), Query Frame = 1


Query: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60
          MASSSLKQQRPE TWT KQNKLFEKALALYDK+TPERW NIA AVGGKSADEV+RHYEIL
Sbjct: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60

Query: 61 LEDLLRIESGRVPIPNYRGVHNGDEELR 89
          LEDL +IESGRVPIPNYRG  N DEELR
Sbjct: 61 LEDLRQIESGRVPIPNYRGTSNRDEELR 88

[Close]

BLAST of CmoCh19G006880 vs. NCBI nr
Match: gi|449466753|ref|XP_004151090.1| (PREDICTED: protein RADIALIS-like 3 [Cucumis sativus])

HSP 1 Score: 156.8 bits (395), Expect = 1.8e-35
Identity = 77/88 (87.50%), Postives = 79/88 (89.77%), Query Frame = 1


Query: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60
          MASSSLKQQRPE TWT KQNKLFEKALALYDK+TPERW NIA AVGGKSADEV+RHYEIL
Sbjct: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60

Query: 61 LEDLLRIESGRVPIPNYRGVHNGDEELR 89
          LEDL RIESGRVPIPNYR   N DEELR
Sbjct: 61 LEDLRRIESGRVPIPNYRRTSNRDEELR 88

[Close]

BLAST of CmoCh19G006880 vs. NCBI nr
Match: gi|590685723|ref|XP_007042177.1| (DnaJ subfamily C member 2 [Theobroma cacao])

HSP 1 Score: 140.2 bits (352), Expect = 1.8e-30
Identity = 68/89 (76.40%), Postives = 75/89 (84.27%), Query Frame = 1


Query: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60
          MASSSL Q R   +WTAKQNKLFEKALA YDK+TP+RWHN+A AVGGK+A+EVKRHYEIL
Sbjct: 1  MASSSL-QSRDSVSWTAKQNKLFEKALAKYDKDTPDRWHNVAKAVGGKTAEEVKRHYEIL 60

Query: 61 LEDLLRIESGRVPIPNYRGVHNGDEELRY 90
          +EDL  IESGRVPIPNYR   N DEE RY
Sbjct: 61 VEDLKHIESGRVPIPNYRSTGNADEEERY 88

[Close]

BLAST of CmoCh19G006880 vs. NCBI nr
Match: gi|719996525|ref|XP_010254802.1| (PREDICTED: protein RADIALIS-like 3 [Nelumbo nucifera])

HSP 1 Score: 128.6 bits (322), Expect = 5.3e-27
Identity = 66/93 (70.97%), Postives = 76/93 (81.72%), Query Frame = 1


Query: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60
          MASSSL+     ++WT KQNKLFEKALALYDK+TP+RWHN+A AVGGKSA+EVKRHYEIL
Sbjct: 1  MASSSLRSS--SSSWTPKQNKLFEKALALYDKDTPDRWHNVARAVGGKSAEEVKRHYEIL 60

Query: 61 LEDLLRIESGRVPIPNYR--GVHN---GDEELR 89
          +EDL  IESG+VP PNYR  G H+   GDEE R
Sbjct: 61 IEDLKYIESGQVPFPNYRSSGSHSKGIGDEEQR 91

[Close]

BLAST of CmoCh19G006880 vs. NCBI nr
Match: gi|1012354898|gb|KYP66085.1| (hypothetical protein KK1_012369 [Cajanus cajan])

HSP 1 Score: 127.9 bits (320), Expect = 9.0e-27
Identity = 63/91 (69.23%), Postives = 74/91 (81.32%), Query Frame = 1


Query: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60
          MASSSLKQ+  +++WT KQNKLFEKALA YDK+TP+RW N+A AVG KSADEVKRHYEIL
Sbjct: 1  MASSSLKQKACDSSWTPKQNKLFEKALAKYDKDTPDRWQNVAKAVGDKSADEVKRHYEIL 60

Query: 61 LEDLLRIESGRVPIPNYRGVHNG---DEELR 89
          LEDL  IESGRVP+P Y+ + +    DEE R
Sbjct: 61 LEDLRHIESGRVPLPKYKSIGSSSCVDEEER 91

The following BLAST results are available for this feature:

BLAST of CmoCh19G006880 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RADL6_ARATH	3.2e-24	64.10	Protein RADIALIS-like 6 OS=Arabidopsis thaliana GN=RL6 PE=2 SV=1	[more]
RADL3_ARATH	1.6e-23	62.20	Protein RADIALIS-like 3 OS=Arabidopsis thaliana GN=RL3 PE=2 SV=1	[more]
RADL5_ARATH	2.7e-23	58.82	Protein RADIALIS-like 5 OS=Arabidopsis thaliana GN=RL5 PE=3 SV=1	[more]
RADL1_ARATH	1.8e-22	59.30	Protein RADIALIS-like 1 OS=Arabidopsis thaliana GN=RL1 PE=2 SV=1	[more]
RAD_ANTMA	9.6e-21	65.63	Transcription factor RADIALIS OS=Antirrhinum majus GN=RAD PE=1 SV=1	[more]

BLAST of CmoCh19G006880 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K2A2_CUCSA	1.3e-35	87.50	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G000020 PE=4 SV=1	[more]
A0A061E6U2_THECC	1.2e-30	76.40	DnaJ subfamily C member 2 OS=Theobroma cacao GN=TCM_006875 PE=4 SV=1	[more]
A0A151TGA1_CAJCA	6.3e-27	69.23	Uncharacterized protein OS=Cajanus cajan GN=KK1_012369 PE=4 SV=1	[more]
A0A0B2RZB1_GLYSO	8.2e-27	71.74	DnaJ like subfamily C member 2 OS=Glycine soja GN=glysoja_020526 PE=4 SV=1	[more]
I1LJC8_SOYBN	8.2e-27	71.74	Uncharacterized protein OS=Glycine max GN=GLYMA_11G117200 PE=4 SV=2	[more]

BLAST of CmoCh19G006880 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G75250.1	1.8e-25	64.10	RAD-like 6	[more]
AT1G19510.1	1.5e-24	58.82	RAD-like 5	[more]
AT4G39250.1	9.9e-24	59.30	RAD-like 1	[more]
AT2G18328.1	6.0e-21	58.02	RAD-like 4	[more]
AT2G21650.1	7.8e-21	53.85	Homeodomain-like superfamily protein	[more]

BLAST of CmoCh19G006880 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659092344\|ref\|XP_008447023.1\|	6.2e-36	87.50	PREDICTED: protein RADIALIS-like 3 [Cucumis melo]	[more]
gi\|449466753\|ref\|XP_004151090.1\|	1.8e-35	87.50	PREDICTED: protein RADIALIS-like 3 [Cucumis sativus]	[more]
gi\|590685723\|ref\|XP_007042177.1\|	1.8e-30	76.40	DnaJ subfamily C member 2 [Theobroma cacao]	[more]
gi\|719996525\|ref\|XP_010254802.1\|	5.3e-27	70.97	PREDICTED: protein RADIALIS-like 3 [Nelumbo nucifera]	[more]
gi\|1012354898\|gb\|KYP66085.1\|	9.0e-27	69.23	hypothetical protein KK1_012369 [Cajanus cajan]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001005	SANT/Myb
IPR009057	Homeobox-like_sf
IPR017877	Myb-like_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh19G006880.1	CmoCh19G006880.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 14..57 score: 2.
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 11..63 score: 3.
IPR009057	Homeodomain-like	GENE3D	G3DSA:1.10.10.60		coord: 6..61 score: 2.
IPR009057	Homeodomain-like	unknown	SSF46689	Homeodomain-like	coord: 14..69 score: 2.57
IPR017877	Myb-like domain	PROFILE	PS50090	MYB_LIKE	coord: 7..61 score: 6
None	No IPR available	PANTHER	PTHR24078	DNAJ HOMOLOG SUBFAMILY C MEMBER	coord: 15..88 score: 1.1
None	No IPR available	PANTHER	PTHR24078:SF177	PROTEIN DNJ-23-RELATED	coord: 15..88 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh19G006880	Cucsa.377690	Cucumber (Gy14) v1	cgycmoB1037
CmoCh19G006880	Csa7G000020	Cucumber (Chinese Long) v2	cmocuB518
CmoCh19G006880	CSPI07G00010	Wild cucumber (PI 183967)	cmocpiB524
CmoCh19G006880	Cp4.1LG04g00950	Cucurbita pepo (Zucchini)	cmocpeB495
CmoCh19G006880	Cp4.1LG15g05510	Cucurbita pepo (Zucchini)	cmocpeB481
CmoCh19G006880	MELO3C012498.2	Melon (DHL92) v3.6.1	cmomedB522
CmoCh19G006880	Cla97C02G031860	Watermelon (97103) v2	cmowmbB512
CmoCh19G006880	Carg24681	Silver-seed gourd	carcmoB0246

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh19G006880	Cucumber (Gy14) v2	cgybcmoB202
CmoCh19G006880	Cucumber (Gy14) v2	cgybcmoB927
CmoCh19G006880	Silver-seed gourd	carcmoB0433
CmoCh19G006880	Silver-seed gourd	carcmoB1202
CmoCh19G006880	Cucumber (Chinese Long) v3	cmocucB0590
CmoCh19G006880	Cucumber (Chinese Long) v3	cmocucB0622
CmoCh19G006880	Watermelon (97103) v2	cmowmbB507
CmoCh19G006880	Wax gourd	cmowgoB0641
CmoCh19G006880	Wax gourd	cmowgoB0666
CmoCh19G006880	Cucurbita moschata (Rifu)	cmocmoB111
CmoCh19G006880	Cucurbita moschata (Rifu)	cmocmoB382
CmoCh19G006880	Cucurbita moschata (Rifu)	cmocmoB388
CmoCh19G006880	Cucumber (Gy14) v1	cgycmoB0251
CmoCh19G006880	Cucurbita maxima (Rimu)	cmacmoB146
CmoCh19G006880	Cucurbita maxima (Rimu)	cmacmoB508
CmoCh19G006880	Cucurbita maxima (Rimu)	cmacmoB548
CmoCh19G006880	Cucurbita maxima (Rimu)	cmacmoB599
CmoCh19G006880	Wild cucumber (PI 183967)	cmocpiB500
CmoCh19G006880	Melon (DHL92) v3.5.1	cmomeB453
CmoCh19G006880	Watermelon (Charleston Gray)	cmowcgB455
CmoCh19G006880	Watermelon (Charleston Gray)	cmowcgB459
CmoCh19G006880	Watermelon (97103) v1	cmowmB496
CmoCh19G006880	Watermelon (97103) v1	cmowmB498
CmoCh19G006880	Cucurbita pepo (Zucchini)	cmocpeB484
CmoCh19G006880	Cucurbita pepo (Zucchini)	cmocpeB499
CmoCh19G006880	Bottle gourd (USVL1VR-Ls)	cmolsiB454
CmoCh19G006880	Bottle gourd (USVL1VR-Ls)	cmolsiB457