MELO3C023292.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C023292.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
Descriptionprotein RADIALIS-like 2
Locationchr11 : 995710 .. 998100 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACCCCTTTAAATTAATTTTAATTACCAGTTTTTGCCCCTCAACAATGGCTTCCATTTCCTCTTCCTCTCACGACTCTGCCTCCTCTTCTTGGACTCCTAACCAAAACAAAGCCTTCGAAAGGGCTTTGGCTGTCTTTGACAAAGACACCCCTGATCGCTGGCTCAATGTCGCCAACGCCGTCGGCGGTGGCAAGACCCCTGACGAAGTCAAGCGGCATTTCGACCGTCTCGTCGAAGATGTCAAACACATTGAATCTGGCCGCGTTCCTTTCCCTAAATACACCTCCTCCTCCTCCTCCTCCTCCGCCCCTAGAACCTCCAGTAATGCTAACATCAAAGACCAAGAACAAAGGTACCTCTCGGCCTTCATTTTTTCTTTTTCTAAGTTTTAACCTTTCGAAATATTACATATTTCTCAACTACTAAACTACATTTTTAAAGCTTTTTTACGACAAAAAAAGTCCAACCTCTAAGTCGCTTTCAACTCACTTTTATTTTGGTTCGCTTTCGAGATTCTCTCTTCATATGTATCTCTGCATAGTTTTTAATCTTTTTGATCTTCTCATCTCCACAATGTTTCTTTTTTTTCTTTTCTTCTTGAAATTCCTTAGAGCTTCCTTTTAATGCCTTACAAAAAGCTATACATCTTTTTTATCACCTCCATGTCCTTCCCCTCTCTCATGTGACTTTCCTATGTATTTTCAAGTTTTTCTTTTTTATTTCTTAACCAAACTATAATATAAACAAACCCAATTAAAAAGAATCAAATTGATTAGAGTTTTTATTTCAAAATTAAAAAACAATACAAGTTGCATCGAGTTTTCCTACCTATCTCCTTCAATCACGTAGCAAAAAAAAAGAAACACGAAAAATTGTTATCTCGTAACAATGGATTGAGCTACACAAAGATAAGTAGGTCGGACCTTTACTCTATTTATAATATTTTAATTAAAGAAAAGGGTATTTGAAAGTTGGTTTTTTTTCGAGGATAATGGGTTCCAGAAAAAGAGAAAAGCATGCAATCCAATCATACCTCAATTGGTAAATGCAATGTTTTCTTTTTATATAAAAATAAAAGGAAAAAAAGTCAACAGTTTACGAGAAACCCAGCCTCGTGCCGGTCACGTGCCTTGCTCCTACAAATAGGGCTGATTAATTAATTAATACCAATAATTGCATTCTTAATATTATAATTAACCCTCATAATTTATGTATTAATTATTGGCGTTATCTAATCTTATAACTTAATTATTTTTTTAATGTTGATATTTTGTTTTCCTGACAAATATCCAACTTGTCGGATTGTATTCTAACAATCCCCATTACTCCACAAAAACAATACACATCTTCTTTTTTCTTTTTTCTTTTTTTCTTTTTTCTTTCCATTTTTGGGAGCTTTTTATTCTTTAATCAAAACAAAAAAAATAATTCACCCAAACTTTCAAATTAAGAAATATTTTCTCCCAAAAAAATTTTTAGAAGTTAAAAAAAAATGAAAAATGAATAAAATTTATATATAAAAAGAAAAAAGGTATAGCCAAGAACTTATAATGAAAATCCATATGAGTAACTGAGGAGTCTAATCTATAGCAAATTAAAAGAAAAGAAATATGATCTTAATTTAAATAATTGAGATCTTATTTGATACGATTTTATTTCTAATTTTTTTAGTTTTCGTTCACTGTTTATTGTTTTCATTTCATAAACTAAAAGAAAAAGAAAAGAAAAAGTCATTGTCTTGATTTAAATCACTAAGGTCCTTTTTTTTTATGACGTACATCCCTTTGATTATATTTATGTATAAATAAGAATAATGATCTTTTTGTCGTGTTTGCTTGTCCTTCTTGTACTATTAGCCCTCCAAGTAATTTTTAAAAGATATAAAAAATATCTACTTTGGTCTTTGAATTTGAAAAATATATCTATTTTAGTTATTACAATTATTTTATTGTCAAATGTTACTCATTCTTTATCTATTTAGCGTATGGAAATATCACTGCATATTTGAAGTCATGTCATCATTTGTCAAATAATTGAGATTGAAGCAATGTTAGAGATCAAAATAGTTATGGTTGAATATGAAAATTAAATTAAGGTTTTGAAAATTGCAATCATGGGCCTAACTCATTTCATTTTTGCAGGATGAGAAACATGAAACTCCATTAAATTGGTTAAAATTGAAGGCAAATGGATGGGATTAAGAAGAATGAAAAAGTGGATAGGTGGTTGCTGTTTTTGCGCCTAAGATAACAAAAAAGGAATTAATGTAGCCAAATTTGCAATTTATGTGTTTTTTTTTCTTCCTCTTGAAAGTGTATTTGCCCAACTAAAAAGCTAATCAATGTAGAAGAATCAATTTGATTTATGTTTCTTCCATCCACTAATTTCCCC

mRNA sequence

ACCCCTTTAAATTAATTTTAATTACCAGTTTTTGCCCCTCAACAATGGCTTCCATTTCCTCTTCCTCTCACGACTCTGCCTCCTCTTCTTGGACTCCTAACCAAAACAAAGCCTTCGAAAGGGCTTTGGCTGTCTTTGACAAAGACACCCCTGATCGCTGGCTCAATGTCGCCAACGCCGTCGGCGGTGGCAAGACCCCTGACGAAGTCAAGCGGCATTTCGACCGTCTCGTCGAAGATGTCAAACACATTGAATCTGGCCGCGTTCCTTTCCCTAAATACACCTCCTCCTCCTCCTCCTCCTCCGCCCCTAGAACCTCCAGTAATGCTAACATCAAAGACCAAGAACAAAGGATGAGAAACATGAAACTCCATTAAATTGGTTAAAATTGAAGGCAAATGGATGGGATTAAGAAGAATGAAAAAGTGGATAGGTGGTTGCTGTTTTTGCGCCTAAGATAACAAAAAAGGAATTAATGTAGCCAAATTTGCAATTTATGTGTTTTTTTTTCTTCCTCTTGAAAGTGTATTTGCCCAACTAAAAAGCTAATCAATGTAGAAGAATCAATTTGATTTATGTTTCTTCCATCCACTAATTTCCCC

Coding sequence (CDS)

ATGGCTTCCATTTCCTCTTCCTCTCACGACTCTGCCTCCTCTTCTTGGACTCCTAACCAAAACAAAGCCTTCGAAAGGGCTTTGGCTGTCTTTGACAAAGACACCCCTGATCGCTGGCTCAATGTCGCCAACGCCGTCGGCGGTGGCAAGACCCCTGACGAAGTCAAGCGGCATTTCGACCGTCTCGTCGAAGATGTCAAACACATTGAATCTGGCCGCGTTCCTTTCCCTAAATACACCTCCTCCTCCTCCTCCTCCTCCGCCCCTAGAACCTCCAGTAATGCTAACATCAAAGACCAAGAACAAAGGATGAGAAACATGAAACTCCATTAA

Protein sequence

MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSAPRTSSNANIKDQEQRMRNMKLH
Homology
[Close]
BLAST of MELO3C023292.2 vs. NCBI nr
Match: XP_008460938.1 (PREDICTED: protein RADIALIS-like 2 [Cucumis melo])

HSP 1 Score: 175.3 bits (443), Expect = 1.2e-40
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0 

Query: 1   MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFD 60
           MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFD
Sbjct: 1   MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFD 60

Query: 61  RLVEDVKHIESGRVPFPKYTSXXXXXXXXXXXXXXXXXXXXXRMRNMKLH 111
           RLVEDVKHIESGRVPFPKYTSXXXXXXXXXXXXXXXXXXXXXRMRNMKLH
Sbjct: 61  RLVEDVKHIESGRVPFPKYTSXXXXXXXXXXXXXXXXXXXXXRMRNMKLH 110

[Close]
BLAST of MELO3C023292.2 vs. NCBI nr
Match: XP_004148844.1 (PREDICTED: transcription factor RADIALIS-like [Cucumis sativus] >KGN61794.1 MYB transcription factor MYB142 [Cucumis sativus])

HSP 1 Score: 153.7 bits (387), Expect = 3.7e-34
Identity = 83/110 (75.45%), Postives = 83/110 (75.45%), Query Frame = 0 

Query: 1   MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFD 60
           MASISSS     SSSWTPNQNKAFERALAVFDKDTPDRWLNVA AVGGGKTPDEVKRHFD
Sbjct: 1   MASISSS-----SSSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFD 60

Query: 61  RLVEDVKHIESGRVPFPKYTSXXXXXXXXXXXXXXXXXXXXXRMRNMKLH 111
           RLVEDVKHIESGRVPFPKYTS                     RMRNMKLH
Sbjct: 61  RLVEDVKHIESGRVPFPKYTS----SSSSPTTSNANIKDQEQRMRNMKLH 101

[Close]
BLAST of MELO3C023292.2 vs. NCBI nr
Match: XP_023513343.1 (protein RADIALIS-like 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 139.0 bits (349), Expect = 9.4e-30
Identity = 69/81 (85.19%), Postives = 71/81 (87.65%), Query Frame = 0 

Query: 1  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFD 60
          MAS+SSS H   SSSWTP QNKAFERALAVFDKDTPDRWLNVA AVGGGKTPDEVK HFD
Sbjct: 1  MASMSSSHH---SSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFD 60

Query: 61 RLVEDVKHIESGRVPFPKYTS 82
           LVEDVKHIESG VPFP Y+S
Sbjct: 61 LLVEDVKHIESGHVPFPNYSS 78

[Close]
BLAST of MELO3C023292.2 vs. NCBI nr
Match: XP_022986646.1 (protein RADIALIS-like 2 [Cucurbita maxima])

HSP 1 Score: 135.6 bits (340), Expect = 1.0e-28
Identity = 67/81 (82.72%), Postives = 70/81 (86.42%), Query Frame = 0 

Query: 1  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFD 60
          MAS+SSS H   SSSWTP +NKAFERALAVFDKDTPDRWLNVA AVGGGKTPDEVK HFD
Sbjct: 1  MASMSSSHH---SSSWTPKENKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFD 60

Query: 61 RLVEDVKHIESGRVPFPKYTS 82
           LVEDVKHIE G VPFP Y+S
Sbjct: 61 LLVEDVKHIEFGHVPFPNYSS 78

[Close]
BLAST of MELO3C023292.2 vs. NCBI nr
Match: XP_022944318.1 (protein RADIALIS-like 2 [Cucurbita moschata])

HSP 1 Score: 134.8 bits (338), Expect = 1.8e-28
Identity = 67/81 (82.72%), Postives = 70/81 (86.42%), Query Frame = 0 

Query: 1  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFD 60
          MAS++SS     SSSWTP QNKAFERALAVFDKDTPDRWLNVA AVGGGKTPDEVK HFD
Sbjct: 1  MASMASSHR---SSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFD 60

Query: 61 RLVEDVKHIESGRVPFPKYTS 82
           LVEDVKHIESG VPFP Y+S
Sbjct: 61 LLVEDVKHIESGHVPFPNYSS 78

[Close]
BLAST of MELO3C023292.2 vs. TAIR10
Match: AT2G21650.1 (Homeodomain-like superfamily protein)

HSP 1 Score: 101.3 bits (251), Expect = 3.9e-22
Identity = 53/79 (67.09%), Postives = 61/79 (77.22%), Query Frame = 0 

Query: 1  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFD 60
          MAS S SS+   S SWT  QNKAFERALAV+D+DTPDRW NVA AV GGKTP+E KR +D
Sbjct: 1  MASGSMSSY--GSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAV-GGKTPEEAKRQYD 60

Query: 61 RLVEDVKHIESGRVPFPKY 80
           LV D++ IE+G VPFP Y
Sbjct: 61 LLVRDIESIENGHVPFPDY 76

[Close]
BLAST of MELO3C023292.2 vs. TAIR10
Match: AT1G75250.1 (RAD-like 6)

HSP 1 Score: 99.0 bits (245), Expect = 2.0e-21
Identity = 50/74 (67.57%), Postives = 60/74 (81.08%), Query Frame = 0 

Query: 6  SSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVED 65
          +S+  S+ S WT +QNK FERALAV+DKDTPDRW NVA AV GGKT +EVKRH+D LVED
Sbjct: 2  ASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAV-GGKTVEEVKRHYDILVED 61

Query: 66 VKHIESGRVPFPKY 80
          + +IE+GRVP P Y
Sbjct: 62 LINIETGRVPLPNY 74

[Close]
BLAST of MELO3C023292.2 vs. TAIR10
Match: AT1G19510.1 (RAD-like 5)

HSP 1 Score: 98.6 bits (244), Expect = 2.5e-21
Identity = 50/74 (67.57%), Postives = 58/74 (78.38%), Query Frame = 0 

Query: 6  SSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVED 65
          +SS  S+SSSWT  QNK FERALAV+DKDTPDRW NVA AV G K+ +EVKRH+D LVED
Sbjct: 2  ASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAV-GSKSAEEVKRHYDILVED 61

Query: 66 VKHIESGRVPFPKY 80
          + +IE   VP PKY
Sbjct: 62 LMNIEQDLVPLPKY 74

[Close]
BLAST of MELO3C023292.2 vs. TAIR10
Match: AT4G39250.1 (RAD-like 1)

HSP 1 Score: 97.1 bits (240), Expect = 7.4e-21
Identity = 46/75 (61.33%), Postives = 57/75 (76.00%), Query Frame = 0 

Query: 5  SSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVE 64
          SSS    +S SWT  QNKAFE+ALA +D+DTP+RW NVA  V GGKT +EVKRH++ LV+
Sbjct: 3  SSSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVV-GGKTTEEVKRHYELLVQ 62

Query: 65 DVKHIESGRVPFPKY 80
          D+  IE+G VPFP Y
Sbjct: 63 DINSIENGHVPFPNY 76

[Close]
BLAST of MELO3C023292.2 vs. TAIR10
Match: AT2G18328.1 (RAD-like 4)

HSP 1 Score: 88.2 bits (217), Expect = 3.4e-18
Identity = 42/73 (57.53%), Postives = 54/73 (73.97%), Query Frame = 0 

Query: 7  SSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDV 66
          +S   ++SSWT  ++K FE ALA FDKDTPDRW  +A AV GGK+ +EVKRH++ L+ DV
Sbjct: 2  ASSSMSTSSWTAREDKQFEMALAKFDKDTPDRWQKIARAV-GGKSTEEVKRHYELLLRDV 61

Query: 67 KHIESGRVPFPKY 80
            IESGR P P+Y
Sbjct: 62 NDIESGRYPQPRY 73

[Close]
BLAST of MELO3C023292.2 vs. Swiss-Prot
Match: sp|Q58FS3|RAD_ANTMA (Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.2e-21
Identity = 45/64 (70.31%), Postives = 56/64 (87.50%), Query Frame = 0 

Query: 16 WTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVP 75
          W+  +NKAFERALAV+DKDTPDRW NVA AV  G+TP+EVK+H++ LVED+K+IESG+VP
Sbjct: 11 WSAKENKAFERALAVYDKDTPDRWANVARAV-EGRTPEEVKKHYEILVEDIKYIESGKVP 70

Query: 76 FPKY 80
          FP Y
Sbjct: 71 FPNY 73

[Close]
BLAST of MELO3C023292.2 vs. Swiss-Prot
Match: sp|Q9SIJ5|RADL2_ARATH (Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 7.1e-21
Identity = 53/79 (67.09%), Postives = 61/79 (77.22%), Query Frame = 0 

Query: 1  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFD 60
          MAS S SS+   S SWT  QNKAFERALAV+D+DTPDRW NVA AV GGKTP+E KR +D
Sbjct: 1  MASGSMSSY--GSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAV-GGKTPEEAKRQYD 60

Query: 61 RLVEDVKHIESGRVPFPKY 80
           LV D++ IE+G VPFP Y
Sbjct: 61 LLVRDIESIENGHVPFPDY 76

[Close]
BLAST of MELO3C023292.2 vs. Swiss-Prot
Match: sp|Q1A173|RADL6_ARATH (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 3.5e-20
Identity = 50/74 (67.57%), Postives = 60/74 (81.08%), Query Frame = 0 

Query: 6  SSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVED 65
          +S+  S+ S WT +QNK FERALAV+DKDTPDRW NVA AV GGKT +EVKRH+D LVED
Sbjct: 2  ASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAV-GGKTVEEVKRHYDILVED 61

Query: 66 VKHIESGRVPFPKY 80
          + +IE+GRVP P Y
Sbjct: 62 LINIETGRVPLPNY 74

[Close]
BLAST of MELO3C023292.2 vs. Swiss-Prot
Match: sp|Q8GW75|RADL5_ARATH (Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 4.6e-20
Identity = 50/74 (67.57%), Postives = 58/74 (78.38%), Query Frame = 0 

Query: 6  SSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVED 65
          +SS  S+SSSWT  QNK FERALAV+DKDTPDRW NVA AV G K+ +EVKRH+D LVED
Sbjct: 2  ASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAV-GSKSAEEVKRHYDILVED 61

Query: 66 VKHIESGRVPFPKY 80
          + +IE   VP PKY
Sbjct: 62 LMNIEQDLVPLPKY 74

[Close]
BLAST of MELO3C023292.2 vs. Swiss-Prot
Match: sp|F4JVB8|RADL1_ARATH (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.3e-19
Identity = 46/75 (61.33%), Postives = 57/75 (76.00%), Query Frame = 0 

Query: 5  SSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVE 64
          SSS    +S SWT  QNKAFE+ALA +D+DTP+RW NVA  V GGKT +EVKRH++ LV+
Sbjct: 3  SSSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVV-GGKTTEEVKRHYELLVQ 62

Query: 65 DVKHIESGRVPFPKY 80
          D+  IE+G VPFP Y
Sbjct: 63 DINSIENGHVPFPNY 76

[Close]
BLAST of MELO3C023292.2 vs. TrEMBL
Match: tr|A0A1S3CDK8|A0A1S3CDK8_CUCME (protein RADIALIS-like 2 OS=Cucumis melo OX=3656 GN=LOC103499673 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 7.8e-41
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0 

Query: 1   MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFD 60
           MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFD
Sbjct: 1   MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFD 60

Query: 61  RLVEDVKHIESGRVPFPKYTSXXXXXXXXXXXXXXXXXXXXXRMRNMKLH 111
           RLVEDVKHIESGRVPFPKYTSXXXXXXXXXXXXXXXXXXXXXRMRNMKLH
Sbjct: 61  RLVEDVKHIESGRVPFPKYTSXXXXXXXXXXXXXXXXXXXXXRMRNMKLH 110

[Close]
BLAST of MELO3C023292.2 vs. TrEMBL
Match: tr|A0A0A0LL58|A0A0A0LL58_CUCSA (MYB transcription factor MYB142 OS=Cucumis sativus OX=3659 GN=Csa_2G247060 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 2.4e-34
Identity = 83/110 (75.45%), Postives = 83/110 (75.45%), Query Frame = 0 

Query: 1   MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFD 60
           MASISSS     SSSWTPNQNKAFERALAVFDKDTPDRWLNVA AVGGGKTPDEVKRHFD
Sbjct: 1   MASISSS-----SSSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFD 60

Query: 61  RLVEDVKHIESGRVPFPKYTSXXXXXXXXXXXXXXXXXXXXXRMRNMKLH 111
           RLVEDVKHIESGRVPFPKYTS                     RMRNMKLH
Sbjct: 61  RLVEDVKHIESGRVPFPKYTS----SSSSPTTSNANIKDQEQRMRNMKLH 101

[Close]
BLAST of MELO3C023292.2 vs. TrEMBL
Match: tr|A0A1S2Y7F5|A0A1S2Y7F5_CICAR (protein RADIALIS-like 3 OS=Cicer arietinum OX=3827 GN=LOC101499379 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.3e-24
Identity = 56/74 (75.68%), Postives = 65/74 (87.84%), Query Frame = 0 

Query: 6  SSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVED 65
          +SS  SAS SW+  +NKAFERALAVFDKDTPDRW NVA+AVGGGKT DEVKRH++ L+ D
Sbjct: 2  ASSSMSASGSWSTKENKAFERALAVFDKDTPDRWSNVAHAVGGGKTADEVKRHYEHLLRD 61

Query: 66 VKHIESGRVPFPKY 80
          V+HIESG+VPFPKY
Sbjct: 62 VRHIESGQVPFPKY 75

[Close]
BLAST of MELO3C023292.2 vs. TrEMBL
Match: tr|A0A2P4KGL3|A0A2P4KGL3_QUESU (Transcription factor radialis OS=Quercus suber OX=58331 GN=CFP56_47155 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 8.7e-24
Identity = 58/74 (78.38%), Postives = 65/74 (87.84%), Query Frame = 0 

Query: 6  SSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVED 65
          +SS  S+S SWT  +NKAFERALAV+DKDTPDRW NVA AV GGKTP+EVKRH++ LVED
Sbjct: 2  ASSSMSSSDSWTAKENKAFERALAVYDKDTPDRWHNVAKAV-GGKTPEEVKRHYELLVED 61

Query: 66 VKHIESGRVPFPKY 80
          VKHIESGRVPFPKY
Sbjct: 62 VKHIESGRVPFPKY 74

[Close]
BLAST of MELO3C023292.2 vs. TrEMBL
Match: tr|A0A2N9HQL9|A0A2N9HQL9_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS41932 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.1e-23
Identity = 58/75 (77.33%), Postives = 64/75 (85.33%), Query Frame = 0 

Query: 5  SSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVE 64
          SSS    +S SWT  +NKAFERALAV+DKDTPDRW NVA AV GGKTP+EVKRH++ LVE
Sbjct: 3  SSSLSSQSSDSWTAKENKAFERALAVYDKDTPDRWHNVAKAV-GGKTPEEVKRHYELLVE 62

Query: 65 DVKHIESGRVPFPKY 80
          DVKHIESGRVPFPKY
Sbjct: 63 DVKHIESGRVPFPKY 76

The following BLAST results are available for this feature:
BLAST of MELO3C023292.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008460938.11.2e-40100.00PREDICTED: protein RADIALIS-like 2 [Cucumis melo][more]
XP_004148844.13.7e-3475.45PREDICTED: transcription factor RADIALIS-like [Cucumis sativus] >KGN61794.1 MYB ... [more]
XP_023513343.19.4e-3085.19protein RADIALIS-like 2 [Cucurbita pepo subsp. pepo][more]
XP_022986646.11.0e-2882.72protein RADIALIS-like 2 [Cucurbita maxima][more]
XP_022944318.11.8e-2882.72protein RADIALIS-like 2 [Cucurbita moschata][more]
BLAST of MELO3C023292.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G21650.13.9e-2267.09Homeodomain-like superfamily protein[more]
AT1G75250.12.0e-2167.57RAD-like 6[more]
AT1G19510.12.5e-2167.57RAD-like 5[more]
AT4G39250.17.4e-2161.33RAD-like 1[more]
AT2G18328.13.4e-1857.53RAD-like 4[more]
BLAST of MELO3C023292.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q58FS3|RAD_ANTMA3.2e-2170.31Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1[more]
sp|Q9SIJ5|RADL2_ARATH7.1e-2167.09Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1[more]
sp|Q1A173|RADL6_ARATH3.5e-2067.57Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1[more]
sp|Q8GW75|RADL5_ARATH4.6e-2067.57Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1[more]
sp|F4JVB8|RADL1_ARATH1.3e-1961.33Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1[more]
BLAST of MELO3C023292.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CDK8|A0A1S3CDK8_CUCME7.8e-41100.00protein RADIALIS-like 2 OS=Cucumis melo OX=3656 GN=LOC103499673 PE=4 SV=1[more]
tr|A0A0A0LL58|A0A0A0LL58_CUCSA2.4e-3475.45MYB transcription factor MYB142 OS=Cucumis sativus OX=3659 GN=Csa_2G247060 PE=4 ... [more]
tr|A0A1S2Y7F5|A0A1S2Y7F5_CICAR2.3e-2475.68protein RADIALIS-like 3 OS=Cicer arietinum OX=3827 GN=LOC101499379 PE=4 SV=1[more]
tr|A0A2P4KGL3|A0A2P4KGL3_QUESU8.7e-2478.38Transcription factor radialis OS=Quercus suber OX=58331 GN=CFP56_47155 PE=4 SV=1[more]
tr|A0A2N9HQL9|A0A2N9HQL9_FAGSY1.1e-2377.33Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS41932 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR009057Homeobox-like_sf
IPR001005SANT/Myb
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
cellular_component GO:0000785 chromatin
molecular_function GO:0003677 DNA binding
molecular_function GO:0003682 chromatin binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C023292.2.1MELO3C023292.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001005SANT/Myb domainSMARTSM00717santcoord: 12..65
e-value: 4.6E-4
score: 29.5
NoneNo IPR availableGENE3DG3DSA:1.10.10.60coord: 7..76
e-value: 1.6E-20
score: 74.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 76..100
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 74..110
NoneNo IPR availablePANTHERPTHR43952FAMILY NOT NAMEDcoord: 6..109
NoneNo IPR availablePANTHERPTHR43952:SF14PROTEIN RADIALIS-LIKE 1-RELATEDcoord: 6..109
IPR009057Homeobox-like domain superfamilySUPERFAMILYSSF46689Homeodomain-likecoord: 14..71

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C023292.2Csa2G247060Cucumber (Chinese Long) v2cumedB081
MELO3C023292.2CSPI02G12200Wild cucumber (PI 183967)cpimedB081
MELO3C023292.2Cucsa.109620Cucumber (Gy14) v1cgymedB148
MELO3C023292.2CmaCh20G008500Cucurbita maxima (Rimu)cmamedB580
MELO3C023292.2CmaCh02G003970Cucurbita maxima (Rimu)cmamedB628
MELO3C023292.2CmoCh20G008590Cucurbita moschata (Rifu)cmomedB568
MELO3C023292.2CmoCh02G004030Cucurbita moschata (Rifu)cmomedB617
MELO3C023292.2Lsi10G003670Bottle gourd (USVL1VR-Ls)lsimedB047
MELO3C023292.2Cp4.1LG16g02320Cucurbita pepo (Zucchini)cpemedB293
MELO3C023292.2CsGy2G012190Cucumber (Gy14) v2cgybmedB074
MELO3C023292.2Cla016559Watermelon (97103) v1medwmB130
MELO3C023292.2ClCG11G004400Watermelon (Charleston Gray)medwcgB080
MELO3C023292.2Cla97C11G211150Watermelon (97103) v2medwmbB082
MELO3C023292.2Cla97C02G031880Watermelon (97103) v2medwmbB105
MELO3C023292.2Bhi10G001619Wax gourdmedwgoB133
MELO3C023292.2Bhi05G001105Wax gourdmedwgoB112
MELO3C023292.2Carg22945Silver-seed gourdcarmedB0886
MELO3C023292.2Carg19406Silver-seed gourdcarmedB0329
MELO3C023292.2CsaV3_2G014710Cucumber (Chinese Long) v3cucmedB089
MELO3C023292.2CsaV3_7G000010Cucumber (Chinese Long) v3cucmedB518
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
MELO3C023292.2MELO3C012498.2Melon (DHL92) v3.6.1medmedB041
The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C023292.2Cucurbita pepo (Zucchini)cpemedB253
MELO3C023292.2Cucurbita pepo (Zucchini)cpemedB786
MELO3C023292.2Bottle gourd (USVL1VR-Ls)lsimedB090
MELO3C023292.2Watermelon (Charleston Gray)medwcgB106
MELO3C023292.2Watermelon (97103) v1medwmB124