Cp4.1LG04g00900 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG04g00900
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionMyb family transcription factor family protein
LocationCp4.1LG04 : 1074963 .. 1076402 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAGACAAATCATTGAAATGCCTTTTAAAGGTAATAACATTTCTCATTGCCCAATTGGATTTGCCCCACCTATCAACCTTCTCAATCCTTCTTATAAAGACCACCCACTGCCCTCTCTTTTGCCACACACATTGCCATTCTTTCCCTTGCAACCTTTTGAGCCCTTTCTTCCTTATTTTTATACTATTATCATGGCTTCCATGTCTTCCCATGGCTCTGCTTCATGGACTGCAAAGCAAAACAAAGCCTTTGAGGAGGCTTTGGCACGGTATGACCGAGACACACCTGACCGATGGCTCAATGTTGCAAGAGCTGTCGGTGGAAAAACCGAAGAGGAGGTCAAAAGGCACTACCAACTTCTTGTGGAGGATGTCAAGTTCATTGAGTCGGGCCGTGTTCCCTACCCGTATCGAAACTCAGGAGCCAGTAGCTAAGGTAACATGATCACTGATGACAAAAATATGCATACAAAAAGAATCATGATAATGTCGTTACTGAAAACACTCGTTTATACACCCTGGTCAATAGTAACTCCTCGTAACTTTCAAATGGCTCAAAAGTTTTAGTAGAAGTCCGTATCTATTCATTGCAATAGAAACAGGTTAATAAAAGTACATAAAACCAAAATATCCTATTCATTAGGTTCTCCTCATTCATATCTAAGTTTTGTTCCTGATGATGTAGAACGTTTACATCATCATATCATCTTTGAAATTTATTTTCTTTCAATCAATATCTGATCATAATCTATAATAGTAATGTAGCTAAACGTATCGATCAAAGTAGAAGGTCATACGTTCATCCGTTCGACCATGTTTATATAAAATAGTTGGTTAGTTGGGTTGAAGAAACCCTAGCCACACCATTGGGTTGTAAATGATCCCTTAGCTAGCTTGAAACGGATGTCATTATACAGTTTGTAAGTATATGAGCAGAGGAATGTCATTATCGATGAATAGAGGCCCCACAGTTGGGTTGGATTCTTGTGTCAATGAATGGCTATATGTTTCAATAAAAAAAACAATATAACTCATCGTCTTGTAAGCTTTTTGAAAGCCACCCTTCTTGTTCTTCCAAACTAAAGCTGCACCAATGTCTCAGCATTGGCTCTCACACCCCCAACAAAAACAAGAATAATATTATATTATTGTTCATGTTGGATTGTAACCCAATGTTTTTTTTTTTTTAATTTCAGGATGAGAAACAAGAAGCTCCATTGATCATGATCGTGAAGTAATAGAAAAATAAAAGGATTGGAGGAAGAACCATTTGCTAATGATTTGAAGAGTTATAATATCTATATTTCATTTGATATTCGTGTTAAGCTTGAAGTTAGTTTATTAATTCCATCGACTTTCAATTTTGAGAGGAAAAGATCGAAAGAATTATCCGATTCTTTTAGATGGATAATGAATATTTATGTTGTTTTGCAATGAAATCT

mRNA sequence

GAGACAAATCATTGAAATGCCTTTTAAAGGTAATAACATTTCTCATTGCCCAATTGGATTTGCCCCACCTATCAACCTTCTCAATCCTTCTTATAAAGACCACCCACTGCCCTCTCTTTTGCCACACACATTGCCATTCTTTCCCTTGCAACCTTTTGAGCCCTTTCTTCCTTATTTTTATACTATTATCATGGCTTCCATGTCTTCCCATGGCTCTGCTTCATGGACTGCAAAGCAAAACAAAGCCTTTGAGGAGGCTTTGGCACGGTATGACCGAGACACACCTGACCGATGGCTCAATGTTGCAAGAGCTGTCGGTGGAAAAACCGAAGAGGAGGTCAAAAGGCACTACCAACTTCTTGTGGAGGATGTCAAGTTCATTGAGTCGGGCCGTGTTCCCTACCCGTATCGAAACTCAGGAGCCAGTAGCTAAGATGAGAAACAAGAAGCTCCATTGATCATGATCGTGAAGTAATAGAAAAATAAAAGGATTGGAGGAAGAACCATTTGCTAATGATTTGAAGAGTTATAATATCTATATTTCATTTGATATTCGTGTTAAGCTTGAAGTTAGTTTATTAATTCCATCGACTTTCAATTTTGAGAGGAAAAGATCGAAAGAATTATCCGATTCTTTTAGATGGATAATGAATATTTATGTTGTTTTGCAATGAAATCT

Coding sequence (CDS)

ATGCCTTTTAAAGGTAATAACATTTCTCATTGCCCAATTGGATTTGCCCCACCTATCAACCTTCTCAATCCTTCTTATAAAGACCACCCACTGCCCTCTCTTTTGCCACACACATTGCCATTCTTTCCCTTGCAACCTTTTGAGCCCTTTCTTCCTTATTTTTATACTATTATCATGGCTTCCATGTCTTCCCATGGCTCTGCTTCATGGACTGCAAAGCAAAACAAAGCCTTTGAGGAGGCTTTGGCACGGTATGACCGAGACACACCTGACCGATGGCTCAATGTTGCAAGAGCTGTCGGTGGAAAAACCGAAGAGGAGGTCAAAAGGCACTACCAACTTCTTGTGGAGGATGTCAAGTTCATTGAGTCGGGCCGTGTTCCCTACCCGTATCGAAACTCAGGAGCCAGTAGCTAA

Protein sequence

MPFKGNNISHCPIGFAPPINLLNPSYKDHPLPSLLPHTLPFFPLQPFEPFLPYFYTIIMASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVEDVKFIESGRVPYPYRNSGASS
Homology
[Close]
BLAST of Cp4.1LG04g00900 vs. Swiss-Prot
Match: RADL1_ARATH (Protein RADIALIS-like 1 OS=Arabidopsis thaliana GN=RL1 PE=2 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.5e-25
Identity = 55/77 (71.43%), Postives = 65/77 (84.42%), Query Frame = 1 

Query: 60  ASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVEDV 119
           +SMSS  S SWTAKQNKAFE+ALA YD+DTP+RW NVA+ VGGKT EEVKRHY+LLV+D+
Sbjct: 4   SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDI 63

Query: 120 KFIESGRVPYP-YRNSG 136
             IE+G VP+P YR SG
Sbjct: 64  NSIENGHVPFPNYRTSG 80

[Close]
BLAST of Cp4.1LG04g00900 vs. Swiss-Prot
Match: RADL2_ARATH (Protein RADIALIS-like 2 OS=Arabidopsis thaliana GN=RL2 PE=2 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 6.5e-24
Identity = 54/79 (68.35%), Postives = 63/79 (79.75%), Query Frame = 1 

Query: 61  SMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVEDVK 120
           SMSS+GS SWT KQNKAFE ALA YD+DTPDRW NVARAVGGKT EE KR Y LLV D++
Sbjct: 5   SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIE 64

Query: 121 FIESGRVPYP-YRNSGASS 139
            IE+G VP+P Y+ +  +S
Sbjct: 65  SIENGHVPFPDYKTTTGNS 83

[Close]
BLAST of Cp4.1LG04g00900 vs. Swiss-Prot
Match: RADL3_ARATH (Protein RADIALIS-like 3 OS=Arabidopsis thaliana GN=RL3 PE=2 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 8.5e-24
Identity = 54/78 (69.23%), Postives = 63/78 (80.77%), Query Frame = 1 

Query: 59  MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVED 118
           MAS S   SASWT K+NK FE ALA YD+DTPDRW NVARAVGGK+ EEV+RHY+LL+ D
Sbjct: 1   MASNSMSSSASWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELLIRD 60

Query: 119 VKFIESGRVPYP-YRNSG 136
           V  IESGR P+P YR++G
Sbjct: 61  VNDIESGRYPHPNYRSNG 78

[Close]
BLAST of Cp4.1LG04g00900 vs. Swiss-Prot
Match: RAD_ANTMA (Transcription factor RADIALIS OS=Antirrhinum majus GN=RAD PE=1 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 4.2e-23
Identity = 51/77 (66.23%), Postives = 65/77 (84.42%), Query Frame = 1 

Query: 63  SSHGSAS-WTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVEDVKF 122
           S+ GS   W+AK+NKAFE ALA YD+DTPDRW NVARAV G+T EEVK+HY++LVED+K+
Sbjct: 3   STRGSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKY 62

Query: 123 IESGRVPYP-YRNSGAS 138
           IESG+VP+P YR +G +
Sbjct: 63  IESGKVPFPNYRTTGGN 79

[Close]
BLAST of Cp4.1LG04g00900 vs. Swiss-Prot
Match: RADL4_ARATH (Protein RADIALIS-like 4 OS=Arabidopsis thaliana GN=RL4 PE=2 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 8.8e-21
Identity = 50/77 (64.94%), Postives = 63/77 (81.82%), Query Frame = 1 

Query: 59  MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVED 118
           MAS SS  ++SWTA+++K FE ALA++D+DTPDRW  +ARAVGGK+ EEVKRHY+LL+ D
Sbjct: 1   MAS-SSMSTSSWTAREDKQFEMALAKFDKDTPDRWQKIARAVGGKSTEEVKRHYELLLRD 60

Query: 119 VKFIESGRVPYP-YRNS 135
           V  IESGR P P YRN+
Sbjct: 61  VNDIESGRYPQPRYRNT 76

[Close]
BLAST of Cp4.1LG04g00900 vs. TrEMBL
Match: A0A0A0K344_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G169070 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 5.5e-30
Identity = 63/76 (82.89%), Postives = 72/76 (94.74%), Query Frame = 1 

Query: 59  MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVED 118
           MAS+S+HGS  WTAKQNKAFEEALA YD+DTPDRWLNVA+A+GGKTEEEVKRHYQLL+ED
Sbjct: 1   MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 119 VKFIESGRVPYPYRNS 135
           VK IESG+VP+PYR+S
Sbjct: 61  VKHIESGKVPFPYRSS 76

[Close]
BLAST of Cp4.1LG04g00900 vs. TrEMBL
Match: A0A0A0K348_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G170600 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.6e-29
Identity = 64/80 (80.00%), Postives = 71/80 (88.75%), Query Frame = 1 

Query: 59  MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVED 118
           MASMSSHGS +WT  QNKAFE+ALA YD+DTPDRWLNVA+AVGGKT EEVKRHY LLVED
Sbjct: 1   MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 119 VKFIESGRVPYPYRNSGASS 139
           VKFIESG+VP+PYR SG  +
Sbjct: 61  VKFIESGQVPFPYRTSGGGN 80

[Close]
BLAST of Cp4.1LG04g00900 vs. TrEMBL
Match: A0A0A0K3K0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G168060 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 5.2e-28
Identity = 60/80 (75.00%), Postives = 73/80 (91.25%), Query Frame = 1 

Query: 59  MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVED 118
           MASMS+HGS++WTA +NKAFE+ALA YD+DTP+RWLNVA+A+GGKTEEEVKRHYQLL+ED
Sbjct: 1   MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 119 VKFIESGRVPYPYRNSGASS 139
           V  IESG++P+PYR S  SS
Sbjct: 61  VNHIESGQIPFPYRKSTRSS 80

[Close]
BLAST of Cp4.1LG04g00900 vs. TrEMBL
Match: A0A0D2W2J5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G036700 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 7.4e-27
Identity = 59/76 (77.63%), Postives = 68/76 (89.47%), Query Frame = 1 

Query: 60  ASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVEDV 119
           +SMSS GS SWTAKQNK FE ALA YD+DTPDRW NVA+AVGGKT EEVKRHY+LLV DV
Sbjct: 4   SSMSSRGSGSWTAKQNKDFERALAVYDKDTPDRWYNVAKAVGGKTAEEVKRHYELLVADV 63

Query: 120 KFIESGRVPYPYRNSG 136
           K+IESG+VP+PYR++G
Sbjct: 64  KYIESGQVPFPYRSNG 79

[Close]
BLAST of Cp4.1LG04g00900 vs. TrEMBL
Match: B9H0R6_POPTR (Myb family transcription factor family protein OS=Populus trichocarpa GN=POPTR_0004s16270g PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.3e-26
Identity = 62/79 (78.48%), Postives = 70/79 (88.61%), Query Frame = 1 

Query: 60  ASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVEDV 119
           +S+SS GS SWTA+QNKAFE ALA YDRDTPDRW NVARAVGGKT EEVKRHY++LVEDV
Sbjct: 4   SSVSSRGSGSWTAQQNKAFERALAVYDRDTPDRWHNVARAVGGKTAEEVKRHYEILVEDV 63

Query: 120 KFIESGRVPYP-YRNSGAS 138
           K IESGRVP+P YR +GA+
Sbjct: 64  KHIESGRVPFPNYRTTGAN 82

[Close]
BLAST of Cp4.1LG04g00900 vs. TAIR10
Match: AT4G39250.1 (AT4G39250.1 RAD-like 1)

HSP 1 Score: 117.1 bits (292), Expect = 8.7e-27
Identity = 55/77 (71.43%), Postives = 65/77 (84.42%), Query Frame = 1 

Query: 60  ASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVEDV 119
           +SMSS  S SWTAKQNKAFE+ALA YD+DTP+RW NVA+ VGGKT EEVKRHY+LLV+D+
Sbjct: 4   SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDI 63

Query: 120 KFIESGRVPYP-YRNSG 136
             IE+G VP+P YR SG
Sbjct: 64  NSIENGHVPFPNYRTSG 80

[Close]
BLAST of Cp4.1LG04g00900 vs. TAIR10
Match: AT2G21650.1 (AT2G21650.1 Homeodomain-like superfamily protein)

HSP 1 Score: 111.7 bits (278), Expect = 3.7e-25
Identity = 54/79 (68.35%), Postives = 63/79 (79.75%), Query Frame = 1 

Query: 61  SMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVEDVK 120
           SMSS+GS SWT KQNKAFE ALA YD+DTPDRW NVARAVGGKT EE KR Y LLV D++
Sbjct: 5   SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIE 64

Query: 121 FIESGRVPYP-YRNSGASS 139
            IE+G VP+P Y+ +  +S
Sbjct: 65  SIENGHVPFPDYKTTTGNS 83

[Close]
BLAST of Cp4.1LG04g00900 vs. TAIR10
Match: AT2G18328.1 (AT2G18328.1 RAD-like 4)

HSP 1 Score: 101.3 bits (251), Expect = 4.9e-22
Identity = 50/77 (64.94%), Postives = 63/77 (81.82%), Query Frame = 1 

Query: 59  MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVED 118
           MAS SS  ++SWTA+++K FE ALA++D+DTPDRW  +ARAVGGK+ EEVKRHY+LL+ D
Sbjct: 1   MAS-SSMSTSSWTAREDKQFEMALAKFDKDTPDRWQKIARAVGGKSTEEVKRHYELLLRD 60

Query: 119 VKFIESGRVPYP-YRNS 135
           V  IESGR P P YRN+
Sbjct: 61  VNDIESGRYPQPRYRNT 76

[Close]
BLAST of Cp4.1LG04g00900 vs. TAIR10
Match: AT1G75250.1 (AT1G75250.1 RAD-like 6)

HSP 1 Score: 100.5 bits (249), Expect = 8.4e-22
Identity = 49/72 (68.06%), Postives = 55/72 (76.39%), Query Frame = 1 

Query: 59  MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVED 118
           MAS S    + WT  QNK FE ALA YD+DTPDRW NVA+AVGGKT EEVKRHY +LVED
Sbjct: 1   MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 119 VKFIESGRVPYP 131
           +  IE+GRVP P
Sbjct: 61  LINIETGRVPLP 72

[Close]
BLAST of Cp4.1LG04g00900 vs. TAIR10
Match: AT1G19510.1 (AT1G19510.1 RAD-like 5)

HSP 1 Score: 100.1 bits (248), Expect = 1.1e-21
Identity = 48/72 (66.67%), Postives = 55/72 (76.39%), Query Frame = 1 

Query: 59  MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVED 118
           MAS S   S+SWT+KQNK FE ALA YD+DTPDRW NVA+AVG K+ EEVKRHY +LVED
Sbjct: 1   MASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVED 60

Query: 119 VKFIESGRVPYP 131
           +  IE   VP P
Sbjct: 61  LMNIEQDLVPLP 72

[Close]
BLAST of Cp4.1LG04g00900 vs. NCBI nr
Match: gi|659092346|ref|XP_008447024.1| (PREDICTED: protein RADIALIS-like 1 [Cucumis melo])

HSP 1 Score: 139.0 bits (349), Expect = 6.1e-30
Identity = 65/77 (84.42%), Postives = 71/77 (92.21%), Query Frame = 1 

Query: 59  MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVED 118
           MASMSSHGS +WT KQNKAFE+ALA YD+DTPDRWLNVA+AVGGKT EEVKRHY LLVED
Sbjct: 1   MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 119 VKFIESGRVPYPYRNSG 136
           VKFIESG+VP+PYR SG
Sbjct: 61  VKFIESGQVPFPYRTSG 77

[Close]
BLAST of Cp4.1LG04g00900 vs. NCBI nr
Match: gi|449466805|ref|XP_004151116.1| (PREDICTED: protein RADIALIS-like 1 [Cucumis sativus])

HSP 1 Score: 138.7 bits (348), Expect = 7.9e-30
Identity = 63/76 (82.89%), Postives = 72/76 (94.74%), Query Frame = 1 

Query: 59  MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVED 118
           MAS+S+HGS  WTAKQNKAFEEALA YD+DTPDRWLNVA+A+GGKTEEEVKRHYQLL+ED
Sbjct: 1   MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 119 VKFIESGRVPYPYRNS 135
           VK IESG+VP+PYR+S
Sbjct: 61  VKHIESGKVPFPYRSS 76

[Close]
BLAST of Cp4.1LG04g00900 vs. NCBI nr
Match: gi|659092351|ref|XP_008447025.1| (PREDICTED: protein RADIALIS-like 1 [Cucumis melo])

HSP 1 Score: 137.9 bits (346), Expect = 1.3e-29
Identity = 63/76 (82.89%), Postives = 71/76 (93.42%), Query Frame = 1 

Query: 59  MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVED 118
           MASMS+HGS  WTAKQNKAFE+ALA YD+DTPDRWLNVA+A+GGKTEEEVKRHYQLL+ED
Sbjct: 1   MASMSAHGSGVWTAKQNKAFEKALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 119 VKFIESGRVPYPYRNS 135
           VK IESG+VP+PYR S
Sbjct: 61  VKHIESGKVPFPYRTS 76

[Close]
BLAST of Cp4.1LG04g00900 vs. NCBI nr
Match: gi|778725458|ref|XP_004151125.2| (PREDICTED: protein RADIALIS-like 1 [Cucumis sativus])

HSP 1 Score: 137.1 bits (344), Expect = 2.3e-29
Identity = 64/80 (80.00%), Postives = 71/80 (88.75%), Query Frame = 1 

Query: 59  MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVED 118
           MASMSSHGS +WT  QNKAFE+ALA YD+DTPDRWLNVA+AVGGKT EEVKRHY LLVED
Sbjct: 1   MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 119 VKFIESGRVPYPYRNSGASS 139
           VKFIESG+VP+PYR SG  +
Sbjct: 61  VKFIESGQVPFPYRTSGGGN 80

[Close]
BLAST of Cp4.1LG04g00900 vs. NCBI nr
Match: gi|778725452|ref|XP_011658943.1| (PREDICTED: protein RADIALIS-like 1 [Cucumis sativus])

HSP 1 Score: 132.1 bits (331), Expect = 7.4e-28
Identity = 60/80 (75.00%), Postives = 73/80 (91.25%), Query Frame = 1 

Query: 59  MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVED 118
           MASMS+HGS++WTA +NKAFE+ALA YD+DTP+RWLNVA+A+GGKTEEEVKRHYQLL+ED
Sbjct: 1   MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 119 VKFIESGRVPYPYRNSGASS 139
           V  IESG++P+PYR S  SS
Sbjct: 61  VNHIESGQIPFPYRKSTRSS 80

The following BLAST results are available for this feature:
BLAST of Cp4.1LG04g00900 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RADL1_ARATH1.5e-2571.43Protein RADIALIS-like 1 OS=Arabidopsis thaliana GN=RL1 PE=2 SV=1[more]
RADL2_ARATH6.5e-2468.35Protein RADIALIS-like 2 OS=Arabidopsis thaliana GN=RL2 PE=2 SV=1[more]
RADL3_ARATH8.5e-2469.23Protein RADIALIS-like 3 OS=Arabidopsis thaliana GN=RL3 PE=2 SV=1[more]
RAD_ANTMA4.2e-2366.23Transcription factor RADIALIS OS=Antirrhinum majus GN=RAD PE=1 SV=1[more]
RADL4_ARATH8.8e-2164.94Protein RADIALIS-like 4 OS=Arabidopsis thaliana GN=RL4 PE=2 SV=1[more]
BLAST of Cp4.1LG04g00900 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K344_CUCSA5.5e-3082.89Uncharacterized protein OS=Cucumis sativus GN=Csa_7G169070 PE=4 SV=1[more]
A0A0A0K348_CUCSA1.6e-2980.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G170600 PE=4 SV=1[more]
A0A0A0K3K0_CUCSA5.2e-2875.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G168060 PE=4 SV=1[more]
A0A0D2W2J5_GOSRA7.4e-2777.63Uncharacterized protein OS=Gossypium raimondii GN=B456_013G036700 PE=4 SV=1[more]
B9H0R6_POPTR1.3e-2678.48Myb family transcription factor family protein OS=Populus trichocarpa GN=POPTR_0... [more]
BLAST of Cp4.1LG04g00900 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G39250.18.7e-2771.43 RAD-like 1[more]
AT2G21650.13.7e-2568.35 Homeodomain-like superfamily protein[more]
AT2G18328.14.9e-2264.94 RAD-like 4[more]
AT1G75250.18.4e-2268.06 RAD-like 6[more]
AT1G19510.11.1e-2166.67 RAD-like 5[more]
BLAST of Cp4.1LG04g00900 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659092346|ref|XP_008447024.1|6.1e-3084.42PREDICTED: protein RADIALIS-like 1 [Cucumis melo][more]
gi|449466805|ref|XP_004151116.1|7.9e-3082.89PREDICTED: protein RADIALIS-like 1 [Cucumis sativus][more]
gi|659092351|ref|XP_008447025.1|1.3e-2982.89PREDICTED: protein RADIALIS-like 1 [Cucumis melo][more]
gi|778725458|ref|XP_004151125.2|2.3e-2980.00PREDICTED: protein RADIALIS-like 1 [Cucumis sativus][more]
gi|778725452|ref|XP_011658943.1|7.4e-2875.00PREDICTED: protein RADIALIS-like 1 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR017884SANT_dom
IPR009057Homeobox-like_sf
IPR001005SANT/Myb
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005634 nucleus
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG04g00900.1Cp4.1LG04g00900.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001005SANT/Myb domainPFAMPF00249Myb_DNA-bindingcoord: 69..114
score: 3.
IPR001005SANT/Myb domainSMARTSM00717santcoord: 66..118
score: 2.
IPR009057Homeodomain-likeGENE3DG3DSA:1.10.10.60coord: 68..120
score: 8.
IPR009057Homeodomain-likeunknownSSF46689Homeodomain-likecoord: 69..122
score: 4.64
IPR017884SANT domainPROFILEPS51293SANTcoord: 65..120
score: 9
NoneNo IPR availablePANTHERPTHR24078DNAJ HOMOLOG SUBFAMILY C MEMBERcoord: 56..129
score: 9.9
NoneNo IPR availablePANTHERPTHR24078:SF177PROTEIN DNJ-23-RELATEDcoord: 56..129
score: 9.9

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG04g00900Cucsa.377630Cucumber (Gy14) v1cgycpeB0994
Cp4.1LG04g00900Cucsa.240590Cucumber (Gy14) v1cgycpeB0645
Cp4.1LG04g00900CmaCh11G010940Cucurbita maxima (Rimu)cmacpeB147
Cp4.1LG04g00900CmaCh19G006700Cucurbita maxima (Rimu)cmacpeB540
Cp4.1LG04g00900CmoCh11G011190Cucurbita moschata (Rifu)cmocpeB127
Cp4.1LG04g00900CmoCh19G006820Cucurbita moschata (Rifu)cmocpeB495
Cp4.1LG04g00900Cla015917Watermelon (97103) v1cpewmB667
Cp4.1LG04g00900MELO3C012500Melon (DHL92) v3.5.1cpemeB605
Cp4.1LG04g00900ClCG02G004920Watermelon (Charleston Gray)cpewcgB591
Cp4.1LG04g00900CSPI07G11740Wild cucumber (PI 183967)cpecpiB700
Cp4.1LG04g00900Lsi11G011060Bottle gourd (USVL1VR-Ls)cpelsiB532
Cp4.1LG04g00900MELO3C012500.2Melon (DHL92) v3.6.1cpemedB716
Cp4.1LG04g00900CsaV3_7G023660Cucumber (Chinese Long) v3cpecucB0871
Cp4.1LG04g00900Bhi05G001102Wax gourdcpewgoB0857
Cp4.1LG04g00900CsGy7G010930Cucumber (Gy14) v2cgybcpeB972
Cp4.1LG04g00900CsGy7G000030Cucumber (Gy14) v2cgybcpeB970
Cp4.1LG04g00900Carg24682Silver-seed gourdcarcpeB0254
Cp4.1LG04g00900Carg19407Silver-seed gourdcarcpeB0438
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG04g00900Cp4.1LG15g05490Cucurbita pepo (Zucchini)cpecpeB270
Cp4.1LG04g00900Cp4.1LG16g02320Cucurbita pepo (Zucchini)cpecpeB307
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG04g00900Cucurbita pepo (Zucchini)cpecpeB496
Cp4.1LG04g00900Cucurbita moschata (Rifu)cmocpeB591