CmoCh11G011180 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh11G011180
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	(DNA binding protein) (MYB-related transcription factor)
Location	Cmo_Chr11 : 6295785 .. 6296519 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGATCACCATCTAAACCAGAACCCCATCTCAAAATTGTTCTTCTCGAATTCTTTTTCCAATGGCTTCAAGCTCTTTGAAGCATCTCCGACCGGAAGCGATGTGGACGACAAAGCAGAACAAGCTGTTCGAGATGGCATTGGCTTTGTACGACAAAGAAACGCCTGAGAGATGGCAGAATGTTGCCAAGGCCGTCAGCGGGAAGTCGGCCGAGGAAGTCGAAAGACACTATGAGATACTCTTGGAAGATCTCCAGCGGATTGAGTCGGGGTGTGTTCCTATTCCAAATTATAGAGCTGCCGGAAATGGAGATGAAGAATTGAGGTTAGTGATGAAGATGATCAAAGATATGAAATATGGTTTATAATTTTTGTGTTCTATATCAATGAGGGAATAAAAGGTTGTGATTTGCTTTTGCTATTGCTAGGTTGCTCAAGTCGCTTAAGTTTCAATGAAGTTGGCTCAAATGGCTGCGTGGATTCATACCTATTTTACTCTACAACTTTATCTTTTAAAGCCTTTTATGTACAATTAACGATTTGCTTCATTATCATTTGTTAATTATATATTACCCTTTCTTCAATACCGAAAGATTCTATTGACATGATGACTCTGATATCATATTCGGAATTACGGGCATCATCATCGGTATGATATTGTGTACTTAGATTTTGTGAGATAGTGTTACTTACTTGTAAACTCATATTCTTCCTCTTAATTAATTAACCAAAGTGGG

mRNA sequence

TTGATCACCATCTAAACCAGAACCCCATCTCAAAATTGTTCTTCTCGAATTCTTTTTCCAATGGCTTCAAGCTCTTTGAAGCATCTCCGACCGGAAGCGATGTGGACGACAAAGCAGAACAAGCTGTTCGAGATGGCATTGGCTTTGTACGACAAAGAAACGCCTGAGAGATGGCAGAATGTTGCCAAGGCCGTCAGCGGGAAGTCGGCCGAGGAAGTCGAAAGACACTATGAGATACTCTTGGAAGATCTCCAGCGGATTGAGTCGGGGTGTGTTCCTATTCCAAATTATAGAGCTGCCGGAAATGGAGATGAAGAATTGAGGTTGCTCAAGTCGCTTAAGTTTCAATGAAGTTGGCTCAAATGGCTGCGTGGATTCATACCTATTTTACTCTACAACTTTATCTTTTAAAGCCTTTTATGTACAATTAACGATTTGCTTCATTATCATTTGTTAATTATATATTACCCTTTCTTCAATACCGAAAGATTCTATTGACATGATGACTCTGATATCATATTCGGAATTACGGGCATCATCATCGGTATGATATTGTGTACTTAGATTTTGTGAGATAGTGTTACTTACTTGTAAACTCATATTCTTCCTCTTAATTAATTAACCAAAGTGGG

Coding sequence (CDS)

ATGGCTTCAAGCTCTTTGAAGCATCTCCGACCGGAAGCGATGTGGACGACAAAGCAGAACAAGCTGTTCGAGATGGCATTGGCTTTGTACGACAAAGAAACGCCTGAGAGATGGCAGAATGTTGCCAAGGCCGTCAGCGGGAAGTCGGCCGAGGAAGTCGAAAGACACTATGAGATACTCTTGGAAGATCTCCAGCGGATTGAGTCGGGGTGTGTTCCTATTCCAAATTATAGAGCTGCCGGAAATGGAGATGAAGAATTGAGGTTGCTCAAGTCGCTTAAGTTTCAATGA

Homology

[Close]

BLAST of CmoCh11G011180 vs. Swiss-Prot
Match: RADL5_ARATH (Protein RADIALIS-like 5 OS=Arabidopsis thaliana GN=RL5 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 9.1e-25
Identity = 57/103 (55.34%), Postives = 75/103 (72.82%), Query Frame = 1


Query: 1   MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEIL 60
           MASSS+      + WT+KQNK+FE ALA+YDK+TP+RWQNVAKAV  KSAEEV+RHY+IL
Sbjct: 1   MASSSMSS---SSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDIL 60

Query: 61  LEDLQRIESGCVPIPNY-------RAAGNGDEELRLLKSLKFQ 97
           +EDL  IE   VP+P Y       ++ G  D +LRL+K+++ Q
Sbjct: 61  VEDLMNIEQDLVPLPKYKTVDVGSKSRGIDDFDLRLMKNMRIQ 100

[Close]

BLAST of CmoCh11G011180 vs. Swiss-Prot
Match: RADL1_ARATH (Protein RADIALIS-like 1 OS=Arabidopsis thaliana GN=RL1 PE=2 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 6.5e-23
Identity = 53/101 (52.48%), Postives = 72/101 (71.29%), Query Frame = 1


Query: 1   MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEIL 60
           MASSS+   +    WT KQNK FE ALA YD++TP RWQNVAK V GK+ EEV+RHYE+L
Sbjct: 1   MASSSMSS-QSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELL 60

Query: 61  LEDLQRIESGCVPIPNYRAAG---NG--DEELRLLKSLKFQ 97
           ++D+  IE+G VP PNYR +G   NG   +E + +++++ Q
Sbjct: 61  VQDINSIENGHVPFPNYRTSGGCTNGRLSQEEKRMRNMRLQ 100

[Close]

BLAST of CmoCh11G011180 vs. Swiss-Prot
Match: RADL6_ARATH (Protein RADIALIS-like 6 OS=Arabidopsis thaliana GN=RL6 PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.1e-22
Identity = 54/99 (54.55%), Postives = 71/99 (71.72%), Query Frame = 1


Query: 1  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEIL 60
          MAS+S   + P   WT  QNK+FE ALA+YDK+TP+RW NVAKAV GK+ EEV+RHY+IL
Sbjct: 1  MASNSRSSISP---WTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDIL 60

Query: 61 LEDLQRIESGCVPIPNYR-----AAGNGDEELRLLKSLK 95
          +EDL  IE+G VP+PNY+     +    D + R +K+LK
Sbjct: 61 VEDLINIETGRVPLPNYKTFESNSRSINDFDTRKMKNLK 96

[Close]

BLAST of CmoCh11G011180 vs. Swiss-Prot
Match: RADL3_ARATH (Protein RADIALIS-like 3 OS=Arabidopsis thaliana GN=RL3 PE=2 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 3.2e-22
Identity = 51/82 (62.20%), Postives = 62/82 (75.61%), Query Frame = 1


Query: 1  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEIL 60
          MAS+S+      A WT K+NKLFE ALA YD++TP+RW NVA+AV GKSAEEV RHYE+L
Sbjct: 1  MASNSMSS---SASWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELL 60

Query: 61 LEDLQRIESGCVPIPNYRAAGN 83
          + D+  IESG  P PNYR+ GN
Sbjct: 61 IRDVNDIESGRYPHPNYRSNGN 79

[Close]

BLAST of CmoCh11G011180 vs. Swiss-Prot
Match: RAD_ANTMA (Transcription factor RADIALIS OS=Antirrhinum majus GN=RAD PE=1 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 3.6e-21
Identity = 46/83 (55.42%), Postives = 64/83 (77.11%), Query Frame = 1


Query: 15 WTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEILLEDLQRIESGCVPI 74
          W+ K+NK FE ALA+YDK+TP+RW NVA+AV G++ EEV++HYEIL+ED++ IESG VP 
Sbjct: 11 WSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVPF 70

Query: 75 PNYR-AAGNGDEELRLLKSLKFQ 97
          PNYR   GN   + +  ++LK +
Sbjct: 71 PNYRTTGGNMKTDEKRFRNLKIR 93

[Close]

BLAST of CmoCh11G011180 vs. TrEMBL
Match: A0A0A0K2A2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G000020 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 6.7e-35
Identity = 76/96 (79.17%), Postives = 81/96 (84.38%), Query Frame = 1


Query: 1  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEIL 60
          MASSSLK  RPE  WT KQNKLFE ALALYDK+TPERWQN+A AV GKSA+EV+RHYEIL
Sbjct: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60

Query: 61 LEDLQRIESGCVPIPNYRAAGNGDEELRLLKSLKFQ 97
          LEDL+RIESG VPIPNYR   N DEELRLLK LK Q
Sbjct: 61 LEDLRRIESGRVPIPNYRRTSNRDEELRLLKYLKLQ 96

[Close]

BLAST of CmoCh11G011180 vs. TrEMBL
Match: D7TQ27_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0063g02670 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 2.1e-28
Identity = 63/86 (73.26%), Postives = 75/86 (87.21%), Query Frame = 1


Query: 14 MWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEILLEDLQRIESGCVP 73
          +WT+KQNKLFE ALALYDK+TP+RWQNVAKAV GKSAEEV+RHYEIL+EDL+ IESG VP
Sbjct: 11 LWTSKQNKLFEKALALYDKDTPDRWQNVAKAVGGKSAEEVKRHYEILIEDLKHIESGHVP 70

Query: 74 IPNYRAAGN---GDEELRLLKSLKFQ 97
          IPNY++ G+   GD+E RLLK +K Q
Sbjct: 71 IPNYKSTGSNSIGDQEQRLLKCIKLQ 96

[Close]

BLAST of CmoCh11G011180 vs. TrEMBL
Match: A0A0B2RZB1_GLYSO (DnaJ like subfamily C member 2 OS=Glycine soja GN=glysoja_020526 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 1.8e-27
Identity = 69/98 (70.41%), Postives = 78/98 (79.59%), Query Frame = 1


Query: 1  MASSSL-KHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEI 60
          MASSSL K    ++ WT KQNKLFE ALA YDK+TPERWQNVAKAV GKSA+EV+RHYEI
Sbjct: 1  MASSSLSKQKASDSSWTPKQNKLFEKALAKYDKDTPERWQNVAKAVGGKSADEVKRHYEI 60

Query: 61 LLEDLQRIESGCVPIPNYRAAG---NGDEELRLLKSLK 95
          LLEDL+ IESG VP+P Y++ G   N DEE RLLK LK
Sbjct: 61 LLEDLRHIESGRVPLPKYKSTGSSTNVDEEERLLKYLK 98

[Close]

BLAST of CmoCh11G011180 vs. TrEMBL
Match: I1LJC8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_11G117200 PE=4 SV=2)

HSP 1 Score: 129.8 bits (325), Expect = 1.8e-27
Identity = 69/98 (70.41%), Postives = 78/98 (79.59%), Query Frame = 1


Query: 1  MASSSL-KHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEI 60
          MASSSL K    ++ WT KQNKLFE ALA YDK+TPERWQNVAKAV GKSA+EV+RHYEI
Sbjct: 1  MASSSLSKQKASDSSWTPKQNKLFEKALAKYDKDTPERWQNVAKAVGGKSADEVKRHYEI 60

Query: 61 LLEDLQRIESGCVPIPNYRAAG---NGDEELRLLKSLK 95
          LLEDL+ IESG VP+P Y++ G   N DEE RLLK LK
Sbjct: 61 LLEDLRHIESGRVPLPKYKSTGSSTNVDEEERLLKYLK 98

[Close]

BLAST of CmoCh11G011180 vs. TrEMBL
Match: A0A061E6U2_THECC (DnaJ subfamily C member 2 OS=Theobroma cacao GN=TCM_006875 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 3.0e-27
Identity = 64/88 (72.73%), Postives = 72/88 (81.82%), Query Frame = 1


Query: 1  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEIL 60
          MASSSL+  R    WT KQNKLFE ALA YDK+TP+RW NVAKAV GK+AEEV+RHYEIL
Sbjct: 1  MASSSLQS-RDSVSWTAKQNKLFEKALAKYDKDTPDRWHNVAKAVGGKTAEEVKRHYEIL 60

Query: 61 LEDLQRIESGCVPIPNYRAAGNGDEELR 89
          +EDL+ IESG VPIPNYR+ GN DEE R
Sbjct: 61 VEDLKHIESGRVPIPNYRSTGNADEEER 87

[Close]

BLAST of CmoCh11G011180 vs. TAIR10
Match: AT1G19510.1 (AT1G19510.1 RAD-like 5)

HSP 1 Score: 114.0 bits (284), Expect = 5.1e-26
Identity = 57/103 (55.34%), Postives = 75/103 (72.82%), Query Frame = 1


Query: 1   MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEIL 60
           MASSS+      + WT+KQNK+FE ALA+YDK+TP+RWQNVAKAV  KSAEEV+RHY+IL
Sbjct: 1   MASSSMSS---SSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDIL 60

Query: 61  LEDLQRIESGCVPIPNY-------RAAGNGDEELRLLKSLKFQ 97
           +EDL  IE   VP+P Y       ++ G  D +LRL+K+++ Q
Sbjct: 61  VEDLMNIEQDLVPLPKYKTVDVGSKSRGIDDFDLRLMKNMRIQ 100

[Close]

BLAST of CmoCh11G011180 vs. TAIR10
Match: AT4G39250.1 (AT4G39250.1 RAD-like 1)

HSP 1 Score: 107.8 bits (268), Expect = 3.7e-24
Identity = 53/101 (52.48%), Postives = 72/101 (71.29%), Query Frame = 1


Query: 1   MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEIL 60
           MASSS+   +    WT KQNK FE ALA YD++TP RWQNVAK V GK+ EEV+RHYE+L
Sbjct: 1   MASSSMSS-QSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELL 60

Query: 61  LEDLQRIESGCVPIPNYRAAG---NG--DEELRLLKSLKFQ 97
           ++D+  IE+G VP PNYR +G   NG   +E + +++++ Q
Sbjct: 61  VQDINSIENGHVPFPNYRTSGGCTNGRLSQEEKRMRNMRLQ 100

[Close]

BLAST of CmoCh11G011180 vs. TAIR10
Match: AT1G75250.1 (AT1G75250.1 RAD-like 6)

HSP 1 Score: 104.4 bits (259), Expect = 4.1e-23
Identity = 49/78 (62.82%), Postives = 62/78 (79.49%), Query Frame = 1


Query: 1  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEIL 60
          MAS+S   + P   WT  QNK+FE ALA+YDK+TP+RW NVAKAV GK+ EEV+RHY+IL
Sbjct: 1  MASNSRSSISP---WTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDIL 60

Query: 61 LEDLQRIESGCVPIPNYR 79
          +EDL  IE+G VP+PNY+
Sbjct: 61 VEDLINIETGRVPLPNYK 75

[Close]

BLAST of CmoCh11G011180 vs. TAIR10
Match: AT2G21650.1 (AT2G21650.1 Homeodomain-like superfamily protein)

HSP 1 Score: 95.1 bits (235), Expect = 2.5e-20
Identity = 50/103 (48.54%), Postives = 69/103 (66.99%), Query Frame = 1


Query: 1   MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEIL 60
           MAS S+        WT KQNK FE ALA+YD++TP+RW NVA+AV GK+ EE +R Y++L
Sbjct: 1   MASGSMSSYG-SGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLL 60

Query: 61  LEDLQRIESGCVPIPNYR-AAGNG------DEELRLLKSLKFQ 97
           + D++ IE+G VP P+Y+   GN       DEE R ++S+K Q
Sbjct: 61  VRDIESIENGHVPFPDYKTTTGNSNRGRLRDEEKR-MRSMKLQ 101

[Close]

BLAST of CmoCh11G011180 vs. TAIR10
Match: AT2G18328.1 (AT2G18328.1 RAD-like 4)

HSP 1 Score: 94.0 bits (232), Expect = 5.5e-20
Identity = 45/78 (57.69%), Postives = 58/78 (74.36%), Query Frame = 1


Query: 1  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEIL 60
          MASSS+      + WT +++K FEMALA +DK+TP+RWQ +A+AV GKS EEV+RHYE+L
Sbjct: 1  MASSSMS----TSSWTAREDKQFEMALAKFDKDTPDRWQKIARAVGGKSTEEVKRHYELL 60

Query: 61 LEDLQRIESGCVPIPNYR 79
          L D+  IESG  P P YR
Sbjct: 61 LRDVNDIESGRYPQPRYR 74

[Close]

BLAST of CmoCh11G011180 vs. NCBI nr
Match: gi|449466753|ref|XP_004151090.1| (PREDICTED: protein RADIALIS-like 3 [Cucumis sativus])

HSP 1 Score: 154.5 bits (389), Expect = 9.7e-35
Identity = 76/96 (79.17%), Postives = 81/96 (84.38%), Query Frame = 1


Query: 1  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEIL 60
          MASSSLK  RPE  WT KQNKLFE ALALYDK+TPERWQN+A AV GKSA+EV+RHYEIL
Sbjct: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60

Query: 61 LEDLQRIESGCVPIPNYRAAGNGDEELRLLKSLKFQ 97
          LEDL+RIESG VPIPNYR   N DEELRLLK LK Q
Sbjct: 61 LEDLRRIESGRVPIPNYRRTSNRDEELRLLKYLKLQ 96

[Close]

BLAST of CmoCh11G011180 vs. NCBI nr
Match: gi|659092344|ref|XP_008447023.1| (PREDICTED: protein RADIALIS-like 3 [Cucumis melo])

HSP 1 Score: 153.3 bits (386), Expect = 2.2e-34
Identity = 75/96 (78.12%), Postives = 81/96 (84.38%), Query Frame = 1


Query: 1  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEIL 60
          MASSSLK  RPE  WT KQNKLFE ALALYDK+TPERWQN+A AV GKSA+EV+RHYEIL
Sbjct: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60

Query: 61 LEDLQRIESGCVPIPNYRAAGNGDEELRLLKSLKFQ 97
          LEDL++IESG VPIPNYR   N DEELRLLK LK Q
Sbjct: 61 LEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ 96

[Close]

BLAST of CmoCh11G011180 vs. NCBI nr
Match: gi|720024458|ref|XP_010263639.1| (PREDICTED: protein RADIALIS-like 3 [Nelumbo nucifera])

HSP 1 Score: 133.3 bits (334), Expect = 2.3e-28
Identity = 69/101 (68.32%), Postives = 81/101 (80.20%), Query Frame = 1


Query: 1   MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEIL 60
           MASSSL+     + WT KQNKLFE ALALYDK+TP+RWQNVAKAV GKSAEEV+RHYEIL
Sbjct: 1   MASSSLRG-SSSSTWTPKQNKLFEKALALYDKDTPDRWQNVAKAVGGKSAEEVKRHYEIL 60

Query: 61  LEDLQRIESGCVPIPNYRAAGN-----GDEELRLLKSLKFQ 97
           +EDL+ IESG VP PNY+++G+     GDEE RLL+ LK Q
Sbjct: 61  IEDLKHIESGKVPFPNYKSSGSSSQGIGDEEQRLLEYLKLQ 100

[Close]

BLAST of CmoCh11G011180 vs. NCBI nr
Match: gi|359475346|ref|XP_003631666.1| (PREDICTED: protein RADIALIS-like 3 [Vitis vinifera])

HSP 1 Score: 132.9 bits (333), Expect = 3.0e-28
Identity = 63/86 (73.26%), Postives = 75/86 (87.21%), Query Frame = 1


Query: 14 MWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEILLEDLQRIESGCVP 73
          +WT+KQNKLFE ALALYDK+TP+RWQNVAKAV GKSAEEV+RHYEIL+EDL+ IESG VP
Sbjct: 11 LWTSKQNKLFEKALALYDKDTPDRWQNVAKAVGGKSAEEVKRHYEILIEDLKHIESGHVP 70

Query: 74 IPNYRAAGN---GDEELRLLKSLKFQ 97
          IPNY++ G+   GD+E RLLK +K Q
Sbjct: 71 IPNYKSTGSNSIGDQEQRLLKCIKLQ 96

[Close]

BLAST of CmoCh11G011180 vs. NCBI nr
Match: gi|719996525|ref|XP_010254802.1| (PREDICTED: protein RADIALIS-like 3 [Nelumbo nucifera])

HSP 1 Score: 132.5 bits (332), Expect = 3.9e-28
Identity = 69/101 (68.32%), Postives = 80/101 (79.21%), Query Frame = 1


Query: 1  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEIL 60
          MASSSL+     + WT KQNKLFE ALALYDK+TP+RW NVA+AV GKSAEEV+RHYEIL
Sbjct: 1  MASSSLRS--SSSSWTPKQNKLFEKALALYDKDTPDRWHNVARAVGGKSAEEVKRHYEIL 60

Query: 61 LEDLQRIESGCVPIPNYRAAGN-----GDEELRLLKSLKFQ 97
          +EDL+ IESG VP PNYR++G+     GDEE RLLK LK Q
Sbjct: 61 IEDLKYIESGQVPFPNYRSSGSHSKGIGDEEQRLLKYLKLQ 99

The following BLAST results are available for this feature:

BLAST of CmoCh11G011180 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RADL5_ARATH	9.1e-25	55.34	Protein RADIALIS-like 5 OS=Arabidopsis thaliana GN=RL5 PE=3 SV=1	[more]
RADL1_ARATH	6.5e-23	52.48	Protein RADIALIS-like 1 OS=Arabidopsis thaliana GN=RL1 PE=2 SV=1	[more]
RADL6_ARATH	1.1e-22	54.55	Protein RADIALIS-like 6 OS=Arabidopsis thaliana GN=RL6 PE=2 SV=1	[more]
RADL3_ARATH	3.2e-22	62.20	Protein RADIALIS-like 3 OS=Arabidopsis thaliana GN=RL3 PE=2 SV=1	[more]
RAD_ANTMA	3.6e-21	55.42	Transcription factor RADIALIS OS=Antirrhinum majus GN=RAD PE=1 SV=1	[more]

BLAST of CmoCh11G011180 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K2A2_CUCSA	6.7e-35	79.17	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G000020 PE=4 SV=1	[more]
D7TQ27_VITVI	2.1e-28	73.26	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0063g02670 PE=4 SV=...	[more]
A0A0B2RZB1_GLYSO	1.8e-27	70.41	DnaJ like subfamily C member 2 OS=Glycine soja GN=glysoja_020526 PE=4 SV=1	[more]
I1LJC8_SOYBN	1.8e-27	70.41	Uncharacterized protein OS=Glycine max GN=GLYMA_11G117200 PE=4 SV=2	[more]
A0A061E6U2_THECC	3.0e-27	72.73	DnaJ subfamily C member 2 OS=Theobroma cacao GN=TCM_006875 PE=4 SV=1	[more]

BLAST of CmoCh11G011180 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G19510.1	5.1e-26	55.34	RAD-like 5	[more]
AT4G39250.1	3.7e-24	52.48	RAD-like 1	[more]
AT1G75250.1	4.1e-23	62.82	RAD-like 6	[more]
AT2G21650.1	2.5e-20	48.54	Homeodomain-like superfamily protein	[more]
AT2G18328.1	5.5e-20	57.69	RAD-like 4	[more]

BLAST of CmoCh11G011180 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449466753\|ref\|XP_004151090.1\|	9.7e-35	79.17	PREDICTED: protein RADIALIS-like 3 [Cucumis sativus]	[more]
gi\|659092344\|ref\|XP_008447023.1\|	2.2e-34	78.13	PREDICTED: protein RADIALIS-like 3 [Cucumis melo]	[more]
gi\|720024458\|ref\|XP_010263639.1\|	2.3e-28	68.32	PREDICTED: protein RADIALIS-like 3 [Nelumbo nucifera]	[more]
gi\|359475346\|ref\|XP_003631666.1\|	3.0e-28	73.26	PREDICTED: protein RADIALIS-like 3 [Vitis vinifera]	[more]
gi\|719996525\|ref\|XP_010254802.1\|	3.9e-28	68.32	PREDICTED: protein RADIALIS-like 3 [Nelumbo nucifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001005	SANT/Myb
IPR009057	Homeobox-like_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G011180.1	CmoCh11G011180.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 11..63 score: 0.
IPR009057	Homeodomain-like	GENE3D	G3DSA:1.10.10.60		coord: 15..67 score: 9.
IPR009057	Homeodomain-like	unknown	SSF46689	Homeodomain-like	coord: 15..68 score: 2.61
None	No IPR available	unknown	Coil	Coil	coord: 50..70 scor
None	No IPR available	PANTHER	PTHR24078	DNAJ HOMOLOG SUBFAMILY C MEMBER	coord: 15..88 score: 1.5
None	No IPR available	PANTHER	PTHR24078:SF177	PROTEIN DNJ-23-RELATED	coord: 15..88 score: 1.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh11G011180	Cucsa.377690	Cucumber (Gy14) v1	cgycmoB1036
CmoCh11G011180	Cla015915	Watermelon (97103) v1	cmowmB111
CmoCh11G011180	Csa7G000020	Cucumber (Chinese Long) v2	cmocuB139
CmoCh11G011180	MELO3C012498	Melon (DHL92) v3.5.1	cmomeB086
CmoCh11G011180	ClCG02G004900	Watermelon (Charleston Gray)	cmowcgB089
CmoCh11G011180	CSPI07G00010	Wild cucumber (PI 183967)	cmocpiB138
CmoCh11G011180	Lsi11G011070	Bottle gourd (USVL1VR-Ls)	cmolsiB090
CmoCh11G011180	Cp4.1LG04g00950	Cucurbita pepo (Zucchini)	cmocpeB127
CmoCh11G011180	Cp4.1LG15g05510	Cucurbita pepo (Zucchini)	cmocpeB096
CmoCh11G011180	MELO3C012498.2	Melon (DHL92) v3.6.1	cmomedB092
CmoCh11G011180	CsaV3_7G000010	Cucumber (Chinese Long) v3	cmocucB0161
CmoCh11G011180	Cla97C02G031860	Watermelon (97103) v2	cmowmbB089
CmoCh11G011180	Bhi05G001105	Wax gourd	cmowgoB0121
CmoCh11G011180	CsGy7G000080	Cucumber (Gy14) v2	cgybcmoB882
CmoCh11G011180	Carg19405	Silver-seed gourd	carcmoB0431
CmoCh11G011180	Carg24681	Silver-seed gourd	carcmoB0245

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh11G011180	CmoCh19G006860	Cucurbita moschata (Rifu)	cmocmoB111

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh11G011180	Cucurbita moschata (Rifu)	cmocmoB120
CmoCh11G011180	Cucurbita maxima (Rimu)	cmacmoB112
CmoCh11G011180	Cucurbita maxima (Rimu)	cmacmoB495