CsGy2G016990 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy2G016990
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Nucleic acid-binding%2C OB-fold-like protein
Location	Chr2 : 27243945 .. 27249670 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTGCGAAGCCAAGCTGGCATATGTGCAGAAATGTTGATAATCTCTCAGGCAAAGTTCCAAAAGAGTGGTACTTCCCCAGCAAGTCATTTCTTACGGTTCTTTGGGTAAGAACCATTCATTCACTTTGAGAAGCATTTTATGAGGTAGAAGTCTCTTTGAGAAATGCGTAAGGTGGAAAATTGGTAATGGTAGGCACATCATCATAGATGAGATAAATGACTTTTTCATGAAGATTCGGGAGGTTCAATGTTGGTTAATGATGATTTTAAGGGGATAGAGAGTTTTGTGCCTATTGATTCAAGTGGAAATTGAAATGAACATTTAATAAAATCTTATTTCATCTAGACGGATGTCATTTCTATTATTATTATTTTTTTAAGGAATCTCGAATATAATTTTTGGTGGTTTTGAGTTCTAAAGGCATGTTTTTTTTTAAAGAAAATTGCTTATTACCTTAGCATGGGTGCTAGAGATTCTTTTGAGGCCTCTTCATCAAATCAGAAAAATCAAAAGAAGAGATGGAAAGTTCTTTGGAATTCAGAGCCCTCCCTAAAACAAAAATCTGTGCATGGAGAATTTCAAAATATGTTATTTCCTTCAAGTTGAATTTATAGAGGAAGGGAATCTCTAGCGATCATTGTTGTCTCTTCTGCAAGAATTGTGAGAAGAAGTGCAAGTCCTTCTACGTCCAAAGGAAAGGAGGTTCAAAGATTTGGAATCATTTTTTCATCCTTATGGTGGCCCATTTTTTATTGCAAAAATAGTGAGGATCCTCTGTTGTTGTACGAATGATATTAAGAAGATTATTTTTTATTTGGTGGGTGAATTTGGTTGGGTTGAAATTGGTGGGTTTTGAGAACAACCTCTTCTAGTTAGAATTTTGTATTAATTATGCGTGAAATGCATGTCAAGTTACTATTTGTGGGTGCATCCTCCCCGTAATTAAAAATTAAGTGTTGATGCTTCTTGGTGTGATAATGTTGAGTGGAATGGTGCGAACTAGATTATTCGTGGGCTCGAGTCCTTGATCGAAGTGGACTTCAAAAGTTGTATAAACACTAAACGTGGGAGCTTTGTTGATGCATTTCGAGTATTTTGGTGCCATCGGTGACTAAAAATCTAGCTCATACGACACTATTTATGCTTTGTTGAACCTGGATCATGATCTGTTTGTGTTATGAATCTTTCTTGTAATGTTTGTATGTTAGCTAATACCTTCAAATCTTTCTTGCAATGTTCGTACGTTAGCTAGTTTCGCATTTTTTTGGGAAAGATATTTTCGCTTTTGTCTTCTCTTTTTTGTTGTGGGTAGTTGTGGTTGCAGTTGTTCCCTAAAAAAATAATTTTCCCATTATTTTAAACGATAAAAGTTAAAACGACTTGAATCTTTTGCCAATTTTATTTTTTGAAACCCCGAGTTACAGCATCGAAGGTTAAATTTACGGGTCAGACACGTGGTCGATCACGATTAAAGTCCTCTGGCGATCAATAATCGACGGTTGATATTTTCACAGCAACTTTATTTCTTTCCTCGAAGCTTGAGTTTGACGGCTACGTTTCTCAAATCAGATCGGCTTCCCTTTTCCCCCTTCGTCTTTGCCTCCGTCCACCACTGGTAAAAGGTGATTTCTAAACCCTAAAATTTCAGCTTCGTTTATTCTTATACCTTTTATTTTCTAATTTGTATTTCTCCTCGCTTCTCTAATTTTATGGGCACTCAGGTTGCGATTTTGTGGTAATCGTTTGTTTTGCATATTCTTTTAATGATTCTCATTTAATACTAATTTACGACATTCGAGTGTGAAATTTTATATAGAGAATGATGAGAGGTACTTGCTGAAAATCAAATTCGATGACTTAATACTATATTTTGTTTTTAGGTTTAAGGATGCTAATAAGCATCGTTTTAGTACGCTCCATTTCCTTAAGTCCCACATTAAGCCTCTAGTTGTTTGATTATCTTTCATTTGATTCACGAAAATTTTCGGAAAGACAAGTTATGAAAAACTATTTATGTCGTTGGATGTGATAATTAGCATCGAGATTAGTCGGAGGTGCTCGGAGATTTGACGATATTCAAAATATAAATAATAATTTGGCACTTTGCTTTTCAATCTTATTGTGTGTTTCGTTGAATCGACAATTTGAATTTTTTGTCCATTATCTATTTATTTTCTGTCAGTCATGAATATTTTATCAATCCCTGGCGTTCCATCCACCTCGATGATATACTGATAGCGTGTGTGTGTGCGTTTTTAAAAAAATCACAACTTCATTCTGTTATCTAACTGTATTCTTATAGACTACATGTTGTCTAACTGTTTTCTTATTGTTTGTTATTGGCACAATTAGGGATTAGGTATTCGTATTCGGGGAAATGGCAGAATCAAAACCAGGACTAAGGAAACCAGTATTTACCAAGGTTGACCAACTTCGGCCAGGCACCAGTGGCCATACTCTTACAGTCAAAGTTGTGAATACGAAGATGGTATTGCAGAAGGGTCGTCCTGATGGTCCTCAAGCCCGTCAGATGCGAATTGCCGAATGCTTAGTGGGTGATGAAACTGGAATGATCATATTTACCGCCAGAAATGATCAAGGTAAATTTCCACAATATTTGAGGAGCCTGCACCATTTGTGTTTATTTGTATCTTGTATGAAGCATGCGAACTTTCTTCTTTATGCTTACTTCTGTACATAATACTAAATATTTGTCGTTAGTTAGGTTCTTTATATCCACCTGCTGCTGGTGCATGCAAGAGTTTTCATAACTGATTTGTCTCACCCCCTGTCCTCAATGTATTTACATATCTCACTGTAAAAAGTTGTAAGCTGTTATGATATATCAACTTCCTACTAGCAATATTTCATAAAGGTTGGAGACATTTTATTGTTATAAAATCGTGGACCTTTCCTTTTCAGACAAGAAACTAGACTTTATCTAAATGCTGGCACATATGGAGGCTGAGATACTAAGCCAATTGAAATAAGTCATCCATACAAATATTACCATCTAAAGAACTGAGTGCCTACTTTGTTTGTTATATATATTAGTTAGCGTAATGGCTTATAATAATAGTTGGATAATCACTTCAATAGTTCTGTTACATAGCGATGGATTAATGTATATGTCTCCCATTTGAAATAATAAGCTCTTTGCTGAGTCTTGAGAATAATAGATTTTGGAGGAATCATTTGTATTGCTTCGATTATGATCTTATTAGGTGTTGAATGATATAATATTTATTTTTCCTTGCATCTATCAAATTAAGTTTTTGGGTCAATTGGTGATTTAATATCGGAGCAGGTGATCTAGGACTACAAGGAGGTTTTATTTCCTTCCTAACTAAAATTGGTTTCTACTTGTTGAGTCTTTTTCATATATCAAGCCCACAAGTGAGGGGGAGTTGAATGATATAATATTAAATTTGGACTCACCCATCAGCTTAAGTTTTTGGGTCAGTTGGTGATTTAAGATTAGGGAAATTTTGGTTTTGGAAGATCCATCAATTGTAGTAAATGTTATTTCTATCTTGACTTATTTTATCTGTTGGTTTCATATGTATATTTTCATGTTAGGATCTGATTAGGTTGTTGCATGTCACTGAGTGCGCACTATTGTCAATACTGTATGTTAATCTAGGAAGCATGCACACGTCCAAAATGATGTAAGTGTCAGTGCCGGACATGTGTCCGACATCGATACGTCCCAACACGTCCATGCCACGAAATTCATGTTGCTTTTTATTTATTATTTTCCAATTTTCGACACGTGAAGACACACAAAGACCCTGCATCAGACACACATAGACACATAAGAAACCCAAACCTTTCAAACCAGTAGGTGGCGGAGAGATGGTGGTCGGCATTGGCATGTTTGAGATCGAGCGGTGAAGGGAGAGCCTTATTACATCCATTTCATGTGATTGGCTATGCGTGACTGTGTGGGAGAAGGGGGAAGAGCAGAATCGGGGGAGAAAGTGGTTGTGTGGGAGAAGAGGAGAGCAGTGAAGGATAGAAAGGGAAATATTAGGATTAGGGTTTTAAATTTTAAATGGGCTTTGGGGCCCTTTTTAAAACTTAAATGGGCTTTTCCATTCCAAGTCGTGGGTTTATTTCTCATGAACAGGTTTTTATTTCATTTTTTTTCCTTCTTTTTTTAAAAAATTAATGCTCTTGTATTTTTCTTTTGTAGTCTTTTAGTAAGTCAGTTATTTTTAATAATCAATAACACTTGTATTATATATATTATGTGTGTGTGTATGTTTATATGTATATATAGATAGATATACATACATATATGGGTGTGTATTAAAAAAACAGTGTGTGGGTGTCGTGTCCATTTTTAGAAATTGCTGCGTCGCCATGTTGTGTCGATATCTCATGTCCGTGCTTCATAGATGTTAATTGAATTCCTAAGAACATGTAGATGCTTTAGTAATTTTGGAGAAACTGTCAGCGCCTAGGACTCTAGACAGCTCCACTTAGAAATATACGTTGTGTGATTGTTATGTTTGTTACAGTGTCTATCAAGTGCATCTTAACTAACCCCTGTTTCAATTACGCTTATTGTCTATTAGTTATATTGACCAACCTTATCATTTTTTCATATATAGATTCCTTCCAATTATTCACTTGCCATGTTCTAAAACTTATTTTACGATAGTATCCATAACCTCATTTAAATTGTATTAGTTGAGTGGTTTCTCATCATGCGTCAATCCTTTTCATTTTCTATTACACTTTTTTCCCCATTTGTGCCAAAAAACATCATATTAATAATTATTTTCCTAGAGTTTTCCACGTGCAATGTTCTATAACTTGTTTTACTATAATATTTATTACCTTATTTAAATTGTATTAAATTATGTTTTTTTTAATCATGTGTTAATTTTTCATTTTCATTTTCTGTCACTTTTTTTGACATTACATTTATTATCCTTCGAGTAGAAGATTGCTATACTTGGTTATTACCAAGCTATCAAAAATAAAGAAGAATGAGAATAAAAGAAGCTGTTGTTGTGGTTTTGTTTCTTTCCTCCTGAACAAGAATAGATAAAAGTTGTGAATTGTTGAATGGAAAAGTGGTTAATAACACCATAACGTTGTAGTTCTAGTTGCAAAGAGAACTATTCCTCTTACATAGGCAGGTGAAAGAGGTGGACAAGAATGGAATTTTTTTCAGGCTAGGTTCATGGTATGGCAGAGGAGAATGAGTGGTCCTGGAATGGGATAGTTGTATATAGATGGTTTTTCTCTTAGATCAAACTCATTGTTGTTAAATATATCCGTTTTTAACTTTTACATATACCCTATCTTTGTTCATGAGATTAGTAAATTACCTCATCTTGAACTCACTTTAAAGGTCACGAAAATTTTATTAGTTCATTGTACACGATTTTAGCTCCAAGTGATCCCTATACTGTTTGATTAACCAGTCCTTGGAGTTGAATGTGTTGGTGGACATATTTTAAATGGCATAAAGTTTCCATAACTCATTTACTCGTATGTCTTTGATATCTTTCATGTAGTGGATTTGATGAAAGAAGGTGCTACTATAACCCTGCGCAATGCTAAGATAGACATGTTTAAAGGATCAATGAGGCTTGCTGTAGACAGGTGGGGTCGAGTTGAAGTTACTGAGCCTGCCAATTTCACTGTTAAGGAAGATAACAATCTTTCGCTCATTGAATATGAGCTCGTGAATGTTGTGGAAGAGTGA

mRNA sequence

ATGCCTGCGAAGCCAAGCTGGCATATGTGCAGAAATGTTGATAATCTCTCAGGCAAAGTTCCAAAAGAGTGGTACTTCCCCAGCAAGTCATTTCTTACGGTTCTTTGGGTATTCGTATTCGGGGAAATGGCAGAATCAAAACCAGGACTAAGGAAACCAGTATTTACCAAGGTTGACCAACTTCGGCCAGGCACCAGTGGCCATACTCTTACAGTCAAAGTTGTGAATACGAAGATGGTATTGCAGAAGGGTCGTCCTGATGGTCCTCAAGCCCGTCAGATGCGAATTGCCGAATGCTTAGTGGGTGATGAAACTGGAATGATCATATTTACCGCCAGAAATGATCAAGTGGATTTGATGAAAGAAGGTGCTACTATAACCCTGCGCAATGCTAAGATAGACATGTTTAAAGGATCAATGAGGCTTGCTGTAGACAGGTGGGGTCGAGTTGAAGTTACTGAGCCTGCCAATTTCACTGTTAAGGAAGATAACAATCTTTCGCTCATTGAATATGAGCTCGTGAATGTTGTGGAAGAGTGA

Coding sequence (CDS)

ATGCCTGCGAAGCCAAGCTGGCATATGTGCAGAAATGTTGATAATCTCTCAGGCAAAGTTCCAAAAGAGTGGTACTTCCCCAGCAAGTCATTTCTTACGGTTCTTTGGGTATTCGTATTCGGGGAAATGGCAGAATCAAAACCAGGACTAAGGAAACCAGTATTTACCAAGGTTGACCAACTTCGGCCAGGCACCAGTGGCCATACTCTTACAGTCAAAGTTGTGAATACGAAGATGGTATTGCAGAAGGGTCGTCCTGATGGTCCTCAAGCCCGTCAGATGCGAATTGCCGAATGCTTAGTGGGTGATGAAACTGGAATGATCATATTTACCGCCAGAAATGATCAAGTGGATTTGATGAAAGAAGGTGCTACTATAACCCTGCGCAATGCTAAGATAGACATGTTTAAAGGATCAATGAGGCTTGCTGTAGACAGGTGGGGTCGAGTTGAAGTTACTGAGCCTGCCAATTTCACTGTTAAGGAAGATAACAATCTTTCGCTCATTGAATATGAGCTCGTGAATGTTGTGGAAGAGTGA

Protein sequence

MPAKPSWHMCRNVDNLSGKVPKEWYFPSKSFLTVLWVFVFGEMAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKEDNNLSLIEYELVNVVEE

Homology

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BLAST of CsGy2G016990 vs. NCBI nr
Match: XP_004142984.1 (PREDICTED: uncharacterized protein At4g28440 [Cucumis sativus] >XP_008444318.1 PREDICTED: uncharacterized protein At4g28440 isoform X1 [Cucumis melo] >XP_008444319.1 PREDICTED: uncharacterized protein At4g28440 isoform X1 [Cucumis melo] >XP_011649474.1 PREDICTED: uncharacterized protein At4g28440 [Cucumis sativus] >KGN62287.1 hypothetical protein Csa_2G348250 [Cucumis sativus])

HSP 1 Score: 273.9 bits (699), Expect = 4.0e-70
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 43  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 102
           MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG
Sbjct: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 60

Query: 103 DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKE 162
           DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKE
Sbjct: 61  DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKE 120

Query: 163 DNNLSLIEYELVNVVEE 180
           DNNLSLIEYELVNVVEE
Sbjct: 121 DNNLSLIEYELVNVVEE 137

[Close]

BLAST of CsGy2G016990 vs. NCBI nr
Match: XP_022951207.1 (uncharacterized protein At4g28440-like [Cucurbita moschata] >XP_023001948.1 uncharacterized protein At4g28440-like [Cucurbita maxima] >XP_023538137.1 uncharacterized protein At4g28440-like [Cucurbita pepo subsp. pepo] >XP_023538138.1 uncharacterized protein At4g28440-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 268.1 bits (684), Expect = 2.2e-68
Identity = 134/137 (97.81%), Postives = 136/137 (99.27%), Query Frame = 0


Query: 43  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 102
           MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG
Sbjct: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 60

Query: 103 DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKE 162
           DETGMIIFTARNDQVDLMKEGATI LRNAKIDMFKGSMRLAVDRWGRVEVTEPA+FTVKE
Sbjct: 61  DETGMIIFTARNDQVDLMKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVTEPASFTVKE 120

Query: 163 DNNLSLIEYELVNVVEE 180
           +NNLSLIEYELVNVVEE
Sbjct: 121 ENNLSLIEYELVNVVEE 137

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BLAST of CsGy2G016990 vs. NCBI nr
Match: XP_022131585.1 (uncharacterized protein At4g28440-like [Momordica charantia])

HSP 1 Score: 267.3 bits (682), Expect = 3.7e-68
Identity = 133/137 (97.08%), Postives = 135/137 (98.54%), Query Frame = 0


Query: 43  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 102
           MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQ RQMRIAECLVG
Sbjct: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQVRQMRIAECLVG 60

Query: 103 DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKE 162
           DETGMIIFTARNDQVD+MKEGATI LRNAKIDMFKGSMRLAVDRWGRVEVTEPA+FTVKE
Sbjct: 61  DETGMIIFTARNDQVDMMKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVTEPASFTVKE 120

Query: 163 DNNLSLIEYELVNVVEE 180
           DNNLSLIEYELVNVVEE
Sbjct: 121 DNNLSLIEYELVNVVEE 137

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BLAST of CsGy2G016990 vs. NCBI nr
Match: XP_022961781.1 (uncharacterized protein At4g28440-like [Cucurbita moschata] >XP_022961782.1 uncharacterized protein At4g28440-like [Cucurbita moschata] >XP_023545751.1 uncharacterized protein At4g28440-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 266.5 bits (680), Expect = 6.3e-68
Identity = 134/137 (97.81%), Postives = 134/137 (97.81%), Query Frame = 0


Query: 43  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 102
           MAESKPGLRKPVFTKVDQLRPGTSGHTL VKVVN KMVLQKGRPDGPQARQMRIAECLVG
Sbjct: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQKGRPDGPQARQMRIAECLVG 60

Query: 103 DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKE 162
           DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPA FTVKE
Sbjct: 61  DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPAAFTVKE 120

Query: 163 DNNLSLIEYELVNVVEE 180
           DNNLSLIEYELVNVVEE
Sbjct: 121 DNNLSLIEYELVNVVEE 137

[Close]

BLAST of CsGy2G016990 vs. NCBI nr
Match: XP_022996548.1 (uncharacterized protein At4g28440-like [Cucurbita maxima] >XP_022996550.1 uncharacterized protein At4g28440-like [Cucurbita maxima])

HSP 1 Score: 265.4 bits (677), Expect = 1.4e-67
Identity = 133/137 (97.08%), Postives = 134/137 (97.81%), Query Frame = 0


Query: 43  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 102
           MAESKPGLRKPVFTKVDQLRPGTSGHTL VKVVN KMVLQKGRPDGPQARQMRIAECLVG
Sbjct: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQKGRPDGPQARQMRIAECLVG 60

Query: 103 DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKE 162
           DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPA FTVKE
Sbjct: 61  DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPAAFTVKE 120

Query: 163 DNNLSLIEYELVNVVEE 180
           DNNLSLIEYELVNV+EE
Sbjct: 121 DNNLSLIEYELVNVMEE 137

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BLAST of CsGy2G016990 vs. TAIR10
Match: AT1G23750.1 (Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 234.2 bits (596), Expect = 6.3e-62
Identity = 113/137 (82.48%), Postives = 129/137 (94.16%), Query Frame = 0


Query: 43  MAES-KPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLV 102
           MA+S K GL+KP FTKVDQLRPGTSGH + VK+V+TKMVLQKGR DGPQARQ+RI+EC+V
Sbjct: 1   MADSTKAGLKKPAFTKVDQLRPGTSGHNVNVKIVSTKMVLQKGRADGPQARQLRISECIV 60

Query: 103 GDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVK 162
           GDETG+I+FTARNDQVDLMKEG+T+TLRNAKIDM+KGSMRLAVD+WGRVEVTEPA+F VK
Sbjct: 61  GDETGVIVFTARNDQVDLMKEGSTVTLRNAKIDMYKGSMRLAVDKWGRVEVTEPASFKVK 120

Query: 163 EDNNLSLIEYELVNVVE 179
           ED N+SLIEYELVNVVE
Sbjct: 121 EDTNMSLIEYELVNVVE 137

[Close]

BLAST of CsGy2G016990 vs. TAIR10
Match: AT1G10590.3 (Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 219.2 bits (557), Expect = 2.1e-57
Identity = 109/138 (78.99%), Postives = 126/138 (91.30%), Query Frame = 0


Query: 42  EMAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQK--GRPDGPQARQMRIAEC 101
           +MAE+   LRKPVFTKV++LRPGT+GH+L VKVVNTKMV+Q+  GRP GPQ+RQMRIAEC
Sbjct: 14  KMAEATSALRKPVFTKVNELRPGTNGHSLNVKVVNTKMVMQRGGGRPMGPQSRQMRIAEC 73

Query: 102 LVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVT-EPANF 161
           LVGDETG+IIFTARNDQVD+MKEG+ +TLRNAKIDM+KGSMRLAVDRWGRVEV  EP + 
Sbjct: 74  LVGDETGIIIFTARNDQVDMMKEGSVVTLRNAKIDMYKGSMRLAVDRWGRVEVAEEPTDI 133

Query: 162 TVKEDNNLSLIEYELVNV 177
           TVK+DNNLSLIEYELV+V
Sbjct: 134 TVKDDNNLSLIEYELVSV 151

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BLAST of CsGy2G016990 vs. TAIR10
Match: AT2G33845.1 (Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 193.0 bits (489), Expect = 1.6e-49
Identity = 97/128 (75.78%), Postives = 107/128 (83.59%), Query Frame = 0


Query: 53  PVFTKVDQLRPGTSGHTLTVKVVNTKMVLQK-GRPDGPQARQMRIAECLVGDETGMIIFT 112
           PVF KVDQL+PGTSGHTLTVKVV+   V QK G       R  RI+ECLVGDET  I+FT
Sbjct: 55  PVFVKVDQLKPGTSGHTLTVKVVDQNSVPQKPGAASSSHLRPARISECLVGDETACILFT 114

Query: 113 ARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKEDNNLSLIEY 172
           ARNDQV+LMK GAT+ LRNAKIDMFKGSMRLAVD+WGR+E TEPA+ TVKEDNNLSL+EY
Sbjct: 115 ARNDQVELMKPGATVNLRNAKIDMFKGSMRLAVDKWGRIEATEPADITVKEDNNLSLVEY 174

Query: 173 ELVNVVEE 180
           ELVNVVEE
Sbjct: 175 ELVNVVEE 182

[Close]

BLAST of CsGy2G016990 vs. TAIR10
Match: AT4G28440.1 (Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 179.1 bits (453), Expect = 2.4e-45
Identity = 88/132 (66.67%), Postives = 107/132 (81.06%), Query Frame = 0


Query: 51  RKPVFTKVDQLRPGTSGHTLTVKVVNTKMVL---QKGRPDGPQAR---QMRIAECLVGDE 110
           RKPVF KV+QL+PGT+GHTLTVKV+   +V+   +K RP    +R     RI ECL+GDE
Sbjct: 18  RKPVFVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDE 77

Query: 111 TGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKEDN 170
           TG I+FTARNDQVDLMK GAT+ LRN++IDMFKG+MRL VD+WGR+E T  A+FTVKEDN
Sbjct: 78  TGCILFTARNDQVDLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGAASFTVKEDN 137

Query: 171 NLSLIEYELVNV 177
           NLSL+EYEL+NV
Sbjct: 138 NLSLVEYELINV 149

[Close]

BLAST of CsGy2G016990 vs. TAIR10
Match: AT1G03810.1 (Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 165.2 bits (417), Expect = 3.6e-41
Identity = 80/127 (62.99%), Postives = 98/127 (77.17%), Query Frame = 0


Query: 51  RKPVFTKVDQLRPGTSGHTLTVKVVNT---KMVLQKGRPDGPQARQMRIAECLVGDETGM 110
           RKPVF KVDQL+PGTSGHTL VKV+ +   K  ++K           RIAECL+GD+TG 
Sbjct: 15  RKPVFVKVDQLKPGTSGHTLIVKVLESNPVKPAIRKSSLTQQPISSPRIAECLIGDDTGC 74

Query: 111 IIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKEDNNLS 170
           I+FTARNDQVDLMK GAT+ LRNAKID+FK +MR+AVDRWGR+E+T P +F V   NNLS
Sbjct: 75  ILFTARNDQVDLMKTGATVILRNAKIDLFKDTMRMAVDRWGRIEITGPVSFEVNRANNLS 134

Query: 171 LIEYELV 175
           L+EYE++
Sbjct: 135 LVEYEVI 141

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BLAST of CsGy2G016990 vs. Swiss-Prot
Match: sp|O49453|Y4844_ARATH (Uncharacterized protein At4g28440 OS=Arabidopsis thaliana OX=3702 GN=At4g28440 PE=1 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 4.4e-44
Identity = 88/132 (66.67%), Postives = 107/132 (81.06%), Query Frame = 0


Query: 51  RKPVFTKVDQLRPGTSGHTLTVKVVNTKMVL---QKGRPDGPQAR---QMRIAECLVGDE 110
           RKPVF KV+QL+PGT+GHTLTVKV+   +V+   +K RP    +R     RI ECL+GDE
Sbjct: 18  RKPVFVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDE 77

Query: 111 TGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKEDN 170
           TG I+FTARNDQVDLMK GAT+ LRN++IDMFKG+MRL VD+WGR+E T  A+FTVKEDN
Sbjct: 78  TGCILFTARNDQVDLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGAASFTVKEDN 137

Query: 171 NLSLIEYELVNV 177
           NLSL+EYEL+NV
Sbjct: 138 NLSLVEYELINV 149

[Close]

BLAST of CsGy2G016990 vs. TrEMBL
Match: tr|A0A1S3BA24|A0A1S3BA24_CUCME (uncharacterized protein At4g28440 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487687 PE=4 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 2.6e-70
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 43  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 102
           MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG
Sbjct: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 60

Query: 103 DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKE 162
           DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKE
Sbjct: 61  DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKE 120

Query: 163 DNNLSLIEYELVNVVEE 180
           DNNLSLIEYELVNVVEE
Sbjct: 121 DNNLSLIEYELVNVVEE 137

[Close]

BLAST of CsGy2G016990 vs. TrEMBL
Match: tr|A0A0A0LNA1|A0A0A0LNA1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G348250 PE=4 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 2.6e-70
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 43  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 102
           MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG
Sbjct: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 60

Query: 103 DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKE 162
           DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKE
Sbjct: 61  DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKE 120

Query: 163 DNNLSLIEYELVNVVEE 180
           DNNLSLIEYELVNVVEE
Sbjct: 121 DNNLSLIEYELVNVVEE 137

[Close]

BLAST of CsGy2G016990 vs. TrEMBL
Match: tr|A0A151TGI4|A0A151TGI4_CAJCA (Uncharacterized protein At4g28440 family OS=Cajanus cajan OX=3821 GN=KK1_012448 PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 3.0e-66
Identity = 128/137 (93.43%), Postives = 134/137 (97.81%), Query Frame = 0


Query: 43  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 102
           MA+SKPGLRKPVFTKVDQLRPGTSGHTLTVKVVN KMV+QKGRPDGPQ+RQMRIAECLVG
Sbjct: 1   MADSKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNAKMVMQKGRPDGPQSRQMRIAECLVG 60

Query: 103 DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKE 162
           DETGMIIFTARNDQVDLMKEGAT+ LRNAKIDMFKGSMRLAVD+WGRVEVTEPA+FTVKE
Sbjct: 61  DETGMIIFTARNDQVDLMKEGATVILRNAKIDMFKGSMRLAVDKWGRVEVTEPASFTVKE 120

Query: 163 DNNLSLIEYELVNVVEE 180
           DNNLSLIEYELVNVV E
Sbjct: 121 DNNLSLIEYELVNVVVE 137

[Close]

BLAST of CsGy2G016990 vs. TrEMBL
Match: tr|A0A151TGI6|A0A151TGI6_CAJCA (Uncharacterized protein At4g28440 family OS=Cajanus cajan OX=3821 GN=KK1_012449 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 3.9e-66
Identity = 127/137 (92.70%), Postives = 134/137 (97.81%), Query Frame = 0


Query: 43  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 102
           MA+SKPGLRKPVFTKVDQLRPGTSGHTLTVKVVN KMV+QKGRPDGPQ+RQMRIAECLVG
Sbjct: 1   MADSKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNAKMVMQKGRPDGPQSRQMRIAECLVG 60

Query: 103 DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKE 162
           DETGM+IFTARNDQVDLMKEGAT+ LRNAKIDMFKGSMRLAVD+WGRVEVTEPA+FTVKE
Sbjct: 61  DETGMVIFTARNDQVDLMKEGATVILRNAKIDMFKGSMRLAVDKWGRVEVTEPASFTVKE 120

Query: 163 DNNLSLIEYELVNVVEE 180
           DNNLSLIEYELVNVV E
Sbjct: 121 DNNLSLIEYELVNVVVE 137

[Close]

BLAST of CsGy2G016990 vs. TrEMBL
Match: tr|A0A2C9UT31|A0A2C9UT31_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_12G028600 PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 1.1e-65
Identity = 129/137 (94.16%), Postives = 133/137 (97.08%), Query Frame = 0


Query: 43  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 102
           MAESK GLRKPVFTKVDQLRPGTSGHTLTVKVV+ KMVLQKGRPDGPQ RQMRIAECLVG
Sbjct: 1   MAESKSGLRKPVFTKVDQLRPGTSGHTLTVKVVSAKMVLQKGRPDGPQIRQMRIAECLVG 60

Query: 103 DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKE 162
           DETGMIIFTARNDQVDLMKEG+TI LRNAKIDMFKGSMRLAVD+WGRVEVTEPA+FTVKE
Sbjct: 61  DETGMIIFTARNDQVDLMKEGSTIILRNAKIDMFKGSMRLAVDKWGRVEVTEPASFTVKE 120

Query: 163 DNNLSLIEYELVNVVEE 180
           DNNLSLIEYELVNVVEE
Sbjct: 121 DNNLSLIEYELVNVVEE 137

The following BLAST results are available for this feature:

BLAST of CsGy2G016990 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004142984.1	4.0e-70	100.00	PREDICTED: uncharacterized protein At4g28440 [Cucumis sativus] >XP_008444318.1 P...	[more]
XP_022951207.1	2.2e-68	97.81	uncharacterized protein At4g28440-like [Cucurbita moschata] >XP_023001948.1 unch...	[more]
XP_022131585.1	3.7e-68	97.08	uncharacterized protein At4g28440-like [Momordica charantia]	[more]
XP_022961781.1	6.3e-68	97.81	uncharacterized protein At4g28440-like [Cucurbita moschata] >XP_022961782.1 unch...	[more]
XP_022996548.1	1.4e-67	97.08	uncharacterized protein At4g28440-like [Cucurbita maxima] >XP_022996550.1 unchar...	[more]

BLAST of CsGy2G016990 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G23750.1	6.3e-62	82.48	Nucleic acid-binding, OB-fold-like protein	[more]
AT1G10590.3	2.1e-57	78.99	Nucleic acid-binding, OB-fold-like protein	[more]
AT2G33845.1	1.6e-49	75.78	Nucleic acid-binding, OB-fold-like protein	[more]
AT4G28440.1	2.4e-45	66.67	Nucleic acid-binding, OB-fold-like protein	[more]
AT1G03810.1	3.6e-41	62.99	Nucleic acid-binding, OB-fold-like protein	[more]

BLAST of CsGy2G016990 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O49453\|Y4844_ARATH	4.4e-44	66.67	Uncharacterized protein At4g28440 OS=Arabidopsis thaliana OX=3702 GN=At4g28440 P...	[more]

BLAST of CsGy2G016990 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BA24\|A0A1S3BA24_CUCME	2.6e-70	100.00	uncharacterized protein At4g28440 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10348...	[more]
tr\|A0A0A0LNA1\|A0A0A0LNA1_CUCSA	2.6e-70	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G348250 PE=4 SV=1	[more]
tr\|A0A151TGI4\|A0A151TGI4_CAJCA	3.0e-66	93.43	Uncharacterized protein At4g28440 family OS=Cajanus cajan OX=3821 GN=KK1_012448 ...	[more]
tr\|A0A151TGI6\|A0A151TGI6_CAJCA	3.9e-66	92.70	Uncharacterized protein At4g28440 family OS=Cajanus cajan OX=3821 GN=KK1_012449 ...	[more]
tr\|A0A2C9UT31\|A0A2C9UT31_MANES	1.1e-65	94.16	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_12G028600 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR012340	NA-bd_OB-fold

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy2G016990.1	CsGy2G016990.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:2.40.50.140		coord: 65..168 e-value: 1.5E-38 score: 133.1
None	No IPR available	PANTHER	PTHR31472	FAMILY NOT NAMED	coord: 42..179
None	No IPR available	PANTHER	PTHR31472:SF1	EXPRESSED PROTEIN-RELATED	coord: 42..179
None	No IPR available	CDD	cd04491	SoSSB_OBF	coord: 69..152 e-value: 8.60956E-17 score: 70.7297
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	SSF50249	Nucleic acid-binding proteins	coord: 47..176

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy2G016990	Cla000797	Watermelon (97103) v1	cgybwmB098
CsGy2G016990	Csa2G348250	Cucumber (Chinese Long) v2	cgybcuB057
CsGy2G016990	MELO3C010663	Melon (DHL92) v3.5.1	cgybmeB102
CsGy2G016990	ClCG08G018040	Watermelon (Charleston Gray)	cgybwcgB155
CsGy2G016990	CSPI02G17000	Wild cucumber (PI 183967)	cgybcpiB057
CsGy2G016990	CmaCh12G000060	Cucurbita maxima (Rimu)	cgybcmaB170
CsGy2G016990	CmaCh05G000100	Cucurbita maxima (Rimu)	cgybcmaB250
CsGy2G016990	CmoCh12G000060	Cucurbita moschata (Rifu)	cgybcmoB162
CsGy2G016990	CmoCh05G000110	Cucurbita moschata (Rifu)	cgybcmoB238
CsGy2G016990	Lsi08G016820	Bottle gourd (USVL1VR-Ls)	cgyblsiB129
CsGy2G016990	Cp4.1LG07g00100	Cucurbita pepo (Zucchini)	cgybcpeB263
CsGy2G016990	Cp4.1LG11g00570	Cucurbita pepo (Zucchini)	cgybcpeB161
CsGy2G016990	MELO3C010663.2	Melon (DHL92) v3.6.1	cgybmedB101
CsGy2G016990	CsaV3_2G024610	Cucumber (Chinese Long) v3	cgybcucB065
CsGy2G016990	Cla97C08G161810	Watermelon (97103) v2	cgybwmbB156
CsGy2G016990	Bhi04G000524	Wax gourd	cgybwgoB150
CsGy2G016990	Carg21808	Silver-seed gourd	carcgybB0506
CsGy2G016990	Carg20514	Silver-seed gourd	carcgybB0622

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None